mag_id completeness contamination contigs total_length gc n50 sample_accession run_accession country project_accession study_accession database_origin reference rep_95id rep_99id taxonomy species food_name sample_name origin ingredient_group main_ingredient food_type consistency alcohol_level acid_type fermentation_temperature aging_time LeechJ_xxxx__AF38__bin.2 90.69664903 3.095238095 245 1564722 39.52 8805 SAMN39472457 SRR27593211 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MotaGutierrezJ_2021__SRR11602140__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides agadagidi agadagidi Plant Fruit plantain beverage liquid low lactic mesophilic 1-7 days LeechJ_xxxx__AF38__bin.5 89.09836066 1.839708561 210 1338094 53.14 9243 SAMN39472457 SRR27593211 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF66__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum agadagidi agadagidi Plant Fruit plantain beverage liquid low lactic mesophilic 1-7 days LeechJ_xxxx__AF38__bin.7 89.46007696 4.707856858 386 1779064 37.32 5614 SAMN39472457 SRR27593211 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK031-1-L-48h-03B2_S30__bin.1 LeechJ_xxxx__AF38__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc suionicum agadagidi agadagidi Plant Fruit plantain beverage liquid low lactic mesophilic 1-7 days LeechJ_xxxx__AF72__bin.1 72.10497835 1.199494949 392 1424517 36.15 4036 SAMN39472491 SRR27593169 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 LeechJ_xxxx__AF63__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis agadagidi agadagidi Plant Fruit plantain beverage liquid low lactic mesophilic 1-7 days LeechJ_xxxx__AF72__bin.2 70.11297387 4.749657064 497 2489447 45.04 5934 SAMN39472491 SRR27593169 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 LeechJ_xxxx__AF72__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum agadagidi agadagidi Plant Fruit plantain beverage liquid low lactic mesophilic 1-7 days LeechJ_xxxx__AF72__bin.7 97.54098361 0 81 1712742 53.05 31260 SAMN39472491 SRR27593169 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 FontanaF_2023__SRR20746839__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum agadagidi agadagidi Plant Fruit plantain beverage liquid low lactic mesophilic 1-7 days LeechJ_xxxx__AF72__bin.3 95.59336824 1.413612565 125 1250033 45.58 15988 SAMN39472491 SRR27593169 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF72__bin.3 LeechJ_xxxx__AF72__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Fructobacillus NA agadagidi agadagidi Plant Fruit plantain beverage liquid low lactic mesophilic 1-7 days GCF_000876205.1_ASM87620v1_genomic 99.46 0.82 105 1904253 39.8 37087 GCF_000876205.1 GCF_000876205.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 DeFilippisF_xxxx__DF_7__bin.8 DeFilippisF_xxxx__DF_7__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus wasatchensis cheese cheddar aged_cheddar_cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months LeechJ_2020__ERS3967719__bin.1 69.01776385 0 292 1945198 34.99 9188 ERS3967719 ERR4757834 Russia PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MAG_501 LeechJ_2020__ERS3967719__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis agousha agousha Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days LeechJ_2020__ERS3967719__bin.10 56.22357476 0.314465409 68 1090223 39.54 21320 ERS3967719 ERR4757834 Russia PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. WalshL_xxxx__V9__bin.2 WalshL_xxxx__V9__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis agousha agousha Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days LeechJ_2020__ERS3967719__bin.7 84.3120474 0.51843318 214 1727741 60.18 9833 ERS3967719 ERR4757834 Russia PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967706__bin.3 LeechJ_2020__ERS3967706__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium longum agousha agousha Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days LeechJ_2020__ERS3967719__bin.4 67.24137931 0 95 1293077 47.18 20919 ERS3967719 ERR4757834 Russia PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967703__bin.6 LeechJ_2020__ERS3967703__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus mucosae agousha agousha Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days ODFM-BA-A-0110-001_Corynebacterium_nuruki_S6-4 99.1 0.45 68 3106595 69.49 92693 ODFM-BA-A-0110-001 ODFM-BA-A-0110-001 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0110-001_Corynebacterium_nuruki_S6-4 ODFM-BA-A-0110-001_Corynebacterium_nuruki_S6-4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium nuruki fermentation starter alcohol_fermentation_starter Plant Grain rice starter culture semi-solid low none none 5-7 days EBC_031.14 56.19 0 88 4343687 53.28 89000 SAMN40633065 SRS20892295 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_031.14 EBC_031.14 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Citrobacter_A Citrobacter A amalonaticus sauerkraut alimentari_aurora_red_kraut_brine Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks EBC_030.11 56.9 0 50 2090976 52.02 66283 SAMN40633064 SRS20892296 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 LeechJ_2020__ERS3967711__bin.13 EBC_030.11 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Rahnella Rahnella variigena sauerkraut alimentari_aurora_red_kraut_solid Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks Imad_A-2.bin.9 89.43 2.18 491 2692551 42.27 7319 SAMN29828073 SRR20308680 Lebanon PRJNA860091 SRP387050 NCBI Ammoun I, Kothe CI, Mohellibi N, Beal C, Yaacoub R, Renault P. Lebanese fermented goat milk products: From tradition to meta-omics. Food Res Int. 2023 Jun;168:112762. doi: 10.1016/j.foodres.2023.112762. MASTER_WP4_FFoQSI_2__VB11-26__bin.7 Imad_A-2.bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter johnsonii ambriss ambriss Animal Dairy milk goat cheese semi-solid none lactic mesophilic 20 days GCF_003403295.1_ASM340329v1_genomic 100 0 196 3477184 62.73 49803 GCF_003403295.1 GCF_003403295.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003403295.1_ASM340329v1_genomic GCF_003403295.1_ASM340329v1_genomic Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter melaceti vinegar apple cider apple_cider_vinegar Plant Fruit apple vinegar liquid low acetic mesophilic 3-4 weeks GCF_013155425.1_ASM1315542v1_genomic 100 1 143 3738899 62.57 60583 GCF_013155425.1 GCF_013155425.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 ArikanM_2020__ERS1939593__bin.5 GCF_013155425.1_ASM1315542v1_genomic Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas entanii vinegar apple cider apple_cider_vinegar Plant Fruit apple vinegar liquid low acetic mesophilic 3-4 weeks GCF_004102045.2_ASM410204v2_genomic 98.4 0 1 1664394 40.32 1664394 GCF_004102045.2 GCF_004102045.2 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_004102045.2_ASM410204v2_genomic GCF_004102045.2_ASM410204v2_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus sicerae cider apple apple_juice_in_fermentation_cider Plant Fruit apple beverage liquid medium lactic mesophilic 1-3 months LeechJ_2020__ERS3967724__bin.7 99.75124378 0 45 2833276 61.08 111736 ERS3967724 ERR4757839 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. G_275_3_oxydans_assembly LeechJ_2020__ERS3967724__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter potus vinegar apple cider apple_cider_vinegar Plant Fruit apple vinegar liquid low acetic mesophilic 3-4 weeks LeechJ_2020__ERS3967724__bin.1 95.4642112 0.497512438 305 2330766 60.28 11506 ERS3967724 ERR4757839 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967724__bin.1 LeechJ_2020__ERS3967724__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter sp937900755 vinegar apple cider apple_cider_vinegar Plant Fruit apple vinegar liquid low acetic mesophilic 3-4 weeks LeechJ_2020__ERS3967724__bin.4 99.47643979 1.178010471 29 2439138 36.65 136811 ERS3967724 ERR4757839 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 LeechJ_2020__ERS3967724__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii vinegar apple cider apple_cider_vinegar Plant Fruit apple vinegar liquid low acetic mesophilic 3-4 weeks LeechJ_2020__ERS3967724__bin.3 97.32620321 0 31 1842301 37.72 89565 ERS3967724 ERR4757839 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. GCF_020510245.1_ASM2051024v1_genomic LeechJ_2020__ERS3967724__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus oeni vinegar apple cider apple_cider_vinegar Plant Fruit apple vinegar liquid low acetic mesophilic 3-4 weeks GCF_001434835.1_ASM143483v1_genomic 99.38 1.25 18 2914969 51.61 444236 GCF_001434835.1 GCF_001434835.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001434835.1_ASM143483v1_genomic GCF_001434835.1_ASM143483v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus acidifarinae sourdough artisanal_wheat_sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days GCF_009295845.1_ASM929584v1_genomic 99.2 1.25 1 2825994 53.32 2825994 GCF_009295845.1 GCF_009295845.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_009295845.1_ASM929584v1_genomic GCF_009295845.1_ASM929584v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus zymae sourdough artisanal_wheat_sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LeechJ_xxxx__AF82__bin.9 77.12468595 3.488749047 536 1919860 47.15 3941 SAMN39472501 SRR27593158 Burkina Faso PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 LeechJ_xxxx__AF82__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus attieke attieke Plant Roots_Tubers cassava starch-based staple solid none lactic mesophilic 1-7 days LeechJ_xxxx__AF82__bin.16 87.92376455 3.339517625 205 1814187 36.45 15630 SAMN39472501 SRR27593158 Burkina Faso PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 LeechJ_xxxx__AF82__bin.16 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus attieke attieke Plant Roots_Tubers cassava starch-based staple solid none lactic mesophilic 1-7 days LeechJ_xxxx__AF82__bin.18 93.02536232 2.309782609 123 1442486 54.4 16814 SAMN39472501 SRR27593158 Burkina Faso PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009428965.1_ASM942896v1_genomic GCF_009428965.1_ASM942896v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus pontis attieke attieke Plant Roots_Tubers cassava starch-based staple solid none lactic mesophilic 1-7 days LeechJ_xxxx__AF82__bin.12 50.92950455 0.815217391 156 793249 49.33 6082 SAMN39472501 SRR27593158 Burkina Faso PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__P-22__bin.8 GCF_001435935.1_ASM143593v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus panis attieke attieke Plant Roots_Tubers cassava starch-based staple solid none lactic mesophilic 1-7 days LeechJ_xxxx__AF82__bin.13 94.90428403 1.82436611 146 1711855 36.72 23735 SAMN39472501 SRR27593158 Burkina Faso PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF82__bin.13 LeechJ_xxxx__AF82__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus NA attieke attieke Plant Roots_Tubers cassava starch-based staple solid none lactic mesophilic 1-7 days LeechJ_xxxx__AF82__bin.10 69.4 0.1 2280 9060850 31.24 4849 SAMN39472501 SRR27593158 Burkina Faso PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF82__bin.10 LeechJ_xxxx__AF82__bin.10 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia unknown attieke attieke Plant Roots_Tubers cassava starch-based staple solid none lactic mesophilic 1-7 days GCF_003967595.1_ASM396759v1_genomic 99.48 1.05 18 2357792 34.58 231598 GCF_003967595.1 GCF_003967595.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003967595.1_ASM396759v1_genomic GCF_003967595.1_ASM396759v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus musae pickle chinese banana_fruits Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months MAG_3 72.08 0.38 741 2584791 64.29 3891 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_3 MAG_3 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter protophormiae kinema soybean Plant Legumes soybean soybean paste semi-solid none mixed mesophilic 1-3 days MAG_8 100 0 19 3822185 37.82 389948 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_8 MAG_8 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Proteus Proteus cibarius dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_9 50.27 9.34 978 2575931 37.29 2665 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_11 MAG_9 Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_11 50.77 7.76 679 1533426 36.46 2197 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_11 MAG_11 Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_45 85.45 0.19 536 2560056 43.83 6140 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_45 MAG_45 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_D Enterococcus D casseliflavus dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_53 78.89 6.81 1141 5053502 34.46 5211 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_131 MAG_53 Bacillota;Bacilli;Bacillales_B;Bacillaceae_C;Heyndrickxia Heyndrickxia oleronia dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_57 60.49 0.44 601 1715057 54.67 3000 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_485 MAG_57 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium stationis dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_62 78.57 6.69 717 6936647 34.42 12873 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LeechJ_xxxx__AF15__bin.4 MAG_62 Bacillota;Bacilli;Bacillales;Bacillaceae_G;Bacillus_A Bacillus A pacificus dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_63 83.56 2.2 668 2558475 43.57 4564 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_45 MAG_63 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_D Enterococcus D casseliflavus dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_68 93.1 5.32 134 3059160 40.83 49081 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. YulandiA_2020__SRS6115053__bin.10 YulandiA_2020__SRS6115053__bin.10 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_D Enterococcus D gallinarum dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_97 98.67 1 35 4133280 44.71 212762 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MotaGutierrezJ_2021__SRR11602153__bin.8 MAG_97 Bacillota;Bacilli;Bacillales_H;Bacillaceae_D;Shouchella Shouchella rhizosphaerae dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_125 99.62 0 68 2648190 38.3 84448 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0139-001_Enterococcus_lactis_CICC_24101 MAG_125 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B lactis dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_131 83.22 1.63 466 4852161 35.46 14637 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_131 MAG_131 Bacillota;Bacilli;Bacillales_B;Bacillaceae_C;Heyndrickxia Heyndrickxia oleronia dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_139 98.27 9.95 125 4752767 45.47 109597 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. TomarS_2023__SRR15925267__bin.15 TomarS_2023__SRR15925267__bin.15 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus licheniformis dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_163 99.45 1.66 47 2884118 32.84 146122 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_112 MAG_112 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus nepalensis dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_183 95.53 2.68 667 4510868 55.62 9288 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_183 MAG_183 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Leclercia Leclercia adecarboxylata dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_186 69.29 4.81 715 3507761 35.08 5561 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_131 MAG_186 Bacillota;Bacilli;Bacillales_B;Bacillaceae_C;Heyndrickxia Heyndrickxia oleronia dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_194 86.98 3.81 281 2261211 37.79 10055 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_194 MAG_194 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Rummeliibacillus Rummeliibacillus stabekisii dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_196 100 0.22 30 3801552 42.85 217210 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_196 MAG_196 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter sp039594835 dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_588 66.38 0 260 2895999 31.88 17539 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. KharnaiorP_2023__SRR22859377__bin.9 KumarJ_2019__SRS4562502__bin.1 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus Vagococcus fluvialis dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_589 63.21 2.63 564 1945943 34.09 3761 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_589 MAG_589 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes Atopostipes sp041223305 dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_590 50.23 0 87 1063947 34.43 22084 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_595 MAG_590 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus NA dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_591 57.1 8.85 180 1064230 34.4 6634 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_595 MAG_591 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus NA dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_592 96.68 0.81 199 3599997 44.11 32618 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MotaGutierrezJ_2021__SRR11602153__bin.4 MAG_592 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus subtilis dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_593 96.89 2.21 50 2898324 31.78 128860 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. KharnaiorP_2023__SRR22859379__bin.2 MAG_593 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Mammaliicoccus Mammaliicoccus lentus dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_594 94.48 2.39 100 2589850 32.42 42529 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_594 MAG_594 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Mammaliicoccus Mammaliicoccus sciuri dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_595 90.63 1.93 253 2582832 33.38 17184 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_595 MAG_595 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus NA dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_596 53.76 0 244 2403481 32.16 13113 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. KharnaiorP_2023__SRR22859377__bin.9 MAG_596 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus Vagococcus fluvialis dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_597 55.98 7.76 305 1198366 38.46 4393 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_612 MAG_597 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_I Enterococcus I aquimarinus dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_598 99.55 0.6 120 2770992 37.56 42213 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_CSIC_1__P2235_73323__bin.9 MAG_598 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_599 98.95 1.93 54 2776312 32.99 115637 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. KumarJ_2019__SRS4562503__bin.5 KumarJ_2019__SRS4562503__bin.5 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus gallinarum dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_600 76.22 1.29 509 1732920 32.58 3956 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_594 MAG_600 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Mammaliicoccus Mammaliicoccus sciuri dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_601 80.81 4.6 503 1835443 32.66 4234 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_594 MAG_601 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Mammaliicoccus Mammaliicoccus sciuri dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_602 82.35 3.5 694 2111242 32.38 3251 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. KharnaiorP_2023__SRR22859377__bin.9 MAG_602 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus Vagococcus fluvialis dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_603 95.2 0.92 188 2663885 32.37 25165 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. KharnaiorP_2023__SRR22859377__bin.9 MAG_603 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus Vagococcus fluvialis dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_604 87.9 7.8 588 2454101 33.33 4928 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_595 MAG_604 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus NA dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_605 93.07 3.87 203 2740777 33.07 24319 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_595 MAG_605 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus NA dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_606 98.28 4.21 48 2569775 41.13 437497 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. KumarJ_2019__SRS4562503__bin.9 KumarJ_2019__SRS4562503__bin.9 Bacillota;Bacilli;Staphylococcales;Salinicoccaceae;Jeotgalicoccus Jeotgalicoccus nanhaiensis dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_607 50.86 9.48 973 3996566 31.96 4851 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_611 MAG_607 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus NA dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_608 95.54 1.67 218 3069597 37.65 20452 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_608 MAG_608 Bacillota;Bacilli;Bacillales_B;Caldibacillaceae;Caldifermentibacillus Caldifermentibacillus hisashii dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_609 69.31 0 428 3424001 32.72 11579 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. KharnaiorP_2023__SRR22859377__bin.9 MAG_609 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus Vagococcus fluvialis dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_610 97.14 8.07 354 3212400 38.46 20533 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0139-001_Enterococcus_lactis_CICC_24101 KumarJ_2019__SRS4562500__bin.25 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B lactis dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_611 75.67 7.45 616 3487912 33.14 7141 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_611 MAG_611 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus NA dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_612 72.93 2.15 434 1873534 38.84 5420 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_612 MAG_612 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_I Enterococcus I aquimarinus dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_613 53.14 2.94 422 1518247 42.02 4087 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_45 MAG_613 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_D Enterococcus D casseliflavus dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_614 60.9 0.61 700 2255493 64.4 3534 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_3 MAG_614 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter protophormiae dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months MAG_615 63.08 0.16 855 2762795 47.5 3533 ['SAMEA103891070', 'SAMEA103891071', 'SAMEA103891072', 'SAMEA103891073', 'SAMEA103891074', 'SAMN11289617', 'SAMN11289618', 'SAMN11289615', 'SAMN11289616'] ['ERR1869526', 'ERR1869527', 'ERR1869528', 'ERR1869529', 'ERR1869530', 'SRR8830666', 'SRR8830667', 'SRR8830668', 'SRR8830669'] ['Korea', 'India'] ['PRJEB19846', 'PRJNA529966'] ['ERP021911', 'SRP190006'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0009-005_Bacillus_velezensis_YJ11-1-4 MAG_615 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus velezensis dajiang-meju bean_paste Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 months GCF_001580535.1_ASM158053v1_genomic 99.5 0.25 157 3088073 58.02 51728 GCF_001580535.1 GCF_001580535.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 SRR10454517C1506_cerevisiae_assembly GCF_001580535.1_ASM158053v1_genomic Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter cerevisiae beer beer Plant Grain barley beverage liquid medium none mesophilic 1 week - 3 months GCF_001702115.1_ASM170211v1_genomic 98.75 0.62 1 1389742 34.25 1389742 GCF_001702115.1 GCF_001702115.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001702115.1_ASM170211v1_genomic GCF_001702115.1_ASM170211v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Fructilactobacillus Fructilactobacillus lindneri beer beer Plant Grain barley beverage liquid medium none mesophilic 1 week - 3 months GCF_001702155.1_ASM170215v1_genomic 99.38 3.44 3 3321356 46.98 3235324 GCF_001702155.1 GCF_001702155.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001702155.1_ASM170215v1_genomic GCF_001702155.1_ASM170215v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Secundilactobacillus Secundilactobacillus paracollinoides beer beer Plant Grain barley beverage liquid medium none mesophilic 1 week - 3 months GCF_006539325.1_ASM653932v1_genomic 100 0 78 2997537 56.45 151988 GCF_006539325.1 GCF_006539325.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_006539325.1_ASM653932v1_genomic GCF_006539325.1_ASM653932v1_genomic Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orleanensis beer beer Plant Grain barley beverage liquid medium none mesophilic 1 week - 3 months GCF_011516885.1_ASM1151688v1_genomic 100 0 193 3252368 57.17 75608 GCF_011516885.1 GCF_011516885.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_011516885.1_ASM1151688v1_genomic GCF_011516885.1_ASM1151688v1_genomic Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lambici beer beer Plant Grain barley beverage liquid medium none mesophilic 1 week - 3 months GCF_015244675.1_ASM1524467v1_genomic 99.5 0 40 3006335 58.32 206922 GCF_015244675.1 GCF_015244675.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_015244675.1_ASM1524467v1_genomic GCF_015244675.1_ASM1524467v1_genomic Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter cerevisiae beer beer Plant Grain barley beverage liquid medium none mesophilic 1 week - 3 months ODFM-BA-A-0118-001_Brettanomyces_anomalus_YV396 99.17 0 30 12880761 39.81 1112461 ODFM-BA-A-0118-001 ODFM-BA-A-0118-001 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0118-001_Brettanomyces_anomalus_YV396 ODFM-BA-A-0118-001_Brettanomyces_anomalus_YV396 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Brettanomyces Brettanomyces anomalus beer beer Plant Grain barley beverage liquid medium none mesophilic 1 week - 3 months ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 100 0.21 69 11968539 38.13 924156 NA NA NA NA NA NA NA ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae beer beer Plant Grain barley beverage liquid medium none mesophilic 1 week - 3 months ODFM-BA-A-0127-001_Megasphaera_cerevisiae_NSB1 100 1.87 143 3006964 44.98 48664 ODFM-BA-A-0127-001 ODFM-BA-A-0127-001 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0127-001_Megasphaera_cerevisiae_NSB1 ODFM-BA-A-0127-001_Megasphaera_cerevisiae_NSB1 Bacillota;Negativicutes;Veillonellales;Megasphaeraceae;Megasphaera Megasphaera cerevisiae beer beer Plant Grain barley beverage liquid medium none mesophilic 1 week - 3 months ODFM-BA-A-0128-001_Pectinatus_frisingensis_MB139 99.79 1.27 1 2881049 38.27 2881049 ODFM-BA-A-0128-001 ODFM-BA-A-0128-001 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0128-001_Pectinatus_frisingensis_MB139 ODFM-BA-A-0128-001_Pectinatus_frisingensis_MB139 Bacillota;Negativicutes;Selenomonadales;Selenomonadaceae;Pectinatus Pectinatus frisingensis beer beer Plant Grain barley beverage liquid medium none mesophilic 1 week - 3 months DeRoosJ_2020__B13M__bin.7 78.14188466 0.995024876 76 1600813 54.09 32381 ERS2678306 ERR2756686 Belgium PRJEB28363 ERP110556 NCBI De Roos, J., Verce, M., Weckx, S., and De Vuyst, L. (2020). Temporal Shotgun Metagenomics Revealed the Potential Metabolic Capabilities of Specific Microorganisms During Lambic Beer Production. Front. Microbiol. 11, 1692. DeRoosJ_2020__B9M__bin.4 DeRoosJ_2020__B9M__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter ascendens beer beer Plant Grain barley beverage liquid medium none mesophilic 1 week - 3 months DeRoosJ_2020__B13M__bin.3 95.83333333 0 161 1986349 38.04 19448 ERS2678306 ERR2756686 Belgium PRJEB28363 ERP110556 NCBI De Roos, J., Verce, M., Weckx, S., and De Vuyst, L. (2020). Temporal Shotgun Metagenomics Revealed the Potential Metabolic Capabilities of Specific Microorganisms During Lambic Beer Production. Front. Microbiol. 11, 1692. DeRoosJ_2020__B13M__bin.3 DeRoosJ_2020__B13M__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus damnosus beer beer Plant Grain barley beverage liquid medium none mesophilic 1 week - 3 months DeRoosJ_2020__B13M__bin.2 65.9 0.2 1999 9341963 38.88 5659 ERS2678306 ERR2756686 Belgium PRJEB28363 ERP110556 NCBI De Roos, J., Verce, M., Weckx, S., and De Vuyst, L. (2020). Temporal Shotgun Metagenomics Revealed the Potential Metabolic Capabilities of Specific Microorganisms During Lambic Beer Production. Front. Microbiol. 11, 1692. GCF_011074885.1_ASM1107488v2_genomic DeRoosJ_2020__B13M__bin.2 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Brettanomyces Brettanomyces bruxellensis beer beer Plant Grain barley beverage liquid medium none mesophilic 1 week - 3 months DeRoosJ_2020__B24M__bin.3 97.17078189 0.257201646 218 1999896 37.99 12891 ERS2678307 ERR2756687 Belgium PRJEB28363 ERP110556 NCBI De Roos, J., Verce, M., Weckx, S., and De Vuyst, L. (2020). Temporal Shotgun Metagenomics Revealed the Potential Metabolic Capabilities of Specific Microorganisms During Lambic Beer Production. Front. Microbiol. 11, 1692. DeRoosJ_2020__B13M__bin.3 DeRoosJ_2020__B13M__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus damnosus beer beer Plant Grain barley beverage liquid medium none mesophilic 1 week - 3 months DeRoosJ_2020__B24M__bin.2 91.1 0.1 542 9591006 39.68 26959 ERS2678307 ERR2756687 Belgium PRJEB28363 ERP110556 NCBI De Roos, J., Verce, M., Weckx, S., and De Vuyst, L. (2020). Temporal Shotgun Metagenomics Revealed the Potential Metabolic Capabilities of Specific Microorganisms During Lambic Beer Production. Front. Microbiol. 11, 1692. DeRoosJ_2020__B24M__bin.2 DeRoosJ_2020__B24M__bin.2 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Brettanomyces Brettanomyces custersianus beer beer Plant Grain barley beverage liquid medium none mesophilic 1 week - 3 months DeRoosJ_2020__B3D__bin.2 85.5 1.3 1706 10227970 38.16 7788 ERS2678302 ERR2756682 Belgium PRJEB28363 ERP110556 NCBI De Roos, J., Verce, M., Weckx, S., and De Vuyst, L. (2020). Temporal Shotgun Metagenomics Revealed the Potential Metabolic Capabilities of Specific Microorganisms During Lambic Beer Production. Front. Microbiol. 11, 1692. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 DeRoosJ_2020__B3D__bin.2 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae beer beer Plant Grain barley beverage liquid medium none mesophilic 1 week - 3 months DeRoosJ_2020__B3M__bin.2 94.68283582 0.746268657 178 2569187 58.33 20599 ERS2678304 ERR2756684 Belgium PRJEB28363 ERP110556 NCBI De Roos, J., Verce, M., Weckx, S., and De Vuyst, L. (2020). Temporal Shotgun Metagenomics Revealed the Potential Metabolic Capabilities of Specific Microorganisms During Lambic Beer Production. Front. Microbiol. 11, 1692. GCF_011516885.1_ASM1151688v1_genomic GCF_011516885.1_ASM1151688v1_genomic Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lambici beer beer Plant Grain barley beverage liquid medium none mesophilic 1 week - 3 months DeRoosJ_2020__B3M__bin.1 62.56620125 0.080243942 51 1446184 54.1 49958 ERS2678304 ERR2756684 Belgium PRJEB28363 ERP110556 NCBI De Roos, J., Verce, M., Weckx, S., and De Vuyst, L. (2020). Temporal Shotgun Metagenomics Revealed the Potential Metabolic Capabilities of Specific Microorganisms During Lambic Beer Production. Front. Microbiol. 11, 1692. DeRoosJ_2020__B9M__bin.4 DeRoosJ_2020__B9M__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter ascendens beer beer Plant Grain barley beverage liquid medium none mesophilic 1 week - 3 months DeRoosJ_2020__B3W__bin.1 78.5 1.5 1522 9491590 38.1 7605 ERS2678303 ERR2756683 Belgium PRJEB28363 ERP110556 NCBI De Roos, J., Verce, M., Weckx, S., and De Vuyst, L. (2020). Temporal Shotgun Metagenomics Revealed the Potential Metabolic Capabilities of Specific Microorganisms During Lambic Beer Production. Front. Microbiol. 11, 1692. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 DeRoosJ_2020__B3D__bin.2 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae beer beer Plant Grain barley beverage liquid medium none mesophilic 1 week - 3 months DeRoosJ_2020__B9M__bin.4 96.56769914 0.111338469 125 2509684 52.11 32656 ERS2678305 ERR2756685 Belgium PRJEB28363 ERP110556 NCBI De Roos, J., Verce, M., Weckx, S., and De Vuyst, L. (2020). Temporal Shotgun Metagenomics Revealed the Potential Metabolic Capabilities of Specific Microorganisms During Lambic Beer Production. Front. Microbiol. 11, 1692. DeRoosJ_2020__B9M__bin.4 DeRoosJ_2020__B9M__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter ascendens beer beer Plant Grain barley beverage liquid medium none mesophilic 1 week - 3 months DeRoosJ_2020__B9M__bin.2 95.83333333 0.205761317 206 1940625 37.94 12159 ERS2678305 ERR2756685 Belgium PRJEB28363 ERP110556 NCBI De Roos, J., Verce, M., Weckx, S., and De Vuyst, L. (2020). Temporal Shotgun Metagenomics Revealed the Potential Metabolic Capabilities of Specific Microorganisms During Lambic Beer Production. Front. Microbiol. 11, 1692. DeRoosJ_2020__B13M__bin.3 DeRoosJ_2020__B13M__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus damnosus beer beer Plant Grain barley beverage liquid medium none mesophilic 1 week - 3 months DeRoosJ_2020__B9M__bin.3 72.74988693 2.487562189 402 1931761 58.89 5759 ERS2678305 ERR2756685 Belgium PRJEB28363 ERP110556 NCBI De Roos, J., Verce, M., Weckx, S., and De Vuyst, L. (2020). Temporal Shotgun Metagenomics Revealed the Potential Metabolic Capabilities of Specific Microorganisms During Lambic Beer Production. Front. Microbiol. 11, 1692. GCF_011516885.1_ASM1151688v1_genomic GCF_011516885.1_ASM1151688v1_genomic Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lambici beer beer Plant Grain barley beverage liquid medium none mesophilic 1 week - 3 months HeilCS_2018__Old_Warehouse_metagenome__bin.8 76.0002762 0.01953125 424 1805201 46.25 4890 SRS2402535 SRR5890763 USA PRJNA390460 SRP114698 NCBI Smukowski Heil, C., Burton, J.N., Liachko, I., Friedrich, A., Hanson, N.A., Morris, C.L., Schacherer, J., Shendure, J., Thomas, J.H., and Dunham, M.J. (2018). Identification of a novel interspecific hybrid yeast from a metagenomic spontaneously inoculated beer sample using Hi-C. Yeast 35, 71–84. MotaGutierrezJ_2021__SRR11602150__bin.9 HeilCS_2018__Old_Warehouse_metagenome__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis beer beer Plant Grain barley beverage liquid medium none mesophilic 1 week - 3 months HeilCS_2018__Old_Warehouse_metagenome__bin.1 68.98148148 0 101 1587882 38.35 24294 SRS2402535 SRR5890763 USA PRJNA390460 SRP114698 NCBI Smukowski Heil, C., Burton, J.N., Liachko, I., Friedrich, A., Hanson, N.A., Morris, C.L., Schacherer, J., Shendure, J., Thomas, J.H., and Dunham, M.J. (2018). Identification of a novel interspecific hybrid yeast from a metagenomic spontaneously inoculated beer sample using Hi-C. Yeast 35, 71–84. DeRoosJ_2020__B13M__bin.3 DeRoosJ_2020__B13M__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus damnosus beer beer Plant Grain barley beverage liquid medium none mesophilic 1 week - 3 months HeilCS_2018__Old_Warehouse_metagenome__bin.12 58.59011395 0 28 1307313 54 68569 SRS2402535 SRR5890763 USA PRJNA390460 SRP114698 NCBI Smukowski Heil, C., Burton, J.N., Liachko, I., Friedrich, A., Hanson, N.A., Morris, C.L., Schacherer, J., Shendure, J., Thomas, J.H., and Dunham, M.J. (2018). Identification of a novel interspecific hybrid yeast from a metagenomic spontaneously inoculated beer sample using Hi-C. Yeast 35, 71–84. G_24_1A_oryzifermentans_assembly HeilCS_2018__Old_Warehouse_metagenome__bin.12 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter oryzifermentans beer beer Plant Grain barley beverage liquid medium none mesophilic 1 week - 3 months HeilCS_2018__Old_Warehouse_metagenome__bin.2 84.8 0.5 319 9179069 38.52 47843 SRS2402535 SRR5890763 USA PRJNA390460 SRP114698 NCBI Smukowski Heil, C., Burton, J.N., Liachko, I., Friedrich, A., Hanson, N.A., Morris, C.L., Schacherer, J., Shendure, J., Thomas, J.H., and Dunham, M.J. (2018). Identification of a novel interspecific hybrid yeast from a metagenomic spontaneously inoculated beer sample using Hi-C. Yeast 35, 71–84. MASTER_WP4_CSIC_2__P2597__bin.1 MASTER_WP4_CSIC_2__P2597__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia kudriavzevii beer beer Plant Grain barley beverage liquid medium none mesophilic 1 week - 3 months HeilCS_2018__Old_Warehouse_metagenome__bin.6 99 3.3 501 12016729 38.21 39577 SRS2402535 SRR5890763 USA PRJNA390460 SRP114698 NCBI Smukowski Heil, C., Burton, J.N., Liachko, I., Friedrich, A., Hanson, N.A., Morris, C.L., Schacherer, J., Shendure, J., Thomas, J.H., and Dunham, M.J. (2018). Identification of a novel interspecific hybrid yeast from a metagenomic spontaneously inoculated beer sample using Hi-C. Yeast 35, 71–84. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae beer beer Plant Grain barley beverage liquid medium none mesophilic 1 week - 3 months GCF_001436275.1_ASM143627v1_genomic 99.48 0 31 2114211 37.33 412601 GCF_001436275.1 GCF_001436275.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001436275.1_ASM143627v1_genomic GCF_001436275.1_ASM143627v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus oeni wine bobal bobal_wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months YasirM_2022__SRR18335011__bin.1 100 1.26 262 3409834 46.72 18718 SAMN26688211 SRR18335011 Bolivia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. YasirM_2022__SRR18335011__bin.1 YasirM_2022__SRR18335011__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus pentosus pickle bolivian bolivan_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335011__bin.2 78.56 1.89 310 1778137 52.91 7342 SAMN26688211 SRR18335011 Bolivia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. YasirM_2022__SRR18335012__bin.3 YasirM_2022__SRR18335011__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus namurensis A pickle bolivian bolivan_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335011__bin.3 82.54 0.22 120 1775931 37.29 24948 SAMN26688211 SRR18335011 Bolivia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. YasirM_2022__SRR18335001__bin.1 YasirM_2022__SRR18335001__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus ethanolidurans pickle bolivian bolivan_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335011__bin.5 91.5 1.49 154 1642768 36.08 19572 SAMN26688211 SRR18335011 Bolivia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. YasirM_2022__SRR18334997__bin.9 YasirM_2022__SRR18334997__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus acetotolerans pickle bolivian bolivan_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335011__bin.7 61.83 2.36 407 1470926 52.64 3940 SAMN26688211 SRR18335011 Bolivia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. LiZ_2019__SRS3379169__bin.2 YasirM_2022__SRR18335011__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus suantsaii pickle bolivian bolivan_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335012__bin.2 91.73 0.39 151 1577278 36.21 18618 SAMN26688210 SRR18335012 Bolivia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. YasirM_2022__SRR18334997__bin.9 YasirM_2022__SRR18334997__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus acetotolerans pickle bolivian bolivan_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335012__bin.3 98.57 0.26 110 2397030 52.39 32409 SAMN26688210 SRR18335012 Bolivia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. YasirM_2022__SRR18335012__bin.3 YasirM_2022__SRR18335012__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus namurensis A pickle bolivian bolivan_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335012__bin.5 71.61 1.32 600 2194824 47.87 4057 SAMN26688210 SRR18335012 Bolivia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. YasirM_2022__SRR18335011__bin.1 YasirM_2022__SRR18335012__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus pentosus pickle bolivian bolivan_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335012__bin.6 85.61 4.38 306 2109325 37.6 12615 SAMN26688210 SRR18335012 Bolivia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. YasirM_2022__SRR18335001__bin.1 YasirM_2022__SRR18335001__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus ethanolidurans pickle bolivian bolivan_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18334997__bin.10 97.75 2.31 261 2552383 46.03 16434 SAMN26688209 SRR18334997 Bolivia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. DeFilippisF_xxxx__DF_96__bin.15 DeFilippisF_xxxx__DF_96__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parafarraginis pickle bolivian bolivian_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18334997__bin.2 90.88 0.14 70 2230271 52.5 53673 SAMN26688209 SRR18334997 Bolivia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. YasirM_2022__SRR18335012__bin.3 YasirM_2022__SRR18335012__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus namurensis A pickle bolivian bolivian_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18334997__bin.4 88.38 0.34 140 1823992 37.41 26396 SAMN26688209 SRR18334997 Bolivia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. YasirM_2022__SRR18335001__bin.1 YasirM_2022__SRR18335001__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus ethanolidurans pickle bolivian bolivian_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18334997__bin.7 61.16 0.59 251 1956456 46.32 9938 SAMN26688209 SRR18334997 Bolivia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. YasirM_2022__SRR18335011__bin.1 YasirM_2022__SRR18334997__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus pentosus pickle bolivian bolivian_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18334997__bin.9 99.09 0.56 234 1725806 36.41 11510 SAMN26688209 SRR18334997 Bolivia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. YasirM_2022__SRR18334997__bin.9 YasirM_2022__SRR18334997__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus acetotolerans pickle bolivian bolivian_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967692__bin.5 100 0.995024876 27 3290950 57.53 195341 ERS3967692 ERR4757807 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK067-1-L-48h-05C1_S71__bin.5 LeechJ_2020__ERS3967692__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter malorum boza boza Plant Grain millet beverage liquid low mixed mesophilic 3-7 days LeechJ_2020__ERS3967692__bin.3 83.13443073 3.395061728 507 2672205 43.57 6845 ERS3967692 ERR4757807 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967692__bin.3 LeechJ_2020__ERS3967692__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus NA boza boza Plant Grain millet beverage liquid low mixed mesophilic 3-7 days LeechJ_2020__ERS3967692__bin.2 99.375 0.625 65 1268015 34.51 29759 ERS3967692 ERR4757807 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LandisEA_2021__SRS5653399__bin.4 LandisEA_2021__SRS5653399__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Fructilactobacillus Fructilactobacillus sanfranciscensis boza boza Plant Grain millet beverage liquid low mixed mesophilic 3-7 days LeechJ_2020__ERS3967692__bin.7 97.47942387 3.347050754 80 2830072 45.45 53828 ERS3967692 ERR4757807 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. GCF_001438845.1_ASM143884v1_genomic LeechJ_2020__ERS3967692__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus xiangfangensis boza boza Plant Grain millet beverage liquid low mixed mesophilic 3-7 days LeechJ_2020__ERS3967692__bin.1 98.75 1.163194444 163 2786593 51.13 25734 ERS3967692 ERR4757807 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. GCF_003946045.1_ASM394604v1_genomic GCF_003946045.1_ASM394604v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus mulengensis boza boza Plant Grain millet beverage liquid low mixed mesophilic 3-7 days LeechJ_2020__ERS3967692__bin.4 99.47643979 0.523560209 18 2651968 35.28 506896 ERS3967692 ERR4757807 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967692__bin.4 LeechJ_2020__ERS3967692__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus sp937874185 boza boza Plant Grain millet beverage liquid low mixed mesophilic 3-7 days LeechJ_2020__ERS3967692__bin.6 52.9 0.9 2091 7992361 43.97 4374 ERS3967692 ERR4757807 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967694__bin.5 LeechJ_2020__ERS3967694__bin.5 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kazachstania Kazachstania saulgeensis boza boza Plant Grain millet beverage liquid low mixed mesophilic 3-7 days GCF_019656055.1_ASM1965605v1_genomic 99.44 0.97 12 1913501 36.35 243452 GCF_019656055.1 GCF_019656055.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_019656055.1_ASM1965605v1_genomic GCF_019656055.1_ASM1965605v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc miyukkimchii kimchi wakame brown_algae_kimchi Plant Vegetables_Aromatics seaweed pickled vegetables solid low lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967706__bin.3 99.07834101 0 48 2187831 60.24 72674 ERS3967706 ERR4757821 Japan PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967706__bin.3 LeechJ_2020__ERS3967706__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium longum amazake brown_rice_amazake Plant Grain rice beverage semi-solid low lactic thermophilic 3-7 days LeechJ_2020__ERS3967706__bin.2 65.51724138 0 29 1102397 47.18 73420 ERS3967706 ERR4757821 Japan PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967703__bin.6 LeechJ_2020__ERS3967703__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus mucosae amazake brown_rice_amazake Plant Grain rice beverage semi-solid low lactic thermophilic 3-7 days LeechJ_xxxx__AF30__bin.2 66.68444807 0.485908478 293 1012238 39.64 3676 SAMN39472449 SRR27593220 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 LeechJ_xxxx__AF30__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus brukina brukina_millet_with_fermented_milk Mixed Grain_Dairy millet/milk beverage liquid low lactic mesophilic 1-2 days LeechJ_xxxx__AF30__bin.1 67.24137931 0 24 897074 50.68 49704 SAMN39472449 SRR27593220 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii brukina brukina_millet_with_fermented_milk Mixed Grain_Dairy millet/milk beverage liquid low lactic mesophilic 1-2 days EBC_088.16 96.18 1.36 101 4744704 52.05 92070 SAMN40633082 SRS20892318 Myanmar PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_088.16 EBC_088.16 Bacillota;Bacilli;Brevibacillales;Brevibacillaceae;Brevibacillus Brevibacillus borstelensis natto burmese_natto Plant Legumes soybean soybean solids solid none lactic mesophilic 1-7 days EBC_088.26 95.26 1.44 134 1980960 37.66 29246 SAMN40633082 SRS20892318 Myanmar PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 DeFilippisF_xxxx__DF_104__bin.4 EBC_088.26 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus macedonicus natto burmese_natto Plant Legumes soybean soybean solids solid none lactic mesophilic 1-7 days EBC_088.5 98.33 0.72 84 4142074 46.52 98731 SAMN40633082 SRS20892318 Myanmar PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_088.5 EBC_088.5 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus glycinifermentans natto burmese_natto Plant Legumes soybean soybean solids solid none lactic mesophilic 1-7 days LeechJ_xxxx__AF31__bin.3 100 0 68 2534896 60.83 65296 SAMN39472450 SRR27593219 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF31__bin.3 LeechJ_xxxx__AF31__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter peroxydans burukutu burukutu Plant Grain sorghum/millet beverage liquid medium lactic mesophilic 3-7 days LeechJ_xxxx__AF31__bin.6 91.12246684 1.523832451 290 2490944 54.49 12358 SAMN39472450 SRR27593219 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK027-1-L-48h-02I4_S14__bin.10 LeechJ_xxxx__AF31__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter indonesiensis burukutu burukutu Plant Grain sorghum/millet beverage liquid medium lactic mesophilic 3-7 days LeechJ_xxxx__AF31__bin.5 90.08587041 1.051975523 254 1498704 53.6 7605 SAMN39472450 SRR27593219 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF31__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum burukutu burukutu Plant Grain sorghum/millet beverage liquid medium lactic mesophilic 3-7 days LeechJ_xxxx__AF31__bin.7 87.66233766 0 31 1305465 50.59 78108 SAMN39472450 SRR27593219 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic LeechJ_xxxx__AF31__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii burukutu burukutu Plant Grain sorghum/millet beverage liquid medium lactic mesophilic 3-7 days LeechJ_xxxx__AF31__bin.1 61.3 0 1963 7392095 41.61 4310 SAMN39472450 SRR27593219 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-08h-03F3_S67__bin.4 MortensenS_xxxx__WK040-2-L-08h-03F3_S67__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Lachancea Lachancea fermentati burukutu burukutu Plant Grain sorghum/millet beverage liquid medium lactic mesophilic 3-7 days LeechJ_xxxx__AF31__bin.2 89.3 2.1 1638 10909406 38.2 8857 SAMN39472450 SRR27593219 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae burukutu burukutu Plant Grain sorghum/millet beverage liquid medium lactic mesophilic 3-7 days LeechJ_xxxx__AF40__bin.3 77.92627229 1.731601732 373 1504687 37.07 4747 SAMN39472459 SRR27593209 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 LeechJ_xxxx__AF40__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus burukutu burukutu Plant Grain sorghum/millet beverage liquid medium lactic mesophilic 3-7 days LeechJ_xxxx__AF40__bin.1 97.4 2 841 11063495 38.24 21574 SAMN39472459 SRR27593209 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae burukutu burukutu Plant Grain sorghum/millet beverage liquid medium lactic mesophilic 3-7 days LeechJ_xxxx__AF67__bin.1 93.71584699 0.136612022 163 1582041 53.55 14138 SAMN39472486 SRR27593175 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF66__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum burukutu burukutu Plant Grain sorghum/millet beverage liquid medium lactic mesophilic 3-7 days LeechJ_xxxx__AF67__bin.2 91.95198741 0.76469583 284 1580095 36.6 7258 SAMN39472486 SRR27593175 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 LeechJ_xxxx__AF41__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus burukutu burukutu Plant Grain sorghum/millet beverage liquid medium lactic mesophilic 3-7 days LeechJ_xxxx__AF67__bin.5 65.87251829 1.724137931 311 984694 51.63 3513 SAMN39472486 SRR27593175 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic LeechJ_xxxx__AF67__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii burukutu burukutu Plant Grain sorghum/millet beverage liquid medium lactic mesophilic 3-7 days LeechJ_xxxx__AF67__bin.3 97.7 2.1 928 11097540 38.28 18401 SAMN39472486 SRR27593175 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae burukutu burukutu Plant Grain sorghum/millet beverage liquid medium lactic mesophilic 3-7 days LeechJ_xxxx__AF67__bin.4 62.7 1 2742 8121960 32.51 3163 SAMN39472486 SRR27593175 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF67__bin.4 LeechJ_xxxx__AF67__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kazachstania Kazachstania bovina burukutu burukutu Plant Grain sorghum/millet beverage liquid medium lactic mesophilic 3-7 days GCF_004771075.1_ASM477107v1_genomic 99.08 0 2 2216758 45.06 2212145 GCF_004771075.1 GCF_004771075.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_004771075.1_ASM477107v1_genomic GCF_004771075.1_ASM477107v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella confusa cabbage cabbage Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_001435525.1_ASM143552v1_genomic 99.38 0.62 98 2950098 49.16 67052 GCF_001435525.1 GCF_001435525.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001435525.1_ASM143552v1_genomic GCF_001435525.1_ASM143552v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus koreensis kimchi cabbage_kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967742__bin.2 68.98680124 0.815217391 305 1336003 41.24 5157 ERS3967742 ERR4757857 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 LeechJ_2020__ERS3967742__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei carrot sticks carrot_sticks Plant Vegetables_Aromatics carrot pickled vegetables solid unknown unknown unknown unknown LeechJ_2020__ERS3967742__bin.1 97.99382716 0.019290123 83 1878745 38.57 39142 ERS3967742 ERR4757857 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LandisEA_2021__SRS5653132__bin.1 LeechJ_2020__ERS3967742__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus inopinatus carrot sticks carrot_sticks Plant Vegetables_Aromatics carrot pickled vegetables solid unknown unknown unknown unknown LeechJ_2020__ERS3967742__bin.3 93.4 1.4 1616 11581173 33.96 10420 ERS3967742 ERR4757857 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967742__bin.3 LeechJ_2020__ERS3967742__bin.3 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kazachstania Kazachstania barnettii carrot sticks carrot_sticks Plant Vegetables_Aromatics carrot pickled vegetables solid unknown unknown unknown unknown GCF_009184845.1_ASM918484v1_genomic 99.48 1.05 2 3458698 47.84 3395916 GCF_009184845.1 GCF_009184845.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_009184845.1_ASM918484v1_genomic GCF_009184845.1_ASM918484v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus manihotivorans cassava sour starch cassava_sour_starch_fermentation Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 20-70 days GCA_001747045.1_ASM174704v1_genomic 94.41 0 17 11458415 37.14 1273072 GCA_001747045.1 GCA_001747045.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 SternesPR_2017__Y2D1_B_shotgun__bin.4 SternesPR_2017__Y2D1_B_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycodaceae;Hanseniaspora Hanseniaspora osmophila wine chardonnay chardonnay_must Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months GCF_001434055.1_ASM143405v1_genomic 99.38 0 110 2608012 49.06 58398 GCF_001434055.1 GCF_001434055.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001434055.1_ASM143405v1_genomic GCF_001434055.1_ASM143405v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus parabrevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_2018__SRR6514658__bin.4 65.07 0 266 5427328 56.26 36096 SAMN08379449 SRR6514658 Italy PRJNA430402 SRP131494 NCBI Pasolli E, De Filippis F, Mauriello IE, Cumbo F, Walsh AM, Leech J, Cotter PD, Segata N, Ercolini D. Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat Commun. 2020 May 25;11(1):2610. doi: 10.1038/s41467-020-16438-8. FontanaF_2023__SRR20746851__bin.6 FontanaF_2023__SRR20746851__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella grimontii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months C-R03.bin.3 95.24 0.21 802 13243811 53.72 25225 SAMN17450162 SRR13496622 Brazil PRJNA693797 SRP302686 NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 C-R03.bin.3 C-R03.bin.3 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Scheffersomyces Scheffersomyces stipitis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 100 0 893 25984205 48.91 70366 ODFM-BA-A-0144-001 ODFM-BA-A-0144-001 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months ODFM-BA-A-0132-001_Pseudomonas_lactis_ITEM_17295 99.8 0.89 35 6279244 59.83 351021 ODFM-BA-A-0132-001 ODFM-BA-A-0132-001 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. LeechJ_xxxx__AF54__bin.1 ODFM-BA-A-0132-001_Pseudomonas_lactis_ITEM_17295 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E paracarnis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months ODFM-BA-A-0133-001_Listeria_monocytogenes_N11-2542 99.45 0 13 2936396 37.86 584723 ODFM-BA-A-0133-001 ODFM-BA-A-0133-001 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0133-001_Listeria_monocytogenes_N11-2542 ODFM-BA-A-0133-001_Listeria_monocytogenes_N11-2542 Bacillota;Bacilli;Lactobacillales;Listeriaceae;Listeria Listeria monocytogenes cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months ODFM-BA-A-0135-001_Lactobacillus_rhamnosus_DPC_7102 99.46 0 88 3059732 46.59 159036 ODFM-BA-A-0135-001 ODFM-BA-A-0135-001 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. CM_UNINA_FFOOD__FFOOD_337__bin.6 ODFM-BA-A-0135-001_Lactobacillus_rhamnosus_DPC_7102 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months ODFM-BA-A-0136-001_Staphylococcus_aureus_18SBCL679 99.51 0.11 6 2766255 33.01 2719626 ODFM-BA-A-0136-001 ODFM-BA-A-0136-001 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0136-001_Staphylococcus_aureus_18SBCL679 ODFM-BA-A-0136-001_Staphylococcus_aureus_18SBCL679 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus aureus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months ODFM-BA-A-0138-001_Hafnia_alvei_B16-3 100 0.34 73 4968566 48.64 227469 ODFM-BA-A-0138-001 ODFM-BA-A-0138-001 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. Wy2_bin.circ.3 Wy2_bin.circ.3 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia alvei B cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months ODFM-BA-A-0139-001_Enterococcus_lactis_CICC_24101 99.62 0 53 2867482 38.14 169009 ODFM-BA-A-0139-001 ODFM-BA-A-0139-001 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0139-001_Enterococcus_lactis_CICC_24101 ODFM-BA-A-0139-001_Enterococcus_lactis_CICC_24101 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months ODFM-BA-A-0141-001_Corynebacterium_flavescens_CCUG_28791T 99.78 0 46 2696142 59.99 144965 ODFM-BA-A-0141-001 ODFM-BA-A-0141-001 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0141-001_Corynebacterium_flavescens_CCUG_28791T ODFM-BA-A-0141-001_Corynebacterium_flavescens_CCUG_28791T Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium flavescens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months ODFM-BA-A-0142-001_Halomonas_nigrificans_MBT_G8648 99.57 0.93 84 4929385 52.8 184686 ODFM-BA-A-0142-001 ODFM-BA-A-0142-001 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0142-001_Halomonas_nigrificans_MBT_G8648 ODFM-BA-A-0142-001_Halomonas_nigrificans_MBT_G8648 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella nigrificans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months ODFM-BA-A-0147-001_Streptococcus_thermophilus_C106 99.89 0.15 85 1769014 38.94 51966 ODFM-BA-A-0147-001 ODFM-BA-A-0147-001 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 100 0.19 233 2354698 35.51 18456 ODFM-BA-A-0148-001 ODFM-BA-A-0148-001 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months ODFM-BA-A-0149-001_Enterococcus_malodoratus_DSM_20681 98.94 4.71 103 4501562 39.89 108828 ODFM-BA-A-0149-001 ODFM-BA-A-0149-001 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0149-001_Enterococcus_malodoratus_DSM_20681 ODFM-BA-A-0149-001_Enterococcus_malodoratus_DSM_20681 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_A Enterococcus A malodoratus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months ODFM-BA-A-0154-001_Lactobacillus_helveticus_NWC_2_4 98.38 0 3 2230130 37.38 2177422 ODFM-BA-A-0154-001 ODFM-BA-A-0154-001 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. FontanaF_2023__SRR20746979__bin.3 ODFM-BA-A-0154-001_Lactobacillus_helveticus_NWC_2_4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months ODFM-BA-A-0156-001_Mycetocola_reblochoni_JCM_30549 97.05 1.77 29 3046112 70.46 300101 ODFM-BA-A-0156-001 ODFM-BA-A-0156-001 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0156-001_Mycetocola_reblochoni_JCM_30549 ODFM-BA-A-0156-001_Mycetocola_reblochoni_JCM_30549 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Mycetocola_B Mycetocola B reblochoni cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months ODFM-BA-A-0157-001_Morganella_morganii_FAM24091 100 0 54 4196267 50.26 165355 ODFM-BA-A-0157-001 ODFM-BA-A-0157-001 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0157-001_Morganella_morganii_FAM24091 ODFM-BA-A-0157-001_Morganella_morganii_FAM24091 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Morganella Morganella sibonii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months ODFM-BA-A-0158-001_Glutamicibacter_arilaitensis_JB182 99.74 0.54 12 3947886 59.16 2242708 ODFM-BA-A-0158-001 ODFM-BA-A-0158-001 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. MAG_323 O6_bin.circ.2 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months ODFM-BA-A-0160-001_Vibrio_casei_JB196 96.01 0.84 9 3982021 40.62 2243403 ODFM-BA-A-0160-001 ODFM-BA-A-0160-001 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0160-001_Vibrio_casei_JB196 ODFM-BA-A-0160-001_Vibrio_casei_JB196 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months ODFM-BA-A-0166-001_Staphylococcus_xylosus_BC10 99.44 1.94 19 2771345 32.61 473037 ODFM-BA-A-0166-001 ODFM-BA-A-0166-001 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months ODFM-BA-A-0167-001_Staphylococcus_succinus_BC15 99.45 0.83 21 2740339 32.97 559501 ODFM-BA-A-0167-001 ODFM-BA-A-0167-001 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0167-001_Staphylococcus_succinus_BC15 ODFM-BA-A-0167-001_Staphylococcus_succinus_BC15 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus succinus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months ODFM-BA-A-0172-001_Clostridium_tyrobutyricum_FAM22553 99.49 0.23 48 3081187 31.01 187297 ODFM-BA-A-0172-001 ODFM-BA-A-0172-001 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0172-001_Clostridium_tyrobutyricum_FAM22553 ODFM-BA-A-0172-001_Clostridium_tyrobutyricum_FAM22553 Bacillota;Clostridia;Clostridiales;Clostridiaceae;Clostridium_B Clostridium B tyrobutyricum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months ODFM-BA-A-0174-001_Clostridium_botulinum_CDC66089 91 1.2 1091 3443793 28.92 4115 ODFM-BA-A-0174-001 ODFM-BA-A-0174-001 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. LeechJ_xxxx__AF57__bin.1 ODFM-BA-A-0174-001_Clostridium_botulinum_CDC66089 Bacillota;Clostridia;Clostridiales;Clostridiaceae;Clostridium_F Clostridium F botulinum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_7 97.68 1.74 416 3212418 41.93 10709 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. 181 MAG_7 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_13 60.74 8.69 1347 3588902 55.54 2665 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. We6_bin.full.92 MAG_13 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Serratia Serratia proteamaculans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_14 67.97 1.25 246 1631670 39.15 8094 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. WalshL_xxxx__V9__bin.2 MAG_14 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_20 93.48 0.98 398 6284991 68.01 24616 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. WalshAM_2020__ERS3466771__bin.2 WalshAM_2020__ERS3466771__bin.2 Actinomycetota;Actinomycetes;Streptomycetales;Streptomycetaceae;Streptomyces NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_23 78.03 7.97 328 2859668 67.48 10337 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. 160 MAG_23 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_29 75.1 0.58 237 2054462 69.24 10143 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MAG_29 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_32 97.21 1.57 39 1659594 36.98 86166 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. CM_UNINA_FFOOD__FFOOD_229__bin.10 GCF_007954525.1_ASM795452v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc carnosum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_38 97.99 6.4 135 2410245 36.68 30535 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. DeFilippisF_xxxx__DS_2__bin.27 DeFilippisF_xxxx__DS_2__bin.27 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus koreensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_42 66.96 7.83 947 2431185 68.91 2600 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_CSIC_2__P2570__bin.32 MAG_42 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_43 97.91 1.69 263 3305000 67.59 17608 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_TEAGASC_1__TGS11-30__bin.13 MASTER_WP4_TEAGASC_1__TGS11-30__bin.13 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_47 80.92 4.43 939 3445545 57.15 4283 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MAG_47 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_50 87.18 2.69 585 2183588 33.46 4311 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. YangC_2021__SRR13259378__bin.4 MAG_50 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_51 53.73 1.42 914 2499117 40.41 2877 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0160-001_Vibrio_casei_JB196 MAG_51 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_56 74.34 1.82 1109 3141048 55.56 2944 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. We6_bin.full.92 MAG_56 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Serratia Serratia proteamaculans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_61 89.59 1.16 482 2249436 35.51 5618 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_501 MAG_61 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_66 62.69 0.37 622 1751144 44.92 3028 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FalardeauJ_2023__SRR20811279__bin.3 MAG_66 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_72 100 0.52 41 4685330 42.51 162535 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_72 MAG_72 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Marinomonadaceae;Marinomonas Marinomonas sp012726345 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_73 99.36 0.55 51 2850684 44.91 89186 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. 180 MacoriG_2019__CS_R32__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter namhaensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_74 87.16 8.26 1052 3198414 68.86 3241 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_CSIC_2__P2570__bin.32 MAG_74 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_76 97.81 0.73 125 2087286 39.39 26473 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_76 MAG_76 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Marinilactibacillus Marinilactibacillus piezotolerans A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_78 73.51 5.33 554 2205363 35.6 4282 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_501 MAG_78 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_79 56.97 1.63 926 2399383 62.97 2589 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. We6_bin.circ.9 WalshAM_2020__ERS3466751__bin.7 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_81 59.06 5.91 75 1319786 35.71 24896 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_TEAGASC_1__TGS01-28__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_82 99.14 0.43 96 3877167 62.82 60669 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_82 MAG_82 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Cobetia Cobetia amphilecti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_83 76.76 0 34 2681489 38.01 208689 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MacoriG_2019__CS_R4__bin.7 MacoriG_2019__CS_R4__bin.7 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Proteus Proteus hauseri B cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_84 99.89 0.8 47 1880367 38.65 67856 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_85 50 0 290 1886736 35.36 8021 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MAG_85 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_86 89.15 1.29 317 1784092 38.62 7266 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. Wy2_bin.circ.1 MAG_86 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_88 57.28 0.34 299 900801 37.06 3247 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746979__bin.3 MAG_88 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_89 94.56 1.97 630 4624615 55.26 9471 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. We6_bin.full.92 MAG_89 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Serratia Serratia proteamaculans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_90 91.88 1.46 780 3717971 39.56 5814 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_90 MAG_90 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas sp030408135 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_93 97.08 6.35 123 1663021 36.61 19194 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_101 67.24 0.28 334 1056173 37.18 3303 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746979__bin.3 MAG_101 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_102 100 1.1 80 3881253 53.69 86674 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. We6_bin.full.31 MacoriG_2019__CS_R7__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_105 70.14 2.37 670 2405890 43.7 3944 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746954__bin.5 MAG_105 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter faecalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_106 97.12 1.75 422 3659576 70.1 12967 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. 183 MacoriG_2019__CS_R44__bin.13 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_110 79.33 2.13 655 2571382 69.31 4618 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_CSIC_2__P2570__bin.32 MAG_110 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_114 59.6 8.4 1138 3363481 40.39 3177 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FalardeauJ_2023__SRR20811282__bin.3 MAG_114 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_117 89.41 6.37 614 2750983 45.02 5469 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FalardeauJ_2023__SRR20811279__bin.3 LandisEA_2021__SRS5653391__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_118 99.12 0.44 78 3025928 55.34 72018 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_122 98.57 0.04 64 4398221 50.77 107420 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LeechJ_2020__ERS3967688__bin.2 MAG_122 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_124 99.35 0.58 215 4933670 55.12 35851 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746854__bin.2 LeechJ_2020__ERS3967698__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter Enterobacter intestinihominis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_127 97.87 1.11 80 4409016 48.09 87245 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FalardeauJ_2023__SRR20811137__bin.9 MacoriG_2019__CS_R36__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia paralvei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_128 64.29 2.05 231 1863866 67.57 9680 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_FFoQSI_1__VB-05-BG__bin.13 MAG_128 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_130 51.65 8.46 973 2564415 44.44 2791 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. WalshAM_2020__ERS3466749__bin.4 MAG_130 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio litoralis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_137 98.02 0.6 227 3185934 41.98 21643 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. 181 181 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_141 56.4 1.6 522 1528350 34.05 3064 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MAG_141 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_145 71.27 10 341 3644085 36.3 13800 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_145 MAG_145 Bacillota;Bacilli;Bacillales_D;Amphibacillaceae;Oceanobacillus NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_147 96.18 0 44 1946022 38.12 120962 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. CM_UNINA_FFOOD__FFOOD_418__bin.8 CM_UNINA_FFOOD__FFOOD_418__bin.8 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus petauri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_153 59.48 7.68 1279 3017488 41.56 2338 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. We2_bin.full.36 MAG_153 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas prydzensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_155 99.44 1.53 97 3189648 32.95 177929 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_158 94.29 3.84 294 2423222 43.33 10840 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LandisEA_2021__SRS5653333__bin.1 MAG_158 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_167 93 0.87 470 3374266 62.8 9718 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. We6_bin.circ.9 MAG_167 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_169 97.93 0.92 107 1792846 39.03 23011 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. Wy2_bin.circ.1 MAG_169 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_170 87.85 2.9 267 3084566 43.05 16057 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_TEAGASC_1__TGS01-22__bin.24 BertuzziAS_2018__ERS2032116__bin.10 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter aquimaris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_172 87.24 8.85 560 2264724 68.75 5038 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. 160 WalshAM_2020__ERS3466776__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_174 84.29 2.28 415 2508888 46.54 7217 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746951__bin.4 MAG_174 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_175 98.95 0.59 45 2264766 38.31 75122 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_176 97.61 0.71 65 2626228 48.65 56527 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_176 MAG_176 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_180 52.87 6.41 482 1306576 35.16 2777 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_180 MAG_180 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus carnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_189 57.47 1.72 199 2111207 34.72 16070 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_501 MAG_189 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_191 68.18 0.29 297 1235060 34.75 4741 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_191 MAG_191 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus Vagococcus sp003462485 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_309 72.93 1.8 488 1665218 53.74 3850 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_UNINA_2__C-22__bin.5 MAG_309 Bacillota;Bacilli;Bacillales;Anoxybacillaceae;Geobacillus Geobacillus stearothermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_310 66.81 0.42 232 1247867 68.03 6624 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. DeFilippisF_xxxx__DF_58__bin.5 MAG_310 Deinococcota;Deinococci;Deinococcales;Thermaceae;Thermus Thermus parvatiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_311 58.62 3.45 152 2396611 33.31 88621 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MAG_311 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_312 99.73 0.05 90 3453700 39.03 68248 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_312 MAG_312 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter baumannii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_313 99.44 0 22 2530825 33.02 323756 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_314 83.03 0.02 142 1867443 41.74 21078 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_314 MAG_314 Bacillota;Bacilli;Bacillales;Anoxybacillaceae;Anoxybacillus Anoxybacillus flavithermus G cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_315 96.37 0 87 3342340 59.35 60813 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_323 BertuzziAS_2018__ERS2032111__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_316 99.18 0 40 2783037 46.48 102877 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_317 98.87 0.6 77 3029626 67.63 73109 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FalardeauJ_2023__SRR20811223__bin.4 MAG_317 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_318 51.16 1.28 49 2518792 64.59 100243 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. BertuzziAS_2018__ERS2032125__bin.2 MAG_318 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium linens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_319 99.44 1.94 31 2736890 32.67 346324 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_320 100 0 60 4002801 63 134113 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. We6_bin.circ.9 MAG_320 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_321 99.73 0.62 45 3361669 42.89 201070 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. 182 BertuzziAS_2018__ERS2032120__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_322 98.84 3.49 68 3635045 65.25 95627 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. BertuzziAS_2018__ERS2032125__bin.2 BertuzziAS_2018__ERS2032125__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium linens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_323 99.74 0 89 3595694 58.71 148826 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_323 MAG_323 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_324 88.01 0 125 1597059 36.36 18998 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_325 94.74 0 235 2269735 67 13294 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. CM_UNINA_FFOOD__FFOOD_408__bin.5 DuruIC_2018__ERS2061100__bin.2 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_375 100 0 48 1684672 39.28 51437 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_376 76.02 7.91 433 1842458 41.44 5117 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MAG_376 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_377 56.78 9.48 240 1964543 71.29 9460 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_377 MAG_377 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_378 62.81 4.95 249 1722793 36.46 12077 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MAG_378 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_379 74.14 1.72 632 2112813 46.31 3614 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746951__bin.4 MAG_379 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_380 99.25 0.94 210 2414161 35.41 24285 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_381 62.64 3.45 835 3133272 34.91 4300 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_501 MAG_381 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_382 60.06 1.72 166 1831951 35.44 16563 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MAG_382 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_383 96.78 0.55 108 3168411 43.07 55966 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. 182 MAG_383 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_384 80.68 5.34 744 3165031 41.64 5096 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. 182 MAG_384 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_385 96.99 0.55 98 1572591 53.3 23513 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746839__bin.4 MAG_385 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_386 100 0.28 24 2472468 34.86 220339 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_387 98.66 3.09 91 2963032 44.04 51818 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FranciosaI_2021__SRR12227952__bin.4 WalshAM_2020__ERS3466758__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraplantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_388 90.1 1.9 300 1765046 39.83 8367 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. DeFilippisF_xxxx__DF_7__bin.8 DeFilippisF_xxxx__DF_7__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus wasatchensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_389 73.71 8.29 226 1829245 35.39 12373 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_501 MAG_389 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_390 85.65 3.05 563 2264670 46.83 5079 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746951__bin.4 MAG_390 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_391 57.47 0 202 1778792 34.55 14225 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_501 MAG_391 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_392 99.6 0.15 74 1736661 38.88 38008 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. Wy2_bin.circ.1 MAG_392 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_393 68.1 5.17 195 1163181 35.49 7712 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_501 MAG_393 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_394 51.72 6.03 96 1588710 55.04 25109 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. We6_bin.full.31 MAG_394 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_395 100 0 31 2218530 34.97 88070 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_501 MAG_395 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_396 67.82 1.72 248 2238838 34.59 15529 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_397 53.33 1.4 474 1477850 35.47 3353 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MAG_397 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_398 53.17 1.78 98 1619570 56.01 31164 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_399 62.17 3.74 469 1569210 35.21 3684 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MAG_399 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_400 91.12 3.27 543 2610346 35.38 6266 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshAM_2020__ERS3466765__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_401 79.92 2.18 404 1639779 36.78 4668 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746979__bin.3 MAG_401 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_402 51.39 9.76 647 1680251 37.91 2606 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_009913915.1_ASM991391v1_genomic MAG_402 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_403 98.96 1.51 228 2436968 35.56 21746 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_404 68.14 6.32 648 2187362 43.98 3679 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. WalshAM_2020__ERS3466737__bin.1 MAG_404 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter piscatorii B cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_405 96.76 1.58 193 2304778 34.98 20652 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. DeFilippisF_xxxx__DF_100__bin.17 MAG_405 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Marinilactibacillus Marinilactibacillus psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_406 100 0.51 48 3040090 46.62 182532 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_406 MAG_406 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Idiomarina NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_407 66.17 4.18 1024 3300652 39.45 3548 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_90 MAG_407 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas sp030408135 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_408 60.4 9.48 547 3524814 41.84 10663 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. We2_bin.full.36 MAG_408 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas prydzensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_409 51.02 7.76 176 2003062 46.33 15383 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_409 MAG_409 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_410 51.72 6.9 110 1474576 55.13 22352 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. We6_bin.full.31 MAG_410 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_411 93.92 1.45 217 2207093 34.78 20197 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_501 MAG_411 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_412 63.71 9.05 259 1619827 40.16 19013 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_427 MAG_412 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Sporosarcina NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_413 71.55 0 286 1575742 35.67 6396 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MAG_413 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_414 95.15 0.65 172 2304194 43.95 19357 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_415 57.2 0.75 519 1534610 42.69 3110 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. 181 181 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_416 61.19 6.92 144 778170 43.47 7756 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MacoriG_2019__CS_R42__bin.6 MAG_416 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio toranzoniae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_417 58.71 0 41 876501 38.17 43562 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_009913915.1_ASM991391v1_genomic MAG_417 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_418 63.28 8.62 122 1931129 40.77 29846 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MacoriG_2019__CS_R33__bin.1 MAG_418 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio hibernica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_419 94.03 0.44 130 1882646 39.45 22487 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_420 63.79 0 528 1871675 35.25 3909 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshAM_2020__ERS3466787__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_421 99.38 2.78 91 2869722 44.8 49436 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_422 77.78 1.36 369 1475554 41.75 4603 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MAG_422 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_423 91.94 1.13 267 1690227 39.47 8614 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. WalshL_xxxx__V9__bin.2 MAG_423 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_424 81.03 5.17 180 2206374 35.46 17209 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MAG_424 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_425 93.78 1.11 143 2164009 46.35 23085 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_426 99.6 0.34 66 5054908 51.78 200916 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_426 MAG_426 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Citrobacter Citrobacter freundii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_427 94.83 8.31 298 2640793 39.29 13693 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_427 MAG_427 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Sporosarcina NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_428 91.53 1.12 439 1970518 35.57 5550 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MAG_428 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_429 50.21 2.53 739 1814131 43.89 2376 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. 182 MAG_429 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_430 98.21 0.62 134 2786984 47.49 33469 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_CSIC_2__P2584__bin.5 MAG_430 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter celer cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_431 99.13 0.58 135 4508074 64.2 48794 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. WalshAM_2020__ERS3466771__bin.3 WalshAM_2020__ERS3466771__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745485 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_432 98.84 1.94 128 4233264 62.24 57395 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_619 WalshAM_2020__ERS3466771__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp900169365 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_433 50.03 8.69 414 1795106 41.26 5439 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MAG_433 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_434 99.14 0.86 63 3570490 54.23 88406 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FalardeauJ_2023__SRR20811293__bin.2 WalshAM_2020__ERS3466789__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella citrativorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_435 99.86 1.29 71 4233793 53.03 99129 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_TEAGASC_1__TGS04-29__bin.9 MAG_435 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella sp030440445 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_436 96.53 0 54 3379317 59.62 112106 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_323 MAG_436 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_437 93.76 0.23 154 3289435 40.52 35781 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MacoriG_2019__CS_R33__bin.1 MacoriG_2019__CS_R33__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio hibernica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_438 100 0.51 171 3904018 39.89 43516 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FalardeauJ_2023__SRR20811282__bin.3 FalardeauJ_2023__SRR20811282__bin.3 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_439 89.79 5.99 696 5389698 55.25 12582 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. We6_bin.full.92 MAG_439 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Serratia Serratia proteamaculans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_440 97.27 0.79 196 4290616 55.14 43500 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_440 MAG_440 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Advenella Advenella sp003533245 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_441 88.44 1.34 162 4785368 55.9 48280 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_TEAGASC_1__TGS08-29__bin.64 WalshAM_2020__ERS3466774__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Serratia Serratia liquefaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_442 70.63 0.19 121 2842029 54.08 37947 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LeechJ_xxxx__AF84__bin.30 MAG_442 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Lelliottia Lelliottia amnigena cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_443 55.81 9.22 716 3768938 50.69 8742 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LeechJ_xxxx__AF84__bin.30 MAG_443 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Lelliottia Lelliottia amnigena cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_444 50.86 4.31 416 3068876 33.99 8428 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. DeFilippisF_xxxx__DF_100__bin.17 MAG_444 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Marinilactibacillus Marinilactibacillus psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_445 96.96 1.66 102 4576661 44.05 70014 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MacoriG_2019__CS_R42__bin.6 MacoriG_2019__CS_R42__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio toranzoniae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_446 100 4.96 112 4751863 42.57 65037 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_72 MAG_446 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Marinomonadaceae;Marinomonas Marinomonas sp012726345 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_447 80.08 7.49 1014 4020987 41.97 4597 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. WalshAM_2020__ERS3466749__bin.4 MAG_447 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio litoralis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_448 80.12 3.49 1141 3832187 67.7 3814 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MAG_448 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_449 98.26 0.58 269 3719265 63.29 28220 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_450 88.22 8.47 817 3956875 66.2 6655 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_FFoQSI_1__VB-05-BG__bin.13 MAG_450 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_451 54.8 1.72 317 3237797 39.81 15013 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_452 MAG_451 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_452 56.9 1.72 249 3756941 39.66 24933 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_452 MAG_452 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_453 80.74 4.46 826 2919421 59.41 3944 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_323 MAG_453 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_454 96.23 1.25 75 3820370 40.42 98512 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0160-001_Vibrio_casei_JB196 MAG_454 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_455 96.44 1.63 270 3423699 40.09 18475 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FalardeauJ_2023__SRR20811282__bin.3 MAG_455 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_456 90.03 6.9 474 3254218 43.3 10857 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. 182 MAG_456 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_457 96.51 0 136 3613854 63.22 52441 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. We6_bin.circ.9 MAG_457 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_458 59.31 9.48 380 3219773 70.6 9218 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. WolfeBE_2014__491_Bayley__bin.8 MAG_458 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_459 67.3 9.45 447 3114573 66.38 12518 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MAG_459 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_460 96.2 0 82 2443637 46.61 54549 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_461 54.26 7.13 991 2885203 70.26 2962 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_461 MAG_461 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_462 96.71 0 236 3974541 63.05 33007 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. We6_bin.circ.9 MAG_462 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_463 90.47 5.51 753 3312254 33.23 5282 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. YangC_2021__SRR13259378__bin.4 MAG_463 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_464 66.23 2.6 1092 3025328 62.74 2816 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. We6_bin.circ.9 MAG_464 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_465 51.72 5.17 448 2995058 52.4 11669 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_465 MAG_465 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_466 94.6 0.65 90 1655752 50.64 24051 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_006740305.1_ASM674030v1_genomic MAG_466 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_467 92.8 1.06 375 1863711 68.89 6536 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. DeFilippisF_xxxx__DF_58__bin.5 QuigleyL_2016__ERR752914__bin.5 Deinococcota;Deinococci;Deinococcales;Thermaceae;Thermus Thermus parvatiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_468 85.93 0.85 420 1829661 68.31 5486 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. DeFilippisF_xxxx__DF_58__bin.5 MAG_468 Deinococcota;Deinococci;Deinococcales;Thermaceae;Thermus Thermus parvatiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_469 98.79 0 48 2495530 67.39 76365 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_553 94.43 3.2 185 1895093 39.96 16097 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_001885995.1_ASM188599v1_genomic EscobarZepedaA_2016__SRS974112__bin.14 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_G Enterococcus G italicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_554 93.35 1.87 191 2188059 38.44 17944 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_TEAGASC_1__TGS12-29__bin.6 MASTER_WP4_UNINA_1__FO013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B faecium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_555 82.89 2.59 472 2133749 71.82 5522 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. CM_UNINA_FFOOD__FFOOD_286__bin.4 MAG_555 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia kristinae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_556 100 1.32 379 3206830 69.02 11820 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. C-R09.bin.5 C-R09.bin.5 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Acidipropionibacterium Acidipropionibacterium acidipropionici cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_557 85.81 2.47 141 1658001 39.79 19440 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. YuY_2022__SRR16950700__bin.19 EscobarZepedaA_2016__SRS974112__bin.10 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Aerococcus Aerococcus urinaeequi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_558 96.66 1.69 211 2820496 37.62 23690 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_CSIC_1__P2235_73323__bin.9 MAG_558 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_559 93.23 0.36 158 2019068 46.4 18287 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MotaGutierrezJ_2021__SRR11602150__bin.9 DeFilippisF_xxxx__DS_50__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_560 92.15 2.01 182 1612467 39.01 12525 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_900116935.1_Chromosome_genomic GCF_900116935.1_Chromosome_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus Ligilactobacillus acidipiscis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_561 86.6 0 123 1373701 38.55 16467 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. C-R03.bin.7 EscobarZepedaA_2016__SRS974112__bin.21 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Bavariicoccus Bavariicoccus seileri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_562 82.54 0.19 355 2666309 65.44 9032 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. BertuzziAS_2018__ERS2032125__bin.2 EscobarZepedaA_2016__SRS974112__bin.31 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium linens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_563 87.92 1.02 183 1949766 58.02 13634 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. CM_UNINA_FFOOD__FFOOD_290__bin.1 EscobarZepedaA_2016__SRS974112__bin.34 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia crudilactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_564 81.81 1.08 270 1744343 59.36 7141 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 EscobarZepedaA_2016__SRS974112__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_565 74.43 5.71 238 1724560 44.59 10127 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FalardeauJ_2023__SRR20811279__bin.3 AlvarezOrdonezA_xxxx__Q06-27__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_566 72.55 6.03 470 3068487 43.61 11870 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FranciosaI_2021__SRR12227952__bin.4 EscobarZepedaA_2016__SRS974112__bin.18 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraplantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_618 98.27 1.18 252 4418055 55.31 24792 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746854__bin.2 FontanaF_2023__SRR20746854__bin.2 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter Enterobacter intestinihominis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_619 98.55 0.58 146 3941753 62.29 47079 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_619 MAG_619 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp900169365 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_620 99.42 1.26 130 3286708 42.75 39600 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. 182 WolfeBE_2014__319_Tarentaise__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_621 96.8 0.58 245 3517843 63.22 23490 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. We6_bin.circ.9 WolfeBE_2014__319_Tarentaise__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_622 97.58 0.51 239 2939255 43.05 15525 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FalardeauJ_2023__SRR20811274__bin.6 KastmanEK_2016__CSB694__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861365 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_623 87.03 4.99 315 2539542 43.79 9880 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. Wy5_bin.lin.34 MAG_623 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_624 94.64 2.91 242 2328928 34.96 13371 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. DeFilippisF_xxxx__DF_100__bin.17 WolfeBE_2014__337_Mileens__bin.8 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Marinilactibacillus Marinilactibacillus psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_625 98.31 0.45 87 2910598 67.05 59024 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_626 92.7 0.55 255 2842680 42.1 15135 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. 181 MAG_626 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_627 93.51 0.94 140 2155551 35.65 24054 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_628 97.09 0.29 234 4032739 62.53 26740 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. WolfeBE_2014__575_CabotClothbound__bin.6 WolfeBE_2014__575_CabotClothbound__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_629 96.59 1.38 167 3220377 68.67 32928 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_629 MAG_629 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Xanthomonadaceae;Luteimonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_630 98.58 0 53 3925938 56.07 133105 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_630 MAG_630 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Alcaligenes Alcaligenes aquatilis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_631 89.2 1.79 383 3121237 63.3 11387 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. We6_bin.circ.9 KastmanEK_2016__CSB907__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_632 93.17 0.88 208 3419742 39.78 23415 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_632 MAG_632 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_633 82.66 1.53 231 2606786 66.98 15889 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_CSIC_2__P2558__bin.5 MASTER_WP4_CSIC_2__P2558__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Arthrobacter_H Arthrobacter H sp030452125 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_634 99.92 0.67 37 2489731 65.62 145022 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_635 93.9 1.16 253 3720003 63.28 19735 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. We6_bin.circ.9 WolfeBE_2014__771_Tarentaise__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_636 87.72 2.83 569 3930033 70.19 8588 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. WolfeBE_2014__771_Tarentaise__bin.3 WolfeBE_2014__771_Tarentaise__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium tyrofermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_637 80.32 4.36 426 3233014 63.32 8995 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. We6_bin.circ.9 WolfeBE_2014__894_Twig_Tomme__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_638 95.71 3.04 441 3659035 70.32 11075 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_639 93.68 0.54 158 3177698 55.24 39708 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_640 86.23 1.16 454 3105359 63.28 8035 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. We6_bin.circ.9 MAG_640 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_641 98.06 0.51 79 2729594 68.69 54598 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. 160 WolfeBE_2014__950_Rush_Creek__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_642 99.14 0.86 109 3718018 54.19 49657 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FalardeauJ_2023__SRR20811293__bin.2 MAG_642 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella citrativorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_643 97.47 1.04 247 3054082 42.08 18423 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. 181 MAG_643 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_644 90.15 1.65 270 3762890 63.65 19304 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. DeFilippisF_xxxx__DS_90__bin.4 KastmanEK_2016__CSB734__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sandarakinum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_645 94.19 0 219 3342608 63.26 21076 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. We6_bin.circ.9 KastmanEK_2016__CSB870__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_646 85.25 0.64 378 3185369 63.38 10649 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. We6_bin.circ.9 KastmanEK_2016__CSB387__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_647 82.3 1.44 198 2290452 55.85 17289 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 KastmanEK_2016__CSB694__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_648 92.27 0.58 317 3278537 63.25 13751 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. We6_bin.circ.9 MAG_648 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_649 98.54 0.58 110 3874981 70.38 58834 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_650 80.5 1.08 277 2122953 55.8 9127 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. CM_UNINA_FFOOD__FFOOD_227__bin.5 KastmanEK_2016__CSB729__bin.7 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_651 99.23 0.53 102 3107352 69.11 52308 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_2__P2570__bin.32 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_652 91.23 1.75 370 3805871 70.37 14247 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. WolfeBE_2014__771_Tarentaise__bin.3 MAG_652 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium tyrofermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MAG_653 95.28 4.17 272 2640116 33.03 12454 ['SAMEA3232870', 'SAMEA3232871', 'SAMEA3232872', 'SAMEA3232873', 'SAMEA3232874', 'SAMEA3232875', 'SAMEA3232876', 'SAMEA3232877', 'SAMEA3232878', 'SAMEA3232879', 'SAMEA104414147', 'SAMEA104414148', 'SAMEA104414149', 'SAMEA104414150', 'SAMEA104414151', 'SAMEA104414152', 'SAMEA104414153', 'SAMEA104414154', 'SAMEA104414155', 'SAMEA104414156', 'SAMEA104414157', 'SAMEA104414158', 'SAMEA104414159', 'SAMEA104414160', 'SAMEA104414161', 'SAMEA104414162', 'SAMEA104414163', 'SAMEA104414164', 'SAMEA104414165', 'SAMEA104414166', 'SAMEA104414167', 'SAMEA104414168', 'SAMEA104414169', 'SAMEA104414170', 'SAMEA104414171', 'SAMEA104414172', 'SAMEA104414173', 'SAMEA104414174', 'SAMEA104414175', 'SAMEA104414176', 'SAMEA104414178', 'SAMEA104414179', 'SAMEA104414180', 'SAMEA104414181', 'SAMEA104414182', 'SAMEA5662701', 'SAMEA5662702', 'SAMEA5662703', 'SAMEA5662704', 'SAMEA5662735', 'SAMEA5662705', 'SAMEA5662736', 'SAMEA5662706', 'SAMEA5662707', 'SAMEA5662708', 'SAMEA5662709', 'SAMEA5662710', 'SAMEA5662737', 'SAMEA5662738', 'SAMEA5662739', 'SAMEA5662740', 'SAMEA5662741', 'SAMEA5662742', 'SAMEA5662743', 'SAMEA5662711', 'SAMEA5662744', 'SAMEA5662745', 'SAMEA5662746', 'SAMEA5662712', 'SAMEA5662713', 'SAMEA5662747', 'SAMEA5662748', 'SAMEA5662714', 'SAMEA5662715', 'SAMEA5662716', 'SAMEA5662717', 'SAMEA5662718', 'SAMEA5662719', 'SAMEA5662749', 'SAMEA5662720', 'SAMEA5662750', 'SAMEA5662721', 'SAMEA5662751', 'SAMEA5662752', 'SAMEA5662753', 'SAMEA5662761', 'SAMEA5662762', 'SAMEA5662763', 'SAMEA5662764', 'SAMEA5662722', 'SAMEA5662765', 'SAMEA5662766', 'SAMEA5662767', 'SAMEA5662768', 'SAMEA5662769', 'SAMEA5662770', 'SAMEA5662723', 'SAMEA5662724', 'SAMEA5662725', 'SAMEA5662726', 'SAMEA5662771', 'SAMEA5662727', 'SAMEA5662728', 'SAMEA5662729', 'SAMEA5662754', 'SAMEA5662730', 'SAMEA5662755', 'SAMEA5662756', 'SAMEA5662731', 'SAMEA5662757', 'SAMEA5662758', 'SAMEA5662732', 'SAMEA5662759', 'SAMEA5662760', 'SAMEA5662772', 'SAMEA5662773', 'SAMEA5662774', 'SAMEA5662775', 'SAMEA5662776', 'SAMEA5662777', 'SAMEA5662733', 'SAMEA5662734', 'SAMEA6503740', 'SAMEA6503741', 'SAMEA6503742', 'SAMEA6503743', 'SAMEA6503744', 'SAMEA6503745', 'SAMEA6503746', 'SAMEA6503747', 'SAMEA6503748', 'SAMEA6503749', 'SAMEA6503750', 'SAMEA6503751', 'SAMEA6503752', 'SAMEA6503783', 'SAMEA6503785', 'SAMEA6503786', 'SAMEA6503787', 'SAMEA6503788', 'SAMEA6503789', 'SAMEA6503790', 'SAMEA6503791', 'SAMEA6503792', 'SAMEA6503793', 'SAMEA6503794', 'SAMEA6503795', 'SAMEA6503796', 'SAMEA6503797', 'SAMEA6503798', 'SAMEA6503799', 'SAMEA6503800', 'SAMN03771674', 'SAMEA104414183', 'SAMEA104414184', 'SAMEA104414185', 'SAMEA104414186', 'SAMEA104414187', 'SAMEA104414188'] ['ERR752910', 'ERR752911', 'ERR752912', 'ERR752913', 'ERR752914', 'ERR752915', 'ERR752916', 'ERR752917', 'ERR752918', 'ERR752919', 'ERR2212267', 'ERR2212268', 'ERR2212269', 'ERR2212270', 'ERR2212271', 'ERR2212272', 'ERR2212273', 'ERR2212274', 'ERR2212275', 'ERR2212276', 'ERR2212277', 'ERR2212278', 'ERR2212279', 'ERR2212280', 'ERR2212281', 'ERR2212282', 'ERR2212283', 'ERR2212284', 'ERR2212285', 'ERR2212286', 'ERR2212287', 'ERR2212288', 'ERR2212289', 'ERR2212290', 'ERR2212291', 'ERR2212292', 'ERR2212293', 'ERR2212294', 'ERR2212296', 'ERR2212297', 'ERR2212298', 'ERR2212299', 'ERR2212300', 'ERR2212301', 'ERR2212302', 'ERR3340746', 'ERR3340747', 'ERR3340748', 'ERR3340749', 'ERR3340750', 'ERR3340751', 'ERR3340752', 'ERR3340753', 'ERR3340754', 'ERR3340755', 'ERR3340756', 'ERR3340757', 'ERR3340758', 'ERR3340759', 'ERR3340760', 'ERR3340761', 'ERR3340762', 'ERR3340763', 'ERR3340764', 'ERR3340765', 'ERR3340766', 'ERR3340767', 'ERR3340768', 'ERR3340769', 'ERR3340770', 'ERR3340771', 'ERR3340772', 'ERR3340773', 'ERR3340774', 'ERR3340775', 'ERR3340776', 'ERR3340777', 'ERR3340778', 'ERR3340779', 'ERR3340780', 'ERR3340781', 'ERR3340782', 'ERR3340783', 'ERR3340784', 'ERR3340785', 'ERR3340786', 'ERR3340787', 'ERR3340788', 'ERR3340789', 'ERR3340790', 'ERR3340791', 'ERR3340792', 'ERR3340793', 'ERR3340794', 'ERR3340795', 'ERR3340796', 'ERR3340797', 'ERR3340798', 'ERR3340799', 'ERR3340800', 'ERR3340801', 'ERR3340802', 'ERR3340803', 'ERR3340804', 'ERR3340805', 'ERR3340806', 'ERR3340807', 'ERR3340808', 'ERR3340809', 'ERR3340810', 'ERR3340811', 'ERR3340812', 'ERR3340813', 'ERR3340814', 'ERR3340815', 'ERR3340816', 'ERR3340817', 'ERR3340818', 'ERR3340819', 'ERR3340820', 'ERR3340821', 'ERR3340822', 'ERR3850050', 'ERR3850051', 'ERR3850052', 'ERR3850053', 'ERR3850054', 'ERR3850055', 'ERR3850056', 'ERR3850057', 'ERR3850058', 'ERR3850059', 'ERR3850060', 'ERR3850061', 'ERR3850062', 'ERR3850093', 'ERR3850095', 'ERR3850096', 'ERR3850097', 'ERR3850098', 'ERR3850099', 'ERR3850100', 'ERR3850101', 'ERR3850102', 'ERR3850103', 'ERR3850104', 'ERR3850105', 'ERR3850106', 'ERR3850107', 'ERR3850108', 'ERR3850109', 'ERR3850110', 'SRR2081070', 'ERR2212303', 'ERR2212304', 'ERR2212305', 'ERR2212306', 'ERR2212307', 'ERR2212308'] ['Ireland', 'Mexico'] ['PRJEB6952', 'PRJEB15423', 'PRJEB32768', 'PRJEB35062', 'PRJNA286900'] ['ERP006630', 'ERP017154', 'ERP115482', 'ERP118054', 'SRP059999'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. YangC_2021__SRR13259377__bin.4 KastmanEK_2016__CSB600__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months 156 100 0 1 4211827 62.63 4211827 SAMN28230094 SRR19236869; SRR19236870 USA PRJNA837750 SRP375506 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. We6_bin.circ.9 156 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months 158 100 0.86 3 4101600 54.36 4097650 SAMN28230173 SRR19240247; SRR19240248 USA PRJNA837754 SRP375591 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. FalardeauJ_2023__SRR20811293__bin.2 158 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella citrativorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months 160 99.33 0.51 3 3081695 68.12 2974664 SAMN28230657 SRR19237397; SRR19237398 USA PRJNA837770 SRP375516 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. 160 160 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months 164 99.73 1.57 8 3451757 42.97 3043834 SAMN28230850 SRR19236804; SRR19236805 USA PRJNA837776 SRP375501 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. O4_bin.circ.1 O4_bin.circ.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter alimentarius cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months 166 99.74 0.54 8 3939764 59.13 2729435 SAMN28230914 SRR19237463; SRR19237464 USA PRJNA837782 SRP375518 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. MAG_323 O6_bin.circ.2 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months 169 100 1.17 6 3636376 42.77 2322722 SAMN28230942 SRR19240301; SRR19240302 USA PRJNA837789 SRP375596 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. 182 O2_bin.circ.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months 174 100 0 4 4358493 62.8 4308994 SAMN28404911 SRR19236863; SRR19236864 USA PRJNA838091 SRP375504 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. We6_bin.circ.9 We6_bin.circ.9 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months 175 99.73 0.88 15 3391335 43.26 463689 SAMN28404912 SRR19240303 USA PRJNA838092 SRP375597 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. 175 175 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp900163785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months 176 100 0.34 8 4051252 40.15 1395733 SAMN28404913 SRR19236885; SRR19236886 USA PRJNA838093 SRP375509 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. FalardeauJ_2023__SRR20811282__bin.3 176 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months 177 99.44 1.94 22 2824970 32.67 562720 SAMN28404914 SRR19236865 USA PRJNA838094 SRP375505 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months 178 98.9 1.1 13 2549802 34.5 618560 SAMN28404915 SRR19236806 USA PRJNA838095 SRP375502 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. 178 178 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus carnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months 179 100 0.6 10 3462902 42.79 3365148 SAMN28404981 SRR19236887; SRR19236888 USA PRJNA838105 SRP375510 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. 182 O6_bin.full.65 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months 180 99.73 0.55 6 3152619 44.73 3075451 SAMN28404982 SRR19240245; SRR19240246 USA PRJNA838104 SRP375590 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. 180 180 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter namhaensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months 181 99.53 0.62 12 3716557 41.96 2153466 SAMN28404983 SRR19240306; SRR19240307 USA PRJNA838102 SRP375599 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. 181 181 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months 182 100 0.55 14 3581957 42.64 1843461 SAMN28404984 SRR19236881; SRR19236882 USA PRJNA838100 SRP375508 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. 182 182 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months 183 99.42 0.88 4 4565761 69.4 3149085 SAMN28404985 SRR19240304; SRR19240305 USA PRJNA838106 SRP375598 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. 183 183 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months O2_bin.circ.2 100 1.17 1 3553856 42.77 3553856 SAMN23169399 SRR18495451 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. 182 O2_bin.circ.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months O2_bin.circ.8 93.24 0.34 1 3295412 40.31 3295412 SAMN23169399 SRR18495451 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. FalardeauJ_2023__SRR20811282__bin.3 176 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months O2_bin.full.47 76.3 2.2 3 2744741 40.23 2650047 SAMN23169399 SRR17227802 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. FalardeauJ_2023__SRR20811282__bin.3 We2_bin.full.53 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months O4_bin.circ.1 99.73 1.57 1 3364754 43.02 3364754 SAMN23169401 SRR18495444 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. O4_bin.circ.1 O4_bin.circ.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter alimentarius cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months O6_bin.circ.2 99.74 0.54 1 3817479 59.16 3817479 SAMN23169403 SRR18495442 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. MAG_323 O6_bin.circ.2 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months O6_bin.circ.4 100 0 1 4234611 62.76 4234611 SAMN23169403 SRR18495442 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. We6_bin.circ.9 O6_bin.circ.4 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months O6_bin.full.65 100 0.6 6 3498833 42.87 3407986 SAMN23169403 SRR17227790 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. 182 O6_bin.full.65 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months We2_bin.circ.10 99.89 0.58 1 1840268 38.99 1840268 SAMN23169435 SRR18495449 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months We2_bin.circ.8 85.86 0.09 1 2646413 41.7 2646413 SAMN23169435 SRR18495449 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. We2_bin.circ.8 We2_bin.circ.8 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months We2_bin.full.21 100 0.42 2 3891148 40.1 3235357 SAMN23169435 SRR17227798 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. FalardeauJ_2023__SRR20811282__bin.3 We2_bin.full.21 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months We2_bin.full.36 100 0.91 2 5097667 41.11 3929073 SAMN23169435 SRR17227798 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. We2_bin.full.36 We2_bin.full.36 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas prydzensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months We2_bin.full.40 98.65 0 1 2592550 36.33 2592550 SAMN23169435 SRR17227798 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. GCF_001703515.1_ASM170351v1_genomic We2_bin.full.40 Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months We2_bin.full.44 96.08 1.45 2 3884512 41.84 2702996 SAMN23169435 SRR17227798 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. We2_bin.full.44 We2_bin.full.44 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months We2_bin.full.46 96.28 1.11 2 3777657 40.5 2647748 SAMN23169435 SRR17227798 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. ODFM-BA-A-0160-001_Vibrio_casei_JB196 Wy3_bin.full.20 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months We2_bin.full.47 100 1.29 3 3921946 54.27 2258426 SAMN23169435 SRR17227798 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. FalardeauJ_2023__SRR20811293__bin.2 FalardeauJ_2023__SRR20811293__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella citrativorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months We2_bin.full.53 90.93 0.34 4 3413832 40.16 2280179 SAMN23169435 SRR17227798 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. FalardeauJ_2023__SRR20811282__bin.3 We2_bin.full.53 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months We2_bin.full.62 98.8 1 1 2857548 37.94 2857548 SAMN23169435 SRR17227798 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. We2_bin.full.62 We2_bin.full.62 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Desemzia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months We4_bin.circ.1 99.53 0.67 1 3777206 41.97 3777206 SAMN23169437 SRR18495447 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. 181 181 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months We4_bin.full.28 99.11 0.57 3 3356523 36.17 1513623 SAMN23169437 SRR17227796 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. We4_bin.full.28 We4_bin.full.28 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;Mesonia Mesonia profundi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months We5_bin.circ.3 100 0 1 4367604 55.76 4367604 SAMN23169438 SRR18495446 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. We5_bin.circ.3 We5_bin.circ.3 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Alcaligenes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months We5_bin.circ.8 98.54 0 1 3553795 65.41 3553795 SAMN23169438 SRR18495446 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. We5_bin.circ.8 We5_bin.circ.8 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter Leucobacter sp001482305 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months We6_bin.circ.4 100 0 1 4047242 55.34 4047242 SAMN23169439 SRR18495445 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. We6_bin.circ.4 We6_bin.circ.4 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Alcaligenes Alcaligenes pakistanensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months We6_bin.circ.8 99.27 1.75 1 3942972 67.23 3942972 SAMN23169439 SRR18495445 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. We6_bin.circ.8 We6_bin.circ.8 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months We6_bin.circ.9 100 0 1 4376824 62.86 4376824 SAMN23169439 SRR18495445 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. We6_bin.circ.9 We6_bin.circ.9 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months We6_bin.full.13 100 0.47 1 3884337 55.52 3884337 SAMN23169439 SRR17227794 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. We6_bin.full.13 We6_bin.full.13 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Alcaligenes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months We6_bin.full.31 100 0.43 1 3863101 53.76 3863101 SAMN23169439 SRR17227794 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. We6_bin.full.31 We6_bin.full.31 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months We6_bin.full.92 99.65 1.19 2 5439535 54.92 4315560 SAMN23169439 SRR17227794 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. We6_bin.full.92 We6_bin.full.92 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Serratia Serratia proteamaculans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months Wy2_bin.circ.1 99.89 0.15 1 1840268 38.99 1840268 SAMN23169417 SRR18495441 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months Wy2_bin.circ.3 100 0.34 1 4981066 48.66 4981066 SAMN23169417 SRR18495441 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. Wy2_bin.circ.3 Wy2_bin.circ.3 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia alvei B cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months Wy2_bin.circ.5 99.95 0.97 1 3292036 42.55 3292036 SAMN23169417 SRR18495441 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. Wy2_bin.circ.5 Wy2_bin.circ.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months Wy2_bin.full.11 100 0.42 2 3880330 40.1 3225626 SAMN23169417 SRR17227788 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. FalardeauJ_2023__SRR20811282__bin.3 We2_bin.full.21 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months Wy3_bin.full.16 94.26 3.53 8 3722285 41.62 1209389 SAMN23169418 SRR17227787 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. We2_bin.circ.8 We2_bin.circ.8 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months Wy3_bin.full.20 96.28 1.11 2 3815845 40.52 2647745 SAMN23169418 SRR17227787 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. ODFM-BA-A-0160-001_Vibrio_casei_JB196 Wy3_bin.full.20 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months Wy4_bin.full.1 100 0.91 2 5096178 41.11 3927576 SAMN23169419 SRR17227786 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. We2_bin.full.36 We2_bin.full.36 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas prydzensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months Wy5_bin.lin.34 99.45 0.9 3 3201038 43.72 3166570 SAMN23169420 SRR17227801 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. Wy5_bin.lin.34 Wy5_bin.lin.34 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months Wy6_bin.lin.34 89.07 2.36 8 3203974 36.34 1749971 SAMN23169421 SRR17227800 USA PRJNA778418 SRP346349 NCBI Saak CC, Pierce EC, Dinh CB, Portik D, Hall R, Ashby M, Dutton RJ. Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities. mSystems. 2023 Feb 23;8(1):e0070122. doi: 10.1128/msystems.00701-22. We4_bin.full.28 We4_bin.full.28 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;Mesonia Mesonia profundi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-23__bin.8 77.24747475 2.083333333 475 1755333 36.05 4125 SAMN36690177 SRR25395182 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 AlvarezOrdonezA_xxxx__Q01-23__bin.8 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-23__bin.3 91.92082721 0.363901019 136 1435748 39.53 16124 SAMN36690177 SRR25395182 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 AlvarezOrdonezA_xxxx__Q01-23__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-23__bin.2 67.75477897 0 352 1581254 34.32 5699 SAMN36690177 SRR25395182 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 AlvarezOrdonezA_xxxx__Q01-23X__bin.6 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-23__bin.1 96.25326109 2.141280353 436 2553976 35.43 7971 SAMN36690177 SRR25395182 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 AlvarezOrdonezA_xxxx__Q01-23__bin.1 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-23__bin.5 67.46539313 0.19379845 727 2592342 62.9 4063 SAMN36690177 SRR25395182 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS01-22__bin.37 AlvarezOrdonezA_xxxx__Q01-23__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium antiquum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-23X__bin.8 94.66778241 0.921189436 167 1617589 39.07 16533 SAMN36690178 SRR25395181 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 AlvarezOrdonezA_xxxx__Q01-23__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-23X__bin.6 94.35185185 0.555555556 563 2654031 33.21 6078 SAMN36690178 SRR25395181 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 AlvarezOrdonezA_xxxx__Q01-23X__bin.6 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-23X__bin.5 93.9795304 3.112582781 404 2431962 35.39 7498 SAMN36690178 SRR25395181 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 AlvarezOrdonezA_xxxx__Q01-23__bin.1 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-23X__bin.2 63.77592755 0.153374233 300 1076131 39.77 3856 SAMN36690178 SRR25395181 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2137_73322__bin.20 MASTER_WP4_CSIC_1__P2137_73322__bin.20 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella thailandensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-23X__bin.4 63.56473768 1.400862069 425 1551940 61.21 3913 SAMN36690178 SRR25395181 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic AlvarezOrdonezA_xxxx__Q01-27__bin.7 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-24__bin.2 99.90566038 1.603773585 99 2548872 34.79 69909 SAMN36690179 SRR25395180 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-24__bin.3 66.37931034 0 265 1076883 39.54 4964 SAMN36690179 SRR25395180 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 AlvarezOrdonezA_xxxx__Q01-23__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-25__bin.7 92.84951826 0.669108325 176 1462434 39.46 11960 SAMN36690180 SRR25395179 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 AlvarezOrdonezA_xxxx__Q01-23__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-25__bin.6 63.41726404 0 427 1467602 34.76 3681 SAMN36690180 SRR25395179 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 AlvarezOrdonezA_xxxx__Q01-23X__bin.6 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-25__bin.2 94.55448525 4.08388521 444 2498737 35.61 7282 SAMN36690180 SRR25395179 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 AlvarezOrdonezA_xxxx__Q01-23__bin.1 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-25__bin.8 59.37055123 2.047413793 430 1440923 61.5 3607 SAMN36690180 SRR25395179 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic AlvarezOrdonezA_xxxx__Q01-27__bin.7 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-25__bin.3 58.49252492 1.744186047 718 2148185 62.95 3182 SAMN36690180 SRR25395179 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS01-22__bin.37 AlvarezOrdonezA_xxxx__Q01-25__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium antiquum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-26__bin.1 100 3.490566038 90 2619212 34.76 102090 SAMN36690181 SRR25395178 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-26__bin.2 70.77849384 0.491266376 257 1064651 39.56 4946 SAMN36690181 SRR25395178 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 AlvarezOrdonezA_xxxx__Q01-26__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-27__bin.3 96.06918239 1.918238994 224 2265819 34.9 22015 SAMN36690495 SRR25395341 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-27__bin.4 85.73504652 0.509461426 184 1359409 39.42 9839 SAMN36690495 SRR25395341 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 AlvarezOrdonezA_xxxx__Q01-23__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-27__bin.2 90.76911589 1.388888889 650 2702883 33.41 5289 SAMN36690495 SRR25395341 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 AlvarezOrdonezA_xxxx__Q01-23X__bin.6 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-27__bin.7 71.98613252 2.486366024 522 1977208 61.56 4176 SAMN36690495 SRR25395341 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic AlvarezOrdonezA_xxxx__Q01-27__bin.7 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-28__bin.3 99.52830189 0.943396226 95 2476503 34.93 66717 SAMN36690496 SRR25395340 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-28__bin.1 68.80122005 0.509461426 225 1043331 39.51 5428 SAMN36690496 SRR25395340 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 AlvarezOrdonezA_xxxx__Q01-23__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-29__bin.7 50.8787062 1.289308176 364 989937 36.3 2824 SAMN36690497 SRR25395339 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 AlvarezOrdonezA_xxxx__Q01-29__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-29__bin.3 96.00713939 1.236793915 191 1681413 39.02 13334 SAMN36690497 SRR25395339 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 AlvarezOrdonezA_xxxx__Q01-23__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-29__bin.4 97.75193798 0.19379845 151 4200629 63.07 52160 SAMN36690497 SRR25395339 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 AlvarezOrdonezA_xxxx__Q01-29__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-29__bin.9 89.42495127 1.559454191 739 3484896 70.31 5951 SAMN36690497 SRR25395339 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 AlvarezOrdonezA_xxxx__Q01-29__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-29__bin.1 63.15789474 1.754385965 352 1622553 36.65 6211 SAMN36690497 SRR25395339 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_012396435.1_ASM1239643v1_genomic AlvarezOrdonezA_xxxx__Q01-29__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella hellenica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-29__bin.17 68.6335008 1.689602446 582 2674951 59.75 5411 SAMN36690497 SRR25395339 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_323 AlvarezOrdonezA_xxxx__Q01-29__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-29__bin.10 89.04427159 4.9371896 166 1620772 36.69 14844 SAMN36690497 SRR25395339 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_010306265.1_ASM1030626v1_genomic MASTER_WP4_UNINA_1__SS007_71775__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella sagaensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-29__bin.13 82.11931361 2.569444444 941 4185027 65.44 5415 SAMN36690497 SRR25395339 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q01-30__bin.12 AlvarezOrdonezA_xxxx__Q01-30__bin.12 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Xanthomonadaceae;Xanthomonas Xanthomonas campestris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-29__bin.6 93.28765227 0.775193798 277 3800729 62.37 22276 SAMN36690497 SRR25395339 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q01-29__bin.6 AlvarezOrdonezA_xxxx__Q01-29__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-29__bin.15 81.7 0.2 3976 25464836 48.81 7993 SAMN36690497 SRR25395339 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2560__bin.1 AlvarezOrdonezA_xxxx__Q08-29__bin.9 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium sp SPG F1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-30__bin.16 98.64130435 1.358695652 177 1748139 42.34 14086 SAMN36690498 SRR25395338 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-30__bin.1 92.94748646 3.07496361 241 1611296 39.17 9570 SAMN36690498 SRR25395338 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 AlvarezOrdonezA_xxxx__Q01-23__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-30__bin.7 79.90797546 1.073619632 327 1607675 39.2 6031 SAMN36690498 SRR25395338 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2137_73322__bin.20 MASTER_WP4_CSIC_1__P2137_73322__bin.20 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella thailandensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-30__bin.4 71.05263158 1.754385965 268 1731383 36.84 9372 SAMN36690498 SRR25395338 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_012396435.1_ASM1239643v1_genomic AlvarezOrdonezA_xxxx__Q01-30__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella hellenica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-30__bin.11 95.46868297 2.627627628 451 3057905 69.14 9115 SAMN36690498 SRR25395338 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 AlvarezOrdonezA_xxxx__Q01-30__bin.11 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-30__bin.6 94.11733162 2.485521236 460 2842536 67.78 8053 SAMN36690498 SRR25395338 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 AlvarezOrdonezA_xxxx__Q01-30__bin.6 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-30__bin.9 88.09896179 0.613496933 144 1619453 36.55 17455 SAMN36690498 SRR25395338 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_010306265.1_ASM1030626v1_genomic MASTER_WP4_UNINA_1__SS007_71775__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella sagaensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-30__bin.12 91.89034823 0.724637681 682 4601511 65.39 9017 SAMN36690498 SRR25395338 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q01-30__bin.12 AlvarezOrdonezA_xxxx__Q01-30__bin.12 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Xanthomonadaceae;Xanthomonas Xanthomonas campestris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-30__bin.5 82.8 0.1 3987 25510268 48.84 7952 SAMN36690498 SRR25395338 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2560__bin.1 AlvarezOrdonezA_xxxx__Q08-29__bin.9 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium sp SPG F1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-23__bin.2 59.30277979 0.272573562 473 2396967 50.72 5518 SAMN36690182 SRR25395177 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811283__bin.7 FalardeauJ_2023__SRR20811283__bin.7 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia alvei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-23__bin.3 67.24137931 1.724137931 172 1967571 34.76 18676 SAMN36690182 SRR25395177 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-23__bin.14 86.70949861 1.940035273 267 1357155 38.65 6169 SAMN36690182 SRR25395177 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic AlvarezOrdonezA_xxxx__Q02-23__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-23__bin.25 69.87179616 0.58224163 210 1086141 40.37 5991 SAMN36690182 SRR25395177 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-23__bin.15 98.11320755 1.194968553 67 2091322 40.22 49705 SAMN36690182 SRR25395177 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 FontanaF_2023__SRR20746866__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-23__bin.9 88.18745834 2.401095802 495 2405356 70.8 5977 SAMN36690182 SRR25395177 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q02-23__bin.9 AlvarezOrdonezA_xxxx__Q02-23__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium lacticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-23__bin.7 75.5828373 0.392691799 44 3562282 56.05 109660 SAMN36690182 SRR25395177 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q02-30__bin.22 AlvarezOrdonezA_xxxx__Q02-30__bin.22 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella ornithinolytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-24__bin.1 59.09090909 0 147 1851088 34.57 26688 SAMN36690183 SRR25395175 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-24__bin.3 91.47139268 0.58224163 172 1506906 39.61 12214 SAMN36690183 SRR25395175 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-24__bin.18 98.11320755 1.194968553 59 2004211 40.32 49740 SAMN36690183 SRR25395175 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 FontanaF_2023__SRR20746866__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-24__bin.5 74.30783542 1.395939086 679 2113538 69.94 3341 SAMN36690183 SRR25395175 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q02-23__bin.9 AlvarezOrdonezA_xxxx__Q02-24__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium lacticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-24__bin.13 65.61259921 0.690310847 34 2971506 56 187399 SAMN36690183 SRR25395175 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q02-30__bin.22 AlvarezOrdonezA_xxxx__Q02-30__bin.22 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella ornithinolytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-25__bin.5 68.44827586 0.862068966 160 1970395 34.5 23483 SAMN36690184 SRR25395174 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-25__bin.6 71.05263158 0 264 1095849 38.68 4810 SAMN36690184 SRR25395174 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic AlvarezOrdonezA_xxxx__Q02-23__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-25__bin.4 76.84627781 0.145560408 228 1241551 40.04 6208 SAMN36690184 SRR25395174 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-25__bin.15 97.9245283 0.880503145 74 1976867 40.53 37468 SAMN36690184 SRR25395174 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 FontanaF_2023__SRR20746866__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-25__bin.18 68.73759921 0.392691799 28 3004067 56.01 163469 SAMN36690184 SRR25395174 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q02-30__bin.22 AlvarezOrdonezA_xxxx__Q02-30__bin.22 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella ornithinolytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-26__bin.6 51.31004367 0.145560408 45 874222 40.4 24966 SAMN36690185 SRR25395173 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-26__bin.7 98.11320755 1.289308176 90 2125036 40.16 39516 SAMN36690185 SRR25395173 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 FontanaF_2023__SRR20746866__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-26__bin.3 65.58815127 1.087744743 654 2037835 70 3494 SAMN36690185 SRR25395173 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q02-23__bin.9 AlvarezOrdonezA_xxxx__Q02-26__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium lacticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-26__bin.10 64.71974206 0.243882275 39 2796448 56.14 94587 SAMN36690185 SRR25395173 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q02-30__bin.22 AlvarezOrdonezA_xxxx__Q02-30__bin.22 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella ornithinolytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-26__bin.12 72.5136668 4.54909718 170 1941364 35.83 24164 SAMN36690185 SRR25395173 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-27__bin.2 62.57053292 0 160 4241546 49.03 42519 SAMN36690499 SRR25395337 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811283__bin.7 AlvarezOrdonezA_xxxx__Q02-29__bin.13 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia alvei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-27__bin.15 64.36781609 0 304 1343146 35.71 5319 SAMN36690499 SRR25395337 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 AlvarezOrdonezA_xxxx__Q02-28__bin.23 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-27__bin.13 92.59259259 1.234567901 32 1919195 37.6 117913 SAMN36690499 SRR25395337 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-27__bin.14 88.32618903 1.761006289 155 1766730 40.58 22597 SAMN36690499 SRR25395337 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 FontanaF_2023__SRR20746866__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-27__bin.3 57.04918033 0.081967213 13 2053777 53.15 248813 SAMN36690499 SRR25395337 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q04-21__bin.16 AlvarezOrdonezA_xxxx__Q04-21__bin.16 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Rahnella Rahnella inusitata cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-27__bin.6 64.29467085 0 195 4669226 48.02 39551 SAMN36690499 SRR25395337 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811137__bin.9 AlvarezOrdonezA_xxxx__Q02-27__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia paralvei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-27__bin.1 97.07303713 2.64436821 200 2692077 35.08 32396 SAMN36690499 SRR25395337 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__U-2-10__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-27__bin.12 95.50961607 1.588342441 291 4477763 51.19 26371 SAMN36690499 SRR25395337 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q02-27__bin.12 AlvarezOrdonezA_xxxx__Q02-27__bin.12 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Buttiauxella Buttiauxella agrestis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-27__bin.5 92.9 0.2 1323 32081246 48.47 37635 SAMN36690499 SRR25395337 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__O-30__bin.13 MASTER_WP4_UNINA_2__O-30__bin.13 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium camemberti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-27__bin.7 98.4 0.1 386 11640392 36.34 60288 SAMN36690499 SRR25395337 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-27__bin.9 89.3 0.2 7307 28272458 33.67 4522 SAMN36690499 SRR25395337 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2638__bin.9 MASTER_WP4_CSIC_2__P2638__bin.9 Mucoromycota;Mucoromycetes;Mucorales;Mucoraceae;Mucor Mucor racemosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-28__bin.8 94.28848499 0.388636364 165 4255826 49.07 42527 SAMN36690500 SRR25395336 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811283__bin.7 AlvarezOrdonezA_xxxx__Q02-29__bin.13 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia alvei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-28__bin.23 76.23301985 1.724137931 343 2137184 35 8675 SAMN36690500 SRR25395336 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 AlvarezOrdonezA_xxxx__Q02-28__bin.23 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-28__bin.16 100 1.234567901 84 2044353 37.74 45422 SAMN36690500 SRR25395336 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-28__bin.10 90.37735849 1.320754717 155 1984889 40.28 26322 SAMN36690500 SRR25395336 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 FontanaF_2023__SRR20746866__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-28__bin.22 70.20108628 1.31335106 678 2013415 70.12 3205 SAMN36690500 SRR25395336 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q02-23__bin.9 AlvarezOrdonezA_xxxx__Q02-28__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium lacticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-28__bin.17 94.25760582 1.863366875 257 5047445 56.44 27961 SAMN36690500 SRR25395336 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q02-30__bin.22 AlvarezOrdonezA_xxxx__Q02-30__bin.22 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella ornithinolytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-28__bin.15 89.83606557 0.081967213 24 3887477 53.34 322720 SAMN36690500 SRR25395336 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q04-21__bin.16 AlvarezOrdonezA_xxxx__Q04-21__bin.16 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Rahnella Rahnella inusitata cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-28__bin.9 93.60503579 0.579710145 276 2244399 46.97 11001 SAMN36690500 SRR25395336 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-28__bin.20 81.78506375 4.371584699 732 2784382 35.18 4455 SAMN36690500 SRR25395336 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2146_73322__bin.6 AlvarezOrdonezA_xxxx__Q02-28__bin.20 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Carnobacterium Carnobacterium maltaromaticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-28__bin.13 96.3175824 4.088050314 223 2642903 35.19 24124 SAMN36690500 SRR25395336 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__U-2-10__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-29__bin.13 94.90874033 0.388636364 170 4296876 49.05 45169 SAMN36690501 SRR25395335 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811283__bin.7 AlvarezOrdonezA_xxxx__Q02-29__bin.13 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia alvei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-29__bin.12 60.44213474 0 303 1141901 35.96 4265 SAMN36690501 SRR25395335 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 WalshL_xxxx__B1__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-29__bin.3 93.65079365 1.234567901 38 1960115 37.56 111611 SAMN36690501 SRR25395335 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-29__bin.7 92.67924528 2.319943193 203 1915146 40.52 13933 SAMN36690501 SRR25395335 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 FontanaF_2023__SRR20746866__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-29__bin.2 58.68852459 0.081967213 13 2145037 53.28 248651 SAMN36690501 SRR25395335 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q04-21__bin.16 AlvarezOrdonezA_xxxx__Q04-21__bin.16 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Rahnella Rahnella inusitata cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-29__bin.18 54.96865204 1.724137931 217 4365763 48.04 34745 SAMN36690501 SRR25395335 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811137__bin.9 AlvarezOrdonezA_xxxx__Q02-27__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia paralvei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-29__bin.8 94.72806636 4.327975724 591 5928491 60.96 15822 SAMN36690501 SRR25395335 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. OlgaP_2019__SRR11909887__bin.1 OlgaP_2019__SRR11909887__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E shahriarae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-29__bin.5 86.2 0.1 1055 10025570 36.81 13327 SAMN36690501 SRR25395335 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-29__bin.6 71 0.6 7401 22360113 34.68 3199 SAMN36690501 SRR25395335 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2638__bin.9 AlvarezOrdonezA_xxxx__Q02-29__bin.6 Mucoromycota;Mucoromycetes;Mucorales;Mucoraceae;Mucor Mucor racemosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-30__bin.9 66.88087774 0 177 4400472 48.94 42356 SAMN36690502 SRR25395334 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811283__bin.7 AlvarezOrdonezA_xxxx__Q02-29__bin.13 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia alvei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-30__bin.11 71.0031348 1.724137931 374 1866791 35.09 6148 SAMN36690502 SRR25395334 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 AlvarezOrdonezA_xxxx__Q02-28__bin.23 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-30__bin.29 93.17468046 1.886792453 181 2027597 40.22 18023 SAMN36690502 SRR25395334 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 FontanaF_2023__SRR20746866__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-30__bin.21 66.98892478 3.934010152 678 2004056 69.61 3103 SAMN36690502 SRR25395334 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q02-23__bin.9 AlvarezOrdonezA_xxxx__Q02-30__bin.21 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium lacticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-30__bin.22 97.05423052 2.24956302 237 5135934 56.43 31170 SAMN36690502 SRR25395334 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q02-30__bin.22 AlvarezOrdonezA_xxxx__Q02-30__bin.22 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella ornithinolytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-30__bin.14 75.08196721 0.081967213 28 3847919 53.1 266524 SAMN36690502 SRR25395334 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q04-21__bin.16 AlvarezOrdonezA_xxxx__Q04-21__bin.16 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Rahnella Rahnella inusitata cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-30__bin.26 61.70846395 0 283 4513014 48.15 25892 SAMN36690502 SRR25395334 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811137__bin.9 AlvarezOrdonezA_xxxx__Q02-27__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia paralvei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-30__bin.17 95.4265192 0 174 2336437 46.87 19720 SAMN36690502 SRR25395334 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 AlvarezOrdonezA_xxxx__Q02-30__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q02-30__bin.25 66.4298725 1.821493625 636 1955803 35.98 3214 SAMN36690502 SRR25395334 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2146_73322__bin.6 AlvarezOrdonezA_xxxx__Q02-28__bin.20 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Carnobacterium Carnobacterium maltaromaticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-23__bin.4 55.17241379 3.448275862 358 1348524 34.74 4337 SAMN36690186 SRR25395172 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 AlvarezOrdonezA_xxxx__Q03-23__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-23__bin.1 91.80390934 2.423580786 136 1527158 39.21 13612 SAMN36690186 SRR25395172 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-23__bin.2 80.54043127 4.622641509 434 2130711 35.4 6228 SAMN36690186 SRR25395172 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 AlvarezOrdonezA_xxxx__Q03-23__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-24__bin.3 92.09033186 0.531295488 131 1460798 39.31 14972 SAMN36690187 SRR25395170 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-24__bin.2 88.14069791 4.056603774 458 2846799 34.6 8163 SAMN36690187 SRR25395170 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-25__bin.2 93.23144105 0.800582242 127 1539266 39.25 18354 SAMN36690188 SRR25395430 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-25__bin.3 82.21003135 0 375 2614495 34.97 10274 SAMN36690188 SRR25395430 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-26__bin.2 65.64263323 2.298850575 473 1963837 34.4 4861 SAMN36690189 SRR25395429 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 AlvarezOrdonezA_xxxx__Q03-27__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-26__bin.3 95.44881126 0.877001456 130 1553969 39.25 17899 SAMN36690189 SRR25395429 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-26__bin.1 84.7492163 0 450 2834519 34.92 8807 SAMN36690189 SRR25395429 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-26__bin.4 73.80851149 1.293103448 525 1986419 61.76 4313 SAMN36690189 SRR25395429 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic AlvarezOrdonezA_xxxx__Q03-22__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-27__bin.7 92.93351303 4.650537634 462 2459727 34.66 6696 SAMN36690503 SRR25395332 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 AlvarezOrdonezA_xxxx__Q03-27__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-27__bin.2 99.09024745 0.836972344 106 1687456 39.03 27152 SAMN36690503 SRR25395332 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-27__bin.4 67.01897145 2.14673913 405 1433366 46.97 3808 SAMN36690503 SRR25395332 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 AlvarezOrdonezA_xxxx__Q03-27__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-27__bin.6 77.03761755 0 423 2759055 34.91 10077 SAMN36690503 SRR25395332 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-27__bin.3 96.26152833 0.543478261 126 2817740 46.72 50710 SAMN36690503 SRR25395332 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 DeFilippisF_xxxx__DF_96__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-27__bin.10 85.97606582 0.589005236 469 1969170 39.05 5052 SAMN36690503 SRR25395332 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-28__bin.12 98.68995633 1.819505095 100 1659690 39.1 28718 SAMN36690504 SRR25395331 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-28__bin.1 65.9271797 1.343440122 416 1427348 46.83 3644 SAMN36690504 SRR25395331 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 AlvarezOrdonezA_xxxx__Q03-28__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-28__bin.5 79.78056426 3.448275862 483 2533442 35.25 7321 SAMN36690504 SRR25395331 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-28__bin.10 97.31988073 0 147 2906466 46.75 40111 SAMN36690504 SRR25395331 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 DeFilippisF_xxxx__DF_96__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-28__bin.11 96.4375 0 117 2255728 43.85 33617 SAMN36690504 SRR25395331 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-28__bin.7 80.56426332 4.858934169 426 1947221 43.69 5473 SAMN36690504 SRR25395331 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 AlvarezOrdonezA_xxxx__Q03-28__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-28__bin.6 58.54816593 0.047596383 414 1323050 39.73 3559 SAMN36690504 SRR25395331 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic AlvarezOrdonezA_xxxx__Q03-28__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-29__bin.13 97.9245283 0.314465409 133 2244014 35 31882 SAMN36690505 SRR25395330 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-29__bin.8 98.88888889 0 169 2778102 32.9 26914 SAMN36690505 SRR25395330 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 AlvarezOrdonezA_xxxx__Q03-29__bin.8 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-29__bin.17 94.3 0.2 849 31533273 48.48 61295 SAMN36690505 SRR25395330 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__O-30__bin.13 MASTER_WP4_UNINA_2__O-30__bin.13 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium camemberti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-29__bin.2 92.2 0.1 675 23511713 52.08 53797 SAMN36690505 SRR25395330 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q03-30__bin.8 AlvarezOrdonezA_xxxx__Q03-30__bin.8 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;unknown unknown cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-30__bin.11 97.9245283 1.698113208 286 2300291 35.06 11418 SAMN36690506 SRR25395329 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-30__bin.7 99.89082969 0.473071325 56 1698118 39.07 52639 SAMN36690506 SRR25395329 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-30__bin.10 96.11111111 2.518518519 287 2896477 32.79 15627 SAMN36690506 SRR25395329 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 AlvarezOrdonezA_xxxx__Q03-29__bin.8 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-30__bin.5 100 0 52 4126016 62.29 141945 SAMN36690506 SRR25395329 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q03-30__bin.5 AlvarezOrdonezA_xxxx__Q03-30__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-30__bin.1 99.12280702 0.14619883 327 4450926 70.03 21779 SAMN36690506 SRR25395329 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q03-30__bin.1 AlvarezOrdonezA_xxxx__Q03-30__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-30__bin.8 92.7 0.1 740 23618290 52.2 49308 SAMN36690506 SRR25395329 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q03-30__bin.8 AlvarezOrdonezA_xxxx__Q03-30__bin.8 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;unknown unknown cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q03-30__bin.4 94.6 0.3 1088 32006948 48.5 47699 SAMN36690506 SRR25395329 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__O-30__bin.13 MASTER_WP4_UNINA_2__O-30__bin.13 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium camemberti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-23__bin.7 77.19910249 1.351805642 235 1238131 39.39 6740 SAMN36690190 SRR25395428 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 AlvarezOrdonezA_xxxx__Q04-23__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-23__bin.8 51.17554859 0 77 858621 36.37 21500 SAMN36690190 SRR25395428 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-24__bin.3 90.54489201 2.610062893 334 2302335 34.72 10504 SAMN36690191 SRR25395427 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-24__bin.6 51.72413793 0 122 570121 40.02 5662 SAMN36690191 SRR25395427 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-24__bin.2 51.88087774 0 260 917562 41.97 4039 SAMN36690191 SRR25395427 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 AlvarezOrdonezA_xxxx__Q04-24__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-24__bin.9 64.36396835 1.603773585 188 1819153 35.25 17429 SAMN36690191 SRR25395427 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-24__bin.10 78.34821429 0.696988197 26 3362926 55.6 248351 SAMN36690191 SRR25395427 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS08-29__bin.64 AlvarezOrdonezA_xxxx__Q04-30__bin.13 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Serratia Serratia liquefaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-25__bin.9 92.14303104 0.943396226 326 2226985 34.77 11196 SAMN36690192 SRR25395426 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-25__bin.18 71.35513441 1.405177792 242 1238105 39.25 6082 SAMN36690192 SRR25395426 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 AlvarezOrdonezA_xxxx__Q04-27__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-25__bin.14 97.45042935 0.081967213 174 4774332 53.57 38902 SAMN36690192 SRR25395426 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q04-21__bin.16 AlvarezOrdonezA_xxxx__Q04-21__bin.16 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Rahnella Rahnella inusitata cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-25__bin.12 90.7270817 1.144654088 302 2117966 35.51 9948 SAMN36690192 SRR25395426 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-25__bin.3 64.52546296 0.446428571 14 2855042 55.68 359817 SAMN36690192 SRR25395426 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS08-29__bin.64 AlvarezOrdonezA_xxxx__Q04-30__bin.13 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Serratia Serratia liquefaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-25__bin.7 58.62068966 0 540 2250292 61.69 4580 SAMN36690192 SRR25395426 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic AlvarezOrdonezA_xxxx__Q04-25__bin.7 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-25__bin.4 64.13974919 0.482895727 95 3113444 60.06 51927 SAMN36690192 SRR25395426 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q04-26__bin.13 AlvarezOrdonezA_xxxx__Q04-26__bin.13 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E haemolytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-26__bin.3 90.27426945 0.473484848 314 2008810 34.96 9063 SAMN36690193 SRR25395424 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-26__bin.2 99.30054645 0.245901639 59 4975306 53.12 120084 SAMN36690193 SRR25395424 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q04-21__bin.16 AlvarezOrdonezA_xxxx__Q04-21__bin.16 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Rahnella Rahnella inusitata cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-26__bin.8 92.06522621 1.635220126 210 2257955 35.6 18602 SAMN36690193 SRR25395424 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-26__bin.9 60.34482759 2.586206897 529 2409138 61.54 5085 SAMN36690193 SRR25395424 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic AlvarezOrdonezA_xxxx__Q04-25__bin.7 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-26__bin.13 82.54382096 0.454957181 98 4091989 59.97 63567 SAMN36690193 SRR25395424 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q04-26__bin.13 AlvarezOrdonezA_xxxx__Q04-26__bin.13 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E haemolytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-27__bin.9 53.01462905 0 298 1034565 42.19 3851 SAMN36690507 SRR25395328 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 AlvarezOrdonezA_xxxx__Q04-27__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-27__bin.8 91.59363059 0.883838384 336 2493896 34.5 13994 SAMN36690507 SRR25395328 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-27__bin.16 61.1043856 2.582920862 408 1248693 39.08 3167 SAMN36690507 SRR25395328 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic AlvarezOrdonezA_xxxx__Q04-27__bin.16 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-27__bin.11 79.10276319 0.870243294 244 1214885 39.47 6336 SAMN36690507 SRR25395328 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 AlvarezOrdonezA_xxxx__Q04-27__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-27__bin.2 64.43452381 0 106 3665212 55.57 57889 SAMN36690507 SRR25395328 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS08-29__bin.64 AlvarezOrdonezA_xxxx__Q04-30__bin.13 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Serratia Serratia liquefaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-27__bin.5 76.71502976 4.776785714 667 2723493 40.56 4916 SAMN36690507 SRR25395328 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 FontanaF_2023__SRR20746856__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-27__bin.15 99.0625 0.416666667 43 2352931 42.56 175959 SAMN36690507 SRR25395328 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-27__bin.4 92.62213651 3.713768116 371 2392397 40.88 9062 SAMN36690507 SRR25395328 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 AlvarezOrdonezA_xxxx__Q04-27__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-28__bin.15 68.60830745 3.668478261 289 1005163 42.44 3649 SAMN36690508 SRR25395327 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 AlvarezOrdonezA_xxxx__Q04-28__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-28__bin.7 91.84287894 4.861111111 330 2520208 34.87 13512 SAMN36690508 SRR25395327 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-28__bin.3 78.68919052 3.795487627 278 1367460 39.4 6160 SAMN36690508 SRR25395327 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 AlvarezOrdonezA_xxxx__Q04-28__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-28__bin.4 85.01009794 3.522012579 299 2203357 36.08 10504 SAMN36690508 SRR25395327 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-28__bin.6 71.875 0.446428571 37 2664187 55.89 118473 SAMN36690508 SRR25395327 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS08-29__bin.64 AlvarezOrdonezA_xxxx__Q04-30__bin.13 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Serratia Serratia liquefaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-28__bin.13 99.0625 0.625 26 2273780 42.57 195599 SAMN36690508 SRR25395327 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-29__bin.4 97.61006289 1.603773585 311 2281441 34.95 12024 SAMN36690509 SRR25395326 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-29__bin.8 90.66265574 3.968253968 179 1849671 37.55 20154 SAMN36690509 SRR25395326 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-29__bin.9 74.76135006 3.476430976 687 2416797 32.93 3829 SAMN36690509 SRR25395326 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259377__bin.4 AlvarezOrdonezA_xxxx__Q04-29__bin.9 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-29__bin.10 93.16860465 2.810077519 537 3470292 63.25 9086 SAMN36690509 SRR25395326 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 AlvarezOrdonezA_xxxx__Q04-29__bin.10 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-29__bin.2 53.97660819 2.485380117 901 2361350 69.83 2611 SAMN36690509 SRR25395326 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__771_Tarentaise__bin.3 AlvarezOrdonezA_xxxx__Q04-29__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium tyrofermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-29__bin.7 94.5 0.3 1615 33330754 48.39 31588 SAMN36690509 SRR25395326 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2560__bin.1 MASTER_WP4_CSIC_2__P2560__bin.1 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium sp SPG F1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-29__bin.11 98.9 0.1 309 12030465 36.26 85637 SAMN36690509 SRR25395326 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-30__bin.6 91.46286232 0.561009818 241 1563372 42.56 8422 SAMN36690510 SRR25395325 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-30__bin.8 94.47193711 2.335858586 359 2229207 34.99 9396 SAMN36690510 SRR25395325 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-30__bin.13 98.21428571 0.669642857 225 4825815 55.9 35550 SAMN36690510 SRR25395325 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS08-29__bin.64 AlvarezOrdonezA_xxxx__Q04-30__bin.13 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Serratia Serratia liquefaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-30__bin.1 82.69713262 3.351851852 728 3209264 32.85 5305 SAMN36690510 SRR25395325 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259377__bin.4 AlvarezOrdonezA_xxxx__Q04-30__bin.1 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-30__bin.2 81.61683278 1.889534884 531 2819282 63.25 6860 SAMN36690510 SRR25395325 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 AlvarezOrdonezA_xxxx__Q04-29__bin.10 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-30__bin.11 72.33974227 1.868950393 611 1923064 61.77 3483 SAMN36690510 SRR25395325 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic AlvarezOrdonezA_xxxx__Q04-30__bin.11 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-30__bin.7 94.73684211 3.947368421 1063 4923961 69.71 6211 SAMN36690510 SRR25395325 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__771_Tarentaise__bin.3 AlvarezOrdonezA_xxxx__Q04-30__bin.7 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium tyrofermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-30__bin.3 82.52117603 0.839355391 90 3988369 59.9 69471 SAMN36690510 SRR25395325 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q04-26__bin.13 AlvarezOrdonezA_xxxx__Q04-26__bin.13 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E haemolytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-30__bin.20 92.4 0.3 2488 32482761 48.48 18432 SAMN36690510 SRR25395325 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2560__bin.1 MASTER_WP4_CSIC_2__P2560__bin.1 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium sp SPG F1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q04-30__bin.10 62.7 0 2319 8386197 37.3 4211 SAMN36690510 SRR25395325 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q05-23__bin.2 53.50574713 0 431 1487837 34.75 3868 SAMN36690194 SRR25395423 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 AlvarezOrdonezA_xxxx__Q05-23__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q05-23__bin.1 72.81659389 0.145560408 43 1273379 38.63 51901 SAMN36690194 SRR25395423 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q05-23__bin.4 90.94679909 1.823899371 177 2288778 35.51 20691 SAMN36690194 SRR25395423 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q05-24__bin.4 61.09195402 1.724137931 432 1461972 34.96 3785 SAMN36690195 SRR25395422 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 AlvarezOrdonezA_xxxx__Q05-24__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q05-24__bin.3 99.89082969 0.58224163 54 1702038 39.03 62747 SAMN36690195 SRR25395422 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q05-24__bin.1 90.3685885 2.012578616 206 2452715 35.44 20014 SAMN36690195 SRR25395422 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q05-25__bin.1 50.18195051 0 28 862500 38.27 51944 SAMN36690196 SRR25395421 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q05-25__bin.5 95.69536424 0 425 1861451 36.34 5177 SAMN36690196 SRR25395421 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 AlvarezOrdonezA_xxxx__Q05-22__bin.4 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q05-26__bin.7 54.31034483 0 314 1008315 35.14 3447 SAMN36690197 SRR25395420 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 AlvarezOrdonezA_xxxx__Q05-26__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q05-26__bin.5 63.5007278 0 29 1060943 38.49 62747 SAMN36690197 SRR25395420 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q05-26__bin.3 94.70198675 0 105 2099113 35.74 31067 SAMN36690197 SRR25395420 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 AlvarezOrdonezA_xxxx__Q05-22__bin.4 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q05-26__bin.2 59.79105572 1.136363636 267 1321991 39.77 6077 SAMN36690197 SRR25395420 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-26__bin.2 AlvarezOrdonezA_xxxx__Q05-26__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus rostri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q05-27__bin.5 78.06261688 0.27173913 338 1308212 42.86 4599 SAMN36690511 SRR25395324 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 AlvarezOrdonezA_xxxx__Q05-27__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q05-27__bin.7 97.98742138 1.509433962 223 2426152 34.82 20388 SAMN36690511 SRR25395324 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q05-27__bin.2 99.89082969 0.145560408 51 1684902 39.03 62747 SAMN36690511 SRR25395324 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q05-27__bin.6 90.99640611 1.132075472 288 2098575 35.66 10192 SAMN36690511 SRR25395324 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q05-27__bin.1 97.83950617 3.086419753 80 2803924 44.9 61039 SAMN36690511 SRR25395324 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FontanaF_2023__SRR20746964__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q05-27__bin.4 97.69021739 1.358695652 231 2526016 43.23 16593 SAMN36690511 SRR25395324 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 MASTER_WP4_CSIC_2__P2628__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q05-28__bin.3 99.24528302 2.893081761 215 2436757 34.84 21440 SAMN36690512 SRR25395323 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q05-28__bin.5 98.1441048 0.145560408 66 1712314 39.04 62747 SAMN36690512 SRR25395323 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q05-28__bin.7 87.57833047 0.503144654 253 1964132 35.63 10515 SAMN36690512 SRR25395323 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q05-28__bin.2 97.22222222 3.395061728 182 2740247 45.04 19733 SAMN36690512 SRR25395323 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FontanaF_2023__SRR20746964__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q05-28__bin.4 90.85144928 2.445652174 286 2329891 43.61 10883 SAMN36690512 SRR25395323 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 MASTER_WP4_CSIC_2__P2628__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q05-29__bin.2 95.58039617 1.540880503 300 2316486 34.85 11830 SAMN36690513 SRR25395321 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q05-29__bin.1 100 3.448275862 63 1715390 39.07 44307 SAMN36690513 SRR25395321 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q05-30__bin.1 95.95848319 1.509433962 228 2319595 34.84 17187 SAMN36690514 SRR25395320 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q05-30__bin.8 71.89124558 0 40 1233294 38.67 51926 SAMN36690514 SRR25395320 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q05-30__bin.3 86.2962963 1.759259259 446 2023408 33.9 5408 SAMN36690514 SRR25395320 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 AlvarezOrdonezA_xxxx__Q05-30__bin.3 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-23__bin.2 95.27693244 1.763865066 213 2196185 34.95 17480 SAMN36690198 SRR25395419 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-23__bin.3 98.72634643 0.436681223 72 1681892 39.04 39586 SAMN36690198 SRR25395419 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-23__bin.4 74.42528736 0 263 1932886 35.48 10063 SAMN36690198 SRR25395419 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-23__bin.1 70.96115774 0.043554007 77 3008156 51.53 60047 SAMN36690198 SRR25395419 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967688__bin.2 LeechJ_2020__ERS3967688__bin.2 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-24__bin.2 97.15966728 1.823899371 259 2415614 34.95 16798 SAMN36690199 SRR25395418 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-24__bin.5 99.30858806 2.11062591 95 1723432 39 35031 SAMN36690199 SRR25395418 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-24__bin.3 90.99792772 1.446540881 373 2133339 35.42 7898 SAMN36690199 SRR25395418 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-24__bin.6 87.06287615 0.104529617 101 3652607 51.48 57336 SAMN36690199 SRR25395418 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967688__bin.2 LeechJ_2020__ERS3967688__bin.2 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-25__bin.3 95.7196692 3.756313131 366 2703212 34.59 12851 SAMN36690200 SRR25395417 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-25__bin.8 99.16302766 0.58224163 105 1722684 38.96 33182 SAMN36690200 SRR25395417 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-25__bin.2 91.90236817 0.786163522 143 1982671 35.6 24122 SAMN36690200 SRR25395417 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-25__bin.9 85.90433956 0.104529617 51 3686917 51.04 113758 SAMN36690200 SRR25395417 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967688__bin.2 LeechJ_2020__ERS3967688__bin.2 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-25__bin.5 99.79794993 0.113697164 88 2410179 32.18 43726 SAMN36690200 SRR25395417 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q06-25__bin.5 AlvarezOrdonezA_xxxx__Q06-25__bin.5 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus epidermidis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-26__bin.1 95.23294714 3.440656566 324 2570288 34.86 14616 SAMN36690201 SRR25395416 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-26__bin.11 97.72925764 0.727802038 108 1684258 38.93 27443 SAMN36690201 SRR25395416 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-26__bin.5 92.21683358 0.597484277 143 1966105 35.54 23918 SAMN36690201 SRR25395416 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-26__bin.8 91.52248919 0.877544986 323 2197837 32.45 8619 SAMN36690201 SRR25395416 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q06-25__bin.5 AlvarezOrdonezA_xxxx__Q06-25__bin.5 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus epidermidis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-27__bin.6 94.05209428 4.622641509 383 2765276 34.64 11772 SAMN36690515 SRR25394976 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-27__bin.9 97.14701601 2.092430859 170 1712141 38.95 16168 SAMN36690515 SRR25394976 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-27__bin.4 93.43507811 0.974842767 260 2122138 35.44 12193 SAMN36690515 SRR25394976 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-27__bin.7 99.38271605 2.777777778 52 3024068 44.83 125018 SAMN36690515 SRR25394976 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 AlvarezOrdonezA_xxxx__Q06-27__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-27__bin.2 89.68253968 1.657848325 314 1454065 39.94 5816 SAMN36690515 SRR25394976 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-28__bin.6 94.21969236 3.773584906 324 2699361 34.56 15272 SAMN36690516 SRR25394975 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-28__bin.7 96.83163513 3.16775837 181 1669387 39.1 14006 SAMN36690516 SRR25394975 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-28__bin.8 77.99815372 2.305253623 450 1937709 46.8 4802 SAMN36690516 SRR25394975 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 AlvarezOrdonezA_xxxx__Q06-28__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-28__bin.1 84.92874533 1.257861635 407 2045399 35.58 6087 SAMN36690516 SRR25394975 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-28__bin.2 97.34848485 0 47 2921246 46.65 88647 SAMN36690516 SRR25394975 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-28__bin.3 99.38271605 2.777777778 53 3110547 44.7 97600 SAMN36690516 SRR25394975 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 AlvarezOrdonezA_xxxx__Q06-27__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-28__bin.4 100 0 58 1708303 39.27 45898 SAMN36690516 SRR25394975 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-28__bin.11 98.15068493 0 300 3076473 42.04 15099 SAMN36690516 SRR25394975 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-26__bin.7 AlvarezOrdonezA_xxxx__Q06-28__bin.11 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter johnsonii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-28__bin.5 96.8134192 0.694094788 271 2682859 33.02 16882 SAMN36690516 SRR25394975 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0136-001_Staphylococcus_aureus_18SBCL679 DeFilippisF_xxxx__DF_102__bin.3 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus aureus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-29__bin.8 87.61003674 0.451237263 395 1694419 39.73 5293 SAMN36690517 SRR25394974 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-29__bin.7 99.44444444 2.361111111 51 3167786 33.05 210552 SAMN36690517 SRR25394974 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259377__bin.4 AlvarezOrdonezA_xxxx__Q06-30__bin.11 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-29__bin.4 80.8901862 1.556776557 647 2382454 44.71 4096 SAMN36690517 SRR25394974 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q06-29__bin.4 AlvarezOrdonezA_xxxx__Q06-29__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter piscatorii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-29__bin.1 98.3 0.1 323 11833273 36.29 96443 SAMN36690517 SRR25394974 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-30__bin.8 66.49178332 0 374 1356244 36.31 4247 SAMN36690518 SRR25394973 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 AlvarezOrdonezA_xxxx__Q06-30__bin.8 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-30__bin.7 92.36778263 1.818205448 146 1532154 39.62 16781 SAMN36690518 SRR25394973 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-30__bin.11 99.44444444 0 52 3007018 33 154403 SAMN36690518 SRR25394973 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259377__bin.4 AlvarezOrdonezA_xxxx__Q06-30__bin.11 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-30__bin.4 92.46367787 0.093399751 418 2709732 42.5 8588 SAMN36690518 SRR25394973 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-26__bin.7 AlvarezOrdonezA_xxxx__Q06-28__bin.11 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter johnsonii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-30__bin.6 86.34987193 0.731815494 328 2208657 33.24 9903 SAMN36690518 SRR25394973 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0136-001_Staphylococcus_aureus_18SBCL679 DeFilippisF_xxxx__DF_102__bin.3 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus aureus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-30__bin.1 79.9 3.4 3667 22356943 48.67 7651 SAMN36690518 SRR25394973 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q06-30__bin.1 AlvarezOrdonezA_xxxx__Q06-30__bin.1 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium unknown cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-30__bin.5 51.8 2.9 7842 25807546 48.48 3488 SAMN36690518 SRR25394973 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__O-30__bin.13 AlvarezOrdonezA_xxxx__Q06-30__bin.5 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium camemberti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q06-30__bin.10 97.2 0.1 424 11793653 36.26 64324 SAMN36690518 SRR25394973 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-23__bin.3 88.78258544 1.257861635 289 2059424 34.89 11187 SAMN36690202 SRR25395415 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-23__bin.1 97.67727178 0.727802038 95 1614184 39.25 26513 SAMN36690202 SRR25395415 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-23__bin.2 86.12852665 0.862068966 224 2184976 35.5 16606 SAMN36690202 SRR25395415 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-24__bin.3 89.74718779 1.704545455 308 2143104 34.72 10460 SAMN36690203 SRR25395413 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-24__bin.1 90.45019755 0.727802038 65 1494540 39.48 42846 SAMN36690203 SRR25395413 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-24__bin.2 91.03459119 1.352201258 277 2321480 35.28 12256 SAMN36690203 SRR25395413 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-25__bin.1 91.67967246 1.862373737 420 2410018 34.61 7891 SAMN36690204 SRR25395412 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-25__bin.2 100 4.07523511 112 1662657 39.18 25581 SAMN36690204 SRR25395412 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-25__bin.5 93.23058601 0.786163522 276 2472099 35.25 18329 SAMN36690204 SRR25395412 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-26__bin.4 90.13750715 4.468452019 408 2508603 34.6 9948 SAMN36690205 SRR25395411 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-26__bin.1 96.19161653 1.979621543 112 1609504 39.28 23960 SAMN36690205 SRR25395411 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-26__bin.3 90.29001826 1.603773585 359 2727271 34.82 14190 SAMN36690205 SRR25395411 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-27__bin.6 61.19506779 0 298 1011539 43.11 3697 SAMN36690519 SRR25394972 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 AlvarezOrdonezA_xxxx__Q07-27__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-27__bin.5 87.88968312 1.816552623 348 2376300 34.56 10725 SAMN36690519 SRR25394972 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-27__bin.4 97.78644209 1.322173702 98 1686562 39.12 33249 SAMN36690519 SRR25394972 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-27__bin.2 96.35869565 0.675863991 197 2260856 46.87 18557 SAMN36690519 SRR25394972 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-27__bin.9 93.1344086 2.106918239 369 2715060 35.01 12288 SAMN36690519 SRR25394972 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-27__bin.7 98.15625 1.458333333 223 3319614 40.12 24308 SAMN36690519 SRR25394972 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 LandisEA_2021__SRS5653155__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-27__bin.1 97.5 1.09375 130 2241636 42.63 28193 SAMN36690519 SRR25394972 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-27__bin.8 96.4673913 0.815217391 301 2341293 43.45 10178 SAMN36690519 SRR25394972 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 AlvarezOrdonezA_xxxx__Q07-27__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-28__bin.2 92.82567919 1.509433962 284 2222566 34.79 12826 SAMN36690520 SRR25394971 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-28__bin.3 99.76606363 0.873362445 78 1719384 39.02 44827 SAMN36690520 SRR25394971 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-28__bin.6 92.49849034 0.27173913 196 2163169 46.87 18912 SAMN36690520 SRR25394971 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-28__bin.8 79.62382445 0 411 2204182 35.59 7124 SAMN36690520 SRR25394971 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-28__bin.4 95.85714286 4.253472222 387 3353992 40.18 12618 SAMN36690520 SRR25394971 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 LandisEA_2021__SRS5653155__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-28__bin.5 87.04861111 1.9140625 277 2232175 42.78 11251 SAMN36690520 SRR25394971 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-28__bin.1 90.67028986 0.883152174 313 2269402 43.56 9590 SAMN36690520 SRR25394971 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 AlvarezOrdonezA_xxxx__Q07-27__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-29__bin.8 59.55137395 0.833333333 377 1206073 34.67 3393 SAMN36690521 SRR25394970 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 AlvarezOrdonezA_xxxx__Q07-29__bin.8 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-29__bin.24 95.09966777 2.325581395 317 4026212 62.97 20775 SAMN36690521 SRR25394970 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 AlvarezOrdonezA_xxxx__Q07-30__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-29__bin.1 98.37837838 1.081081081 185 3400909 70.98 31111 SAMN36690521 SRR25394970 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q07-29__bin.1 AlvarezOrdonezA_xxxx__Q07-29__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Dermatophilaceae;Janibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-29__bin.12 98.91891892 1.081081081 148 4057938 68.67 52309 SAMN36690521 SRR25394970 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q07-30__bin.12 AlvarezOrdonezA_xxxx__Q07-30__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Dermatophilaceae;Demetria NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-29__bin.11 79.14546605 3.173740511 847 5221740 63.38 8611 SAMN36690521 SRR25394970 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q07-29__bin.11 AlvarezOrdonezA_xxxx__Q07-29__bin.11 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Williamsia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-29__bin.13 97.06959707 0.769230769 708 6506289 70.19 13319 SAMN36690521 SRR25394970 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q07-29__bin.13 AlvarezOrdonezA_xxxx__Q07-29__bin.13 Actinomycetota;Actinomycetes;Streptosporangiales;Streptosporangiaceae;Murinocardiopsis NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-29__bin.15 96.28099174 3.787878788 284 3551284 64.43 22201 SAMN36690521 SRR25394970 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q07-30__bin.14 AlvarezOrdonezA_xxxx__Q07-30__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-29__bin.22 85.81043353 4.109025033 886 4914780 63.57 7310 SAMN36690521 SRR25394970 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q07-30__bin.31 AlvarezOrdonezA_xxxx__Q07-30__bin.31 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Williamsia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-29__bin.23 80.1 0.2 3751 28804198 48.61 9336 SAMN36690521 SRR25394970 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2560__bin.1 MASTER_WP4_CSIC_2__P2560__bin.1 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium sp SPG F1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-29__bin.16 93.7 0.1 1005 11318524 36.45 17303 SAMN36690521 SRR25394970 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-29__bin.7 94.7 0.8 7237 36309933 35.96 6212 SAMN36690521 SRR25394970 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2217_73323__bin.9 MASTER_WP4_CSIC_1__P2217_73323__bin.9 Mucoromycota;Mucoromycetes;Mucorales;Mucoraceae;unknown unknown cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-30__bin.9 93.60741971 1.744186047 406 3993266 62.95 15954 SAMN36690522 SRR25394969 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 AlvarezOrdonezA_xxxx__Q07-30__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-30__bin.30 89.10575858 1.453488372 331 3194727 62.37 15264 SAMN36690522 SRR25394969 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q03-30__bin.5 AlvarezOrdonezA_xxxx__Q07-30__bin.30 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-30__bin.32 96.30630631 1.081081081 258 3312388 71 21807 SAMN36690522 SRR25394969 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q07-29__bin.1 AlvarezOrdonezA_xxxx__Q07-29__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Dermatophilaceae;Janibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-30__bin.12 97.2972973 0.540540541 201 3867443 68.79 36492 SAMN36690522 SRR25394969 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q07-30__bin.12 AlvarezOrdonezA_xxxx__Q07-30__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Dermatophilaceae;Demetria NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-30__bin.20 81.92567497 4.951690821 997 5407372 63.39 6947 SAMN36690522 SRR25394969 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q07-29__bin.11 AlvarezOrdonezA_xxxx__Q07-29__bin.11 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Williamsia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-30__bin.8 96.31868132 2.756410256 855 6899186 70.14 11811 SAMN36690522 SRR25394969 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q07-29__bin.13 AlvarezOrdonezA_xxxx__Q07-29__bin.13 Actinomycetota;Actinomycetes;Streptosporangiales;Streptosporangiaceae;Murinocardiopsis NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-30__bin.14 98.34455668 2.946127946 284 3663785 64.44 21307 SAMN36690522 SRR25394969 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q07-30__bin.14 AlvarezOrdonezA_xxxx__Q07-30__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-30__bin.31 84.30105925 2.229267311 961 4837641 63.58 6120 SAMN36690522 SRR25394969 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q07-30__bin.31 AlvarezOrdonezA_xxxx__Q07-30__bin.31 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Williamsia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-30__bin.17 87.2 0.2 3528 29816331 48.65 10721 SAMN36690522 SRR25394969 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2560__bin.1 MASTER_WP4_CSIC_2__P2560__bin.1 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium sp SPG F1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-30__bin.18 92.8 1 7605 32576679 36.39 5102 SAMN36690522 SRR25394969 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2217_73323__bin.9 MASTER_WP4_CSIC_1__P2217_73323__bin.9 Mucoromycota;Mucoromycetes;Mucorales;Mucoraceae;unknown unknown cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q07-30__bin.27 89.1 0.2 1410 10878189 36.58 10794 SAMN36690522 SRR25394969 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-23__bin.2 62.94895121 1.841810967 500 2564601 49.51 7096 SAMN36690206 SRR25395410 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811283__bin.7 AlvarezOrdonezA_xxxx__Q08-23__bin.2 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia alvei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-23__bin.4 55.17241379 0 209 1620970 34.75 13090 SAMN36690206 SRR25395410 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_411 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-23__bin.1 86.19218297 0 111 1526090 37.84 24431 SAMN36690206 SRR25395410 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-23__bin.6 94.68600541 0.562140431 202 1508341 39.33 11808 SAMN36690206 SRR25395410 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-23__bin.7 87.32865154 2.902260217 836 4511091 56.54 7218 SAMN36690206 SRR25395410 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q02-30__bin.22 AlvarezOrdonezA_xxxx__Q02-30__bin.22 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella ornithinolytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-23__bin.3 97.08994709 0.132275132 108 1652073 39.32 26206 SAMN36690206 SRR25395410 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-24__bin.4 50.04663613 1.576587302 517 1890465 49.57 4139 SAMN36690207 SRR25395409 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811283__bin.7 AlvarezOrdonezA_xxxx__Q08-23__bin.2 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia alvei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-24__bin.8 83.41061828 2.064393939 376 2540224 34.61 12164 SAMN36690207 SRR25395409 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_411 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-24__bin.9 85.18518519 0 70 1458317 37.88 41069 SAMN36690207 SRR25395409 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-24__bin.7 90.61546227 1.263949539 248 1445619 39.3 8750 SAMN36690207 SRR25395409 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-24__bin.1 95.50811252 2.543015434 490 5197077 56.23 17434 SAMN36690207 SRR25395409 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q02-30__bin.22 AlvarezOrdonezA_xxxx__Q02-30__bin.22 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella ornithinolytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-24__bin.3 95.94356261 0 103 1636692 39.35 28454 SAMN36690207 SRR25395409 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-25__bin.16 93.06889859 0.110903168 166 1485998 39.35 13835 SAMN36690208 SRR25395408 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-25__bin.11 87.26226551 3.333333333 316 1696297 64.06 7717 SAMN36690208 SRR25395408 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_296__bin.3 CM_UNINA_FFOOD__FFOOD_296__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-25__bin.18 98.77300613 1.073619632 73 1834427 38.92 50190 SAMN36690208 SRR25395408 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2137_73322__bin.20 MASTER_WP4_CSIC_1__P2137_73322__bin.20 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella thailandensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-25__bin.6 71.46691969 0.709838107 505 1709254 40.21 3782 SAMN36690208 SRR25395408 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MagliuloR_2024__SRR28235359__bin.3 AlvarezOrdonezA_xxxx__Q08-25__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-25__bin.15 78.27586207 0 577 2699844 61.5 5682 SAMN36690208 SRR25395408 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic AlvarezOrdonezA_xxxx__Q08-25__bin.15 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-25__bin.7 55.44752115 1.211453744 465 1482667 56.2 3378 SAMN36690208 SRR25395408 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 AlvarezOrdonezA_xxxx__Q08-25__bin.7 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-25__bin.9 76.15233128 1.772764491 737 2738390 53.33 4070 SAMN36690208 SRR25395408 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-29__bin.9 AlvarezOrdonezA_xxxx__Q08-25__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella sp030440445 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-25__bin.1 96.22093023 2.034883721 607 4037124 63.58 9771 SAMN36690208 SRR25395408 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_90__bin.4 AlvarezOrdonezA_xxxx__Q08-25__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sandarakinum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-26__bin.4 51.48550725 0.03030303 81 2020695 49.44 32250 SAMN36690209 SRR25395407 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811283__bin.7 AlvarezOrdonezA_xxxx__Q08-23__bin.2 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia alvei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-26__bin.12 96.14507521 0.914604561 194 1560133 39.24 12409 SAMN36690209 SRR25395407 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-26__bin.3 70.31716083 2.248427673 550 1626342 36.55 3009 SAMN36690209 SRR25395407 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 AlvarezOrdonezA_xxxx__Q08-26__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-26__bin.10 96.59307359 3.121212121 223 1855772 64.06 14001 SAMN36690209 SRR25395407 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_296__bin.3 CM_UNINA_FFOOD__FFOOD_296__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-26__bin.9 97.62693157 2.207505519 340 2408918 35.95 10345 SAMN36690209 SRR25395407 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 AlvarezOrdonezA_xxxx__Q08-26__bin.9 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-26__bin.5 98.77300613 1.073619632 38 1850711 38.95 92689 SAMN36690209 SRR25395407 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2137_73322__bin.20 MASTER_WP4_CSIC_1__P2137_73322__bin.20 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella thailandensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-26__bin.2 58.62068966 0 484 2029778 39.64 4999 SAMN36690209 SRR25395407 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MagliuloR_2024__SRR28235359__bin.3 AlvarezOrdonezA_xxxx__Q08-25__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-26__bin.13 93.55037443 3.082319135 523 3047481 61.41 7765 SAMN36690209 SRR25395407 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic AlvarezOrdonezA_xxxx__Q08-26__bin.13 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-27__bin.1 98.94179894 0.987085396 50 1675604 37.81 85908 SAMN36690523 SRR25394967 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-27__bin.5 84.98158135 1.918278228 231 1335084 39.44 7515 SAMN36690523 SRR25394967 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-27__bin.2 93.47826087 0.27173913 134 2377145 46.72 26918 SAMN36690523 SRR25394967 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-27__bin.4 97.88359788 0.651988394 120 1689393 39.29 22846 SAMN36690523 SRR25394967 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-28__bin.10 98.94179894 0.193434602 55 1701375 37.83 85833 SAMN36690524 SRR25394966 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-28__bin.2 81.50521983 1.055312955 235 1339602 39.55 8110 SAMN36690524 SRR25394966 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-28__bin.4 89.67391304 0 92 2286422 46.72 43605 SAMN36690524 SRR25394966 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-28__bin.6 78.46248196 3.474747475 383 1357059 64.33 4074 SAMN36690524 SRR25394966 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_296__bin.3 AlvarezOrdonezA_xxxx__Q08-28__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-28__bin.7 99.47089947 0.122887865 108 1667219 39.28 28519 SAMN36690524 SRR25394966 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-29__bin.7 82.85965551 0.655021834 124 1233929 39.75 13175 SAMN36690525 SRR25394965 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-29__bin.12 73.39424142 0 408 2013814 63.5 6115 SAMN36690525 SRR25394965 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 WolfeBE_2014__491_Bayley__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-29__bin.26 82.43585367 0.176366843 239 1304705 39.73 6916 SAMN36690525 SRR25394965 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-29__bin.24 97.74774775 0 125 2962471 69.25 36532 SAMN36690525 SRR25394965 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_2__P2570__bin.32 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-29__bin.3 93.56231231 0.852638353 302 2825424 67.8 13330 SAMN36690525 SRR25394965 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 AlvarezOrdonezA_xxxx__R03-18__bin.3 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-29__bin.27 90.8388521 1.655629139 255 2328546 65.69 11849 SAMN36690525 SRR25394965 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2608__bin.7 AlvarezOrdonezA_xxxx__Q08-29__bin.27 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-29__bin.6 98.12312312 1.576576577 117 3383999 67.48 43810 SAMN36690525 SRR25394965 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS11-30__bin.13 MASTER_WP4_TEAGASC_1__TGS11-30__bin.13 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-29__bin.9 93.5 0.1 1027 29868950 48.44 42328 SAMN36690525 SRR25394965 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2560__bin.1 AlvarezOrdonezA_xxxx__Q08-29__bin.9 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium sp SPG F1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-30__bin.8 81.21227822 1.547218214 293 1275018 38.18 4968 SAMN36690526 SRR25394964 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic AlvarezOrdonezA_xxxx__Q08-30__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-30__bin.4 79.56349206 0.573144105 137 1263380 39.67 12887 SAMN36690526 SRR25394964 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-30__bin.10 75.23532669 0.348837209 496 2334582 63.46 5660 SAMN36690526 SRR25394964 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 WolfeBE_2014__491_Bayley__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-30__bin.18 93.30904908 1.073619632 32 1578688 38.9 84819 SAMN36690526 SRR25394964 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2137_73322__bin.20 MASTER_WP4_CSIC_1__P2137_73322__bin.20 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella thailandensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-30__bin.24 73.68421053 0 115 1558495 36.69 19404 SAMN36690526 SRR25394964 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_012396435.1_ASM1239643v1_genomic GCF_012396435.1_ASM1239643v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella hellenica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-30__bin.23 84.3598234 3.841059603 456 2049522 65.8 5728 SAMN36690526 SRR25394964 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2608__bin.7 AlvarezOrdonezA_xxxx__Q08-30__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-30__bin.13 94.98712999 2.512333762 443 3392577 67.36 10935 SAMN36690526 SRR25394964 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS11-30__bin.13 MASTER_WP4_TEAGASC_1__TGS11-30__bin.13 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-30__bin.5 90.47180836 1.533742331 94 1662876 36.38 28763 SAMN36690526 SRR25394964 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_010306265.1_ASM1030626v1_genomic MASTER_WP4_UNINA_1__SS007_71775__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella sagaensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-30__bin.19 58 0.2 3531 21524396 48.41 6907 SAMN36690526 SRR25394964 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2560__bin.1 AlvarezOrdonezA_xxxx__Q08-29__bin.9 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium sp SPG F1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q08-30__bin.7 71.8 0.4 1301 10392221 36.2 10566 SAMN36690526 SRR25394964 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032089__bin.1 87.8631439 1.309974747 267 1930784 34.78 10500 ERS2032089 ERR2212267 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032089__bin.4 68.96551724 0 154 1389880 36.37 12080 ERS2032089 ERR2212267 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032089__bin.5 52.05479452 0 25 1628963 39.4 94724 ERS2032089 ERR2212267 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_312 MAG_312 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter baumannii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032090__bin.12 92.11706228 1.194968553 305 1972013 34.98 10065 ERS2032090 ERR2212268 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032090__bin.3 57.97910001 0.451237263 118 879512 39.83 9938 ERS2032090 ERR2212268 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032090__bin.1 56.89655172 0 128 984839 36.16 11628 ERS2032090 ERR2212268 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032090__bin.4 78.69333748 0.764840183 631 2551836 39.39 4360 ERS2032090 ERR2212268 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_312 MAG_312 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter baumannii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032091__bin.1 93.96226415 2.51572327 244 2118674 35 15901 ERS2032091 ERR2212269 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032091__bin.5 84.9400318 1.130519165 235 1339703 39.43 7129 ERS2032091 ERR2212269 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032091__bin.3 73.12599681 0.142401458 138 1310278 36.16 14329 ERS2032091 ERR2212269 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032091__bin.2 71.22102878 0.684931507 625 2462206 38.33 4373 ERS2032091 ERR2212269 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_312 BertuzziAS_2018__ERS2032091__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter baumannii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032092__bin.4 53.44827586 1.724137931 164 1453486 35.09 19287 ERS2032092 ERR2212270 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032092__bin.10 63.76490261 0.930893464 170 975745 39.81 7575 ERS2032092 ERR2212270 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032092__bin.2 98.80952381 0.108225108 197 1867941 36.21 14294 ERS2032092 ERR2212270 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032092__bin.5 98.43637993 0.555555556 307 2640483 32.94 16509 ERS2032092 ERR2212270 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032093__bin.6 95.14601662 2.083333333 290 2139135 34.78 11892 ERS2032093 ERR2212271 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032093__bin.2 98.16017316 0 194 1766155 36.5 13477 ERS2032093 ERR2212271 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032093__bin.5 67.38476003 0.95890411 540 2203051 39.11 4760 ERS2032093 ERR2212271 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_312 MAG_312 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter baumannii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032094__bin.5 90.40637046 0.578616352 272 1869990 34.93 12233 ERS2032094 ERR2212272 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032094__bin.3 62.93103448 0 139 1126739 39.73 9706 ERS2032094 ERR2212272 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032094__bin.4 89.1011339 1.141304348 197 2615025 46.48 19540 ERS2032094 ERR2212272 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032094__bin.6 58.62068966 0 97 854205 36.55 12106 ERS2032094 ERR2212272 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032094__bin.1 90.45614659 0.388127854 477 2943507 39.19 8478 ERS2032094 ERR2212272 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_312 MAG_312 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter baumannii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032095__bin.5 93.98652291 1.018867925 177 2039240 35.08 21308 ERS2032095 ERR2212273 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032095__bin.6 94.26406926 0 166 1629919 36.55 14422 ERS2032095 ERR2212273 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032095__bin.4 89.35185185 0 405 2305307 33.09 7689 ERS2032095 ERR2212273 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032096__bin.3 93.61026577 1.886792453 252 2020166 34.97 12682 ERS2032096 ERR2212274 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032096__bin.6 84.29399569 1.197754211 185 1310704 39.5 8685 ERS2032096 ERR2212274 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032096__bin.2 57.93460925 0 108 1018581 36.85 13659 ERS2032096 ERR2212274 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746829__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032097__bin.4 75.6918239 0.424528302 187 1543355 35.33 15280 ERS2032097 ERR2212275 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032097__bin.3 50.92751438 1.018922853 141 784047 39.26 6661 ERS2032097 ERR2212275 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. Wy2_bin.circ.1 BertuzziAS_2018__ERS2032097__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032097__bin.7 60.34482759 0 127 1218608 36.27 12566 ERS2032097 ERR2212275 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032097__bin.8 90.99329894 2.254185693 473 2993961 39.06 8396 ERS2032097 ERR2212275 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_312 MAG_312 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter baumannii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032098__bin.4 93.70709793 0.314465409 275 2046060 35.09 13341 ERS2032098 ERR2212276 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032098__bin.3 52.79112082 0.58224163 114 875663 39.55 9101 ERS2032098 ERR2212276 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032098__bin.1 60.67840293 0.668642951 433 1688019 46.55 4398 ERS2032098 ERR2212276 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746951__bin.4 BertuzziAS_2018__ERS2032098__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032098__bin.6 50 0 94 857847 35.9 13245 ERS2032098 ERR2212276 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032099__bin.5 96.12598904 0.613207547 222 2128926 34.94 16618 ERS2032099 ERR2212277 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032099__bin.2 50.86206897 0 117 687211 39.44 7125 ERS2032099 ERR2212277 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. Wy2_bin.circ.1 BertuzziAS_2018__ERS2032119__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032099__bin.4 95 2.813852814 196 1616256 36.54 12041 ERS2032099 ERR2212277 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032099__bin.6 80.07915173 0.666666667 489 2038509 33.39 5117 ERS2032099 ERR2212277 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032100__bin.3 94.85595455 1.254716981 277 2216330 34.88 14590 ERS2032100 ERR2212278 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032100__bin.4 85.67035766 1.142649199 232 1411150 39.45 8545 ERS2032100 ERR2212278 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032100__bin.5 58.62068966 0 152 1131403 35.68 11609 ERS2032100 ERR2212278 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032101__bin.6 94.29600325 2.5090282 303 2268379 34.68 11921 ERS2032101 ERR2212279 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032101__bin.3 51.08338532 0.172852984 150 798281 39.97 6077 ERS2032101 ERR2212279 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. Wy2_bin.circ.1 BertuzziAS_2018__ERS2032109__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032101__bin.1 76.99134199 0.12987013 211 1481753 36.27 10334 ERS2032101 ERR2212279 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032101__bin.4 76.25570776 0 246 2636356 39.16 16135 ERS2032101 ERR2212279 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_312 MAG_312 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter baumannii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032102__bin.8 95.7151552 1.226415094 207 2111036 34.94 18553 ERS2032102 ERR2212280 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032102__bin.3 62.93103448 0 166 1084851 39.62 9154 ERS2032102 ERR2212280 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. Wy2_bin.circ.1 BertuzziAS_2018__ERS2032119__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032102__bin.2 93.83116883 0 187 1664290 36.36 12567 ERS2032102 ERR2212280 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032102__bin.4 97.77777778 0 25 2178600 33.03 242386 ERS2032102 ERR2212280 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032102__bin.6 97.7 0.1 477 11729207 36.18 42447 ERS2032102 ERR2212280 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032103__bin.10 93.12544433 1.638257576 280 2364781 34.39 16117 ERS2032103 ERR2212281 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032103__bin.2 97.51082251 0 174 1685833 36.52 14319 ERS2032103 ERR2212281 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032103__bin.3 97.90301442 0 80 3421491 59.29 65353 ERS2032103 ERR2212281 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_323 BertuzziAS_2018__ERS2032111__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032103__bin.5 99.44444444 1.157407407 36 2513879 33 168402 ERS2032103 ERR2212281 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032103__bin.7 98.8 0.1 350 11727536 36.25 80063 ERS2032103 ERR2212281 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032104__bin.11 98.86792453 0.880503145 200 2276363 35.03 25287 ERS2032104 ERR2212282 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032104__bin.3 89.09799502 4.32860262 285 1533714 39.25 6935 ERS2032104 ERR2212282 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. Wy2_bin.circ.1 BertuzziAS_2018__ERS2032119__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032104__bin.7 74.70573201 0.378528967 348 1333715 36.59 4392 ERS2032104 ERR2212282 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746979__bin.3 BertuzziAS_2018__ERS2032104__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032104__bin.5 96.32132132 0.45045045 353 2972060 67.71 11829 ERS2032104 ERR2212282 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FalardeauJ_2023__SRR20811223__bin.4 MAG_317 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032104__bin.2 95.60943644 0 80 3331555 59.31 62191 ERS2032104 ERR2212282 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_323 BertuzziAS_2018__ERS2032111__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032104__bin.9 99.44444444 0.555555556 127 2612636 32.85 40842 ERS2032104 ERR2212282 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032104__bin.6 63.36996337 0 28 1598994 45.28 90398 ERS2032104 ERR2212282 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. 180 MacoriG_2019__CS_R32__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter namhaensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032104__bin.4 96.8 0.1 812 11779700 36.25 25206 ERS2032104 ERR2212282 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032105__bin.2 95.53702346 2.97979798 284 2250068 34.75 14760 ERS2032105 ERR2212283 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032105__bin.6 63.17669173 0 195 1039097 36.34 7216 ERS2032105 ERR2212283 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032106__bin.6 99.1202346 1.925505051 176 2349974 34.89 28649 ERS2032106 ERR2212284 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032106__bin.7 89.89299577 1.085464754 182 1424611 39.48 11096 ERS2032106 ERR2212284 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032106__bin.2 88.86876651 0 277 1453743 36.45 6720 ERS2032106 ERR2212284 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746829__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032106__bin.4 96.98558322 0 80 3376704 59.33 69346 ERS2032106 ERR2212284 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_323 BertuzziAS_2018__ERS2032111__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032106__bin.8 99.44444444 0.277777778 23 2507151 33.01 310252 ERS2032106 ERR2212284 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032106__bin.5 98.5 0.1 367 11715522 36.26 67828 ERS2032106 ERR2212284 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032107__bin.9 96.0052749 0.716981132 276 2202043 34.93 15342 ERS2032107 ERR2212285 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032107__bin.8 95.23809524 0 179 1652585 36.51 14165 ERS2032107 ERR2212285 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032107__bin.3 97.40990991 0.825825826 225 3038273 67.74 19243 ERS2032107 ERR2212285 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FalardeauJ_2023__SRR20811223__bin.4 MAG_317 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032107__bin.6 97.90301442 0 83 3444866 59.26 62692 ERS2032107 ERR2212285 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_323 BertuzziAS_2018__ERS2032111__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032107__bin.10 99.16666667 1.666666667 120 2399356 33.18 33556 ERS2032107 ERR2212285 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032107__bin.2 78.59357697 1.162790698 787 3075185 65.7 4566 ERS2032107 ERR2212285 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. BertuzziAS_2018__ERS2032125__bin.2 BertuzziAS_2018__ERS2032125__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium linens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032107__bin.7 97.9 0.1 696 12183962 36.18 30415 ERS2032107 ERR2212285 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032108__bin.6 82.30098832 1.320754717 518 1925123 35.12 4210 ERS2032108 ERR2212286 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 BertuzziAS_2018__ERS2032108__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032108__bin.5 93.68979702 0.697303667 208 1628267 39.07 10715 ERS2032108 ERR2212286 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032108__bin.2 97.90301442 0 81 3444378 59.29 65353 ERS2032108 ERR2212286 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_323 BertuzziAS_2018__ERS2032111__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032108__bin.4 99.44444444 0 56 2464267 33.08 80836 ERS2032108 ERR2212286 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032109__bin.8 94.54108338 2.672955975 271 2186127 35.01 13387 ERS2032109 ERR2212287 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032109__bin.7 70.90055161 1.245061343 180 1084667 39.75 7686 ERS2032109 ERR2212287 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. Wy2_bin.circ.1 BertuzziAS_2018__ERS2032109__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032109__bin.3 53.44827586 0 109 960060 35.66 11360 ERS2032109 ERR2212287 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032109__bin.5 88.4563838 0.639269406 557 2936178 39.44 6986 ERS2032109 ERR2212287 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_312 MAG_312 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter baumannii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032110__bin.6 96.64150943 1.902515723 200 2230014 35.06 20859 ERS2032110 ERR2212288 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032110__bin.3 86.06709642 2.449053857 252 1418094 39.35 7016 ERS2032110 ERR2212288 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. Wy2_bin.circ.1 BertuzziAS_2018__ERS2032119__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032110__bin.7 92.43119266 0 79 3275426 59.32 62692 ERS2032110 ERR2212288 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_323 BertuzziAS_2018__ERS2032111__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032110__bin.1 99.44444444 0 28 2452198 33.06 216688 ERS2032110 ERR2212288 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032110__bin.4 98.3 0.1 321 11662755 36.27 92616 ERS2032110 ERR2212288 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032111__bin.9 95.50091296 2.248427673 288 2453668 34.54 18255 ERS2032111 ERR2212289 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032111__bin.5 86.46260819 2.025629029 251 1393107 39.38 6689 ERS2032111 ERR2212289 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032111__bin.8 94.58874459 0 212 1705170 36.53 12452 ERS2032111 ERR2212289 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032111__bin.1 97.90301442 0 80 3429472 59.28 70264 ERS2032111 ERR2212289 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_323 BertuzziAS_2018__ERS2032111__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032111__bin.10 99.44444444 0 30 2484648 33.07 269525 ERS2032111 ERR2212289 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032111__bin.4 98.4 0.1 442 11864584 36.26 55857 ERS2032111 ERR2212289 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032112__bin.7 98.23899371 0.943396226 196 2361107 34.9 25621 ERS2032112 ERR2212290 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032112__bin.5 78.5261841 0.735080058 215 1264214 39.68 8251 ERS2032112 ERR2212290 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032112__bin.2 59.22488852 0.108225108 286 950419 37.02 3491 ERS2032112 ERR2212290 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746979__bin.3 MAG_101 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032112__bin.8 97.2972973 0.45045045 224 3019308 67.67 19769 ERS2032112 ERR2212290 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FalardeauJ_2023__SRR20811223__bin.4 MAG_317 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032112__bin.3 97.90301442 0 83 3411156 59.27 65353 ERS2032112 ERR2212290 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_323 BertuzziAS_2018__ERS2032111__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032112__bin.9 99.44444444 0.462962963 111 2417735 33.17 39790 ERS2032112 ERR2212290 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032112__bin.6 97.8021978 0.274725275 170 2697222 45.15 24309 ERS2032112 ERR2212290 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. 180 MacoriG_2019__CS_R32__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter namhaensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032112__bin.10 90.50387597 0.968992248 582 3351911 65.48 7380 ERS2032112 ERR2212290 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. BertuzziAS_2018__ERS2032125__bin.2 BertuzziAS_2018__ERS2032125__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium linens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032112__bin.12 62.5 0.2 2578 9367307 36.31 4108 ERS2032112 ERR2212290 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032113__bin.7 90.01014405 0.503144654 251 1861991 35.15 14286 ERS2032113 ERR2212291 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032113__bin.9 53.44827586 0 118 1047427 36.24 11726 ERS2032113 ERR2212291 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032113__bin.3 60.54794521 0 39 1735423 39.46 60324 ERS2032113 ERR2212291 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_312 MAG_312 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter baumannii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032114__bin.2 91.33089876 2.578616352 305 2271057 34.54 12123 ERS2032114 ERR2212292 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032114__bin.1 58.33142719 1.171761281 182 974522 39.72 6467 ERS2032114 ERR2212292 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. Wy2_bin.circ.1 BertuzziAS_2018__ERS2032119__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032114__bin.9 97.6744186 0 99 3946857 63.09 58023 ERS2032114 ERR2212292 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. We6_bin.circ.9 MAG_320 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032114__bin.6 99.44444444 1.944444444 22 2734371 32.68 219849 ERS2032114 ERR2212292 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032114__bin.8 55.17241379 0 135 1204051 35.98 12034 ERS2032114 ERR2212292 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032115__bin.4 96.66666667 0.462713387 364 2424847 34.93 10102 ERS2032115 ERR2212293 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032115__bin.2 92.36135427 1.484716157 198 1563544 39.28 10919 ERS2032115 ERR2212293 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032115__bin.1 100 0 71 3999180 63.01 98394 ERS2032115 ERR2212293 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. We6_bin.circ.9 MAG_320 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032115__bin.3 99.44444444 1.944444444 31 2830419 32.58 346324 ERS2032115 ERR2212293 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032116__bin.5 94.49685535 2.119496855 301 2356130 34.73 13407 ERS2032116 ERR2212294 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032116__bin.9 77.9482914 1.528904138 247 1239790 39.57 6170 ERS2032116 ERR2212294 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. Wy2_bin.circ.1 BertuzziAS_2018__ERS2032119__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032116__bin.7 97.6744186 0 63 3862534 63.13 100356 ERS2032116 ERR2212294 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. We6_bin.circ.9 MAG_320 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032116__bin.1 96.90082645 0.162337662 207 1724182 36.62 10827 ERS2032116 ERR2212294 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032116__bin.11 99.44444444 1.944444444 40 2813317 32.56 346324 ERS2032116 ERR2212294 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032116__bin.10 87.92267752 1.968864469 285 2957561 43.06 15045 ERS2032116 ERR2212294 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MASTER_WP4_TEAGASC_1__TGS01-22__bin.24 BertuzziAS_2018__ERS2032116__bin.10 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter aquimaris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032116__bin.6 95.15101714 2.169757326 245 3039554 43.12 19181 ERS2032116 ERR2212294 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. 182 BertuzziAS_2018__ERS2032120__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032116__bin.4 96.60469667 0.543378995 390 3260580 39.4 12734 ERS2032116 ERR2212294 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_312 MAG_312 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter baumannii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032117__bin.4 90.31203084 2.012578616 260 1999488 35.05 12817 ERS2032117 ERR2212295 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032117__bin.6 53.44827586 0 103 910496 36.16 13251 ERS2032117 ERR2212295 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032117__bin.8 50.4109589 0 36 1465480 39.54 55924 ERS2032117 ERR2212295 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_312 MAG_312 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter baumannii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032118__bin.4 98.6163522 2.48427673 273 2393396 34.8 14859 ERS2032118 ERR2212296 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032118__bin.1 90.253691 0.959399043 171 1465845 39.54 11198 ERS2032118 ERR2212296 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032118__bin.3 99.41860465 0 320 3926772 63.07 18613 ERS2032118 ERR2212296 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. We6_bin.circ.9 MAG_320 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032118__bin.6 96.66666667 1.388888889 96 2738777 32.68 45803 ERS2032118 ERR2212296 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032118__bin.5 70.1 0 2877 9927318 36.15 3602 ERS2032118 ERR2212296 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MASTER_WP4_UNINA_1__GO005_71775__bin.6 BertuzziAS_2018__ERS2032118__bin.5 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032119__bin.7 95.3038449 1.325757576 174 2133302 35.09 23766 ERS2032119 ERR2212297 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032119__bin.1 84.04812214 0.915211063 219 1351704 39.39 7359 ERS2032119 ERR2212297 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. Wy2_bin.circ.1 BertuzziAS_2018__ERS2032119__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032119__bin.2 97.6744186 0 68 3888354 63.15 100356 ERS2032119 ERR2212297 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. We6_bin.circ.9 MAG_320 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032119__bin.3 99.44444444 1.944444444 25 2746422 32.65 219512 ERS2032119 ERR2212297 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032119__bin.4 77.25304781 1.923076923 424 2729928 43.02 8228 ERS2032119 ERR2212297 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MASTER_WP4_TEAGASC_1__TGS01-22__bin.24 BertuzziAS_2018__ERS2032116__bin.10 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter aquimaris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032119__bin.5 98.63945578 1.817193223 205 3079141 43.07 24265 ERS2032119 ERR2212297 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. 182 BertuzziAS_2018__ERS2032120__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032119__bin.9 75.8 2.4 3303 12489751 36.04 4053 ERS2032119 ERR2212297 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MASTER_WP4_UNINA_1__GO005_71775__bin.6 BertuzziAS_2018__ERS2032119__bin.9 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032120__bin.1 99.43181818 0.978535354 181 2527859 34.89 30180 ERS2032120 ERR2212298 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032120__bin.8 94.44172217 1.050460941 212 1599846 39.27 10524 ERS2032120 ERR2212298 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032120__bin.7 100 0 91 4004407 63.01 68967 ERS2032120 ERR2212298 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. We6_bin.circ.9 MAG_320 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032120__bin.3 99.44444444 1.944444444 29 2746743 32.68 193758 ERS2032120 ERR2212298 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032120__bin.4 100 0.618131868 49 3290693 42.88 129575 ERS2032120 ERR2212298 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. 182 BertuzziAS_2018__ERS2032120__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032120__bin.6 71.6 0.3 2857 9706529 36.03 3678 ERS2032120 ERR2212298 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MASTER_WP4_UNINA_1__GO005_71775__bin.6 BertuzziAS_2018__ERS2032120__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032121__bin.2 92.58534831 2.578616352 308 2157179 34.72 12295 ERS2032121 ERR2212299 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032121__bin.5 53.44827586 0 101 944994 35.7 14294 ERS2032121 ERR2212299 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032122__bin.5 93.94096166 1.698113208 274 2146633 34.73 12022 ERS2032122 ERR2212300 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032122__bin.12 99.41860465 0 58 3864887 63.12 99303 ERS2032122 ERR2212300 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. We6_bin.circ.9 MAG_320 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032122__bin.2 86.58008658 0.324675325 144 1433618 36.45 15784 ERS2032122 ERR2212300 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032122__bin.10 71.11111111 0 9 1419149 32.47 967402 ERS2032122 ERR2212300 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032122__bin.13 94.31929182 3.330263487 410 3119642 42.92 10404 ERS2032122 ERR2212300 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. 182 BertuzziAS_2018__ERS2032120__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032123__bin.6 94.71698113 2.7008521 299 2400354 34.55 15085 ERS2032123 ERR2212301 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032123__bin.1 79.3470576 1.308224163 238 1325361 39.56 6534 ERS2032123 ERR2212301 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. Wy2_bin.circ.1 BertuzziAS_2018__ERS2032119__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032123__bin.7 97.6744186 0.581395349 75 3995193 63.15 79886 ERS2032123 ERR2212301 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. We6_bin.circ.9 MAG_320 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032123__bin.8 96.65092483 0.850340136 284 1703663 36.45 7662 ERS2032123 ERR2212301 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746829__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032123__bin.9 99.44444444 1.944444444 22 2738801 32.65 219617 ERS2032123 ERR2212301 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032123__bin.5 99.35897436 1.507173382 140 3290001 42.87 37372 ERS2032123 ERR2212301 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. 182 BertuzziAS_2018__ERS2032120__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032123__bin.3 72.8 3.4 3397 12648989 35.98 4013 ERS2032123 ERR2212301 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MASTER_WP4_UNINA_1__GO005_71775__bin.6 BertuzziAS_2018__ERS2032123__bin.3 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032124__bin.2 97.67295597 1.886792453 233 2220771 34.97 17827 ERS2032124 ERR2212302 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032124__bin.3 72.4137931 1.724137931 238 1212223 39.43 6535 ERS2032124 ERR2212302 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. Wy2_bin.circ.1 BertuzziAS_2018__ERS2032119__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032124__bin.1 100 0 64 3894519 63.15 85330 ERS2032124 ERR2212302 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. We6_bin.circ.9 MAG_320 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032124__bin.6 99.44444444 1.944444444 24 2745877 32.66 219850 ERS2032124 ERR2212302 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032124__bin.8 77.7 1.2 3117 11851445 36.08 4063 ERS2032124 ERR2212302 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MASTER_WP4_UNINA_1__GO005_71775__bin.6 BertuzziAS_2018__ERS2032124__bin.8 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032125__bin.2 99.41860465 0 113 3684395 65.11 53286 ERS2032125 ERR2212303 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. BertuzziAS_2018__ERS2032125__bin.2 BertuzziAS_2018__ERS2032125__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium linens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032125__bin.1 95.05813953 1.162790698 112 3628528 68.32 50072 ERS2032125 ERR2212303 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. BertuzziAS_2018__ERS2032127__bin.3 BertuzziAS_2018__ERS2032127__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032125__bin.3 82.7 0.2 2033 11122045 44.57 7371 ERS2032125 ERR2212303 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. BertuzziAS_2018__ERS2032125__bin.3 BertuzziAS_2018__ERS2032125__bin.3 Ascomycota;Saccharomycetes;Saccharomycetales;Phaffomycetaceae;Cyberlindnera Cyberlindnera jadinii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032126__bin.2 98.8372093 2.034883721 167 3563404 65.22 31944 ERS2032126 ERR2212304 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. BertuzziAS_2018__ERS2032125__bin.2 BertuzziAS_2018__ERS2032125__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium linens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032126__bin.3 95.34883721 0.872093023 128 3721938 68.15 47452 ERS2032126 ERR2212304 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. BertuzziAS_2018__ERS2032127__bin.3 BertuzziAS_2018__ERS2032127__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032127__bin.2 98.53959025 1.220930233 192 3612398 65.19 26852 ERS2032127 ERR2212305 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. BertuzziAS_2018__ERS2032125__bin.2 BertuzziAS_2018__ERS2032125__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium linens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032127__bin.3 99.06976744 0.581395349 150 3807912 68.07 43213 ERS2032127 ERR2212305 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. BertuzziAS_2018__ERS2032127__bin.3 BertuzziAS_2018__ERS2032127__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032128__bin.2 94.38619484 0 83 3214268 59.74 54766 ERS2032128 ERR2212306 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_323 MAG_323 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032129__bin.2 85.83194906 1.744186047 668 3639458 62.91 7078 ERS2032129 ERR2212307 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. We6_bin.circ.9 MAG_320 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032129__bin.3 95.30362604 0.688073394 93 3279329 59.69 54737 ERS2032129 ERR2212307 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_323 MAG_323 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032129__bin.5 65.6 0.2 2730 8881345 36.56 3451 ERS2032129 ERR2212307 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MASTER_WP4_UNINA_1__GO005_71775__bin.6 BertuzziAS_2018__ERS2032129__bin.5 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032130__bin.2 67.15116279 0 918 2787764 62.7 3247 ERS2032130 ERR2212308 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. We6_bin.circ.9 BertuzziAS_2018__ERS2032130__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032130__bin.4 94.15683705 0 86 3245373 59.78 61342 ERS2032130 ERR2212308 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MAG_323 MAG_323 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months BertuzziAS_2018__ERS2032130__bin.3 53.9 3.5 3773 9610473 37.29 2565 ERS2032130 ERR2212308 Ireland PRJEB15423 ERP017154 NCBI Bertuzzi, A.S., Walsh, A.M., Sheehan, J.J., Cotter, P.D., Crispie, F., McSweeney, P.L.H., Kilcawley, K.N., and Rea, M.C. (2018). Omics-Based Insights into Flavor Development and Microbial Succession within Surface-Ripened Cheese. mSystems 3. 10.1128/mSystems.00211-17. MASTER_WP4_UNINA_1__GO005_71775__bin.6 BertuzziAS_2018__ERS2032130__bin.3 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_223__bin.1 63.24 3.28 478 1693404 46.84 3900 SAMN46068759 SRR31887342 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_223__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_223__bin.2 93.48 1.18 52 1737787 37.6 81679 SAMN46068759 SRR31887342 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 LopezSanchezR_2023__SRR13708565__bin.10 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_223__bin.5 95.17 0.14 72 1602187 50.51 34305 SAMN46068759 SRR31887342 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_62__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_223__bin.6 52.77 0.1 51 878097 39.5 34426 SAMN46068759 SRR31887342 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_226__bin.1 91.43 1.46 35 2554044 37.56 143594 SAMN46068761 SRR31887298 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2235_73323__bin.9 CM_UNINA_FFOOD__FFOOD_226__bin.1 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_226__bin.10 90.74 1.25 396 4329590 50.99 17854 SAMN46068761 SRR31887298 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967688__bin.2 CM_UNINA_FFOOD__FFOOD_226__bin.10 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_226__bin.12 92.54 0.18 95 2035627 35.13 39098 SAMN46068761 SRR31887298 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__O-26.1__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_226__bin.2 88.61 1.1 355 2402597 46.83 9416 SAMN46068761 SRR31887298 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_226__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_226__bin.5 83.19 1.75 35 1860484 37.63 223704 SAMN46068761 SRR31887298 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_104__bin.4 CM_UNINA_FFOOD__FFOOD_226__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus macedonicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_226__bin.6 100 4.65 51 2997294 36.73 154119 SAMN46068761 SRR31887298 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_226__bin.6 CM_UNINA_FFOOD__FFOOD_226__bin.6 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B hirae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_226__bin.7 99.45 1.46 155 2495603 35.95 25369 SAMN46068761 SRR31887298 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF24__bin.1 CM_UNINA_FFOOD__FFOOD_226__bin.7 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus simulans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_226__bin.8 82.88 3.89 445 2408278 45.06 6854 SAMN46068761 SRR31887298 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 CM_UNINA_FFOOD__FFOOD_226__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_230__bin.1 69.2 0.04 52 1229000 39.2 39249 SAMN46068765 SRR31887158 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_230__bin.2 79.2 0.58 391 4504733 59.94 17920 SAMN46068765 SRR31887158 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q04-26__bin.13 CM_UNINA_FFOOD__FFOOD_230__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E haemolytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_230__bin.4 95.95 0.05 147 2578119 38.45 32859 SAMN46068765 SRR31887158 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MagliuloR_2024__SRR28235359__bin.3 MagliuloR_2024__SRR28235392__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_231__bin.3 52.72 0 26 723806 51.07 58830 SAMN46068766 SRR31887147 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_237__bin.13 56.16 0.12 35 911761 51.01 32724 SAMN46068767 SRR31887264 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_237__bin.3 52.97 0.1 37 873412 39.88 36699 SAMN46068767 SRR31887264 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_237__bin.4 87.69 1.54 74 4262150 45.27 113282 SAMN46068767 SRR31887264 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MagliuloR_2024__SRR28235370__bin.7 MagliuloR_2024__SRR28235370__bin.7 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Shewanellaceae;Shewanella Shewanella oncorhynchi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_237__bin.5 80.65 1.55 360 4867227 60.33 19360 SAMN46068767 SRR31887264 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__C02-19__bin.3 CM_UNINA_FFOOD__FFOOD_237__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_238__bin.1 100 0.03 106 2691099 38.55 51132 SAMN46068768 SRR31887253 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MagliuloR_2024__SRR28235359__bin.3 MagliuloR_2024__SRR28235359__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_239__bin.1 86.02 1.11 161 1459315 43.75 12705 SAMN46068769 SRR31887340 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_239__bin.9 53.54 0.03 33 905885 51.18 33210 SAMN46068769 SRR31887340 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_241__bin.12 50.04 0.13 38 847545 39.87 29725 SAMN46068770 SRR31887329 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_241__bin.3 54.65 0.02 19 1435420 38.88 117961 SAMN46068770 SRR31887329 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MagliuloR_2024__SRR28235359__bin.3 CM_UNINA_FFOOD__FFOOD_241__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_243__bin.2 65 0.34 42 1058291 50.69 47466 SAMN46068772 SRR31887307 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_244__bin.1 79.68 4.85 540 2025647 36.62 4361 SAMN46068773 SRR31887232 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_385__bin.9 MagliuloR_2024__SRR28235345__bin.12 Bacteroidota;Bacteroidia;Flavobacteriales;Weeksellaceae;Kaistella Kaistella haifensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_244__bin.12 83.83 0.13 66 1366905 50.85 32724 SAMN46068773 SRR31887232 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_244__bin.9 60.59 0.13 27 1066779 39.29 59656 SAMN46068773 SRR31887232 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_245__bin.2 99.58 0.22 34 1519638 43.71 70836 SAMN46068774 SRR31887221 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_246__bin.5 77.55 0.17 53 1206296 51.01 30045 SAMN46068775 SRR31887210 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_246__bin.6 58.82 0.07 32 1014822 39.37 44946 SAMN46068775 SRR31887210 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_246__bin.8 59.18 2.18 506 1687930 38.61 3611 SAMN46068775 SRR31887210 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MagliuloR_2024__SRR28235359__bin.3 MagliuloR_2024__SRR28235390__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_249__bin.1 85.22 0.28 63 1727752 37.52 72886 SAMN46068778 SRR31887305 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 LopezSanchezR_2023__SRR13708565__bin.10 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_249__bin.2 63.37 1.32 323 1095625 38.1 3733 SAMN46068778 SRR31887305 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic CM_UNINA_FFOOD__FFOOD_249__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_249__bin.3 53.92 1.94 424 1201608 35.48 2956 SAMN46068778 SRR31887305 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 CM_UNINA_FFOOD__FFOOD_249__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_249__bin.4 99.38 0.26 101 2553158 34.88 67482 SAMN46068778 SRR31887305 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_249__bin.5 67.75 0.29 86 1236183 39.51 26606 SAMN46068778 SRR31887305 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_249__bin.6 98 0.06 207 2379552 46.79 16361 SAMN46068778 SRR31887305 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_249__bin.8 81.09 0.2 64 1422538 50.39 33902 SAMN46068778 SRR31887305 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_62__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_250__bin.9 64.78 0.36 24 1121975 39.33 69728 SAMN46068779 SRR31887297 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_251__bin.10 93.91 0.19 288 3968532 62.32 21667 SAMN46068780 SRR31887296 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_251__bin.10 CM_UNINA_FFOOD__FFOOD_251__bin.10 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Aeromonadaceae;Aeromonas Aeromonas caviae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_251__bin.12 95.56 1.23 197 4552609 50.95 36069 SAMN46068780 SRR31887296 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967688__bin.2 CM_UNINA_FFOOD__FFOOD_251__bin.12 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_251__bin.4 54.45 0.08 89 875482 39.55 13440 SAMN46068780 SRR31887296 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_251__bin.9 96.11 1.12 326 2525422 35.02 12348 SAMN46068780 SRR31887296 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 CM_UNINA_FFOOD__FFOOD_251__bin.9 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_252__bin.10 66.8 0.67 65 1408742 35.27 33780 SAMN46068781 SRR31887295 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_252__bin.2 62.14 0.28 41 1083934 50.76 30954 SAMN46068781 SRR31887295 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_253__bin.8 66.74 0.36 46 1159966 50.51 38424 SAMN46068782 SRR31887294 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_254__bin.13 97.87 0.13 247 2635955 38.64 15249 SAMN46068783 SRR31887293 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MagliuloR_2024__SRR28235359__bin.3 MagliuloR_2024__SRR28235359__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_254__bin.6 73.63 0.55 280 1395344 39.97 5975 SAMN46068783 SRR31887293 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_270__bin.3 CM_UNINA_FFOOD__FFOOD_254__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus suis AA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_254__bin.8 99.94 2.03 152 4776194 44.36 76119 SAMN46068783 SRR31887293 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_254__bin.8 CM_UNINA_FFOOD__FFOOD_254__bin.8 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Marinomonadaceae;Marinomonas Marinomonas spartinae A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_256__bin.1 58.86 0.06 58 865394 51.26 21499 SAMN46068785 SRR31887291 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_256__bin.10 60.73 1.49 232 994230 37.8 4961 SAMN46068785 SRR31887291 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 CM_UNINA_FFOOD__FFOOD_256__bin.10 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_256__bin.2 62.21 0.02 16 1998538 46.83 296528 SAMN46068785 SRR31887291 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_256__bin.2 CM_UNINA_FFOOD__FFOOD_256__bin.2 Bacillota;Bacilli;Exiguobacteriales;Exiguobacteriaceae;Exiguobacterium_A Exiguobacterium A acetylicum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_256__bin.7 66.51 0.23 173 1695175 34.55 19159 SAMN46068785 SRR31887291 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 CM_UNINA_FFOOD__FFOOD_256__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_257__bin.3 68.4 0.04 39 1166596 39.41 45055 SAMN46068786 SRR31887290 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_257__bin.6 51.01 0.3 152 868930 53.36 7076 SAMN46068786 SRR31887290 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 CM_UNINA_FFOOD__FFOOD_257__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_258__bin.3 54.29 0.04 36 878073 51.11 34145 SAMN46068787 SRR31887289 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_259__bin.1 51.32 1.49 453 1511270 47.84 3583 SAMN46068788 SRR31887288 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MagliuloR_2024__SRR28235377__bin.1 MagliuloR_2024__SRR28235377__bin.1 Bacillota;Bacilli;Exiguobacteriales;Exiguobacteriaceae;Exiguobacterium_A Exiguobacterium A acetylicum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_259__bin.10 50.4 0.23 32 869706 50.74 34346 SAMN46068788 SRR31887288 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_259__bin.3 50.51 0.24 24 885612 39.18 67023 SAMN46068788 SRR31887288 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_260__bin.12 99.44 0.7 293 4335128 59.42 21839 SAMN46068789 SRR31887286 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_260__bin.12 CM_UNINA_FFOOD__FFOOD_260__bin.12 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Aeromonadaceae;Aeromonas Aeromonas salmonicida cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_260__bin.2 51.57 0.19 35 868621 50.75 42464 SAMN46068789 SRR31887286 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_262__bin.10 96.81 1.24 278 2573892 38.5 13963 SAMN46068791 SRR31887284 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MagliuloR_2024__SRR28235359__bin.3 MagliuloR_2024__SRR28235359__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_262__bin.6 67.22 0.02 35 1313424 39.09 53642 SAMN46068791 SRR31887284 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_262__bin.8 83.74 0.4 149 2085491 34.98 27966 SAMN46068791 SRR31887284 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__O-23.1__bin.12 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_263__bin.1 83.86 0.2 89 1355877 50.81 23282 SAMN46068792 SRR31887283 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_264__bin.4 53.7 0.14 32 953639 39.75 42108 SAMN46068793 SRR31887282 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_266__bin.11 50.89 0.42 40 907412 50.99 30357 SAMN46068795 SRR31887280 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_266__bin.5 75.1 1.31 297 1632159 39.05 6295 SAMN46068795 SRR31887280 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.11 MagliuloR_2024__SRR28235369__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A carnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_266__bin.6 79.16 1.36 227 5115844 60.66 36436 SAMN46068795 SRR31887280 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_266__bin.6 CM_UNINA_FFOOD__FFOOD_266__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E simiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_267__bin.6 76.97 0.8 126 1313317 50.91 13175 SAMN46068796 SRR31887279 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_268__bin.4 78.65 0.09 100 1213863 51.57 16169 SAMN46068797 SRR31887278 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_268__bin.6 76.01 0.72 83 1570074 35.15 33387 SAMN46068797 SRR31887278 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_268__bin.9 75.47 0.08 114 1312957 36.67 17585 SAMN46068797 SRR31887278 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_269__bin.1 93.71 0.12 111 1917379 35.2 31559 SAMN46068798 SRR31887277 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_269__bin.3 56.74 0.16 31 1099734 39.25 57581 SAMN46068798 SRR31887277 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_269__bin.4 72.28 0.09 68 933114 51.29 17799 SAMN46068798 SRR31887277 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_270__bin.1 84.06 4.6 269 1706976 37.38 8778 SAMN46068799 SRR31887275 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_104__bin.4 DeFilippisF_xxxx__DF_104__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus macedonicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_270__bin.10 69.84 0.22 41 1134464 50.92 37307 SAMN46068799 SRR31887275 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_270__bin.12 74.76 0.14 41 1961743 38.27 85322 SAMN46068799 SRR31887275 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MagliuloR_2024__SRR28235359__bin.3 MagliuloR_2024__SRR28235392__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_270__bin.13 64.72 0.65 39 1146678 39.42 41105 SAMN46068799 SRR31887275 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_270__bin.3 94.05 0.03 126 1785829 39.61 24977 SAMN46068799 SRR31887275 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_270__bin.3 CM_UNINA_FFOOD__FFOOD_270__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus suis AA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_271__bin.11 50.91 0.11 37 895829 39.37 33615 SAMN46068800 SRR31887178 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_271__bin.2 53.99 0.29 73 1558738 37.72 36961 SAMN46068800 SRR31887178 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MagliuloR_2024__SRR28235359__bin.3 CM_UNINA_FFOOD__FFOOD_271__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_271__bin.6 63.04 0.52 60 1412661 35.18 47095 SAMN46068800 SRR31887178 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__O-23.1__bin.12 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_271__bin.8 75.54 0.21 81 1126787 51.09 21579 SAMN46068800 SRR31887178 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_272__bin.2 87.91 1.14 256 2311399 34.75 23231 SAMN46068801 SRR31887177 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__O-23.1__bin.12 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_274__bin.3 66.89 2.13 496 1949301 38.4 4562 SAMN46068803 SRR31887175 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MagliuloR_2024__SRR28235359__bin.3 MagliuloR_2024__SRR28235361__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_276__bin.2 67.38 1.56 386 1416730 39.07 3842 SAMN46068805 SRR31887173 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.11 CM_UNINA_FFOOD__FFOOD_276__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A carnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_277__bin.12 76 1.94 203 4095939 64.74 38028 SAMN46068806 SRR31887172 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_277__bin.12 CM_UNINA_FFOOD__FFOOD_277__bin.12 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E palmensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_277__bin.14 56.17 3.91 245 3826685 60.62 21953 SAMN46068806 SRR31887172 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_277__bin.14 CM_UNINA_FFOOD__FFOOD_277__bin.14 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E sp002874965 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_277__bin.9 60.02 0.23 36 982275 50.83 36050 SAMN46068806 SRR31887172 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_278__bin.9 73.21 3.56 498 2123148 38.3 5227 SAMN46068807 SRR31887171 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MagliuloR_2024__SRR28235359__bin.3 CM_UNINA_FFOOD__FFOOD_278__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_279__bin.11 58.47 0.24 18 1659414 38.85 129286 SAMN46068808 SRR31887170 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MagliuloR_2024__SRR28235359__bin.3 MagliuloR_2024__SRR28235359__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_279__bin.7 87.97 0.14 70 1510051 50.72 30371 SAMN46068808 SRR31887170 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_280__bin.3 66.84 0.42 66 1000675 51.29 20948 SAMN46068809 SRR31887168 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_280__bin.6 93.61 0.4 64 2033140 35.17 49460 SAMN46068809 SRR31887168 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__O-23.1__bin.12 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_281__bin.3 69.29 1.84 1044 3804963 36.68 4071 SAMN46068810 SRR31887167 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_281__bin.3 CM_UNINA_FFOOD__FFOOD_281__bin.3 Bacteroidota;Bacteroidia;Flavobacteriales;Weeksellaceae;Chryseobacterium Chryseobacterium carnipullorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_282__bin.12 95.13 0.99 120 2674644 38.32 42611 SAMN46068811 SRR31887166 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0139-001_Enterococcus_lactis_CICC_24101 ODFM-BA-A-0139-001_Enterococcus_lactis_CICC_24101 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_282__bin.13 85.54 0.91 140 1690102 42.64 16626 SAMN46068811 SRR31887166 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_282__bin.13 CM_UNINA_FFOOD__FFOOD_282__bin.13 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus devriesei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_282__bin.14 94.45 0.61 113 2584696 38.03 44733 SAMN46068811 SRR31887166 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746834__bin.2 FontanaF_2023__SRR20746834__bin.2 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B durans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_282__bin.15 99.99 1.64 51 2214164 40.05 81348 SAMN46068811 SRR31887166 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 FontanaF_2023__SRR20746866__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_282__bin.17 90.54 1.72 163 2317367 46.79 21204 SAMN46068811 SRR31887166 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_282__bin.18 79.91 2.42 110 1798165 37.41 24992 SAMN46068811 SRR31887166 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_104__bin.4 DeFilippisF_xxxx__DF_104__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus macedonicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_282__bin.19 93.97 0.94 97 1695516 39.85 28518 SAMN46068811 SRR31887166 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_270__bin.3 CM_UNINA_FFOOD__FFOOD_270__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus suis AA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_282__bin.20 94.93 0.37 62 2128832 44.68 51872 SAMN46068811 SRR31887166 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_282__bin.21 89.64 3.17 96 1593631 37.76 25891 SAMN46068811 SRR31887166 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 MASTER_WP4_UNINA_1__PM012_71775__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_282__bin.23 81.23 0.38 262 2134025 47.05 11235 SAMN46068811 SRR31887166 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_282__bin.23 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_282__bin.3 79.17 0.56 136 1321842 51.51 11931 SAMN46068811 SRR31887166 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic CM_UNINA_FFOOD__FFOOD_282__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_282__bin.5 90.69 0.92 62 2293525 43.8 65172 SAMN46068811 SRR31887166 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_282__bin.7 79.22 0.1 92 1301776 39.62 20007 SAMN46068811 SRR31887166 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 MAG_169 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_283__bin.10 95.89 1.27 62 1743433 37.53 50400 SAMN46068812 SRR31887165 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_104__bin.4 DeFilippisF_xxxx__DF_104__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus macedonicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_283__bin.11 86.24 2.03 78 2522501 45.97 50660 SAMN46068812 SRR31887165 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_96__bin.15 DeFilippisF_xxxx__DF_96__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parafarraginis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_283__bin.12 99.95 2.12 114 2899915 37.43 67729 SAMN46068812 SRR31887165 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2235_73323__bin.9 CM_UNINA_FFOOD__FFOOD_283__bin.12 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_283__bin.15 99.97 0.06 125 2113160 35.07 28989 SAMN46068812 SRR31887165 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_283__bin.16 70.5 0.03 100 1383866 39.34 22434 SAMN46068812 SRR31887165 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_270__bin.3 CM_UNINA_FFOOD__FFOOD_270__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus suis AA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_283__bin.17 81.69 0.62 291 1707774 40.12 7147 SAMN46068812 SRR31887165 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001885995.1_ASM188599v1_genomic CM_UNINA_FFOOD__FFOOD_283__bin.17 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_G Enterococcus G italicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_283__bin.4 72.07 1.91 122 1653931 44.01 17539 SAMN46068812 SRR31887165 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 LandisEA_2021__SRS5653155__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_283__bin.5 92.55 0.03 135 2320814 46.8 25697 SAMN46068812 SRR31887165 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_283__bin.6 60.81 4.14 521 1638379 35.36 3415 SAMN46068812 SRR31887165 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_178 CM_UNINA_FFOOD__FFOOD_283__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_283__bin.7 80.3 0.67 130 1301166 51.32 13339 SAMN46068812 SRR31887165 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic CM_UNINA_FFOOD__FFOOD_283__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_283__bin.8 82.07 0.93 83 1410110 39.38 25765 SAMN46068812 SRR31887165 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 MAG_169 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_283__bin.9 99.88 2.29 165 2697614 53.67 21364 SAMN46068812 SRR31887165 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic DeFilippisF_xxxx__DF_33__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_284__bin.10 82.92 1.8 447 1986740 71.06 5175 SAMN46068813 SRR31887164 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_286__bin.4 CM_UNINA_FFOOD__FFOOD_284__bin.10 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia kristinae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_284__bin.11 100 0.44 164 2842532 37.43 32335 SAMN46068813 SRR31887164 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2235_73323__bin.9 MASTER_WP4_CSIC_1__P2235_73323__bin.9 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_284__bin.13 78.82 0.9 720 3257077 62.13 5512 SAMN46068813 SRR31887164 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_251__bin.10 CM_UNINA_FFOOD__FFOOD_284__bin.13 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Aeromonadaceae;Aeromonas Aeromonas caviae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_284__bin.16 76.42 3.11 397 1784144 39.17 5579 SAMN46068813 SRR31887164 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2230_73323__bin.3 CM_UNINA_FFOOD__FFOOD_284__bin.16 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus dysgalactiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_284__bin.20 58.16 1.89 97 1290264 44.27 20426 SAMN46068813 SRR31887164 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_284__bin.9 94.65 1.07 95 1853333 50.08 25337 SAMN46068813 SRR31887164 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_285__bin.1 89.64 1.9 105 2178149 44.59 34012 SAMN46068814 SRR31887163 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_285__bin.10 90.78 2.75 159 1927216 41.88 18754 SAMN46068814 SRR31887163 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 CM_UNINA_FFOOD__FFOOD_285__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_285__bin.11 78.46 0.11 88 1297938 50.97 22199 SAMN46068814 SRR31887163 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_285__bin.12 86.56 0 104 2338058 46.67 37009 SAMN46068814 SRR31887163 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_285__bin.15 79.61 0.35 118 1563747 39.67 28905 SAMN46068814 SRR31887163 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_270__bin.3 CM_UNINA_FFOOD__FFOOD_270__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus suis AA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_285__bin.3 73.59 0.34 133 1349769 36.34 16985 SAMN46068814 SRR31887163 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 CM_UNINA_FFOOD__FFOOD_285__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_285__bin.5 92.13 0.34 64 1820019 37.36 42404 SAMN46068814 SRR31887163 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_104__bin.4 DeFilippisF_xxxx__DF_104__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus macedonicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_285__bin.7 97.32 0.33 96 2136253 43.97 41039 SAMN46068814 SRR31887163 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_285__bin.8 62.48 1.29 636 1883681 33.03 3169 SAMN46068814 SRR31887163 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 CM_UNINA_FFOOD__FFOOD_285__bin.8 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_285__bin.9 94.44 0.21 69 2151666 35.07 80014 SAMN46068814 SRR31887163 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_286__bin.1 88.63 0.6 101 2151960 44.49 37610 SAMN46068815 SRR31887162 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_286__bin.10 74.93 0 79 1927388 46.81 35216 SAMN46068815 SRR31887162 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 AlvarezOrdonezA_xxxx__Q02-30__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_286__bin.11 53.55 0.02 36 1058641 39.29 46979 SAMN46068815 SRR31887162 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 MAG_169 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_286__bin.2 74.84 1.01 274 1341999 51.25 5827 SAMN46068815 SRR31887162 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic CM_UNINA_FFOOD__FFOOD_286__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_286__bin.3 92.74 0.68 69 1752648 39.75 39307 SAMN46068815 SRR31887162 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_270__bin.3 CM_UNINA_FFOOD__FFOOD_286__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus suis AA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_286__bin.4 97.93 0.17 171 2392965 71.99 22706 SAMN46068815 SRR31887162 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_286__bin.4 CM_UNINA_FFOOD__FFOOD_286__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia kristinae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_286__bin.6 92.26 1.33 89 1789276 37.36 37526 SAMN46068815 SRR31887162 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_104__bin.4 DeFilippisF_xxxx__DF_104__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus macedonicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_287__bin.11 79.06 0.19 64 1395545 50.5 34197 SAMN46068816 SRR31887161 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_62__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_287__bin.12 90.96 0.53 92 2130763 44.55 40496 SAMN46068816 SRR31887161 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_287__bin.13 85.3 0.28 154 1607049 36.35 16399 SAMN46068816 SRR31887161 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_287__bin.4 93.44 0.35 50 2212033 43.88 73626 SAMN46068816 SRR31887161 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_287__bin.6 65.91 0.11 67 1110860 39.65 24123 SAMN46068816 SRR31887161 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_287__bin.7 52.16 0.63 461 1374480 37.14 3136 SAMN46068816 SRR31887161 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_385__bin.9 CM_UNINA_FFOOD__FFOOD_287__bin.7 Bacteroidota;Bacteroidia;Flavobacteriales;Weeksellaceae;Kaistella Kaistella haifensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_287__bin.8 80.75 0.06 96 2193327 46.8 39530 SAMN46068816 SRR31887161 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_288__bin.1 72.03 0.23 118 1297955 36.35 14644 SAMN46068817 SRR31887160 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_288__bin.4 79.61 0.2 71 1381224 53.36 23277 SAMN46068817 SRR31887160 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 MAG_385 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_288__bin.5 57.05 1.17 37 891291 50.36 41646 SAMN46068817 SRR31887160 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic CM_UNINA_FFOOD__FFOOD_288__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_288__bin.6 52.53 0.14 71 1050718 44.24 20603 SAMN46068817 SRR31887160 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_289__bin.16 89.91 0.23 160 1621112 36.47 14890 SAMN46068818 SRR31887159 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_289__bin.17 95.99 1.52 95 1864171 39.25 30848 SAMN46068818 SRR31887159 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2230_73323__bin.3 MASTER_WP4_CSIC_1__P2230_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus dysgalactiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_289__bin.18 95.25 3.25 147 2341112 35.71 25707 SAMN46068818 SRR31887159 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_289__bin.18 CM_UNINA_FFOOD__FFOOD_289__bin.18 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus agnetis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_289__bin.2 83.23 0.26 50 1955049 35.14 92813 SAMN46068818 SRR31887159 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_289__bin.25 62.79 0.51 56 3268170 56 97859 SAMN46068818 SRR31887159 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. EBC_134.6 CM_UNINA_FFOOD__FFOOD_289__bin.25 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella michiganensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_289__bin.31 84.49 0.3 31 1545997 39.27 85084 SAMN46068818 SRR31887159 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_289__bin.32 82.32 1.9 257 4166892 54.82 26332 SAMN46068818 SRR31887159 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_289__bin.32 CM_UNINA_FFOOD__FFOOD_289__bin.32 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Lelliottia Lelliottia nimipressuralis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_289__bin.37 79.87 0.32 110 1273573 51.2 15564 SAMN46068818 SRR31887159 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_289__bin.8 54.6 0.1 101 1483123 42.33 22081 SAMN46068818 SRR31887159 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-26__bin.7 CM_UNINA_FFOOD__FFOOD_289__bin.8 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter johnsonii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_290__bin.1 99.98 0.27 24 2256002 57.64 130899 SAMN46068822 SRR31887154 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_290__bin.1 CM_UNINA_FFOOD__FFOOD_290__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia crudilactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_290__bin.10 99.96 0.18 29 1589684 38 80104 SAMN46068822 SRR31887154 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_290__bin.11 74.2 0.42 247 2391551 43.82 14082 SAMN46068822 SRR31887154 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FranciosaI_2021__SRR12227952__bin.4 WalshAM_2020__ERS3466758__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraplantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_290__bin.12 95.13 0.37 56 1682395 38.93 50889 SAMN46068822 SRR31887154 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_290__bin.13 90.26 0.5 82 1496985 50.89 27729 SAMN46068822 SRR31887154 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_290__bin.14 81.99 0.56 223 2403317 45.24 14628 SAMN46068822 SRR31887154 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 AlvarezOrdonezA_xxxx__Q06-27__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_290__bin.2 93.02 0.15 56 1834909 63.9 57525 SAMN46068822 SRR31887154 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_296__bin.3 CM_UNINA_FFOOD__FFOOD_296__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_290__bin.3 84.76 0.06 51 1890458 35.06 72227 SAMN46068822 SRR31887154 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_290__bin.5 81.66 0.18 53 2483683 47.97 70891 SAMN46068822 SRR31887154 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 MASTER_WP4_UNINA_1__GR111_73417__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_290__bin.7 84.16 1.09 488 2369700 38.56 6326 SAMN46068822 SRR31887154 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_290__bin.7 CM_UNINA_FFOOD__FFOOD_290__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus sucicola cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_290__bin.9 93.67 3.25 56 2462640 43.79 73821 SAMN46068822 SRR31887154 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_291__bin.1 91.57 0.59 87 2279726 42.52 60428 SAMN46068823 SRR31887153 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_291__bin.2 90.23 0.99 200 2512735 46.89 16356 SAMN46068823 SRR31887153 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_291__bin.4 86.95 0.93 172 1942657 44.07 17321 SAMN46068823 SRR31887153 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 CM_UNINA_FFOOD__FFOOD_291__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_291__bin.5 100 0.04 32 2025664 37.63 167102 SAMN46068823 SRR31887153 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_291__bin.6 81.23 0.45 80 1371384 39.39 23381 SAMN46068823 SRR31887153 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_292__bin.1 87.6 0 99 2103158 46.85 30740 SAMN46068824 SRR31887152 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_292__bin.4 55.56 0.09 33 893336 39.87 32151 SAMN46068824 SRR31887152 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_292__bin.7 85.74 0.23 225 2383452 47.01 13540 SAMN46068824 SRR31887152 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 DeFilippisF_xxxx__DF_96__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_292__bin.8 92.31 2.23 428 2486466 64.16 7565 SAMN46068824 SRR31887152 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__575_CabotClothbound__bin.2 WolfeBE_2014__575_CabotClothbound__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia sp030454085 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_294__bin.1 99.94 0.3 59 2322624 43.89 75845 SAMN46068826 SRR31887150 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_294__bin.10 91.53 0.13 53 2606974 46.92 79310 SAMN46068826 SRR31887150 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_294__bin.5 84.64 0.01 205 2224628 46.88 15141 SAMN46068826 SRR31887150 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746833__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_294__bin.8 82.42 2.31 352 1899095 42.7 6500 SAMN46068826 SRR31887150 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_294__bin.9 99.95 2.83 44 1911629 37.88 118707 SAMN46068826 SRR31887150 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_295__bin.1 57.43 0.85 563 1720545 44.89 3238 SAMN46068827 SRR31887149 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 CM_UNINA_FFOOD__FFOOD_295__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_295__bin.2 87.1 1.38 316 2093125 46.4 9254 SAMN46068827 SRR31887149 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 FontanaF_2023__SRR20746964__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_295__bin.3 94.29 1.62 121 1843517 36.29 28383 SAMN46068827 SRR31887149 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_295__bin.4 87.35 0.26 130 1600468 39.26 17180 SAMN46068827 SRR31887149 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_295__bin.5 100 0.21 91 2351928 34.89 68508 SAMN46068827 SRR31887149 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_296__bin.1 99.71 0.22 64 1650779 37.89 66328 SAMN46068828 SRR31887148 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_296__bin.12 66.11 2.21 424 1524805 58.21 3875 SAMN46068828 SRR31887148 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_290__bin.1 CM_UNINA_FFOOD__FFOOD_296__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia crudilactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_296__bin.13 93.02 3.96 436 2651483 42.49 8287 SAMN46068828 SRR31887148 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_296__bin.3 99.71 0.14 44 1936176 63.76 60538 SAMN46068828 SRR31887148 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_296__bin.3 CM_UNINA_FFOOD__FFOOD_296__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_296__bin.5 71.9 0.59 29 2149740 44.5 113871 SAMN46068828 SRR31887148 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_296__bin.7 87.59 0.07 199 2496542 46.69 19093 SAMN46068828 SRR31887148 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 PatroJN_2016__SRS1044739__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_296__bin.9 92.91 1.49 270 2201035 43.96 11505 SAMN46068828 SRR31887148 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 CM_UNINA_FFOOD__FFOOD_296__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_297__bin.4 92.69 0.43 269 2508440 46.78 13371 SAMN46068829 SRR31887274 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_297__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_297__bin.6 86.41 1.98 547 2554992 33.02 6525 SAMN46068829 SRR31887274 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 CM_UNINA_FFOOD__FFOOD_297__bin.6 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_298__bin.1 55.01 0.16 28 977946 39.43 53479 SAMN46068830 SRR31887273 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_298__bin.6 50.03 2.83 106 1175370 32.85 16358 SAMN46068830 SRR31887273 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 CM_UNINA_FFOOD__FFOOD_298__bin.6 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_298__bin.9 50.71 0.13 40 1330641 46.82 59579 SAMN46068830 SRR31887273 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 DeFilippisF_xxxx__DF_26__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_299__bin.1 97.06 2.08 207 2675550 53.62 17505 SAMN46068831 SRR31887272 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic DeFilippisF_xxxx__DF_33__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_299__bin.10 60.2 0.07 59 894398 50.66 18358 SAMN46068831 SRR31887272 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_73__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_299__bin.11 91.92 0.18 164 1604092 36.46 14712 SAMN46068831 SRR31887272 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_299__bin.12 86.33 1.75 255 2148339 43.92 12154 SAMN46068831 SRR31887272 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_299__bin.7 100 0.27 87 2561056 67.4 42046 SAMN46068831 SRR31887272 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_299__bin.9 94.94 0.36 53 1709642 39.03 66103 SAMN46068831 SRR31887272 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_300__bin.1 88.42 0.67 184 2639618 46.85 22818 SAMN46068832 SRR31887271 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 DeFilippisF_xxxx__DF_96__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_300__bin.2 81.16 0.32 91 1461010 39.22 27324 SAMN46068832 SRR31887271 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_300__bin.3 83.42 0.87 99 1439737 50.95 18272 SAMN46068832 SRR31887271 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_300__bin.4 83.86 0.03 104 2111172 46.7 38011 SAMN46068832 SRR31887271 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_300__bin.8 93.45 1.32 159 1759503 36.42 15305 SAMN46068832 SRR31887271 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_300__bin.9 100 3.29 62 2913642 41.54 76563 SAMN46068832 SRR31887271 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GR001_73417__bin.3 CM_UNINA_FFOOD__FFOOD_300__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus raoultii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_304__bin.1 90.74 4.6 455 2297170 43.9 6486 SAMN46068835 SRR31887268 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 CM_UNINA_FFOOD__FFOOD_304__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_306__bin.1 82.66 2.12 540 2162591 46.89 4682 SAMN46068837 SRR31887266 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_306__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_308__bin.1 63.92 0.18 76 1724431 46.69 33894 SAMN46068839 SRR31887263 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_325__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_308__bin.11 82.4 0.34 77 1469838 50.67 24520 SAMN46068839 SRR31887263 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_308__bin.5 86.23 0.01 114 1433187 36.5 17890 SAMN46068839 SRR31887263 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_308__bin.9 62.16 0.09 28 1049713 39.76 66618 SAMN46068839 SRR31887263 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_309__bin.1 99.89 0.41 84 1697164 39.16 33417 SAMN46068840 SRR31887262 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_309__bin.2 89.92 3.29 245 2801042 46.45 18236 SAMN46068840 SRR31887262 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_309__bin.3 65.87 0.77 563 1732535 34.59 3324 SAMN46068840 SRR31887262 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 CM_UNINA_FFOOD__FFOOD_309__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_309__bin.5 81.04 0.13 71 1424968 53.39 29022 SAMN46068840 SRR31887262 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 MASTER_WP4_UNINA_1__PA207_73417__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_309__bin.6 85.23 0.08 134 1609543 36.36 18714 SAMN46068840 SRR31887262 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_309__bin.7 86.35 0.26 494 1956688 36.97 4599 SAMN46068840 SRR31887262 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_385__bin.9 CM_UNINA_FFOOD__FFOOD_309__bin.7 Bacteroidota;Bacteroidia;Flavobacteriales;Weeksellaceae;Kaistella Kaistella haifensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_310__bin.1 90.86 2.73 112 2506090 46.79 39340 SAMN46068841 SRR31887261 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_310__bin.2 82.97 1.02 161 1585912 36.31 14144 SAMN46068841 SRR31887261 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_310__bin.3 99.45 0.79 102 2219748 34.94 44978 SAMN46068841 SRR31887261 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_310__bin.4 93.32 1.65 106 2457324 48.2 34988 SAMN46068841 SRR31887261 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 CM_UNINA_FFOOD__FFOOD_415__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_310__bin.6 78.76 0.6 81 1419521 50.45 23910 SAMN46068841 SRR31887261 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_310__bin.7 75.65 1.43 312 1820997 47.24 7255 SAMN46068841 SRR31887261 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_310__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_311__bin.11 90.04 1.64 82 1631107 37.88 44352 SAMN46068842 SRR31887260 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic FontanaF_2023__SRR20746925__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_311__bin.3 90.88 1.97 304 2483160 53.82 10438 SAMN46068842 SRR31887260 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic CM_UNINA_FFOOD__FFOOD_311__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_311__bin.4 76.37 2.24 395 2277586 47.03 7312 SAMN46068842 SRR31887260 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_311__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_311__bin.5 86.43 0.7 230 1824603 63.93 10735 SAMN46068842 SRR31887260 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_296__bin.3 CM_UNINA_FFOOD__FFOOD_296__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_311__bin.6 88.84 0.82 233 2434407 46.72 14074 SAMN46068842 SRR31887260 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_311__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_311__bin.7 88.08 4.63 599 2913339 42.08 6027 SAMN46068842 SRR31887260 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO004_71775__bin.8 MASTER_WP4_UNINA_1__GO004_71775__bin.8 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_A Enterococcus A gilvus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_311__bin.8 90.38 0.17 78 1561986 39.17 32677 SAMN46068842 SRR31887260 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_311__bin.9 88.52 3.2 304 2979651 35.07 19993 SAMN46068842 SRR31887260 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 CM_UNINA_FFOOD__FFOOD_311__bin.9 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_312__bin.1 80.09 1.82 283 1621822 42.62 7208 SAMN46068843 SRR31887259 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 MASTER_WP4_FFoQSI_2__VB16-28__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_312__bin.2 84.02 3.25 296 1665818 36.59 7381 SAMN46068843 SRR31887259 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_312__bin.3 86.64 0.85 625 3045341 67.35 5802 SAMN46068843 SRR31887259 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_312__bin.3 CM_UNINA_FFOOD__FFOOD_312__bin.3 Pseudomonadota;Alphaproteobacteria;Caulobacterales;Caulobacteraceae;Brevundimonas Brevundimonas diminuta cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_312__bin.5 94.29 0.56 108 2765989 46.83 38628 SAMN46068843 SRR31887259 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 MASTER_WP4_UNINA_1__CS007_71775__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_312__bin.6 88.49 0.23 188 2263231 46.95 17465 SAMN46068843 SRR31887259 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746833__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_312__bin.7 99.97 1.58 114 2614326 43.85 86638 SAMN46068843 SRR31887259 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_313__bin.1 99.63 0.17 164 2390719 46.83 21567 SAMN46068844 SRR31887258 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_313__bin.4 55.88 0.86 1967 5142146 68.25 2691 SAMN46068844 SRR31887258 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_313__bin.4 CM_UNINA_FFOOD__FFOOD_313__bin.4 Actinomycetota;Actinomycetes;Propionibacteriales;Kribbellaceae;Kribbella Kribbella sindirgiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_314__bin.1 89.99 2.39 204 1878949 36.11 14386 SAMN46068845 SRR31887257 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_314__bin.3 76.31 2.81 562 1814468 67.01 3540 SAMN46068845 SRR31887257 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 CM_UNINA_FFOOD__FFOOD_314__bin.3 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_314__bin.4 87.48 1.47 229 2367836 46.86 15604 SAMN46068845 SRR31887257 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_382__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_314__bin.5 99.39 0.37 99 1625561 39.23 30412 SAMN46068845 SRR31887257 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_314__bin.6 83.36 0.55 116 1459219 50.7 17647 SAMN46068845 SRR31887257 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_73__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_314__bin.7 91.81 4.16 267 2594128 53.74 13191 SAMN46068845 SRR31887257 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic CM_UNINA_FFOOD__FFOOD_314__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_317__bin.2 79.7 0 157 2050476 46.73 21213 SAMN46068846 SRR31887256 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_317__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_317__bin.5 53.21 1.5 220 1347075 48.4 7014 SAMN46068846 SRR31887256 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 CM_UNINA_FFOOD__FFOOD_317__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_317__bin.7 80.72 0.11 70 1373981 50.9 25976 SAMN46068846 SRR31887256 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_73__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_317__bin.9 92.08 1.63 157 2515220 53.88 23005 SAMN46068846 SRR31887256 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic DeFilippisF_xxxx__DF_33__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_318__bin.1 86.69 0.19 132 1525790 36.44 18645 SAMN46068847 SRR31887255 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_318__bin.2 65.96 0.04 52 1130101 39.56 30831 SAMN46068847 SRR31887255 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 FontanaF_2023__SRR20746925__bin.9 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_318__bin.5 82.38 2.13 437 2017044 34.91 5729 SAMN46068847 SRR31887255 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 CM_UNINA_FFOOD__FFOOD_318__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_319__bin.10 93.06 3.66 304 2899548 32.91 15509 SAMN46068848 SRR31887254 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_319__bin.11 91.73 3.8 367 2740224 35.08 12457 SAMN46068848 SRR31887254 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_319__bin.12 83.9 0.11 184 2247368 46.87 18201 SAMN46068848 SRR31887254 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 AlvarezOrdonezA_xxxx__Q02-30__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_319__bin.13 93.56 1.35 266 2624244 56.14 15176 SAMN46068848 SRR31887254 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 CM_UNINA_FFOOD__FFOOD_319__bin.13 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_319__bin.19 65.97 0.28 308 1622514 46.46 6120 SAMN46068848 SRR31887254 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 CM_UNINA_FFOOD__FFOOD_319__bin.19 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_319__bin.6 99.93 0.45 180 2258403 43.98 20247 SAMN46068848 SRR31887254 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_319__bin.7 53.99 0.15 93 1577220 33.78 29948 SAMN46068848 SRR31887254 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_319__bin.7 CM_UNINA_FFOOD__FFOOD_319__bin.7 Bacillota;Bacilli;Bacillales_D;Amphibacillaceae;Pseudogracilibacillus Pseudogracilibacillus sp035301645 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_320__bin.10 93.19 0.51 252 2815294 42.04 17518 SAMN46068849 SRR31887252 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 181 MAG_643 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_320__bin.14 77.54 4.04 148 1888403 34.89 24163 SAMN46068849 SRR31887252 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.17 DeFilippisF_xxxx__DF_100__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Marinilactibacillus Marinilactibacillus psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_320__bin.15 90.55 0.99 78 1883858 38.54 52479 SAMN46068849 SRR31887252 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967740__bin.10 LeechJ_2020__ERS3967740__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus parvulus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_320__bin.3 50.9 0.11 36 884179 39.29 35424 SAMN46068849 SRR31887252 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_320__bin.7 65.94 1.32 299 1335516 38.88 5400 SAMN46068849 SRR31887252 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. C-R03.bin.7 CM_UNINA_FFOOD__FFOOD_320__bin.7 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Bavariicoccus Bavariicoccus seileri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_320__bin.8 96.66 1.99 366 3911563 63.28 19660 SAMN46068849 SRR31887252 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 CM_UNINA_FFOOD__FFOOD_320__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_321__bin.10 89.75 1.26 471 2624900 32.83 7909 SAMN46068850 SRR31887251 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 CM_UNINA_FFOOD__FFOOD_321__bin.10 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_321__bin.3 90.13 0.14 145 2094672 34.96 26265 SAMN46068850 SRR31887251 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_321__bin.4 86.03 0.95 149 1974606 35.49 18952 SAMN46068850 SRR31887251 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_321__bin.6 96.95 0 113 2317149 46.72 37913 SAMN46068850 SRR31887251 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_321__bin.9 97.69 0.22 73 2082955 38.48 65445 SAMN46068850 SRR31887251 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967740__bin.10 LeechJ_2020__ERS3967740__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus parvulus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_322__bin.4 73.24 0.65 56 1323822 39.31 42404 SAMN46068851 SRR31887250 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_322__bin.5 85.6 0.13 116 1579947 50.49 18291 SAMN46068851 SRR31887250 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_73__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_322__bin.6 84.53 4.07 443 2936389 47.33 8947 SAMN46068851 SRR31887250 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 MASTER_WP4_UNINA_1__GR111_73417__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_322__bin.7 77.24 2.22 430 1986347 54.13 5422 SAMN46068851 SRR31887250 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic CM_UNINA_FFOOD__FFOOD_322__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_322__bin.8 70.27 1.29 83 1725052 44.72 31518 SAMN46068851 SRR31887250 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_323__bin.1 93.38 2.33 141 2793283 46.82 26629 SAMN46068852 SRR31887249 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_323__bin.10 76.68 4.42 297 1707601 38.98 7265 SAMN46068852 SRR31887249 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.11 CM_UNINA_FFOOD__FFOOD_323__bin.10 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A carnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_323__bin.2 76.08 1.17 101 1838709 34.99 29257 SAMN46068852 SRR31887249 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_323__bin.4 68.81 0.29 47 1095043 50.8 29100 SAMN46068852 SRR31887249 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_73__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_323__bin.5 92.16 1.88 169 1669920 36.34 15478 SAMN46068852 SRR31887249 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_323__bin.6 90.03 0.04 208 2426004 46.81 15749 SAMN46068852 SRR31887249 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_323__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_323__bin.7 88.3 0.26 157 2059728 35.41 21304 SAMN46068852 SRR31887249 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_323__bin.8 87.93 0.02 95 1585969 39.15 28084 SAMN46068852 SRR31887249 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_324__bin.10 86.4 1.51 194 2222957 35.49 16975 SAMN46068853 SRR31887248 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_324__bin.12 50.58 0.09 66 982275 39.36 23102 SAMN46068853 SRR31887248 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 MASTER_WP4_UNINA_1__GO011_71775__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_324__bin.15 92.73 1.76 388 2766416 43.95 9125 SAMN46068853 SRR31887248 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FranciosaI_2021__SRR12227952__bin.4 CM_UNINA_FFOOD__FFOOD_324__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraplantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_324__bin.8 87.11 0.66 89 1881217 38.61 50161 SAMN46068853 SRR31887248 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967740__bin.10 LeechJ_2020__ERS3967740__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus parvulus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_324__bin.9 93.11 0.33 169 2316456 34.67 24860 SAMN46068853 SRR31887248 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_325__bin.2 95.66 0.15 84 2834825 46.67 47106 SAMN46068854 SRR31887247 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_325__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_325__bin.3 99.95 1.33 99 2417661 43.79 45488 SAMN46068854 SRR31887247 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_325__bin.5 58.75 0.15 56 953392 39.88 23127 SAMN46068854 SRR31887247 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_325__bin.6 92.63 0.13 214 2394646 46.84 15649 SAMN46068854 SRR31887247 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_325__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_325__bin.8 100 0.12 65 1969956 39.04 42282 SAMN46068854 SRR31887247 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 CM_UNINA_FFOOD__FFOOD_325__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_325__bin.9 62.63 3 450 1607018 43.03 3960 SAMN46068854 SRR31887247 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 CM_UNINA_FFOOD__FFOOD_325__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_326__bin.1 98.6 0.19 177 2647558 55.67 22718 SAMN46068855 SRR31887246 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_326__bin.11 97.14 0.15 56 2116386 55.37 76347 SAMN46068855 SRR31887246 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_326__bin.13 86.39 0.5 671 3038048 68.03 5493 SAMN46068855 SRR31887246 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_326__bin.13 CM_UNINA_FFOOD__FFOOD_326__bin.13 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Luteococcus Luteococcus japonicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_326__bin.15 91.76 0.26 256 2289573 43.77 12464 SAMN46068855 SRR31887246 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_326__bin.4 97.56 0.02 49 2651234 46.63 80333 SAMN46068855 SRR31887246 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746915__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_326__bin.6 82.75 3.72 460 2226657 59.36 5844 SAMN46068855 SRR31887246 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__FO011_71775__bin.8 CM_UNINA_FFOOD__FFOOD_326__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_326__bin.7 85.54 0.35 329 3365569 63.48 16920 SAMN46068855 SRR31887246 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_326__bin.8 91.08 0.14 236 3353198 68.54 22710 SAMN46068855 SRR31887246 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_326__bin.9 92.14 1.06 160 2353297 67.45 24558 SAMN46068855 SRR31887246 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_327__bin.1 84.73 3.7 151 1691663 36.28 15605 SAMN46068856 SRR31887245 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_327__bin.2 96.09 0.29 109 2268578 35.04 41728 SAMN46068856 SRR31887245 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_327__bin.3 100 0.04 17 1922672 37.65 167102 SAMN46068856 SRR31887245 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_327__bin.4 63.44 2.7 395 1289926 36.77 3397 SAMN46068856 SRR31887245 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KharnaiorP_2023__SRR22859379__bin.8 CM_UNINA_FFOOD__FFOOD_327__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_327__bin.5 70.38 1.23 431 1828360 46.31 4836 SAMN46068856 SRR31887245 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 CM_UNINA_FFOOD__FFOOD_327__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_327__bin.6 86.66 0.07 102 1555007 39.17 24967 SAMN46068856 SRR31887245 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_328__bin.1 66.88 0.14 118 1556130 35.34 18032 SAMN46068857 SRR31887244 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_328__bin.4 77.46 1.26 173 1664727 35.16 13646 SAMN46068857 SRR31887244 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_328__bin.5 65.07 0.08 82 1048395 39.81 18517 SAMN46068857 SRR31887244 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 FontanaF_2023__SRR20746855__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_328__bin.6 90.02 0.18 56 1625235 37.53 41255 SAMN46068857 SRR31887244 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 MASTER_WP4_UNINA_1__PM012_71775__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_328__bin.7 92.4 0.14 111 2330724 46.76 31816 SAMN46068857 SRR31887244 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_329__bin.11 85.61 0.28 70 1493213 50.69 38848 SAMN46068858 SRR31887243 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_329__bin.14 98.74 0.56 306 3121054 64.53 16867 SAMN46068858 SRR31887243 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259376__bin.8 CM_UNINA_FFOOD__FFOOD_329__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Arthrobacter_H Arthrobacter H rhombi A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_329__bin.15 99.96 0.81 181 3912503 42.12 40989 SAMN46068858 SRR31887243 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_329__bin.15 CM_UNINA_FFOOD__FFOOD_329__bin.15 Bacteroidota;Bacteroidia;Sphingobacteriales;Sphingobacteriaceae;Sphingobacterium Sphingobacterium sp900163865 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_329__bin.18 76.12 0.31 138 2689900 55.92 37398 SAMN46068858 SRR31887243 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_114__bin.22 MASTER_WP4_UNINA_1__FO005_71775__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_329__bin.19 83 0.21 73 1460672 39.33 29224 SAMN46068858 SRR31887243 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_329__bin.2 90.99 2.63 190 1620403 42.24 11265 SAMN46068858 SRR31887243 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_329__bin.22 91.95 3.52 370 2522419 68.88 10129 SAMN46068858 SRR31887243 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 160 FalardeauJ_2023__SRR20811221__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_329__bin.5 53.11 0.57 535 1917996 44.08 3989 SAMN46068858 SRR31887243 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2G__bin.45 CM_UNINA_FFOOD__FFOOD_329__bin.5 Bacteroidota;Bacteroidia;Sphingobacteriales;Sphingobacteriaceae;Sphingobacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_329__bin.6 86.67 1.89 227 2849774 41.99 19791 SAMN46068858 SRR31887243 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 181 MAG_643 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_330__bin.1 76.39 2.68 236 1901936 47.11 10725 SAMN46068859 SRR31887339 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_330__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_330__bin.10 71.6 0.16 200 1204848 36.05 7067 SAMN46068859 SRR31887339 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 CM_UNINA_FFOOD__FFOOD_330__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_330__bin.2 79.04 3.28 279 2226499 48.32 9439 SAMN46068859 SRR31887339 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 MASTER_WP4_UNINA_1__GR111_73417__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_330__bin.4 84.42 0.32 70 1499422 50.66 27252 SAMN46068859 SRR31887339 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_73__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_330__bin.6 92.52 0.54 99 2484311 53.7 33963 SAMN46068859 SRR31887339 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic DeFilippisF_xxxx__DF_33__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_330__bin.7 87.37 0.51 176 2294794 47.05 19172 SAMN46068859 SRR31887339 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_382__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_331__bin.1 60.57 0.29 105 1370594 35.55 18575 SAMN46068860 SRR31887338 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_331__bin.11 87.28 0.05 99 1564943 39.21 29277 SAMN46068860 SRR31887338 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_331__bin.12 70.36 1.32 382 1433534 42.14 4085 SAMN46068860 SRR31887338 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 CM_UNINA_FFOOD__FFOOD_331__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_331__bin.14 99.99 1.58 245 2435032 67.39 14710 SAMN46068860 SRR31887338 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MASTER_WP4_UNINA_1__PA002_73417__bin.5 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_331__bin.15 84.44 0.36 217 2186955 46.89 14871 SAMN46068860 SRR31887338 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_323__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_331__bin.16 53.44 1.01 79 1212812 34.99 28231 SAMN46068860 SRR31887338 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_331__bin.8 50.99 0.21 50 888279 50.66 23213 SAMN46068860 SRR31887338 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_73__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_332__bin.3 82.99 0.32 286 2253913 46.77 9596 SAMN46068861 SRR31887337 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_332__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_332__bin.4 88.61 2.79 188 1639785 36.3 13520 SAMN46068861 SRR31887337 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_332__bin.5 84.04 0.26 91 1472332 50.97 26040 SAMN46068861 SRR31887337 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_73__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_333__bin.1 79.45 0.7 253 1416033 39 6623 SAMN46068862 SRR31887336 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_333__bin.4 90.26 0.54 222 2418730 46.77 14385 SAMN46068862 SRR31887336 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_333__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_333__bin.5 93.02 1.95 162 1695736 36.36 15581 SAMN46068862 SRR31887336 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_333__bin.6 83.63 1.02 79 1479769 50.91 27757 SAMN46068862 SRR31887336 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_334__bin.1 83.2 0.31 157 2271695 46.81 22297 SAMN46068863 SRR31887335 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_325__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_334__bin.2 87.02 2.32 135 1590019 36.6 18635 SAMN46068863 SRR31887335 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_334__bin.5 52.73 0.35 329 1405545 48.71 4637 SAMN46068863 SRR31887335 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 CM_UNINA_FFOOD__FFOOD_334__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_334__bin.8 97.32 0.5 271 2612275 53.73 12503 SAMN46068863 SRR31887335 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic CM_UNINA_FFOOD__FFOOD_334__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_334__bin.9 78.35 0.13 297 2179788 46.87 9061 SAMN46068863 SRR31887335 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_334__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_335__bin.1 87.86 0.08 99 2281578 46.75 31710 SAMN46068864 SRR31887334 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746833__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_335__bin.4 85 0.14 128 2444863 46.94 27273 SAMN46068864 SRR31887334 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_335__bin.5 73.6 0.01 68 1230512 50.91 26283 SAMN46068864 SRR31887334 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_336__bin.3 78.48 0.68 274 2101933 47.17 9475 SAMN46068865 SRR31887333 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_336__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_336__bin.5 90.89 2.35 183 1604537 36.51 13675 SAMN46068865 SRR31887333 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_336__bin.6 80.56 0.53 79 1422776 50.67 29145 SAMN46068865 SRR31887333 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_337__bin.2 73.71 3.24 386 1529611 36.35 4728 SAMN46068866 SRR31887332 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 CM_UNINA_FFOOD__FFOOD_337__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_337__bin.4 68 2.91 426 1368268 37.61 3514 SAMN46068866 SRR31887332 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 CM_UNINA_FFOOD__FFOOD_337__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_337__bin.5 84.85 1.43 127 1535661 39.31 21444 SAMN46068866 SRR31887332 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_337__bin.6 99.92 0.06 40 2960410 46.76 119459 SAMN46068866 SRR31887332 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_338__bin.1 99.99 0.56 174 2660035 33.07 28237 SAMN46068867 SRR31887331 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_338__bin.11 99.97 0.95 123 2355713 43.89 45500 SAMN46068867 SRR31887331 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_338__bin.13 81.15 0.29 100 1389336 39.57 27862 SAMN46068867 SRR31887331 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 MAG_169 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_338__bin.14 85.2 1.75 131 1479352 51.07 15259 SAMN46068867 SRR31887331 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_1__FO007_71775__bin.19 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_338__bin.15 68.5 1.68 484 2064216 45.04 4909 SAMN46068867 SRR31887331 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 CM_UNINA_FFOOD__FFOOD_338__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_338__bin.16 90.08 3.27 338 3796419 63.11 17086 SAMN46068867 SRR31887331 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_338__bin.18 91.32 1.37 224 2489639 70.83 17572 SAMN46068867 SRR31887331 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB16-22__bin.7 MASTER_WP4_FFoQSI_2__VB16-22__bin.7 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Kocuria Kocuria salsicia cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_338__bin.19 79.13 1.47 85 1641037 37.78 37358 SAMN46068867 SRR31887331 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 MASTER_WP4_UNINA_1__PM012_71775__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_338__bin.2 99.42 0.45 235 2560268 67.38 17601 SAMN46068867 SRR31887331 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_338__bin.20 99.98 0.81 121 2827385 37.37 47804 SAMN46068867 SRR31887331 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2235_73323__bin.9 CM_UNINA_FFOOD__FFOOD_338__bin.20 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_338__bin.5 99.68 2.19 138 3115587 67.64 44823 SAMN46068867 SRR31887331 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 FalardeauJ_2023__SRR20811223__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_338__bin.6 98.65 0.03 169 2482792 55.62 23443 SAMN46068867 SRR31887331 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_338__bin.7 86.58 0.33 208 2413215 46.82 16217 SAMN46068867 SRR31887331 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FalardeauJ_2023__SRR20811272__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_338__bin.9 92.42 1.26 144 2918581 67.04 41243 SAMN46068867 SRR31887331 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_339__bin.1 65.71 2.29 560 1832984 60.18 3557 SAMN46068868 SRR31887330 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 CM_UNINA_FFOOD__FFOOD_339__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_339__bin.10 99.65 4.29 140 3049032 67.7 46290 SAMN46068868 SRR31887330 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 FalardeauJ_2023__SRR20811223__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_339__bin.11 99.9 3.56 41 2430735 35.03 153588 SAMN46068868 SRR31887330 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__O-23.1__bin.12 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_339__bin.12 83.63 1.38 98 1547233 39.27 25808 SAMN46068868 SRR31887330 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 MAG_169 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_339__bin.14 94.73 0.21 295 2512207 68.77 12408 SAMN46068868 SRR31887330 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 160 160 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_339__bin.15 99.49 0.2 133 2481885 60.3 27749 SAMN46068868 SRR31887330 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0141-001_Corynebacterium_flavescens_CCUG_28791T ODFM-BA-A-0141-001_Corynebacterium_flavescens_CCUG_28791T Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium flavescens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_339__bin.16 67.4 3.4 416 1582764 36.94 4386 SAMN46068868 SRR31887330 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 CM_UNINA_FFOOD__FFOOD_339__bin.16 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Ruoffia Ruoffia tabacinasalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_339__bin.17 91.87 1.23 186 2206406 47.04 15756 SAMN46068868 SRR31887330 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_339__bin.18 99.84 1.04 373 2872220 37.58 11693 SAMN46068868 SRR31887330 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2235_73323__bin.9 CM_UNINA_FFOOD__FFOOD_338__bin.20 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_339__bin.2 89.05 0.82 305 3521056 63.17 19041 SAMN46068868 SRR31887330 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_339__bin.20 84.34 2.51 452 2267167 43.99 6014 SAMN46068868 SRR31887330 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy5_bin.lin.34 MASTER_WP4_TEAGASC_1__TGS04-29__bin.14 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_339__bin.21 94.82 1.75 119 2941169 66.94 53413 SAMN46068868 SRR31887330 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_339__bin.23 92.14 0.1 189 2408536 55.7 21204 SAMN46068868 SRR31887330 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_339__bin.27 99.96 1.25 93 2392101 43.87 64994 SAMN46068868 SRR31887330 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_339__bin.28 94.44 2.45 317 2555179 59.32 10985 SAMN46068868 SRR31887330 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__FO011_71775__bin.8 MASTER_WP4_UNINA_1__FO011_71775__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_339__bin.29 78.05 0.81 437 2322920 46.76 6527 SAMN46068868 SRR31887330 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 DeFilippisF_xxxx__DF_96__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_339__bin.4 97.48 1.15 230 3407780 55.28 26273 SAMN46068868 SRR31887330 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_339__bin.6 94.57 0.72 132 2262922 67.51 30231 SAMN46068868 SRR31887330 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_339__bin.8 82.71 0.82 65 1604464 37.64 39959 SAMN46068868 SRR31887330 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 MASTER_WP4_UNINA_1__PM012_71775__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_340__bin.1 91.39 0.72 226 2278844 46.93 13883 SAMN46068869 SRR31887328 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_388__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_340__bin.11 71.5 1.7 438 1835485 43.31 4694 SAMN46068869 SRR31887328 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 CM_UNINA_FFOOD__FFOOD_340__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_340__bin.12 89.07 0.07 184 2401763 55.76 20714 SAMN46068869 SRR31887328 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_340__bin.13 83.25 0.5 719 3749422 51.24 6186 SAMN46068869 SRR31887328 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967688__bin.2 CM_UNINA_FFOOD__FFOOD_340__bin.13 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_340__bin.14 99.98 0.85 163 2492498 67.28 36198 SAMN46068869 SRR31887328 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_340__bin.15 97.24 1.51 120 3050539 66.99 70756 SAMN46068869 SRR31887328 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_340__bin.16 97.96 1.81 205 2897925 44.93 20233 SAMN46068869 SRR31887328 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_340__bin.17 60.41 4.76 412 1428911 37.43 3893 SAMN46068869 SRR31887328 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 CM_UNINA_FFOOD__FFOOD_340__bin.17 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Ruoffia Ruoffia tabacinasalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_340__bin.2 73.65 0.1 96 1252940 39.66 22663 SAMN46068869 SRR31887328 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_340__bin.22 99.79 4.97 442 4289240 63.13 16541 SAMN46068869 SRR31887328 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_340__bin.24 96.44 0.8 112 2870819 67.75 44339 SAMN46068869 SRR31887328 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 FalardeauJ_2023__SRR20811223__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_340__bin.25 89.32 0.58 185 1527650 37.43 12548 SAMN46068869 SRR31887328 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KharnaiorP_2023__SRR22859379__bin.8 MASTER_WP4_UNINA_1__PU010_71775__bin.37 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_340__bin.26 92.1 1.02 94 2704960 46.68 41293 SAMN46068869 SRR31887328 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 DeFilippisF_xxxx__DF_96__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_340__bin.27 94.61 2.31 335 2285691 69.02 9365 SAMN46068869 SRR31887328 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 160 160 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_340__bin.4 99.94 0.29 45 2317607 43.85 141231 SAMN46068869 SRR31887328 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_340__bin.5 86.15 0.08 106 1379107 51.29 17929 SAMN46068869 SRR31887328 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_1__FO007_71775__bin.19 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_340__bin.7 88 0.72 67 1688132 37.62 40608 SAMN46068869 SRR31887328 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 MASTER_WP4_UNINA_1__PM012_71775__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_340__bin.8 95.81 1.49 181 2131054 38.92 20570 SAMN46068869 SRR31887328 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_340__bin.9 76.38 0.33 448 2022327 60.58 5201 SAMN46068869 SRR31887328 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0141-001_Corynebacterium_flavescens_CCUG_28791T ODFM-BA-A-0141-001_Corynebacterium_flavescens_CCUG_28791T Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium flavescens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_341__bin.11 86.8 0.2 109 2265686 46.8 33675 SAMN46068870 SRR31887327 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_341__bin.12 79.87 0.53 208 1383503 36.22 9309 SAMN46068870 SRR31887327 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_341__bin.2 85.08 0.22 116 2496167 46.83 30146 SAMN46068870 SRR31887327 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 MASTER_WP4_UNINA_1__PT008_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_341__bin.3 87.82 4.08 128 2024189 44.46 23366 SAMN46068870 SRR31887327 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_341__bin.7 68.71 0.86 58 2015521 46.37 56228 SAMN46068870 SRR31887327 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_96__bin.15 DeFilippisF_xxxx__DF_96__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parafarraginis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_341__bin.8 95.53 1.45 135 2497574 53.89 29568 SAMN46068870 SRR31887327 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic DeFilippisF_xxxx__DF_33__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_341__bin.9 68.19 0.16 32 1265169 39.07 59110 SAMN46068870 SRR31887327 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_342__bin.1 71.41 3.37 285 1895364 48.31 7533 SAMN46068871 SRR31887326 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 CM_UNINA_FFOOD__FFOOD_415__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_342__bin.3 83.85 0.06 200 2218688 46.97 15988 SAMN46068871 SRR31887326 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746929__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_342__bin.4 74.97 0.13 91 1255936 50.87 19071 SAMN46068871 SRR31887326 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_73__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_342__bin.5 64.84 2.08 100 1197157 36.21 20174 SAMN46068871 SRR31887326 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_342__bin.6 85.29 0.61 184 2425793 53.8 18398 SAMN46068871 SRR31887326 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic CM_UNINA_FFOOD__FFOOD_342__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_342__bin.7 99.98 0.72 28 2461280 43.7 179120 SAMN46068871 SRR31887326 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 LandisEA_2021__SRS5653155__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_342__bin.8 69.03 0.66 290 1709855 46.94 6493 SAMN46068871 SRR31887326 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_342__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_342__bin.9 81.93 0.25 83 1415951 53.27 23183 SAMN46068871 SRR31887326 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 MASTER_WP4_UNINA_1__PA207_73417__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_343__bin.1 91.78 3.01 405 2839068 41.29 9217 SAMN46068872 SRR31887325 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GR001_73417__bin.3 MASTER_WP4_UNINA_1__GR001_73417__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus raoultii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_343__bin.2 99.97 0.96 37 2485608 43.58 118328 SAMN46068872 SRR31887325 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 LandisEA_2021__SRS5653155__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_343__bin.3 84.76 0.7 85 1463669 50.94 22269 SAMN46068872 SRR31887325 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_73__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_343__bin.4 90.69 0.75 178 2829518 47.93 23992 SAMN46068872 SRR31887325 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 YangC_2021__SRR13259374__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_343__bin.6 98.96 1.65 172 1716374 36.43 15056 SAMN46068872 SRR31887325 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_343__bin.7 53.41 1.72 268 990085 38.54 3969 SAMN46068872 SRR31887325 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_343__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_344__bin.1 80.42 0.12 72 2437655 47.84 53579 SAMN46068873 SRR31887324 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_421__bin.4 CM_UNINA_FFOOD__FFOOD_421__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus zeae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_344__bin.4 67.53 0.09 35 1217314 39.25 66698 SAMN46068873 SRR31887324 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_344__bin.6 78.97 0.6 142 1477875 36.74 15017 SAMN46068873 SRR31887324 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_344__bin.7 73.61 0.26 65 1259466 50.82 27551 SAMN46068873 SRR31887324 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_345__bin.2 84.01 1.49 350 1615258 38.66 5649 SAMN46068874 SRR31887323 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_345__bin.4 91.7 2.25 203 1756955 36.32 12459 SAMN46068874 SRR31887323 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_346__bin.1 89.06 1.56 152 1596501 36.48 15812 SAMN46068875 SRR31887322 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_346__bin.2 81.17 0.62 129 2253230 53.79 27879 SAMN46068875 SRR31887322 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic DeFilippisF_xxxx__DF_33__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_346__bin.4 86.05 0.07 62 1592212 53.1 40338 SAMN46068875 SRR31887322 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 FontanaF_2023__SRR20746839__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_346__bin.5 79.46 1.18 76 1444279 50.51 25187 SAMN46068875 SRR31887322 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_346__bin.6 85.58 1.86 76 2669964 47.86 61780 SAMN46068875 SRR31887322 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_421__bin.4 CM_UNINA_FFOOD__FFOOD_421__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus zeae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_346__bin.7 81.91 0.13 121 2076597 46.71 27479 SAMN46068875 SRR31887322 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 AlvarezOrdonezA_xxxx__Q02-30__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_347__bin.13 76.97 1.75 216 1303689 51.17 7226 SAMN46068876 SRR31887321 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic CM_UNINA_FFOOD__FFOOD_347__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_347__bin.16 77.14 3.97 335 2383784 70.2 9918 SAMN46068876 SRR31887321 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q02-23__bin.9 CM_UNINA_FFOOD__FFOOD_347__bin.16 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium lacticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_347__bin.3 83.19 2.05 530 2064904 36.8 4765 SAMN46068876 SRR31887321 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_385__bin.9 CM_UNINA_FFOOD__FFOOD_347__bin.3 Bacteroidota;Bacteroidia;Flavobacteriales;Weeksellaceae;Kaistella Kaistella haifensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_347__bin.4 53.14 0.71 555 1493591 70.9 2746 SAMN46068876 SRR31887321 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB16-22__bin.7 CM_UNINA_FFOOD__FFOOD_347__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Kocuria Kocuria salsicia cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_347__bin.6 87.6 2.8 149 1599165 39.27 14839 SAMN46068876 SRR31887321 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_347__bin.7 86.51 0.01 86 2270993 46.65 37530 SAMN46068876 SRR31887321 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_347__bin.8 86.02 4.48 318 2562713 38.52 12468 SAMN46068876 SRR31887321 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MagliuloR_2024__SRR28235359__bin.3 CM_UNINA_FFOOD__FFOOD_347__bin.8 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_348__bin.1 99.47 0.29 82 1630261 39.21 32341 SAMN46068877 SRR31887320 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_348__bin.2 90.51 1.07 223 2552318 46.76 16482 SAMN46068877 SRR31887320 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FalardeauJ_2023__SRR20811272__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_348__bin.3 88.31 0.29 155 2536846 46.94 26360 SAMN46068877 SRR31887320 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_348__bin.4 99.31 1.53 169 1762417 36.09 15188 SAMN46068877 SRR31887320 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_348__bin.5 85.36 0.2 81 2075929 43.79 34041 SAMN46068877 SRR31887320 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_348__bin.6 79.59 0.62 145 1400780 51.07 12576 SAMN46068877 SRR31887320 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_350__bin.2 83.47 3.7 232 2372713 46.93 14281 SAMN46068879 SRR31887317 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_350__bin.3 87.84 0.85 198 2541046 53.68 17269 SAMN46068879 SRR31887317 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic DeFilippisF_xxxx__DF_33__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_350__bin.4 83.36 0.08 82 1461857 50.85 23503 SAMN46068879 SRR31887317 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_73__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_350__bin.5 81.54 1.78 138 1452573 36.45 15985 SAMN46068879 SRR31887317 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_351__bin.2 86.91 3.7 337 1842080 35.92 7434 SAMN46068880 SRR31887316 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_351__bin.4 99.72 0.28 77 2903418 46.7 53483 SAMN46068880 SRR31887316 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_351__bin.5 99.93 0.23 68 1771923 38.85 44492 SAMN46068880 SRR31887316 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_352__bin.1 87.01 0.22 103 2739859 46.75 39976 SAMN46068881 SRR31887315 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_352__bin.2 99.99 0.74 59 2452366 67.52 68505 SAMN46068881 SRR31887315 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_352__bin.3 82.98 0.37 89 1974830 44.67 32286 SAMN46068881 SRR31887315 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_352__bin.6 77.67 0.28 100 2006608 48.34 27642 SAMN46068881 SRR31887315 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 CM_UNINA_FFOOD__FFOOD_415__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_353__bin.12 76.9 0.23 123 1905259 46.93 22902 SAMN46068882 SRR31887314 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_353__bin.16 54.7 0.07 26 944088 39.7 44475 SAMN46068882 SRR31887314 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_353__bin.17 57.51 0.33 54 1011833 50.92 24999 SAMN46068882 SRR31887314 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic CM_UNINA_FFOOD__FFOOD_353__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_353__bin.3 93.5 0.6 215 2580222 55.67 19589 SAMN46068882 SRR31887314 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_353__bin.5 84.96 3.16 121 2467636 46.91 28353 SAMN46068882 SRR31887314 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_325__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_353__bin.7 52.11 1.14 153 975141 38.28 9232 SAMN46068882 SRR31887314 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 MASTER_WP4_UNINA_1__PM012_71775__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_353__bin.8 78.52 0.91 710 3165287 63.4 5614 SAMN46068882 SRR31887314 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 CM_UNINA_FFOOD__FFOOD_353__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_353__bin.9 53.7 3.78 595 1662263 67.69 2962 SAMN46068882 SRR31887314 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 CM_UNINA_FFOOD__FFOOD_353__bin.9 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_355__bin.2 90.83 3.35 187 1587201 36.43 11535 SAMN46068883 SRR31887313 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_355__bin.5 81.33 1.54 220 2261843 47.04 14380 SAMN46068883 SRR31887313 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_355__bin.6 86.88 2.03 154 2287136 48.18 20851 SAMN46068883 SRR31887313 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 CM_UNINA_FFOOD__FFOOD_415__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_355__bin.7 84.16 0.3 94 1478616 50.94 21459 SAMN46068883 SRR31887313 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_73__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_356__bin.10 68.17 2.57 71 1945688 46.34 41351 SAMN46068884 SRR31887312 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_96__bin.15 DeFilippisF_xxxx__DF_96__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parafarraginis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_356__bin.11 88.37 0.04 195 2274057 47.02 15326 SAMN46068884 SRR31887312 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 DeFilippisF_xxxx__DF_96__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_356__bin.2 81.22 0.24 96 1293013 51.41 16313 SAMN46068884 SRR31887312 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_356__bin.5 78.61 0.06 112 1857686 46.93 23289 SAMN46068884 SRR31887312 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_356__bin.6 50.71 0 35 902269 40 39278 SAMN46068884 SRR31887312 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_356__bin.8 72.94 0 104 1593041 44.04 24209 SAMN46068884 SRR31887312 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 LandisEA_2021__SRS5653155__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_356__bin.9 84.68 0.02 114 1379170 36.42 17278 SAMN46068884 SRR31887312 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_357__bin.2 90.51 0.22 131 2549585 46.86 27174 SAMN46068885 SRR31887311 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_357__bin.3 74.11 0.25 70 1276491 50.47 27042 SAMN46068885 SRR31887311 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_73__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_357__bin.4 90.31 0.11 174 2587977 46.55 20045 SAMN46068885 SRR31887311 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_357__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_357__bin.5 61.89 0.06 50 1419190 43.86 53358 SAMN46068885 SRR31887311 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 LandisEA_2021__SRS5653155__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_357__bin.6 84.7 1.95 147 1552213 36.61 14874 SAMN46068885 SRR31887311 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_358__bin.1 87.06 3.26 168 1714661 36.41 14085 SAMN46068886 SRR31887310 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_358__bin.2 62.34 0.05 346 1599560 47 5051 SAMN46068886 SRR31887310 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_358__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_359__bin.3 82.71 2.87 283 2305351 47.06 10770 SAMN46068887 SRR31887309 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_359__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_361__bin.1 74.76 0.13 56 1232129 51.15 29989 SAMN46068888 SRR31887308 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_361__bin.2 86.6 0.09 43 2676784 46.7 94047 SAMN46068888 SRR31887308 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_361__bin.3 93.42 0 176 2239453 46.94 16771 SAMN46068888 SRR31887308 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_361__bin.4 84 0.2 148 1517601 36.31 15058 SAMN46068888 SRR31887308 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_361__bin.5 90.47 0.15 103 1579701 39.18 22933 SAMN46068888 SRR31887308 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_363__bin.10 62.81 2.91 23 2159089 42.76 169750 SAMN46068889 SRR31887242 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_363__bin.10 CM_UNINA_FFOOD__FFOOD_363__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus fungorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_363__bin.2 78.33 2.2 211 2117353 47.01 12560 SAMN46068889 SRR31887242 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 DeFilippisF_xxxx__DF_96__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_363__bin.5 79.3 0.14 154 1380205 36.26 13925 SAMN46068889 SRR31887242 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_363__bin.7 79.86 0.55 68 1288022 51.14 24120 SAMN46068889 SRR31887242 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_73__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_364__bin.11 87.07 0.1 131 1437507 39.63 15621 SAMN46068890 SRR31887241 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_364__bin.12 79.29 0.81 71 2442857 48.02 50173 SAMN46068890 SRR31887241 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 CM_UNINA_FFOOD__FFOOD_418__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_364__bin.13 85.12 0.72 133 2161881 46.97 22771 SAMN46068890 SRR31887241 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_364__bin.4 84.72 2.41 147 1377850 36.45 14544 SAMN46068890 SRR31887241 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_364__bin.8 81.07 3.04 247 2415497 46.95 12329 SAMN46068890 SRR31887241 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_366__bin.10 84.73 0.57 90 1524677 50.67 25387 SAMN46068891 SRR31887240 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_366__bin.11 84.65 1.02 101 2146694 44.44 36834 SAMN46068891 SRR31887240 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_366__bin.14 80.94 0.39 98 2462178 47.78 38839 SAMN46068891 SRR31887240 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 YangC_2021__SRR13259374__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_366__bin.2 90.02 1.28 191 2462295 46.69 17218 SAMN46068891 SRR31887240 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_357__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_366__bin.6 91.36 3.54 211 1737400 36.52 13533 SAMN46068891 SRR31887240 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_366__bin.9 87.25 0.42 108 1560877 39.34 23115 SAMN46068891 SRR31887240 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_367__bin.4 78.63 3.04 372 2392761 47 8883 SAMN46068892 SRR31887239 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_367__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_368__bin.1 75.19 0.01 16 1296058 36.4 155693 SAMN46068893 SRR31887238 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS14-28__bin.1 MASTER_WP4_UNINA_1__AS212_71775__bin.12 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus uberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_368__bin.3 93.26 1.92 179 1718713 36.37 14775 SAMN46068893 SRR31887238 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_368__bin.4 89.24 0.03 221 2295411 46.89 13815 SAMN46068893 SRR31887238 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746833__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_368__bin.7 98.4 1.86 124 1604960 39.28 22298 SAMN46068893 SRR31887238 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_368__bin.8 72.1 2.66 508 1671522 35.16 3595 SAMN46068893 SRR31887238 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_178 CM_UNINA_FFOOD__FFOOD_368__bin.8 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_369__bin.1 94.97 0.21 104 1623134 39.27 23218 SAMN46068894 SRR31887237 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_369__bin.2 95.01 0.98 212 2670526 46.86 16781 SAMN46068894 SRR31887237 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_369__bin.5 77.88 3.21 500 1907502 34.86 4510 SAMN46068894 SRR31887237 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_178 CM_UNINA_FFOOD__FFOOD_369__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_370__bin.1 96.84 1.32 133 1640546 36.36 16119 SAMN46068895 SRR31887236 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_370__bin.3 86.74 0.99 153 1563842 39.12 14008 SAMN46068895 SRR31887236 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_370__bin.4 84.03 1.14 73 2661828 46.74 62653 SAMN46068895 SRR31887236 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_370__bin.5 77.07 0.49 63 2476031 47.82 74886 SAMN46068895 SRR31887236 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_421__bin.4 CM_UNINA_FFOOD__FFOOD_421__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus zeae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_370__bin.6 57.39 0.01 67 1582984 46.85 40458 SAMN46068895 SRR31887236 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_325__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_370__bin.7 82.13 0.44 76 1380341 50.71 25200 SAMN46068895 SRR31887236 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_371__bin.11 89.28 1.57 145 1533345 50.88 15028 SAMN46068896 SRR31887235 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_371__bin.2 84.84 0.04 121 1447825 36.48 16885 SAMN46068896 SRR31887235 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_371__bin.6 78.24 0.29 72 1356822 53.38 29271 SAMN46068896 SRR31887235 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 MASTER_WP4_UNINA_1__PA207_73417__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_371__bin.7 97.55 0.66 109 1628501 39.2 23466 SAMN46068896 SRR31887235 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_371__bin.9 98.73 1.32 280 2552355 34.72 15462 SAMN46068896 SRR31887235 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_372__bin.1 94.75 0.73 60 2818402 46.74 67882 SAMN46068897 SRR31887234 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_372__bin.2 79.17 0.49 113 1367408 50.93 15894 SAMN46068897 SRR31887234 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_372__bin.3 89.27 0 125 2387856 46.78 29319 SAMN46068897 SRR31887234 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_372__bin.5 99.77 1.73 196 1889145 36.29 15078 SAMN46068897 SRR31887234 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_372__bin.6 83.15 0.16 88 1520647 53.22 26700 SAMN46068897 SRR31887234 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 MASTER_WP4_UNINA_1__PA207_73417__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_372__bin.8 84.74 0.56 301 1558086 39.08 6908 SAMN46068897 SRR31887234 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_373__bin.1 91.57 0.02 131 2423307 46.82 30080 SAMN46068898 SRR31887233 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_2__P2635__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_373__bin.2 74.31 1.26 481 2174213 48 5201 SAMN46068898 SRR31887233 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 CM_UNINA_FFOOD__FFOOD_373__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_374__bin.2 81.71 0.77 86 1510157 50.54 27551 SAMN46068899 SRR31887231 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_374__bin.4 94.05 2.87 161 1721714 36.34 16284 SAMN46068899 SRR31887231 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_374__bin.5 89.52 0.53 103 1579574 39.31 24104 SAMN46068899 SRR31887231 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_375__bin.1 60.48 1.35 356 1507195 44.55 4760 SAMN46068900 SRR31887230 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 CM_UNINA_FFOOD__FFOOD_375__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_375__bin.11 85.33 0.03 136 1572599 36.37 16598 SAMN46068900 SRR31887230 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_375__bin.2 90.41 0.18 79 1556668 39.3 27463 SAMN46068900 SRR31887230 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_375__bin.4 69.4 3.64 49 2093539 46.18 58908 SAMN46068900 SRR31887230 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_96__bin.15 DeFilippisF_xxxx__DF_96__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parafarraginis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_375__bin.5 50.38 1.17 195 874393 53.54 5119 SAMN46068900 SRR31887230 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 CM_UNINA_FFOOD__FFOOD_375__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_375__bin.6 82.77 0.48 83 1474493 50.73 23225 SAMN46068900 SRR31887230 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_377__bin.1 92.59 0.8 95 1655766 50.39 27751 SAMN46068901 SRR31887229 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_377__bin.2 99.54 2.98 185 1843840 36.57 15058 SAMN46068901 SRR31887229 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_377__bin.3 94.64 0.43 99 1609968 39.22 24392 SAMN46068901 SRR31887229 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_378__bin.12 72.08 0.58 62 1240389 50.92 27772 SAMN46068902 SRR31887228 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_378__bin.3 84.41 1.8 207 2186239 47.13 14035 SAMN46068902 SRR31887228 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_378__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_378__bin.4 70.41 0.03 110 1309282 36.26 17150 SAMN46068902 SRR31887228 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_378__bin.5 87.65 0.09 165 2290374 46.8 19943 SAMN46068902 SRR31887228 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_378__bin.7 84.11 3.77 74 2406614 46.09 52283 SAMN46068902 SRR31887228 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_96__bin.15 DeFilippisF_xxxx__DF_96__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parafarraginis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_378__bin.8 78.19 0.63 42 1362780 39.51 44495 SAMN46068902 SRR31887228 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_378__bin.9 99.94 0.31 26 1820597 42.35 96663 SAMN46068902 SRR31887228 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 MASTER_WP4_UNINA_1__PA011_73417__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_380__bin.1 51.55 0.14 80 905821 36.2 15811 SAMN46068903 SRR31887227 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_380__bin.3 82.43 0.34 85 2160680 46.76 41494 SAMN46068903 SRR31887227 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_380__bin.4 93.36 0.25 71 1661168 38.98 33491 SAMN46068903 SRR31887227 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_380__bin.5 82.14 0.51 68 1492042 50.65 27851 SAMN46068903 SRR31887227 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_380__bin.6 92.93 1.53 125 2551866 46.95 30680 SAMN46068903 SRR31887227 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 MASTER_WP4_UNINA_1__CS007_71775__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_381__bin.1 90.72 1.62 210 1786086 36.43 13263 SAMN46068904 SRR31887226 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_381__bin.11 84.03 0.26 99 1525476 50.65 21322 SAMN46068904 SRR31887226 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_73__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_381__bin.13 83.19 2.23 381 2395395 53.83 7997 SAMN46068904 SRR31887226 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic CM_UNINA_FFOOD__FFOOD_381__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_381__bin.4 97.68 2.29 151 1624113 39.25 19998 SAMN46068904 SRR31887226 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_381__bin.9 82.86 0.07 119 2226125 46.85 30047 SAMN46068904 SRR31887226 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_382__bin.11 89.4 0.56 234 2380187 46.86 13820 SAMN46068905 SRR31887225 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_382__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_382__bin.13 87.04 3.47 439 1981351 36.7 5595 SAMN46068905 SRR31887225 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 CM_UNINA_FFOOD__FFOOD_382__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_382__bin.3 97.33 0.61 96 1601693 39.28 29482 SAMN46068905 SRR31887225 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_382__bin.4 95.61 0.93 94 1633066 50.55 24686 SAMN46068905 SRR31887225 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_382__bin.9 85.94 0.69 266 2682160 46.43 15574 SAMN46068905 SRR31887225 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_383__bin.1 73.38 0.55 76 1316966 53.14 27462 SAMN46068906 SRR31887224 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 MASTER_WP4_UNINA_1__PA207_73417__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_383__bin.2 68.34 0.37 85 1857061 46.81 33492 SAMN46068906 SRR31887224 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_383__bin.4 65.67 0.77 226 1833536 48.41 9808 SAMN46068906 SRR31887224 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 MASTER_WP4_UNINA_1__GR111_73417__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_383__bin.6 71.52 0.16 89 1246285 50.83 15939 SAMN46068906 SRR31887224 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_383__bin.8 70.69 2.07 296 2034258 46.82 8106 SAMN46068906 SRR31887224 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_383__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_383__bin.9 72.23 0.02 95 1179939 36.4 16665 SAMN46068906 SRR31887224 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_384__bin.10 84.37 0.73 122 2367254 46.86 27011 SAMN46068907 SRR31887223 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 DeFilippisF_xxxx__DF_96__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_384__bin.2 90.6 1.93 152 1617657 36.42 16122 SAMN46068907 SRR31887223 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_384__bin.6 67.66 0.1 29 1157905 39.58 62160 SAMN46068907 SRR31887223 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_384__bin.7 85.58 0.02 96 2152662 48.21 36320 SAMN46068907 SRR31887223 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 CM_UNINA_FFOOD__FFOOD_415__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_384__bin.8 74.25 0.48 60 1961842 46.78 56394 SAMN46068907 SRR31887223 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_384__bin.9 83.55 1.18 71 1442566 51.03 28204 SAMN46068907 SRR31887223 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_385__bin.3 81.71 0.12 80 1354615 51.18 24730 SAMN46068908 SRR31887222 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_73__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_385__bin.5 85.96 3.52 242 2506493 46.99 13592 SAMN46068908 SRR31887222 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_385__bin.6 83.71 0.17 158 1502733 36.47 12686 SAMN46068908 SRR31887222 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_385__bin.9 100 0.52 26 2501335 36.74 132418 SAMN46068908 SRR31887222 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_385__bin.9 CM_UNINA_FFOOD__FFOOD_385__bin.9 Bacteroidota;Bacteroidia;Flavobacteriales;Weeksellaceae;Kaistella Kaistella haifensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_386__bin.2 87.79 2.7 88 2739667 46.68 44648 SAMN46068909 SRR31887220 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_386__bin.4 93.36 3.14 167 1786563 36.65 15306 SAMN46068909 SRR31887220 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_386__bin.5 69.78 0.48 412 1991611 48.45 5717 SAMN46068909 SRR31887220 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_421__bin.4 CM_UNINA_FFOOD__FFOOD_421__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus zeae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_386__bin.6 79.66 0.37 80 1388429 53.13 29102 SAMN46068909 SRR31887220 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 MASTER_WP4_UNINA_1__PA207_73417__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_386__bin.7 93.1 0.45 96 1590518 39.29 23071 SAMN46068909 SRR31887220 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_386__bin.8 76.79 0.6 69 1320977 50.85 27572 SAMN46068909 SRR31887220 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_387__bin.1 78.24 0.33 104 1309022 50.94 15804 SAMN46068910 SRR31887219 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_73__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_387__bin.2 81.59 0.45 278 2366161 46.91 11100 SAMN46068910 SRR31887219 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_387__bin.3 88.06 0.15 184 2167301 47.01 16682 SAMN46068910 SRR31887219 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746833__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_387__bin.6 86.18 0.31 306 2468011 53.86 10221 SAMN46068910 SRR31887219 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic CM_UNINA_FFOOD__FFOOD_387__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_388__bin.4 79.14 2.86 513 2055933 36.81 4744 SAMN46068911 SRR31887218 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_385__bin.9 CM_UNINA_FFOOD__FFOOD_388__bin.4 Bacteroidota;Bacteroidia;Flavobacteriales;Weeksellaceae;Kaistella Kaistella haifensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_388__bin.5 82.13 1.92 142 2456660 46.71 23477 SAMN46068911 SRR31887218 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 MASTER_WP4_UNINA_1__CS007_71775__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_388__bin.6 84.62 0.45 89 1470503 50.76 23203 SAMN46068911 SRR31887218 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_388__bin.7 90.52 0.2 230 2264933 46.97 12997 SAMN46068911 SRR31887218 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_388__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_389__bin.1 85.37 2.51 501 2093388 67.47 4798 SAMN46068912 SRR31887217 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 CM_UNINA_FFOOD__FFOOD_389__bin.1 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_389__bin.2 74.42 3.85 347 1935089 47.02 6969 SAMN46068912 SRR31887217 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_389__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_389__bin.3 92.33 2.48 186 2542956 46.76 21481 SAMN46068912 SRR31887217 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_389__bin.4 82.29 0.65 115 2103547 48.41 25221 SAMN46068912 SRR31887217 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 CM_UNINA_FFOOD__FFOOD_415__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_389__bin.6 84.64 0.68 89 1478084 50.94 24893 SAMN46068912 SRR31887217 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_389__bin.7 86.16 2.04 201 1704297 36.46 13848 SAMN46068912 SRR31887217 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_389__bin.8 76.69 1.32 206 1246754 53.41 7805 SAMN46068912 SRR31887217 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 MASTER_WP4_UNINA_1__PA207_73417__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_390__bin.1 76.94 0 83 2045036 48.31 38540 SAMN46068913 SRR31887216 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 CM_UNINA_FFOOD__FFOOD_415__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_390__bin.2 82.83 0.15 102 1407535 51.14 17407 SAMN46068913 SRR31887216 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_390__bin.3 90.5 1.2 163 2535361 46.62 24725 SAMN46068913 SRR31887216 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_390__bin.4 100 0.3 118 2530026 67.38 34195 SAMN46068913 SRR31887216 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MASTER_WP4_FFoQSI_2__VB05-27__bin.5 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_390__bin.5 84.64 0.1 63 2426629 46.9 55921 SAMN46068913 SRR31887216 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_390__bin.7 85.72 0.28 83 1521160 39.5 27864 SAMN46068913 SRR31887216 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_390__bin.8 81.15 0 88 1466722 53.3 31815 SAMN46068913 SRR31887216 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 FontanaF_2023__SRR20746839__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_390__bin.9 91.96 2.78 152 1683367 36.33 15813 SAMN46068913 SRR31887216 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_391__bin.2 99.96 0.32 57 1713135 38.92 56369 SAMN46068914 SRR31887215 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_391__bin.3 93.4 0.66 96 1651568 50.34 23384 SAMN46068914 SRR31887215 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_391__bin.4 94.59 2.35 185 1745255 36.6 15285 SAMN46068914 SRR31887215 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_392__bin.1 87.43 0.22 83 1669556 50.29 36840 SAMN46068915 SRR31887214 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_392__bin.2 86.36 2.33 188 1570652 36.29 12574 SAMN46068915 SRR31887214 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_392__bin.3 99.96 0.24 56 1715155 39.05 49411 SAMN46068915 SRR31887214 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_393__bin.2 94.89 2.96 258 1876192 36.55 10742 SAMN46068916 SRR31887213 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS14-28__bin.1 MASTER_WP4_UNINA_1__AS212_71775__bin.12 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus uberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_393__bin.3 85.69 0.08 141 2349457 46.74 24985 SAMN46068916 SRR31887213 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746833__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_393__bin.4 99.86 0.4 63 2298021 35.07 51388 SAMN46068916 SRR31887213 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_393__bin.5 83.08 0.37 161 1481807 50.65 12876 SAMN46068916 SRR31887213 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_393__bin.6 85.79 0.77 212 1619541 36.24 10319 SAMN46068916 SRR31887213 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_393__bin.7 99.67 4.5 157 2605319 43.57 32374 SAMN46068916 SRR31887213 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 LandisEA_2021__SRS5653155__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_394__bin.1 82.54 0.35 81 1439856 50.93 23681 SAMN46068917 SRR31887212 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_394__bin.2 82.53 0.52 37 1495899 39.26 62942 SAMN46068917 SRR31887212 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_394__bin.3 91.1 2.33 180 2492081 47.08 17064 SAMN46068917 SRR31887212 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_394__bin.4 83.65 0.2 117 1466251 36.49 16119 SAMN46068917 SRR31887212 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_395__bin.1 92.08 2.07 165 1748275 36.25 16162 SAMN46068918 SRR31887211 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_395__bin.11 83.03 0.39 163 1518083 53.22 12027 SAMN46068918 SRR31887211 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 MASTER_WP4_UNINA_1__PA207_73417__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_395__bin.2 88.8 0.03 87 2406146 46.68 40522 SAMN46068918 SRR31887211 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_395__bin.3 91.28 1.6 66 1638313 39.13 44476 SAMN46068918 SRR31887211 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_395__bin.5 78.48 0.43 65 1473653 50.3 35259 SAMN46068918 SRR31887211 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_396__bin.2 54.9 0.66 477 1551652 46.59 3528 SAMN46068919 SRR31887209 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_396__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_396__bin.4 82.45 1.41 146 1638241 36.32 17520 SAMN46068919 SRR31887209 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_396__bin.5 99.95 0.62 25 1842836 42.3 101263 SAMN46068919 SRR31887209 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 MASTER_WP4_UNINA_1__PA011_73417__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_396__bin.6 84.5 0.32 92 1444698 51.06 22920 SAMN46068919 SRR31887209 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_396__bin.7 85.74 3.27 375 2388162 47.03 8280 SAMN46068919 SRR31887209 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_396__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_396__bin.8 98.89 0.37 61 1676806 39.07 45205 SAMN46068919 SRR31887209 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_396__bin.9 76.88 0.18 78 1358562 53.23 24975 SAMN46068919 SRR31887209 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 MASTER_WP4_UNINA_1__PA207_73417__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_397__bin.2 82.55 0.17 72 1434254 50.82 29003 SAMN46068920 SRR31887208 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_397__bin.5 100 0.03 85 3000333 35.53 71335 SAMN46068920 SRR31887208 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_397__bin.5 CM_UNINA_FFOOD__FFOOD_397__bin.5 Bacillota;Clostridia;Clostridiales;Clostridiaceae;Clostridium_B Clostridium B sp003497125 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_397__bin.6 87.86 0.21 44 1695417 52.92 53589 SAMN46068920 SRR31887208 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 FontanaF_2023__SRR20746839__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_397__bin.7 95.05 1.62 183 2420857 67.46 21665 SAMN46068920 SRR31887208 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_397__bin.8 90.8 2.56 140 2193398 46.86 21941 SAMN46068920 SRR31887208 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_325__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_405__bin.12 100 2.43 608 4718321 66.32 10996 SAMN46068819 SRR31887157 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_405__bin.12 CM_UNINA_FFOOD__FFOOD_405__bin.12 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Xanthomonadaceae;Stenotrophomonas Stenotrophomonas maltophilia A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_405__bin.4 52.65 4.9 358 1127638 39.22 3298 SAMN46068819 SRR31887157 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.11 CM_UNINA_FFOOD__FFOOD_405__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A carnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_405__bin.7 90.2 0.39 86 1615069 39.13 26956 SAMN46068819 SRR31887157 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_405__bin.8 88.25 3 162 2061061 34.9 21091 SAMN46068819 SRR31887157 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_406__bin.2 83.69 0.39 194 1980465 35.35 14417 SAMN46068820 SRR31887156 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_406__bin.3 83.41 0.09 201 1506842 36.35 10344 SAMN46068820 SRR31887156 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_406__bin.4 99.88 4.77 108 2548442 34.91 46857 SAMN46068820 SRR31887156 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_407__bin.3 59.45 0.04 33 1018936 39.18 41791 SAMN46068821 SRR31887155 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_408__bin.1 76.85 0.29 76 1305108 50.83 22447 SAMN46068928 SRR31887200 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_408__bin.2 79.42 0.26 76 1353434 52.94 28906 SAMN46068928 SRR31887200 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 MASTER_WP4_UNINA_1__PA207_73417__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_408__bin.3 85.01 0.97 133 1452043 36.68 17481 SAMN46068928 SRR31887200 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_408__bin.5 100 0.22 66 2597602 67.51 61000 SAMN46068928 SRR31887200 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 CM_UNINA_FFOOD__FFOOD_408__bin.5 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_408__bin.6 66.43 2.98 701 2071123 30.59 3131 SAMN46068928 SRR31887200 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0172-001_Clostridium_tyrobutyricum_FAM22553 CM_UNINA_FFOOD__FFOOD_408__bin.6 Bacillota;Clostridia;Clostridiales;Clostridiaceae;Clostridium_B Clostridium B tyrobutyricum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_408__bin.7 93.89 0.09 47 2854737 46.75 99676 SAMN46068928 SRR31887200 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_408__bin.8 89.15 0.76 208 2320968 46.97 16153 SAMN46068928 SRR31887200 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_325__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_409__bin.1 91.29 0.4 86 1551270 50.61 25060 SAMN46068929 SRR31887198 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_409__bin.2 88.74 0.12 49 1592416 39.17 50695 SAMN46068929 SRR31887198 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_409__bin.3 84.09 0.3 207 2174158 46.96 14716 SAMN46068929 SRR31887198 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_325__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_409__bin.5 52.59 0.18 111 1034005 35.98 14689 SAMN46068929 SRR31887198 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_410__bin.1 99.85 0.54 176 2459956 46.77 23595 SAMN46068930 SRR31887197 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_410__bin.10 62.81 0.2 105 1132928 36.42 15252 SAMN46068930 SRR31887197 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 CM_UNINA_FFOOD__FFOOD_410__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_410__bin.11 83.67 0.9 197 1816879 40.19 14225 SAMN46068930 SRR31887197 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 FontanaF_2023__SRR20746866__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_410__bin.12 52.29 0.1 239 837403 53.68 3790 SAMN46068930 SRR31887197 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 CM_UNINA_FFOOD__FFOOD_410__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_410__bin.13 96.43 0.17 95 1898402 35.47 44515 SAMN46068930 SRR31887197 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_178 MAG_178 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_410__bin.15 99.84 2.37 152 2837154 53.41 28016 SAMN46068930 SRR31887197 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic DeFilippisF_xxxx__DF_33__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_410__bin.2 99.89 0.69 75 2381729 67.41 54809 SAMN46068930 SRR31887197 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 CM_UNINA_FFOOD__FFOOD_410__bin.2 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_410__bin.4 85.75 0.17 53 1616520 39.15 50307 SAMN46068930 SRR31887197 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_410__bin.6 81.55 0.5 138 1381764 50.84 14011 SAMN46068930 SRR31887197 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_410__bin.9 79.92 4.56 582 2134685 34.61 4340 SAMN46068930 SRR31887197 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 CM_UNINA_FFOOD__FFOOD_410__bin.9 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_411__bin.1 92.9 2.83 192 1762259 36.52 14175 SAMN46068931 SRR31887196 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_411__bin.2 98.93 0.7 188 1756051 39.07 14448 SAMN46068931 SRR31887196 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_411__bin.3 100 0.25 91 2559049 67.34 43711 SAMN46068931 SRR31887196 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MASTER_WP4_FFoQSI_2__VB05-27__bin.5 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_411__bin.4 81.16 0.9 88 1489175 50.54 24502 SAMN46068931 SRR31887196 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_411__bin.5 74.73 2.22 642 2237204 32.61 3869 SAMN46068931 SRR31887196 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 CM_UNINA_FFOOD__FFOOD_411__bin.5 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_411__bin.6 96.81 0.01 258 2474222 46.65 13383 SAMN46068931 SRR31887196 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_411__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_412__bin.1 94.59 0.78 152 2687452 46.97 43629 SAMN46068932 SRR31887195 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_412__bin.2 65.58 1.16 305 1148740 51.09 4198 SAMN46068932 SRR31887195 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_412__bin.4 77.8 1.8 119 1448553 36.44 21014 SAMN46068932 SRR31887195 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_412__bin.5 73.94 4.37 212 1214120 53.32 6980 SAMN46068932 SRR31887195 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 MASTER_WP4_UNINA_1__PA207_73417__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_413__bin.1 88.87 0.17 143 1565354 36.64 15691 SAMN46068933 SRR31887194 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_413__bin.2 78.34 1.85 81 1311297 50.93 24025 SAMN46068933 SRR31887194 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_413__bin.3 78.66 0.03 78 2182854 46.66 47629 SAMN46068933 SRR31887194 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 DeFilippisF_xxxx__DF_96__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_413__bin.4 99.77 0.26 50 1672224 39.07 56371 SAMN46068933 SRR31887194 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_413__bin.5 85.95 0.16 111 2295717 46.74 31881 SAMN46068933 SRR31887194 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_413__bin.6 70.04 0.04 77 1771635 48.1 29241 SAMN46068933 SRR31887194 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 CM_UNINA_FFOOD__FFOOD_415__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_414__bin.1 87.92 0.33 219 2339799 46.81 14619 SAMN46068934 SRR31887193 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_325__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_414__bin.10 82.12 1.34 90 1401936 39.47 23414 SAMN46068934 SRR31887193 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_414__bin.2 98.51 0.13 203 2379059 34.93 19347 SAMN46068934 SRR31887193 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_414__bin.4 55.89 1.72 95 1058080 36.1 22728 SAMN46068934 SRR31887193 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 MASTER_WP4_UNINA_1__PA207_73417__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_414__bin.5 84.26 0.7 169 1481714 50.94 12827 SAMN46068934 SRR31887193 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_414__bin.6 82.59 0.28 81 1491261 53.06 28083 SAMN46068934 SRR31887193 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 MASTER_WP4_UNINA_1__PA207_73417__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_414__bin.8 65.52 3.85 497 2013888 53.79 4644 SAMN46068934 SRR31887193 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic CM_UNINA_FFOOD__FFOOD_414__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_415__bin.1 98.53 1.1 78 3019783 55.4 56745 SAMN46068935 SRR31887192 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.1 CM_UNINA_FFOOD__FFOOD_415__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_415__bin.2 64.97 0.62 460 1438706 53.97 3290 SAMN46068935 SRR31887192 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic CM_UNINA_FFOOD__FFOOD_415__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_415__bin.3 69.43 0.46 136 1307879 36.34 16189 SAMN46068935 SRR31887192 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_415__bin.4 98.72 0.03 99 2564857 48.01 40864 SAMN46068935 SRR31887192 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 CM_UNINA_FFOOD__FFOOD_415__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_415__bin.6 88.39 0.45 90 1514332 50.83 29018 SAMN46068935 SRR31887192 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_415__bin.7 91.43 0.24 243 2679920 46.61 18279 SAMN46068935 SRR31887192 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746833__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_415__bin.8 99.79 0.64 105 1667620 39.09 26371 SAMN46068935 SRR31887192 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_416__bin.1 58.95 0.91 342 1341212 40.36 4346 SAMN46068936 SRR31887191 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB694__bin.6 CM_UNINA_FFOOD__FFOOD_416__bin.1 Bacillota;Bacilli;Staphylococcales;Salinicoccaceae;Jeotgalicoccus NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_416__bin.10 83.97 0.81 78 1486725 50.92 25841 SAMN46068936 SRR31887191 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_416__bin.11 72.36 4.67 767 2467997 33.23 3525 SAMN46068936 SRR31887191 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_319__bin.7 CM_UNINA_FFOOD__FFOOD_416__bin.11 Bacillota;Bacilli;Bacillales_D;Amphibacillaceae;Pseudogracilibacillus Pseudogracilibacillus sp035301645 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_416__bin.6 77.68 0.47 95 1417262 39.32 23082 SAMN46068936 SRR31887191 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_416__bin.8 94.36 1.1 177 1709739 36.53 15224 SAMN46068936 SRR31887191 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_416__bin.9 88.55 0.19 283 2170247 43.82 10867 SAMN46068936 SRR31887191 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_417__bin.1 81.85 0.26 122 2300104 46.7 36589 SAMN46068937 SRR31887190 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_417__bin.2 86.63 0.77 95 1489258 51 21563 SAMN46068937 SRR31887190 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_417__bin.3 93.39 1.55 174 1754383 36.29 15291 SAMN46068937 SRR31887190 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_417__bin.4 86.57 4.56 192 1715914 42.33 12926 SAMN46068937 SRR31887190 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 MASTER_WP4_UNINA_1__PA011_73417__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_417__bin.5 99.82 1.35 152 2527944 53.75 23145 SAMN46068937 SRR31887190 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic DeFilippisF_xxxx__DF_33__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_417__bin.6 99.92 0.31 46 1706990 38.96 66850 SAMN46068937 SRR31887190 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_417__bin.7 99.32 0.19 139 2864010 46.77 32300 SAMN46068937 SRR31887190 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_418__bin.1 99.94 2.48 92 2092603 39.12 41250 SAMN46068938 SRR31887189 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 WalshL_xxxx__V9__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_418__bin.10 86.71 0.49 81 2557450 46.76 50052 SAMN46068938 SRR31887189 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 MASTER_WP4_UNINA_1__CS007_71775__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_418__bin.11 78.08 4.61 542 1859206 36.81 3809 SAMN46068938 SRR31887189 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_385__bin.9 CM_UNINA_FFOOD__FFOOD_418__bin.11 Bacteroidota;Bacteroidia;Flavobacteriales;Weeksellaceae;Kaistella Kaistella haifensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_418__bin.12 91.04 2.87 130 2795633 48.1 36956 SAMN46068938 SRR31887189 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 CM_UNINA_FFOOD__FFOOD_418__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_418__bin.14 85.74 4.1 136 2304325 46.87 25453 SAMN46068938 SRR31887189 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_418__bin.15 85.9 0.87 100 1587929 39.06 32508 SAMN46068938 SRR31887189 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_418__bin.16 82.32 1.49 154 1542628 36.55 14911 SAMN46068938 SRR31887189 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_418__bin.3 83.45 1.65 115 1366166 51.22 19132 SAMN46068938 SRR31887189 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic CM_UNINA_FFOOD__FFOOD_418__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_418__bin.8 100 0.18 41 1953398 38.27 159139 SAMN46068938 SRR31887189 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_418__bin.8 CM_UNINA_FFOOD__FFOOD_418__bin.8 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus petauri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_418__bin.9 92.38 3.69 353 3063271 41.45 15058 SAMN46068938 SRR31887189 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-26__bin.7 CM_UNINA_FFOOD__FFOOD_418__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter johnsonii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_419__bin.1 90.49 0.03 90 2415299 48.08 46795 SAMN46068939 SRR31887187 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 CM_UNINA_FFOOD__FFOOD_415__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_419__bin.2 84.3 0.39 44 1540576 39.12 50876 SAMN46068939 SRR31887187 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_419__bin.3 82.16 1.54 127 1438876 36.57 16403 SAMN46068939 SRR31887187 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_419__bin.4 86.29 0.14 44 1447078 50.44 55978 SAMN46068939 SRR31887187 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_62__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_419__bin.5 81.66 0.23 81 1454562 53.24 26351 SAMN46068939 SRR31887187 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 MASTER_WP4_UNINA_1__PA207_73417__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_420__bin.1 86.9 1.91 180 2286868 46.94 19500 SAMN46068940 SRR31887186 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746833__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_420__bin.2 80.08 0.4 32 1967668 43.88 118437 SAMN46068940 SRR31887186 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 LandisEA_2021__SRS5653155__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_420__bin.3 93.82 4.68 316 1928321 36.39 8521 SAMN46068940 SRR31887186 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_420__bin.5 85.18 4.56 493 2822112 46.42 6907 SAMN46068940 SRR31887186 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_420__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_420__bin.6 57.82 1.87 494 1644114 45.77 3600 SAMN46068940 SRR31887186 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_96__bin.15 CM_UNINA_FFOOD__FFOOD_420__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parafarraginis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_420__bin.7 61.82 0.35 34 1211860 39.15 64527 SAMN46068940 SRR31887186 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_421__bin.1 86.3 1.5 143 1594568 36.67 18366 SAMN46068941 SRR31887185 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_421__bin.2 90.62 0.19 44 1580983 39.18 50542 SAMN46068941 SRR31887185 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_421__bin.3 100 0.6 146 2535502 67.57 29128 SAMN46068941 SRR31887185 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 CM_UNINA_FFOOD__FFOOD_408__bin.5 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_421__bin.4 90.64 0.48 48 2796449 47.77 94423 SAMN46068941 SRR31887185 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_421__bin.4 CM_UNINA_FFOOD__FFOOD_421__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus zeae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_421__bin.5 96.12 0.39 98 1654085 50.7 26072 SAMN46068941 SRR31887185 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__O-25.1__bin.29 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_421__bin.6 87.54 0.06 49 1688991 36.28 90366 SAMN46068941 SRR31887185 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS14-28__bin.1 MASTER_WP4_UNINA_1__AS212_71775__bin.12 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus uberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_421__bin.7 52.41 1.1 270 927974 53.37 3574 SAMN46068941 SRR31887185 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 CM_UNINA_FFOOD__FFOOD_421__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_422__bin.2 84.36 1.69 120 2217807 46.79 27761 SAMN46068942 SRR31887184 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_325__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_422__bin.3 89.84 0.41 199 1503250 39.46 9908 SAMN46068942 SRR31887184 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_422__bin.4 56.13 0.15 15 943153 43.06 163183 SAMN46068942 SRR31887184 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 MASTER_WP4_FFoQSI_2__VB16-28__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_422__bin.6 88.26 0.86 84 2632897 46.77 52883 SAMN46068942 SRR31887184 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_422__bin.8 63.24 0.86 64 1206998 50.27 27637 SAMN46068942 SRR31887184 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_423__bin.1 99.92 0.33 85 1706746 39.05 38032 SAMN46068943 SRR31887183 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_423__bin.2 87.23 0 151 2179753 46.95 21433 SAMN46068943 SRR31887183 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_423__bin.3 91.09 0.27 128 2784489 46.61 31988 SAMN46068943 SRR31887183 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_423__bin.4 99.48 1.85 152 1712544 36.42 15286 SAMN46068943 SRR31887183 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_423__bin.5 84.1 0.14 146 2274508 53.82 22890 SAMN46068943 SRR31887183 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic DeFilippisF_xxxx__DF_33__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_423__bin.6 77.01 0.98 75 1368710 50.59 28585 SAMN46068943 SRR31887183 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_424__bin.2 69.08 0.76 251 1117736 53.75 5459 SAMN46068944 SRR31887182 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 CM_UNINA_FFOOD__FFOOD_424__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_424__bin.3 91.21 0.35 86 1535134 39.39 29615 SAMN46068944 SRR31887182 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_424__bin.7 67.83 1.53 252 1187968 41 5671 SAMN46068944 SRR31887182 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_424__bin.7 CM_UNINA_FFOOD__FFOOD_424__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus vaginalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_425__bin.1 85.69 0.45 600 5170931 61.09 12356 SAMN46068945 SRR31887181 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_28__bin.4 DeFilippisF_xxxx__DF_28__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E proteolytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_425__bin.6 57.61 0.18 40 1006964 39.76 36582 SAMN46068945 SRR31887181 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_425__bin.9 99.98 0 9 1860169 42.29 391458 SAMN46068945 SRR31887181 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 CM_UNINA_FFOOD__FFOOD_425__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_426__bin.1 59.34 0.24 36 1003499 39.71 34634 SAMN46068946 SRR31887180 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_426__bin.4 98.17 2.64 68 1430108 37.58 32798 SAMN46068946 SRR31887180 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__PM002_71775__bin.14 MASTER_WP4_UNINA_1__PM002_71775__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kribbianus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_426__bin.5 99.93 0.6 89 2190906 44.61 35153 SAMN46068946 SRR31887180 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_426__bin.6 84.96 0.12 177 2282603 46.79 18834 SAMN46068946 SRR31887180 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_426__bin.7 85.66 0.16 278 2224196 47.29 9779 SAMN46068946 SRR31887180 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 MASTER_WP4_UNINA_1__CS007_71775__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_427__bin.3 72.99 1.92 493 1922419 47.02 4281 SAMN46068947 SRR31887179 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_427__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_427__bin.7 51.48 0.14 29 875632 39.51 55163 SAMN46068947 SRR31887179 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_427__bin.8 99.7 1.41 210 2300229 43.94 18135 SAMN46068947 SRR31887179 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_428__bin.6 99.92 1.27 107 1742646 38.84 27912 SAMN46068948 SRR31887306 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_428__bin.7 68.52 3.49 293 1219224 40.87 4563 SAMN46068948 SRR31887306 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_424__bin.7 CM_UNINA_FFOOD__FFOOD_428__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus vaginalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_429__bin.1 70.81 0.55 423 1692620 43.81 4500 SAMN46068949 SRR31887304 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 CM_UNINA_FFOOD__FFOOD_429__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_429__bin.4 54.26 0.07 96 988177 36.92 15205 SAMN46068949 SRR31887304 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_430__bin.8 91.7 0.35 78 1473680 43.91 27124 SAMN46068950 SRR31887303 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_430__bin.9 92.62 0.52 142 2262675 46.83 25055 SAMN46068950 SRR31887303 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_431__bin.2 91.49 0.12 119 1608628 53.35 18734 SAMN46068951 SRR31887302 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 FontanaF_2023__SRR20746839__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_431__bin.3 83.43 0.5 125 1406746 51.09 15692 SAMN46068951 SRR31887302 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_431__bin.4 57.37 0.11 51 981582 39.77 25255 SAMN46068951 SRR31887302 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_432__bin.2 50.63 0.26 41 830643 40.02 27486 SAMN46068952 SRR31887301 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_432__bin.3 81.1 0.11 66 1322502 51.01 27641 SAMN46068952 SRR31887301 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_432__bin.5 98.95 0.96 43 1662580 43.37 61029 SAMN46068952 SRR31887301 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months CM_UNINA_FFOOD__FFOOD_432__bin.7 61.19 0.02 95 1045033 36.78 17976 SAMN46068952 SRR31887301 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746829__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718190__bin.1 69.5 0.36 104 1601836 34.67 21192 SAMEA114069774 ERR11718190 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718190__bin.2 78.2 2.59 116 1876038 35.73 25580 SAMEA114069774 ERR11718190 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. AlvarezOrdonezA_xxxx__Q05-22__bin.4 DecadtH_2024__ERR11718200__bin.1 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718191__bin.3 53.08 0.42 146 1143948 35.2 9077 SAMEA114069775 ERR11718191 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718192__bin.5 53.48 1.11 83 1262623 35.48 23160 SAMEA114069776 ERR11718192 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. AlvarezOrdonezA_xxxx__Q05-22__bin.4 DecadtH_2024__ERR11718200__bin.1 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718192__bin.6 57.28 0.17 125 1381325 34.97 14504 SAMEA114069776 ERR11718192 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718194__bin.10 56.98 0.74 93 1425574 35.8 23332 SAMEA114069778 ERR11718194 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. AlvarezOrdonezA_xxxx__Q05-22__bin.4 DecadtH_2024__ERR11718200__bin.1 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718194__bin.9 63.06 0.24 95 1369582 35 18642 SAMEA114069778 ERR11718194 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718195__bin.3 68.5 1.25 146 1676644 34.7 16157 SAMEA114069779 ERR11718195 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718195__bin.6 54.86 0.13 401 1177410 35.54 3089 SAMEA114069779 ERR11718195 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. AlvarezOrdonezA_xxxx__Q05-22__bin.4 DecadtH_2024__ERR11718195__bin.6 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718196__bin.7 51.02 0.15 123 1208098 35.7 14133 SAMEA114069780 ERR11718196 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. AlvarezOrdonezA_xxxx__Q05-22__bin.4 DecadtH_2024__ERR11718200__bin.1 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718197__bin.1 82.65 3.1 265 1585569 39.24 7814 SAMEA114069781 ERR11718197 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718197__bin.11 84.79 0.05 115 1756552 40.6 23084 SAMEA114069781 ERR11718197 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. DeFilippisF_xxxx__DF_5__bin.15 DecadtH_2024__ERR11718197__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus rennini cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718197__bin.9 54.28 0.42 131 1134366 38.95 11443 SAMEA114069781 ERR11718197 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. WalshL_xxxx__V9__bin.2 DecadtH_2024__ERR11718197__bin.9 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718198__bin.1 63.68 3.59 140 1536381 35.42 14598 SAMEA114069782 ERR11718198 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 DecadtH_2024__ERR11718198__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718198__bin.4 77.53 0.5 145 1863894 35.77 18152 SAMEA114069782 ERR11718198 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. AlvarezOrdonezA_xxxx__Q05-22__bin.4 DecadtH_2024__ERR11718200__bin.1 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718198__bin.5 51.62 0 58 1054495 39.99 24827 SAMEA114069782 ERR11718198 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. DeFilippisF_xxxx__DF_5__bin.15 DecadtH_2024__ERR11718197__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus rennini cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718198__bin.6 62.02 1.88 107 1368700 35.1 16362 SAMEA114069782 ERR11718198 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718199__bin.2 59.67 0.21 221 1315763 40.81 6697 SAMEA114069783 ERR11718199 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. DeFilippisF_xxxx__DF_5__bin.15 DecadtH_2024__ERR11718197__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus rennini cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718200__bin.1 88.51 0.85 219 2079913 35.67 13049 SAMEA114069784 ERR11718200 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. AlvarezOrdonezA_xxxx__Q05-22__bin.4 DecadtH_2024__ERR11718200__bin.1 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718200__bin.4 73.23 0.55 90 1666034 40.46 28705 SAMEA114069784 ERR11718200 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. DeFilippisF_xxxx__DF_5__bin.15 DecadtH_2024__ERR11718197__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus rennini cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718200__bin.9 83.53 1.53 56 1521143 39.3 36181 SAMEA114069784 ERR11718200 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718201__bin.2 75.99 0.65 267 1555158 40.66 6803 SAMEA114069785 ERR11718201 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. DeFilippisF_xxxx__DF_5__bin.15 DecadtH_2024__ERR11718197__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus rennini cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718201__bin.3 85.55 0.16 63 1570772 39.28 35443 SAMEA114069785 ERR11718201 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718201__bin.4 68.55 3.13 177 1775524 34.77 16311 SAMEA114069785 ERR11718201 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718202__bin.3 67.07 0.13 71 1565066 40.57 32088 SAMEA114069786 ERR11718202 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. DeFilippisF_xxxx__DF_5__bin.15 DecadtH_2024__ERR11718197__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus rennini cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718202__bin.4 54.76 0.59 102 1340109 34.48 18316 SAMEA114069786 ERR11718202 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. MAG_501 FalardeauJ_2023__SRR20811174__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718202__bin.7 78.85 1.08 120 1880249 35.7 23333 SAMEA114069786 ERR11718202 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. AlvarezOrdonezA_xxxx__Q05-22__bin.4 DecadtH_2024__ERR11718200__bin.1 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718203__bin.1 53.51 1.17 127 1288034 34.66 13233 SAMEA114069787 ERR11718203 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718203__bin.6 85.98 0.22 69 1590602 39.22 33783 SAMEA114069787 ERR11718203 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718204__bin.5 69.77 1.72 112 1821338 35.72 23331 SAMEA114069788 ERR11718204 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. AlvarezOrdonezA_xxxx__Q05-22__bin.4 DecadtH_2024__ERR11718200__bin.1 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718204__bin.6 87.34 0.16 50 1585404 39.22 42357 SAMEA114069788 ERR11718204 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718204__bin.8 76.16 0.59 68 1636285 40.33 36039 SAMEA114069788 ERR11718204 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. DeFilippisF_xxxx__DF_5__bin.15 DecadtH_2024__ERR11718197__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus rennini cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718206__bin.1 73.28 2.92 289 1367959 39.28 5567 SAMEA114069790 ERR11718206 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718207__bin.2 72.72 0.56 82 1823474 35.8 35758 SAMEA114069791 ERR11718207 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. AlvarezOrdonezA_xxxx__Q05-22__bin.4 DecadtH_2024__ERR11718200__bin.1 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718208__bin.1 66.63 1.23 247 1164494 39.41 5254 SAMEA114069792 ERR11718208 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DecadtH_2024__ERR11718208__bin.4 85.15 1.79 181 1990439 35.67 16654 SAMEA114069792 ERR11718208 Belgium PRJEB64331 ERP149479 NCBI Decadt H, Vermote L, Díaz-Muñoz C, Weckx S, De Vuyst L. Decarboxylase activity of the non-starter lactic acid bacterium Loigolactobacillus rennini gives crack defects in Gouda cheese through the production of γ-aminobutyric acid. Appl Environ Microbiol. 2024 Feb 21;90(2):e0165523. doi: 10.1128/aem.01655-23. AlvarezOrdonezA_xxxx__Q05-22__bin.4 DecadtH_2024__ERR11718200__bin.1 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_100__bin.11 96.98113208 1.682389937 94 2094248 38.77 32411 SAMN40695466 SRR28523330 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.11 DeFilippisF_xxxx__DF_100__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A carnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_100__bin.17 98.36065574 1.548269581 77 2437138 34.88 59574 SAMN40695466 SRR28523330 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.17 DeFilippisF_xxxx__DF_100__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Marinilactibacillus Marinilactibacillus psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_100__bin.20 50.19034537 0.274725275 147 1260404 42.12 11478 SAMN40695466 SRR28523330 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 181 MAG_643 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_100__bin.4 71.11183923 0.286697248 195 2406404 55.72 16650 SAMN40695466 SRR28523330 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_114__bin.22 MASTER_WP4_UNINA_1__FO005_71775__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_100__bin.3 72.67149994 3.65652725 617 2012485 36 3603 SAMN40695466 SRR28523330 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We4_bin.full.28 DeFilippisF_xxxx__DF_100__bin.3 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;Mesonia Mesonia profundi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_100__bin.1 96.9266055 1.949541284 134 4149702 63.87 63962 SAMN40695466 SRR28523330 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.1 DeFilippisF_xxxx__DF_100__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Specibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_100__bin.2 90.16077474 1.124951343 223 3163950 40.37 33876 SAMN40695466 SRR28523330 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MacoriG_2019__CS_R33__bin.1 DeFilippisF_xxxx__DF_18__bin.7 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio hibernica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_100__bin.18 96.48889961 2.350788288 226 3688920 39.71 28201 SAMN40695466 SRR28523330 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_632 DeFilippisF_xxxx__DF_100__bin.18 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_100__bin.19 95.19350811 4.962546816 319 3014098 37.44 14933 SAMN40695466 SRR28523330 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__TA012_71775__bin.5 MASTER_WP4_UNINA_1__TA012_71775__bin.5 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus_D Vagococcus D salmoninarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_100__bin.12 82.8045126 2.9143898 185 2402083 34.84 24919 SAMN40695466 SRR28523330 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.12 DeFilippisF_xxxx__DF_100__bin.12 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Carnobacterium_A NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_101__bin.20 59.95297806 1.724137931 414 1570310 34.8 4460 SAMN40695471 SRR28523243 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 DeFilippisF_xxxx__DF_101__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_101__bin.22 88.08962642 2.821869489 262 1334144 37.93 6121 SAMN40695471 SRR28523243 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic DeFilippisF_xxxx__DF_101__bin.22 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_101__bin.8 89.22721205 2.559457451 317 2271051 46.9 8269 SAMN40695471 SRR28523243 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 DeFilippisF_xxxx__DF_101__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_101__bin.15 69.27899687 3.448275862 409 1809077 35.44 5546 SAMN40695471 SRR28523243 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 CM_UNINA_FFOOD__FFOOD_311__bin.9 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_101__bin.24 93.00558495 2.932098765 283 2457954 45.09 10817 SAMN40695471 SRR28523243 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_CSIC_1__P2249_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_101__bin.5 97.77272727 1.060606061 73 1861139 63.8 46173 SAMN40695471 SRR28523243 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_296__bin.3 CM_UNINA_FFOOD__FFOOD_296__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_101__bin.6 93.4375 0.494791667 30 1357544 42.39 71220 SAMN40695471 SRR28523243 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_101__bin.10 77.72222222 2.625 45 930768 43.83 29090 SAMN40695471 SRR28523243 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_101__bin.13 89.5625 0.625 77 2241652 46.04 37722 SAMN40695471 SRR28523243 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_96__bin.15 DeFilippisF_xxxx__DF_96__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parafarraginis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_101__bin.14 92.131917 2.445652174 225 2325568 43.17 15065 SAMN40695471 SRR28523243 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 DeFilippisF_xxxx__DF_101__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_101__bin.18 97.29559748 0.754716981 189 2138834 35.58 21653 SAMN40695471 SRR28523243 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_178 MAG_178 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_101__bin.11 90 1.961858389 81 2115263 39 56892 SAMN40695471 SRR28523243 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 DeFilippisF_xxxx__DF_101__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_101__bin.1 92.10069444 0.677083333 150 2023744 49.67 19209 SAMN40695471 SRR28523243 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_003946095.1_ASM394609v1_genomic DeFilippisF_xxxx__DS_68__bin.16 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus lindianensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_102__bin.13 93.2379349 1.102292769 252 1487168 38.01 6970 SAMN40695472 SRR28523232 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_102__bin.18 74.50866576 0.912018235 376 1601740 46.93 4821 SAMN40695472 SRR28523232 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 DeFilippisF_xxxx__DF_102__bin.18 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_102__bin.9 72.99549051 0.483870968 179 1461049 35.55 12230 SAMN40695472 SRR28523232 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_102__bin.5 94.23868313 3.395061728 198 2698071 45.04 17790 SAMN40695472 SRR28523232 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_CSIC_1__P2249_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_102__bin.17 94.6875 0.833333333 144 2496045 42.54 27382 SAMN40695472 SRR28523232 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_61__bin.3 DeFilippisF_xxxx__DF_61__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus dabitei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_102__bin.19 61.37931034 2.586206897 476 1688878 38.45 3947 SAMN40695472 SRR28523232 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MagliuloR_2024__SRR28235359__bin.3 DeFilippisF_xxxx__DF_102__bin.19 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_102__bin.2 73.3125 1.25 89 2245231 46.13 32016 SAMN40695472 SRR28523232 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_96__bin.15 DeFilippisF_xxxx__DF_96__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parafarraginis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_102__bin.7 51.72413793 0 281 1025422 42.94 4066 SAMN40695472 SRR28523232 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 DeFilippisF_xxxx__DF_102__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_102__bin.6 90.90484885 2.037735849 147 1997152 35.55 30805 SAMN40695472 SRR28523232 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_178 MAG_178 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_102__bin.8 78.44827586 3.793103448 263 1709482 36.91 8102 SAMN40695472 SRR28523232 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308520__bin.4 YouL_2022__SRR13308524__bin.34 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_102__bin.3 98.36235955 0.314339219 58 2746400 32.75 171483 SAMN40695472 SRR28523232 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0136-001_Staphylococcus_aureus_18SBCL679 DeFilippisF_xxxx__DF_102__bin.3 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus aureus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_104__bin.12 97.24893488 0.471698113 56 2337508 34.9 102130 SAMN40695475 SRR28523135 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_104__bin.5 92.39789196 0.18115942 139 2295992 46.72 30340 SAMN40695475 SRR28523135 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_104__bin.6 54.50888192 0 461 1575873 47.06 3737 SAMN40695475 SRR28523135 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 DeFilippisF_xxxx__DF_104__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_104__bin.4 95.50561798 0.374531835 72 1820147 37.31 44566 SAMN40695475 SRR28523135 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_104__bin.4 DeFilippisF_xxxx__DF_104__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus macedonicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_104__bin.7 61.7816092 1.724137931 246 1519138 37.56 7810 SAMN40695475 SRR28523135 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 FontanaF_2023__SRR20746855__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_104__bin.1 82.73654917 1.94214876 242 1256698 51.39 5711 SAMN40695475 SRR28523135 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_104__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_104__bin.8 99.0625 0 124 2176911 44.48 25195 SAMN40695475 SRR28523135 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_104__bin.11 97.15383286 2.137927106 531 3303086 30.37 8785 SAMN40695475 SRR28523135 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_104__bin.11 DeFilippisF_xxxx__DF_104__bin.11 Bacillota;Clostridia;Clostridiales;Clostridiaceae;Clostridium_B Clostridium B tyrobutyricum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_104__bin.3 100 0 196 3602316 68.85 32894 SAMN40695475 SRR28523135 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. C-R09.bin.5 DeFilippisF_xxxx__DF_104__bin.3 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Acidipropionibacterium Acidipropionibacterium acidipropionici cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_109__bin.6 99.0625 0.625 49 2383697 42.5 114223 SAMN40695480 SRR28523220 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_109__bin.4 99.02597403 0 196 1835057 36.5 12807 SAMN40695480 SRR28523220 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_11__bin.28 91.48097826 0.458074534 193 2696515 46.34 20049 SAMN40695481 SRR28523209 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_11__bin.24 71.4244186 1.308139535 440 2289626 63.38 6710 SAMN40695481 SRR28523209 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 KastmanEK_2016__CSB907__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_11__bin.10 93.17738791 2.553606238 635 3900021 70.49 8979 SAMN40695481 SRR28523209 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__771_Tarentaise__bin.3 DeFilippisF_xxxx__DF_11__bin.10 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium tyrofermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_11__bin.19 53.73563218 1.149425287 486 1250218 34.66 2571 SAMN40695481 SRR28523209 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_11__bin.19 DeFilippisF_xxxx__DF_11__bin.19 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Marinilactibacillus Marinilactibacillus psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_11__bin.36 56.73229408 0.841750842 511 1421255 68.78 2875 SAMN40695481 SRR28523209 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 160 DeFilippisF_xxxx__DF_11__bin.36 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_11__bin.31 71.48136013 0.860091743 217 2660399 56.24 17294 SAMN40695481 SRR28523209 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_114__bin.22 MASTER_WP4_UNINA_1__FO005_71775__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_11__bin.21 94.22018349 4.017584098 483 3408744 64.38 9580 SAMN40695481 SRR28523209 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259376__bin.8 DeFilippisF_xxxx__DF_11__bin.21 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Arthrobacter_H Arthrobacter H rhombi A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_11__bin.1 75.84377611 4.415204678 1236 4470349 68.8 4091 SAMN40695481 SRR28523209 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_4__bin.22 DeFilippisF_xxxx__DF_11__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_11__bin.20 71.70846395 1.724137931 443 3010741 40.34 8447 SAMN40695481 SRR28523209 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MacoriG_2019__CS_R33__bin.1 DeFilippisF_xxxx__DF_11__bin.20 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio hibernica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_11__bin.12 88.7193387 0.459919545 257 2893343 43.1 17533 SAMN40695481 SRR28523209 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811274__bin.6 KastmanEK_2016__CSB694__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861365 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_11__bin.32 89.83144997 3.125 415 3080915 54.11 10130 SAMN40695481 SRR28523209 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.full.31 DeFilippisF_xxxx__DF_85__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_11__bin.27 55.35730546 1.898510972 510 1792589 58.29 3778 SAMN40695481 SRR28523209 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_11__bin.27 DeFilippisF_xxxx__DF_11__bin.27 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Cobetia Cobetia crustatorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_11__bin.15 60.66749243 0.481695568 629 2147054 64.74 3819 SAMN40695481 SRR28523209 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_11__bin.15 DeFilippisF_xxxx__DF_11__bin.15 Actinomycetota;Actinomycetes;Actinomycetales;Cellulomonadaceae;Paraoerskovia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_113__bin.8 99.375 1.875 146 2216677 46.27 22882 SAMN40695484 SRR28523176 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_113__bin.1 99.62264151 0.283018868 48 2486283 34.87 142725 SAMN40695484 SRR28523176 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_113__bin.9 75.04112235 2.098429952 406 1598499 47.02 4345 SAMN40695484 SRR28523176 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 DeFilippisF_xxxx__DF_113__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_113__bin.3 99.73544974 0.176366843 98 1784991 39.16 33955 SAMN40695484 SRR28523176 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_114__bin.9 94.67348304 2.75415255 522 5787008 61.02 15988 SAMN40695489 SRR28523078 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. OlgaP_2019__SRR11909887__bin.1 DeFilippisF_xxxx__DF_114__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E shahriarae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_114__bin.24 51.74418605 0 19 1647510 63.08 174588 SAMN40695489 SRR28523078 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 DeFilippisF_xxxx__DF_114__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_114__bin.13 57.29973819 2.380952381 97 1645794 42.8 26891 SAMN40695489 SRR28523078 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS01-22__bin.24 DeFilippisF_xxxx__DF_114__bin.13 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter aquimaris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_114__bin.6 51.72599969 0.343406593 82 1245187 47.48 20010 SAMN40695489 SRR28523078 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2584__bin.5 DeFilippisF_xxxx__DF_114__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter celer cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_114__bin.22 93.54521625 0.458715596 107 3414093 56.5 48044 SAMN40695489 SRR28523078 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_114__bin.22 DeFilippisF_xxxx__DF_114__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_114__bin.3 86.11597862 2.01951952 409 2962476 40.05 9704 SAMN40695489 SRR28523078 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811282__bin.3 FontanaF_2023__SRR20746930__bin.2 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_114__bin.2 96.82320442 2.394106814 282 2497501 36.15 12937 SAMN40695489 SRR28523078 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001703515.1_ASM170351v1_genomic GCF_001703515.1_ASM170351v1_genomic Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_115__bin.4 65 0 359 1407056 34.87 4416 SAMN40695490 SRR28523067 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 DeFilippisF_xxxx__DF_115__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_115__bin.32 86.76100629 2.704402516 181 1816828 40.55 14632 SAMN40695490 SRR28523067 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 FontanaF_2023__SRR20746866__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_115__bin.27 98.9965812 0.446969697 41 4709115 48.13 251838 SAMN40695490 SRR28523067 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811137__bin.9 FalardeauJ_2023__SRR20811137__bin.9 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia paralvei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_115__bin.14 91.42209373 1.352201258 227 2322827 35.13 17287 SAMN40695490 SRR28523067 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_115__bin.6 94.3372498 0.96692112 134 2393479 37.81 45038 SAMN40695490 SRR28523067 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_418__bin.8 CM_UNINA_FFOOD__FFOOD_418__bin.8 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus petauri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_115__bin.1 93.08176101 3.144654088 182 1984087 35.4 18037 SAMN40695490 SRR28523067 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_178 MAG_178 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_115__bin.22 91.88311688 0.081168831 121 1575509 50.72 21039 SAMN40695490 SRR28523067 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_115__bin.24 73.03370787 0 39 1089726 44.01 45241 SAMN40695490 SRR28523067 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_115__bin.29 88.75830013 4.71196024 104 2000743 40.85 47022 SAMN40695490 SRR28523067 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_115__bin.29 DeFilippisF_xxxx__DF_115__bin.29 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus oralis BG cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_117__bin.6 95.83333333 2.407407407 492 2980629 32.61 8150 SAMN40695476 SRR28523328 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 DeFilippisF_xxxx__DF_117__bin.6 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_117__bin.9 96.42857143 0 155 1699133 36.46 18000 SAMN40695476 SRR28523328 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_117__bin.5 80.25150014 3.729712859 96 1581717 37.37 41093 SAMN40695476 SRR28523328 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 MASTER_WP4_UNINA_1__PM012_71775__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_117__bin.1 92.8125 0 129 2066598 44.62 25214 SAMN40695476 SRR28523328 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_117__bin.11 92.87859285 1.177536232 176 2463728 48.18 21218 SAMN40695476 SRR28523328 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 CM_UNINA_FFOOD__FFOOD_415__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_118__bin.11 61.67711599 1.724137931 216 2072821 34.82 17180 SAMN40695491 SRR28523290 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_118__bin.13 100 0.529100529 22 1937847 37.54 275238 SAMN40695491 SRR28523290 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_118__bin.8 94.69149453 2.828519386 406 2701273 34.65 9856 SAMN40695491 SRR28523290 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.17 MASTER_WP4_TEAGASC_1__TGS04-30__bin.24 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Marinilactibacillus Marinilactibacillus psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_118__bin.3 81.25624302 2.485037731 117 1756364 36.15 29299 SAMN40695491 SRR28523290 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_118__bin.3 DeFilippisF_xxxx__DF_118__bin.3 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_118__bin.9 93.8 0.1 640 25328406 49.14 60988 SAMN40695491 SRR28523290 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_118__bin.5 82.9 0 1450 10607696 36.06 9278 SAMN40695491 SRR28523290 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_119__bin.2 77.32402189 3.122641509 347 1478390 40.59 5275 SAMN40695492 SRR28523279 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 MagliuloR_2024__SRR28235352__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_121__bin.14 84.1622575 1.870748299 307 1505926 38.25 5982 SAMN40695473 SRR28523157 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_121__bin.19 90.49052397 1.63647343 235 2168045 47.01 13200 SAMN40695473 SRR28523157 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 DeFilippisF_xxxx__DF_121__bin.19 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_121__bin.26 75.78369906 0 263 2026871 35.37 11668 SAMN40695473 SRR28523157 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_121__bin.18 95.98765432 2.674897119 136 2828556 44.83 33402 SAMN40695473 SRR28523157 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_121__bin.7 98.828125 1.444444444 36 2293646 42.56 97429 SAMN40695473 SRR28523157 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_121__bin.15 67.53093826 2.173913043 273 1563553 43.08 6682 SAMN40695473 SRR28523157 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 DeFilippisF_xxxx__DF_121__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_121__bin.4 93.64779874 1.92109777 224 1989897 35.6 12526 SAMN40695473 SRR28523157 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_178 MAG_178 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_121__bin.3 67.89968652 2.298850575 214 1784984 38.98 10875 SAMN40695473 SRR28523157 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 DeFilippisF_xxxx__DF_101__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_121__bin.17 97.57258448 3.555846422 90 2211341 38.28 43946 SAMN40695473 SRR28523157 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_121__bin.6 99.50842697 2.444489032 31 2730122 32.66 309231 SAMN40695473 SRR28523157 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0136-001_Staphylococcus_aureus_18SBCL679 MASTER_WP4_UNINA_1__PB007_73417__bin.9 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus aureus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_121__bin.5 75.54347826 0 13 1037487 39.82 99061 SAMN40695473 SRR28523157 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_5__bin.15 DeFilippisF_xxxx__DF_5__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus rennini cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_122__bin.4 64.02821317 1.724137931 476 1412883 34.81 3081 SAMN40695482 SRR28523198 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 DeFilippisF_xxxx__DF_122__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_122__bin.9 60.4834685 0.254730713 85 961002 39.94 15912 SAMN40695482 SRR28523198 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_122__bin.8 91.97530864 2.469135802 30 2296912 45 120848 SAMN40695482 SRR28523198 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 AlvarezOrdonezA_xxxx__Q06-27__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_122__bin.7 98.37662338 0.649350649 196 1818896 36.33 13644 SAMN40695482 SRR28523198 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_122__bin.6 68.00694444 1.458333333 441 1833066 43.88 4801 SAMN40695482 SRR28523198 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 LandisEA_2021__SRS5653155__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_122__bin.2 67.39130435 0 15 1621247 46.85 162722 SAMN40695482 SRR28523198 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_123__bin.1 90.56603774 0.283018868 27 2221747 34.84 191281 SAMN40695483 SRR28523187 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_123__bin.4 56.52734456 0.145560408 99 903550 39.54 13400 SAMN40695483 SRR28523187 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_123__bin.5 92.47433575 1.586575133 263 2176474 46.97 11431 SAMN40695483 SRR28523187 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_123__bin.2 82.85363275 1.948051948 318 1525390 36.38 6189 SAMN40695483 SRR28523187 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746829__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_123__bin.3 89.93506494 0.216450216 80 1505252 50.67 25352 SAMN40695483 SRR28523187 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_62__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_15__bin.13 85.70754717 0.377358491 176 2059654 34.83 17747 SAMN40695494 SRR28523267 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_15__bin.4 75 2.586206897 294 1640332 35.65 6911 SAMN40695494 SRR28523267 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_15__bin.11 99.47089947 0 67 1750474 39.28 36971 SAMN40695494 SRR28523267 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_15__bin.5 61.0462963 0 255 1120161 32.64 5254 SAMN40695494 SRR28523267 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 DeFilippisF_xxxx__DF_15__bin.5 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_15__bin.9 95.6 0.1 304 26627158 49 159425 SAMN40695494 SRR28523267 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_15__bin.7 77.2 0.5 166 9601640 45.98 84425 SAMN40695494 SRR28523267 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-22__bin.21 MASTER_WP4_FFoQSI_2__VB10-22__bin.21 Ascomycota;Saccharomycetes;Saccharomycetales;unknown;unknown unknown cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_16__bin.11 72.23028274 0.3125 413 1821937 46.18 5016 SAMN40695485 SRR28523123 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 DeFilippisF_xxxx__DF_16__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_16__bin.12 59.7492163 0 137 1150974 35.32 13134 SAMN40695485 SRR28523123 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_16__bin.3 93.93115942 0.815217391 182 2214255 46.92 20009 SAMN40695485 SRR28523123 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_16__bin.7 82.163009400000007 0 148 1981495 35.56 22513 SAMN40695485 SRR28523123 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_16__bin.16 94.5625 0 36 1554220 43.76 63697 SAMN40695485 SRR28523123 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_16__bin.1 85.54014168 0 194 1398052 51.02 9931 SAMN40695485 SRR28523123 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_62__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_16__bin.5 95.09645778 0.799489449 427 4123551 51.18 15456 SAMN40695485 SRR28523123 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967688__bin.2 DeFilippisF_xxxx__DF_16__bin.5 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_16__bin.4 79.75272339 1.257159206 757 4321632 59.19 8889 SAMN40695485 SRR28523123 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_16__bin.4 DeFilippisF_xxxx__DF_16__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E iridis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_17__bin.6 70.68965517 1.724137931 171 1400680 33.19 12438 SAMN40695495 SRR28523266 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0167-001_Staphylococcus_succinus_BC15 MASTER_WP4_UNINA_1__SR008_71775__bin.14 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus succinus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_18__bin.22 97.26775956 2.641165756 138 2285892 34.89 27110 SAMN40695467 SRR28523329 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.17 DeFilippisF_xxxx__DF_100__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Marinilactibacillus Marinilactibacillus psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_18__bin.10 97.6146789 2.102446483 116 4141663 63.9 66314 SAMN40695467 SRR28523329 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.1 DeFilippisF_xxxx__DF_100__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Specibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_18__bin.7 93.28326079 0.682712685 99 3282437 40.33 69587 SAMN40695467 SRR28523329 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MacoriG_2019__CS_R33__bin.1 DeFilippisF_xxxx__DF_18__bin.7 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio hibernica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_18__bin.18 82.00384016 2.609797297 548 2949795 39.64 6647 SAMN40695467 SRR28523329 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_632 DeFilippisF_xxxx__DF_100__bin.18 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_18__bin.17 92.08578563 3.651685393 353 2998250 37.4 11723 SAMN40695467 SRR28523329 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__TA012_71775__bin.5 MASTER_WP4_UNINA_1__TA012_71775__bin.5 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus_D Vagococcus D salmoninarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_18__bin.6 75.4 0 2426 10148523 35.9 4793 SAMN40695467 SRR28523329 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 DeFilippisF_xxxx__DF_18__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_23__bin.3 95.61237374 1.410123967 447 2443873 34.43 7873 SAMN40695496 SRR28523264 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_23__bin.5 58.62068966 0 17 1298167 46.68 125295 SAMN40695496 SRR28523264 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_23__bin.4 97.07792208 0 147 1642034 36.51 18102 SAMN40695496 SRR28523264 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_23__bin.7 67.86417786 2.436773753 259 882610 52.21 3686 SAMN40695496 SRR28523264 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_23__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_25__bin.7 94.9 0.1 257 26363286 49.01 184036 SAMN40695499 SRR28523261 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_25__bin.8 96.3 0.1 459 11497158 36.25 60247 SAMN40695499 SRR28523261 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_26__bin.7 59.06300912 0.378787879 71 1207919 35.01 29712 SAMN40695503 SRR28523257 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_26__bin.8 98.41269841 0 89 1390128 38.03 24654 SAMN40695503 SRR28523257 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_FFoQSI_3__VB09-26__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_26__bin.6 94.99547101 0.067934783 141 2465549 46.69 30933 SAMN40695503 SRR28523257 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 DeFilippisF_xxxx__DF_26__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_26__bin.5 53.16091954 0 446 1709986 35.2 4440 SAMN40695503 SRR28523257 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 DeFilippisF_xxxx__DF_26__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_26__bin.9 94.5 0.2 1373 33108557 48.41 40762 SAMN40695503 SRR28523257 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2560__bin.1 MASTER_WP4_CSIC_2__P2560__bin.1 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium sp SPG F1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_26__bin.4 97.7 0.1 339 11652931 36.26 80424 SAMN40695503 SRR28523257 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_28__bin.10 97.01086957 2.396245059 136 1658893 42.35 17569 SAMN40695505 SRR28523255 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_28__bin.13 75.00766337 0.094339623 177 1615824 34.94 14536 SAMN40695505 SRR28523255 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_28__bin.3 75.75304782 0.408805031 115 1522233 35.63 21995 SAMN40695505 SRR28523255 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_28__bin.11 93.76929012 3.8139329810000002 459 3369592 43.93 10344 SAMN40695505 SRR28523255 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_28__bin.2 94.59933183 2.830615942 306 2518224 43.06 11385 SAMN40695505 SRR28523255 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 DeFilippisF_xxxx__DF_28__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_28__bin.5 90.94339623 2.968147697 208 2214526 38.58 15327 SAMN40695505 SRR28523255 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.11 DeFilippisF_xxxx__DF_28__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A carnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_28__bin.12 75.37382417 1.298701299 256 1269718 51.04 5596 SAMN40695505 SRR28523255 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_62__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_28__bin.4 93.73233198 1.041666667 534 5763395 60.68 16933 SAMN40695505 SRR28523255 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_28__bin.4 DeFilippisF_xxxx__DF_28__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E proteolytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_29__bin.6 87.48804325 1.408816802 144 1378253 39.62 14499 SAMN40695507 SRR28523252 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_29__bin.1 83.79310345 2.664576803 255 2270124 46.64 12565 SAMN40695507 SRR28523252 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746833__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_29__bin.5 99.38271605 2.777777778 25 3059207 44.75 276521 SAMN40695507 SRR28523252 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_29__bin.2 97.77777778 1.666666667 221 2886484 32.71 26304 SAMN40695507 SRR28523252 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_29__bin.4 76.45540208 0 265 1279368 51.1 5615 SAMN40695507 SRR28523252 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_29__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_30__bin.2 62.06896552 0 44 1276073 39.06 39594 SAMN40695508 SRR28523251 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 DeFilippisF_xxxx__DF_30__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_30__bin.6 96.45559603 1.705780632 362 2343619 46.81 8385 SAMN40695508 SRR28523251 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 DeFilippisF_xxxx__DF_30__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_30__bin.7 70.12987013 0 149 1225780 36.75 10949 SAMN40695508 SRR28523251 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_30__bin.1 93.00783076 2.550841515 437 2449481 42.93 7789 SAMN40695508 SRR28523251 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 DeFilippisF_xxxx__DF_30__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_30__bin.10 99.07407407 0.617283951 86 1853199 37.08 52764 SAMN40695508 SRR28523251 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KharnaiorP_2023__SRR22859379__bin.8 DeFilippisF_xxxx__DF_30__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_30__bin.3 99.0625 0 101 2237351 44.61 39020 SAMN40695508 SRR28523251 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_31__bin.4 86.01892285 0.124766064 156 1367595 39.52 13549 SAMN40695511 SRR28523248 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_31__bin.1 94.25423062 3.915781189 378 1692361 36.1 5346 SAMN40695511 SRR28523248 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 MASTER_WP4_UNINA_1__PR006_71775__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_31__bin.8 80.96937244 3.308364544 510 1977480 36.56 4482 SAMN40695511 SRR28523248 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_104__bin.4 DeFilippisF_xxxx__DF_31__bin.8 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus macedonicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_31__bin.3 53.44827586 0 26 672755 51.05 51323 SAMN40695511 SRR28523248 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_62__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_32__bin.24 85.12775637 1.839708561 267 1667209 34.76 7673 SAMN40695468 SRR28523112 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.17 DeFilippisF_xxxx__DF_100__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Marinilactibacillus Marinilactibacillus psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_32__bin.1 55.17241379 0 180 2418419 55.93 18986 SAMN40695468 SRR28523112 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_114__bin.22 MASTER_WP4_UNINA_1__FO005_71775__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_32__bin.21 50 0 248 1549938 40.13 7614 SAMN40695468 SRR28523112 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811282__bin.3 FalardeauJ_2023__SRR20811282__bin.3 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_32__bin.17 58.93416928 0 514 3096774 39.6 7561 SAMN40695468 SRR28523112 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_632 DeFilippisF_xxxx__DF_32__bin.17 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_33__bin.1 79.67196922 0.291120815 101 1312301 39.62 19729 SAMN40695512 SRR28523247 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_33__bin.10 72.11269978 1.942934783 423 1463506 47.05 3878 SAMN40695512 SRR28523247 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 DeFilippisF_xxxx__DF_33__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_33__bin.11 99.21465969 1.047120419 115 2707367 53.58 35868 SAMN40695512 SRR28523247 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic DeFilippisF_xxxx__DF_33__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_33__bin.8 96.42857143 0.081168831 110 1506836 50.91 21616 SAMN40695512 SRR28523247 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_33__bin.6 95.53964758 4.790748899 329 2865852 55.63 13818 SAMN40695512 SRR28523247 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_33__bin.2 60.34482759 0 94 837479 35.75 14015 SAMN40695512 SRR28523247 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 MASTER_WP4_UNINA_1__PA207_73417__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_33__bin.4 91.69506335 0.955657492 271 3296066 56.61 20095 SAMN40695512 SRR28523247 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_114__bin.22 MASTER_WP4_UNINA_1__FO005_71775__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_33__bin.13 94.53225547 1.931306306 447 3454673 39.95 11572 SAMN40695512 SRR28523247 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811282__bin.3 FalardeauJ_2023__SRR20811282__bin.3 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_34__bin.7 95.93886463 4.95191308 211 1751734 39.15 14008 SAMN40695515 SRR28523244 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_34__bin.10 81.03448276 1.724137931 374 2424620 46.79 8417 SAMN40695515 SRR28523244 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 DeFilippisF_xxxx__DF_34__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_34__bin.25 90.84415584 0 85 1438629 50.81 23840 SAMN40695515 SRR28523244 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_34__bin.15 96.15761136 2.577092511 248 2723485 55.81 17031 SAMN40695515 SRR28523244 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_34__bin.26 87.52565336 1.308539945 473 2024062 66.07 5450 SAMN40695515 SRR28523244 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 DeFilippisF_xxxx__DF_34__bin.26 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_34__bin.22 94.87876736 2.909156217 447 3614116 55.09 11368 SAMN40695515 SRR28523244 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_34__bin.16 64.4534632 0 143 1004247 36.08 9222 SAMN40695515 SRR28523244 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_34__bin.9 92.93478261 0.27526821 102 2386161 48.14 38832 SAMN40695515 SRR28523244 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 CM_UNINA_FFOOD__FFOOD_415__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_34__bin.18 89.29445173 2.4890782 303 2971396 56.52 15163 SAMN40695515 SRR28523244 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_114__bin.22 MASTER_WP4_UNINA_1__FO005_71775__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_34__bin.23 97.09620335 2.551077864 341 3543323 39.99 17941 SAMN40695515 SRR28523244 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811282__bin.3 FalardeauJ_2023__SRR20811282__bin.3 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_35__bin.7 97.70440252 1.06918239 347 2168283 35.24 8776 SAMN40695518 SRR28523240 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_35__bin.4 94.65065502 0.145560408 50 1598529 39.21 56542 SAMN40695518 SRR28523240 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_35__bin.2 91.54580926 1.139635774 362 2349532 46.87 8689 SAMN40695518 SRR28523240 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 DeFilippisF_xxxx__DF_35__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_35__bin.8 98.16753927 1.221640489 179 2829289 53.5 24930 SAMN40695518 SRR28523240 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic DeFilippisF_xxxx__DF_33__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_35__bin.5 92.42424242 0 182 1541169 36.54 12034 SAMN40695518 SRR28523240 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_35__bin.1 86.09180862 0.839517625 252 1224917 51.51 6404 SAMN40695518 SRR28523240 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_35__bin.6 97.10144928 0.362318841 96 2605790 48.01 47088 SAMN40695518 SRR28523240 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 CM_UNINA_FFOOD__FFOOD_415__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_36__bin.4 94.88351254 1.388888889 266 2514884 32.86 13590 SAMN40695519 SRR28523239 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_36__bin.7 92.64150943 0.566037736 46 1900969 39.21 64767 SAMN40695519 SRR28523239 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 WalshL_xxxx__V9__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_37__bin.21 97.3255814 2.325581395 430 3862641 63.18 13645 SAMN40695521 SRR28523237 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_37__bin.24 97.44140625 2.256944444 33 2244512 42.58 93186 SAMN40695521 SRR28523237 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_37__bin.10 96.82017544 1.973684211 313 2507889 67.59 13166 SAMN40695521 SRR28523237 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_37__bin.2 90.48913043 3.21557971 329 2237037 43.2 8691 SAMN40695521 SRR28523237 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 DeFilippisF_xxxx__DF_37__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_37__bin.23 73.44827586 3.448275862 521 2686634 55.24 6379 SAMN40695521 SRR28523237 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 DeFilippisF_xxxx__DF_37__bin.23 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_37__bin.7 96.26122334 3.005050505 347 2595930 68.66 11777 SAMN40695521 SRR28523237 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 160 160 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_37__bin.20 64.74217891 1.775956284 315 1473577 36.59 5449 SAMN40695521 SRR28523237 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 DeFilippisF_xxxx__DF_37__bin.20 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Ruoffia Ruoffia tabacinasalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_37__bin.19 87.38313674 0.389908257 320 3057386 56.18 13503 SAMN40695521 SRR28523237 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_114__bin.22 MASTER_WP4_UNINA_1__FO005_71775__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_37__bin.9 97.75280899 1.235955056 136 1854246 27.44 22843 SAMN40695521 SRR28523237 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__FO007_71775__bin.32 MASTER_WP4_UNINA_1__FO007_71775__bin.32 Fusobacteriota;Fusobacteriia;Fusobacteriales;Fusobacteriaceae;Fusobacterium_B Fusobacterium B sp041668805 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_37__bin.11 89.54954955 3.873873874 461 3245095 48.48 8736 SAMN40695521 SRR28523237 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811275__bin.8 FalardeauJ_2023__SRR20811275__bin.8 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Morganella Morganella psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_38__bin.5 77.46843434 1.704545455 313 1456182 35.26 5387 SAMN40695497 SRR28523263 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 FontanaF_2023__SRR20746856__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_38__bin.8 92.94046938 0.632411067 234 2563358 46.68 15037 SAMN40695497 SRR28523263 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 MASTER_WP4_UNINA_1__PT008_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_39__bin.1 51.01880878 0 428 1777225 45.73 4663 SAMN40695522 SRR28523236 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 DeFilippisF_xxxx__DF_39__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_39__bin.4 87.30037125 1.979166667 457 2227786 46.48 5812 SAMN40695522 SRR28523236 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 DeFilippisF_xxxx__DF_39__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_39__bin.11 93.53070175 0.328947368 254 2123303 67.59 13595 SAMN40695522 SRR28523236 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_39__bin.3 94.53551913 0.546448087 118 1613530 53.52 23119 SAMN40695522 SRR28523236 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 FontanaF_2023__SRR20746839__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_39__bin.10 92.49124079 1.669787765 154 1651779 37.61 16423 SAMN40695522 SRR28523236 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 MASTER_WP4_UNINA_1__PM012_71775__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_39__bin.8 83.83116883 1.785714286 169 1161232 51.47 10539 SAMN40695522 SRR28523236 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_39__bin.9 97.8125 0 120 2174326 44.56 27072 SAMN40695522 SRR28523236 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_39__bin.12 97.01086957 1.358695652 53 1907214 40.45 45393 SAMN40695522 SRR28523236 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_5__bin.15 DeFilippisF_xxxx__DF_39__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus rennini cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_4__bin.13 55.78869048 1.25 141 1119370 46.39 8733 SAMN40695506 SRR28523253 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 DeFilippisF_xxxx__DF_4__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_4__bin.28 93.9724082 0.566037736 160 2035988 34.92 20409 SAMN40695506 SRR28523253 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_4__bin.21 60.91954023 0 266 1673315 35.51 7751 SAMN40695506 SRR28523253 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_4__bin.19 90.03285544 0.87962963 385 2279703 32.75 7766 SAMN40695506 SRR28523253 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_4__bin.15 95.8125 0.3125 74 2319047 43.85 46801 SAMN40695506 SRR28523253 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_4__bin.16 68.56725146 0.779727096 517 2449006 70.47 6004 SAMN40695506 SRR28523253 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__771_Tarentaise__bin.3 DeFilippisF_xxxx__DF_4__bin.16 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium tyrofermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_4__bin.6 87.74835688 1.821493625 263 1970242 34.88 9863 SAMN40695506 SRR28523253 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.17 DeFilippisF_xxxx__DF_100__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Marinilactibacillus Marinilactibacillus psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_4__bin.12 95 0.208333333 98 2027722 49.75 25911 SAMN40695506 SRR28523253 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_003946095.1_ASM394609v1_genomic MASTER_WP4_UNINA_1__CM008_71775__bin.21 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus lindianensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_4__bin.3 94.26605505 0.840978593 177 3340912 64.24 38641 SAMN40695506 SRR28523253 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259376__bin.8 DeFilippisF_xxxx__DF_4__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Arthrobacter_H Arthrobacter H rhombi A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_4__bin.24 61.72936259 0 294 2763968 62.45 13201 SAMN40695506 SRR28523253 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q03-30__bin.5 AlvarezOrdonezA_xxxx__Q07-30__bin.30 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_4__bin.29 51.72413793 0 415 1405341 32.73 3740 SAMN40695506 SRR28523253 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811284__bin.4 DeFilippisF_xxxx__DF_4__bin.29 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Mammaliicoccus Mammaliicoccus vitulinus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_4__bin.22 63.85057471 1.724137931 761 5198963 68.75 9499 SAMN40695506 SRR28523253 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_4__bin.22 DeFilippisF_xxxx__DF_4__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_40__bin.2 96.30188679 0.660377358 50 2417830 34.83 120159 SAMN40695504 SRR28523256 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_40__bin.3 57.89473684 0 34 915210 39.1 42249 SAMN40695504 SRR28523256 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_40__bin.4 66.84782609 0 35 1502111 46.7 80107 SAMN40695504 SRR28523256 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_41__bin.8 88.11990622 1.583489291 192 1493512 39.3 10762 SAMN40695523 SRR28523235 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_41__bin.2 69.85370951 0 360 1431416 46.93 4397 SAMN40695523 SRR28523235 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 DeFilippisF_xxxx__DF_41__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_41__bin.10 84.2215256 0 175 2056793 35.47 18188 SAMN40695523 SRR28523235 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_41__bin.13 67.98850575 4.310344828 453 2214160 46.98 5780 SAMN40695523 SRR28523235 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 DeFilippisF_xxxx__DF_41__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_41__bin.22 96.03909465 2.901234568 327 2517314 45.1 10094 SAMN40695523 SRR28523235 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 DeFilippisF_xxxx__DF_41__bin.22 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_41__bin.11 75.41196915 3.333333333 625 2006839 32.58 3546 SAMN40695523 SRR28523235 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 DeFilippisF_xxxx__DF_41__bin.11 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_41__bin.7 73.44269103 2.38372093 783 2561366 62.98 3631 SAMN40695523 SRR28523235 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 DeFilippisF_xxxx__DF_41__bin.7 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_41__bin.17 91.38878821 1.310861423 117 1725557 37.52 25370 SAMN40695523 SRR28523235 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_104__bin.4 DeFilippisF_xxxx__DF_104__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus macedonicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_41__bin.4 72.75862069 0 301 1929811 44.82 9004 SAMN40695523 SRR28523235 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_41__bin.5 68.67341189 2.205882353 485 1530696 36.83 3460 SAMN40695523 SRR28523235 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_385__bin.9 DeFilippisF_xxxx__DF_41__bin.5 Bacteroidota;Bacteroidia;Flavobacteriales;Weeksellaceae;Kaistella Kaistella haifensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_41__bin.12 93.67364747 1.614310646 276 2156289 37.89 11550 SAMN40695523 SRR28523235 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_41__bin.12 DeFilippisF_xxxx__DF_41__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus Ligilactobacillus excrementavium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_42__bin.9 50.85621829 0.855167394 161 713024 39.78 4888 SAMN40695524 SRR28523234 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 MAG_392 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_42__bin.3 96.54438406 0.559947299 258 2333348 46.78 13099 SAMN40695524 SRR28523234 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_42__bin.4 93.42532468 0.324675325 189 1731153 36.18 12841 SAMN40695524 SRR28523234 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_42__bin.15 90.93381389 0.688073394 340 3198539 56.48 14301 SAMN40695524 SRR28523234 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_114__bin.22 MASTER_WP4_UNINA_1__FO005_71775__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_42__bin.10 87.39994585 1.552529974 656 3154925 39.99 5949 SAMN40695524 SRR28523234 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811282__bin.3 DeFilippisF_xxxx__DF_42__bin.10 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_42__bin.16 94.57568807 1.536697248 598 4089467 63.76 9134 SAMN40695524 SRR28523234 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.1 DeFilippisF_xxxx__DF_100__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Specibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_42__bin.14 97.76397516 0.217391304 44 5174492 59.23 187573 SAMN40695524 SRR28523234 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_42__bin.14 DeFilippisF_xxxx__DF_42__bin.14 Pseudomonadota;Alphaproteobacteria;Rhizobiales;Rhizobiaceae;Phyllobacterium Phyllobacterium calauticae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_43__bin.4 99.02597403 0 151 1740311 36.43 18649 SAMN40695525 SRR28523233 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_44__bin.4 76.12923514 4.874213836 292 1571996 39.05 6730 SAMN40695509 SRR28523250 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.11 DeFilippisF_xxxx__DF_44__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A carnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_44__bin.6 55.17241379 0 74 795815 36.09 14839 SAMN40695509 SRR28523250 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_45__bin.9 81.91237148 1.21875 309 1984404 46 7416 SAMN40695486 SRR28523111 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 DeFilippisF_xxxx__DF_45__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_45__bin.8 71.88679245 0.094339623 84 1348382 35.32 30912 SAMN40695486 SRR28523111 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_45__bin.3 50.87719298 0 17 637116 37.87 80348 SAMN40695486 SRR28523111 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_45__bin.2 55.05822416 0 25 889274 39.57 63417 SAMN40695486 SRR28523111 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_45__bin.6 96.40235972 1.992753623 256 2735920 46.48 15699 SAMN40695486 SRR28523111 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 DeFilippisF_xxxx__DF_45__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_45__bin.7 62.64367816 3.448275862 367 2001329 34.57 7202 SAMN40695486 SRR28523111 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 DeFilippisF_xxxx__DF_45__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_45__bin.5 99.38271605 2.951388889 122 2875909 44.84 36360 SAMN40695486 SRR28523111 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_45__bin.12 90.82775411 2.528301887 158 2068112 35.56 26482 SAMN40695486 SRR28523111 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_178 MAG_178 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_47__bin.6 99.45652174 0 86 1794044 42.18 36116 SAMN40695526 SRR28523231 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_47__bin.11 93.62104346 0.557640412 249 1723166 36.47 9704 SAMN40695526 SRR28523231 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_47__bin.3 78.62068966 0.862068966 45 2720660 33.02 280047 SAMN40695526 SRR28523231 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0167-001_Staphylococcus_succinus_BC15 MASTER_WP4_UNINA_1__SR008_71775__bin.14 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus succinus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_5__bin.4 72.12643678 1.724137931 350 1581276 34.87 5582 SAMN40695527 SRR28523166 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 DeFilippisF_xxxx__DF_5__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_5__bin.8 73.20754717 0.628930818 39 1488059 40.27 64736 SAMN40695527 SRR28523166 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 FontanaF_2023__SRR20746866__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_5__bin.10 56.66998024 0.27173913 320 1219327 46.8 4144 SAMN40695527 SRR28523166 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 DeFilippisF_xxxx__DF_5__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_5__bin.14 92.62604438 0.880503145 158 2393059 35.42 27236 SAMN40695527 SRR28523166 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_5__bin.1 88.49022634 3.086419753 328 2621298 44.95 10655 SAMN40695527 SRR28523166 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_5__bin.13 91.57608696 2.989130435 242 2528887 42.87 14503 SAMN40695527 SRR28523166 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 DeFilippisF_xxxx__DF_28__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_5__bin.16 89.94910941 1.558524173 221 1761486 36.5 12428 SAMN40695527 SRR28523166 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS14-28__bin.1 DeFilippisF_xxxx__DF_5__bin.16 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus uberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_5__bin.9 98.06159893 2.857766143 123 2314683 38.3 29503 SAMN40695527 SRR28523166 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_5__bin.12 98.75 0.208333333 44 2192494 49.52 77518 SAMN40695527 SRR28523166 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_003946095.1_ASM394609v1_genomic DeFilippisF_xxxx__DF_5__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus lindianensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_5__bin.15 99.18478261 1.086956522 29 2174610 40.59 99000 SAMN40695527 SRR28523166 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_5__bin.15 DeFilippisF_xxxx__DF_5__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus rennini cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_5__bin.3 96.85905612 1.205002834 173 5177500 57.74 53277 SAMN40695527 SRR28523166 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2587__bin.9 DeFilippisF_xxxx__DF_5__bin.3 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella terrigena cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_5__bin.11 94.15357766 4.144851658 365 2273713 36.57 8387 SAMN40695527 SRR28523166 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. EBC_098.21 DeFilippisF_xxxx__DF_5__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus farciminis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_5__bin.6 85.8010431 0.785340314 306 2153655 39.52 8658 SAMN40695527 SRR28523166 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_5__bin.6 DeFilippisF_xxxx__DF_5__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_52__bin.5 93.03118908 2.680311891 775 3805926 70.36 6339 SAMN40695469 SRR28523265 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__771_Tarentaise__bin.3 DeFilippisF_xxxx__DF_52__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium tyrofermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_52__bin.9 96.24304267 0 93 1468145 50.87 24476 SAMN40695469 SRR28523265 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_52__bin.6 92.37008218 4.326047359 424 2599448 34.85 9117 SAMN40695469 SRR28523265 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.17 DeFilippisF_xxxx__DF_100__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Marinilactibacillus Marinilactibacillus psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_52__bin.1 88.76310616 1.22542595 228 2985166 56.55 22371 SAMN40695469 SRR28523265 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_114__bin.22 MASTER_WP4_UNINA_1__FO005_71775__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_54__bin.6 79.54545455 0 123 1338161 36.37 17409 SAMN40695477 SRR28523317 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_54__bin.11 93.86792453 2.908848506 220 2043822 39.02 13978 SAMN40695477 SRR28523317 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.11 DeFilippisF_xxxx__DF_54__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A carnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_54__bin.10 91.97255264 0.74906367 100 1652398 37.72 33912 SAMN40695477 SRR28523317 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 MASTER_WP4_UNINA_1__PM012_71775__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_54__bin.3 76.31477232 1.357733176 227 1061683 51.66 5572 SAMN40695477 SRR28523317 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_54__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_54__bin.1 97.8125 0.104166667 171 2250988 44.57 21117 SAMN40695477 SRR28523317 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_54__bin.9 97.9 0.1 456 12043102 36.24 69350 SAMN40695477 SRR28523317 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_58__bin.11 81.23781676 1.754385965 986 3049676 70.14 3364 SAMN40695500 SRR28523260 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__771_Tarentaise__bin.3 DeFilippisF_xxxx__DF_58__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium tyrofermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_58__bin.5 98.72881356 0 162 1868884 68.83 17507 SAMN40695500 SRR28523260 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_58__bin.5 DeFilippisF_xxxx__DF_58__bin.5 Deinococcota;Deinococci;Deinococcales;Thermaceae;Thermus Thermus parvatiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_58__bin.13 74.73951507 0.715377894 691 2542391 64.41 4288 SAMN40695500 SRR28523260 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259376__bin.8 DeFilippisF_xxxx__DF_58__bin.13 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Arthrobacter_H Arthrobacter H rhombi A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_58__bin.6 82.77777778 0 32 2184914 32.83 184646 SAMN40695500 SRR28523260 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259377__bin.4 AlvarezOrdonezA_xxxx__Q06-30__bin.11 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_58__bin.19 91.33517495 2.209944751 470 2992449 32.26 9224 SAMN40695500 SRR28523260 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811284__bin.4 FalardeauJ_2023__SRR20811284__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Mammaliicoccus Mammaliicoccus vitulinus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_58__bin.12 91.09195402 1.915708812 280 1800645 38.87 9175 SAMN40695500 SRR28523260 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO013_71775__bin.11 MASTER_WP4_UNINA_1__GO013_71775__bin.11 Bacillota;Bacilli;Staphylococcales;Salinicoccaceae;Jeotgalicoccus NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_59__bin.15 71.77429976 0.804221252 265 1054553 39.65 4685 SAMN40695501 SRR28523259 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 DeFilippisF_xxxx__DF_59__bin.15 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_59__bin.12 95.94405594 2.797202797 155 1670716 28.09 17917 SAMN40695501 SRR28523259 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_59__bin.12 DeFilippisF_xxxx__DF_59__bin.12 Bacillota;Clostridia;Tissierellales;Peptoniphilaceae;Anaerosphaera Anaerosphaera sp946403255 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_59__bin.13 50.82872928 1.657458564 12 1281629 35.39 283762 SAMN40695501 SRR28523259 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_59__bin.13 DeFilippisF_xxxx__DF_59__bin.13 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;NA NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_59__bin.18 50.45045045 2.482625483 503 1613259 49.13 3490 SAMN40695501 SRR28523259 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_59__bin.18 DeFilippisF_xxxx__DF_59__bin.18 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Morganella Morganella psychrotolerans B cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_59__bin.4 95.7 0.1 373 26704341 48.99 124922 SAMN40695501 SRR28523259 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_59__bin.6 77.2 1.3 1907 9878426 38.16 6765 SAMN40695501 SRR28523259 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 DeFilippisF_xxxx__DF_59__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_6__bin.4 95.6561729 2.777777778 326 2438143 34.93 11260 SAMN40695529 SRR28523164 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 DeFilippisF_xxxx__DF_6__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_6__bin.1 93.3836478 2.666666667 166 1814233 40.57 15214 SAMN40695529 SRR28523164 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 FontanaF_2023__SRR20746866__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_6__bin.5 90.72731666 2.97752809 290 1812236 37.89 9031 SAMN40695529 SRR28523164 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 MASTER_WP4_UNINA_1__PM012_71775__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_6__bin.2 87.74891775 0 205 1313326 51.29 8486 SAMN40695529 SRR28523164 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_73__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_6__bin.8 50 0.862068966 140 878989 35.93 9039 SAMN40695529 SRR28523164 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 MASTER_WP4_UNINA_1__PA207_73417__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_60__bin.2 94.65429403 0.208167034 99 1622524 39.2 24383 SAMN40695513 SRR28523246 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_60__bin.7 57.92349727 0 52 835235 51.98 30224 SAMN40695513 SRR28523246 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 MASTER_WP4_UNINA_1__PA207_73417__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_60__bin.6 51.73160173 0.324675325 102 818645 37.35 10826 SAMN40695513 SRR28523246 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_60__bin.4 80.84415584 0 84 1347779 50.94 22170 SAMN40695513 SRR28523246 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_60__bin.1 97.10144928 0.362318841 93 2539409 48.12 47917 SAMN40695513 SRR28523246 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 CM_UNINA_FFOOD__FFOOD_415__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_61__bin.7 88.93044154 2.166285278 246 2437598 46.6 13491 SAMN40695516 SRR28523242 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 DeFilippisF_xxxx__DF_61__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_61__bin.3 95.9375 0.208333333 94 2165026 42.42 36933 SAMN40695516 SRR28523242 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_61__bin.3 DeFilippisF_xxxx__DF_61__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus dabitei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_61__bin.9 72.4137931 0 132 1160787 36.13 10781 SAMN40695516 SRR28523242 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_61__bin.1 74.67532468 0 68 1149553 50.62 23580 SAMN40695516 SRR28523242 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_73__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_62__bin.4 99.45652174 0 41 2858333 46.41 139151 SAMN40695498 SRR28523262 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_62__bin.5 98.37662338 0 88 1707503 50.43 30768 SAMN40695498 SRR28523262 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_62__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_67__bin.23 91.6550037 0.705467372 199 1506859 37.92 9887 SAMN40695474 SRR28523146 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_67__bin.32 55.54357592 0.314465409 139 946224 40.92 8676 SAMN40695474 SRR28523146 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 FontanaF_2023__SRR20746866__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_67__bin.3 84.2943741 0.209763539 309 1994938 46.95 7464 SAMN40695474 SRR28523146 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 DeFilippisF_xxxx__DF_67__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_67__bin.14 96.91358025 3.086419753 127 2608233 45.19 30656 SAMN40695474 SRR28523146 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_67__bin.26 95.9375 0 18 1850754 42.6 128656 SAMN40695474 SRR28523146 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_67__bin.22 51.72413793 1.724137931 139 906557 35.83 8635 SAMN40695474 SRR28523146 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_178 MAG_178 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_67__bin.13 72.4137931 0 301 1672103 32.26 6908 SAMN40695474 SRR28523146 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0136-001_Staphylococcus_aureus_18SBCL679 DeFilippisF_xxxx__DF_67__bin.13 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus aureus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_67__bin.7 91.43033597 4.705615942 263 1942268 41 9146 SAMN40695474 SRR28523146 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 DeFilippisF_xxxx__DF_67__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_67__bin.30 67.41573034 0 16 921694 43.73 75834 SAMN40695474 SRR28523146 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0094-002_Leuconostoc_lactis_WIKIM21 MASTER_WP4_CSIC_2__P2559__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_67__bin.10 98.14898715 1.342072409 145 2325669 37.35 33233 SAMN40695474 SRR28523146 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_104__bin.4 DeFilippisF_xxxx__DF_67__bin.10 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus macedonicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_7__bin.2 83.01630435 2.445652174 150 1759486 41.92 17741 SAMN40695510 SRR28523249 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_7__bin.7 52.6645768 1.724137931 530 1285580 34.52 2392 SAMN40695510 SRR28523249 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_7__bin.7 DeFilippisF_xxxx__DF_7__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_7__bin.14 72.74224806 0.290697674 787 2334039 63.23 3194 SAMN40695510 SRR28523249 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 DeFilippisF_xxxx__DF_7__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_7__bin.24 75.68306011 0 90 1398093 53.05 23445 SAMN40695510 SRR28523249 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 DeFilippisF_xxxx__DF_7__bin.24 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_7__bin.27 85.14492754 1.539855072 326 1799452 43.31 6980 SAMN40695510 SRR28523249 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 DeFilippisF_xxxx__DF_7__bin.27 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_7__bin.11 96.37345679 2.12962963 197 2321982 36.63 23369 SAMN40695510 SRR28523249 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KharnaiorP_2023__SRR22859379__bin.8 DeFilippisF_xxxx__DF_7__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_7__bin.19 91.36445473 1.826131687 283 1500679 42.57 6194 SAMN40695510 SRR28523249 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 DeFilippisF_xxxx__DF_7__bin.19 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_7__bin.17 99.0625 0 128 2131111 44.54 25764 SAMN40695510 SRR28523249 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_7__bin.8 97.2826087 0.27173913 73 1792447 39.87 33609 SAMN40695510 SRR28523249 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_7__bin.8 DeFilippisF_xxxx__DF_7__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus wasatchensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_7__bin.20 55.77352472 1.754385965 310 2145813 48.46 9252 SAMN40695510 SRR28523249 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_003946265.1_ASM394626v1_genomic DeFilippisF_xxxx__DF_7__bin.20 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus yonginensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_7__bin.22 98.1 0.1 560 12080306 36.24 48270 SAMN40695510 SRR28523249 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_73__bin.6 95.84726867 2.166285278 398 2669212 46.58 8911 SAMN40695531 SRR28523162 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_357__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_73__bin.4 91.23376623 0.324675325 182 1386064 51.03 9656 SAMN40695531 SRR28523162 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_73__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_73__bin.8 56.89655172 0 121 856388 36.07 9012 SAMN40695531 SRR28523162 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 MASTER_WP4_UNINA_1__PA207_73417__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_74__bin.4 95.3 0.1 445 26702038 49 104276 SAMN40695502 SRR28523258 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_75__bin.6 88.8650842 4.088050314 98 2010186 40.48 42073 SAMN40695530 SRR28523163 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 WalshL_xxxx__F1__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_75__bin.12 58.34979602 0.579710145 360 1105514 47.1 3216 SAMN40695530 SRR28523163 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 DeFilippisF_xxxx__DF_75__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_75__bin.15 92.9919807 0.564663024 217 1480937 53.55 8540 SAMN40695530 SRR28523163 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 FontanaF_2023__SRR20746839__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_75__bin.11 74.71910112 0.374531835 77 1605776 39.36 51118 SAMN40695530 SRR28523163 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_270__bin.3 DeFilippisF_xxxx__DF_75__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus suis AA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_75__bin.9 98.4375 0 163 2172901 44.6 25238 SAMN40695530 SRR28523163 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_75__bin.20 89.3258427 0.561797753 48 1501426 43.66 71326 SAMN40695530 SRR28523163 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_75__bin.10 90.80508475 1.906779661 320 1710294 68.95 7161 SAMN40695530 SRR28523163 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_58__bin.5 DeFilippisF_xxxx__DF_75__bin.10 Deinococcota;Deinococci;Deinococcales;Thermaceae;Thermus Thermus parvatiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_75__bin.14 52.38095238 0.037202381 19 2315622 57.33 157923 SAMN40695530 SRR28523163 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_19 MAG_19 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella pneumoniae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_75__bin.13 88.10594995 1.196319018 160 1141589 43.14 9358 SAMN40695530 SRR28523163 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_000420365.1_ASM42036v1_genomic DeFilippisF_xxxx__DF_75__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella halotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_75__bin.16 55.35714286 0 58 1853968 36.17 63622 SAMN40695530 SRR28523163 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF15__bin.4 DeFilippisF_xxxx__DF_75__bin.16 Bacillota;Bacilli;Bacillales;Bacillaceae_G;Bacillus_A Bacillus A pacificus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_76__bin.6 94.48404034 1.004886671 142 1539417 39.14 16701 SAMN40695517 SRR28523241 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_76__bin.2 59.52380952 0 102 922586 36.94 15758 SAMN40695517 SRR28523241 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_76__bin.7 60.71428571 0 48 736038 51.41 21021 SAMN40695517 SRR28523241 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_73__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_76__bin.1 80.33860431 1.313405797 234 2482171 47.8 14672 SAMN40695517 SRR28523241 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_421__bin.4 CM_UNINA_FFOOD__FFOOD_421__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus zeae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_77__bin.9 92.76859504 1.941287879 304 2015519 35.25 9093 SAMN40695514 SRR28523245 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_77__bin.13 93.19331808 0.363901019 108 1534668 39.3 23232 SAMN40695514 SRR28523245 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_77__bin.5 94.0754717 1.761006289 150 1808565 40.8 17695 SAMN40695514 SRR28523245 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 FontanaF_2023__SRR20746866__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_77__bin.15 94.14690382 0 151 2680781 46.69 26854 SAMN40695514 SRR28523245 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 DeFilippisF_xxxx__DF_96__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_77__bin.3 93.45549738 0.523560209 170 2677574 53.59 22811 SAMN40695514 SRR28523245 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic DeFilippisF_xxxx__DF_33__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_77__bin.7 94.65831787 0.757575758 189 1531130 36.46 10853 SAMN40695514 SRR28523245 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_77__bin.16 96.54290931 2.39500913 208 2283327 35.54 23182 SAMN40695514 SRR28523245 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_178 MAG_178 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_77__bin.11 97.5308642 1.851851852 129 1632190 42.8 19089 SAMN40695514 SRR28523245 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 DeFilippisF_xxxx__DF_77__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_77__bin.12 93.18181818 0 96 1527143 50.87 22170 SAMN40695514 SRR28523245 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_77__bin.2 50.28124601 1.029111338 462 1247169 33.41 2826 SAMN40695514 SRR28523245 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0136-001_Staphylococcus_aureus_18SBCL679 DeFilippisF_xxxx__DF_77__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus aureus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_77__bin.14 89.10573123 1.992753623 170 2154419 48.35 17749 SAMN40695514 SRR28523245 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 CM_UNINA_FFOOD__FFOOD_415__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_79__bin.7 98.625 1.09375 115 2986706 39.94 38647 SAMN40695528 SRR28523165 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 DeFilippisF_xxxx__DF_79__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_79__bin.16 85.84064884 3.661616162 356 1733450 35 6089 SAMN40695528 SRR28523165 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 DeFilippisF_xxxx__DF_79__bin.16 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_79__bin.17 88.44045908 0.821176583 274 2226910 46.93 9803 SAMN40695528 SRR28523165 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FalardeauJ_2023__SRR20811272__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_79__bin.13 67.98449612 1.860465116 378 2141644 63.53 7066 SAMN40695528 SRR28523165 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 DeFilippisF_xxxx__DF_79__bin.13 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_79__bin.15 86.25757576 1.742424242 162 1530996 64.58 12285 SAMN40695528 SRR28523165 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_296__bin.3 CM_UNINA_FFOOD__FFOOD_296__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_79__bin.12 99.375 0.3125 74 2203935 41.87 45793 SAMN40695528 SRR28523165 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_79__bin.6 82.77354026 1.298701299 167 1598020 36.13 13681 SAMN40695528 SRR28523165 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_79__bin.23 96.94656489 0.190839695 30 1901566 38.17 159138 SAMN40695528 SRR28523165 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_418__bin.8 CM_UNINA_FFOOD__FFOOD_418__bin.8 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus petauri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_79__bin.1 76.67424242 3.656565657 273 1605061 58.25 6863 SAMN40695528 SRR28523165 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_290__bin.1 DeFilippisF_xxxx__DF_79__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia crudilactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_79__bin.10 94.24951267 3.138401559 616 3409499 70.6 7636 SAMN40695528 SRR28523165 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_79__bin.8 85.40229885 0 802 4732082 70.1 8219 SAMN40695528 SRR28523165 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__771_Tarentaise__bin.3 DeFilippisF_xxxx__DF_79__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium tyrofermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_79__bin.11 97.69107439 3.103250916 144 4633020 55.13 54288 SAMN40695528 SRR28523165 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_79__bin.11 DeFilippisF_xxxx__DF_79__bin.11 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter Enterobacter kobei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_79__bin.22 86.67758847 4.778287462 427 2927040 66.7 9665 SAMN40695528 SRR28523165 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2558__bin.5 MASTER_WP4_CSIC_2__P2558__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Arthrobacter_H Arthrobacter H sp030452125 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_79__bin.25 96.67810177 1.194968553 182 2133960 35.38 18099 SAMN40695528 SRR28523165 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_178 MAG_178 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_8__bin.4 97.2826087 0 80 1775352 41.93 41064 SAMN40695532 SRR28523161 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DF_8__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_8__bin.16 65.51724138 0 174 750075 39.66 5178 SAMN40695532 SRR28523161 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 MASTER_WP4_UNINA_1__GO202_71775__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_8__bin.10 71.17300131 0.352228047 159 2671700 56.71 27896 SAMN40695532 SRR28523161 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_114__bin.22 MASTER_WP4_UNINA_1__FO005_71775__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_8__bin.5 89.47580645 0.462962963 523 2645849 33.03 6438 SAMN40695532 SRR28523161 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259377__bin.4 AlvarezOrdonezA_xxxx__Q06-30__bin.11 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_8__bin.11 91.1 0.1 1442 26142931 48.99 28348 SAMN40695532 SRR28523161 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_8__bin.6 96.4 0.1 705 11592960 36.28 26428 SAMN40695532 SRR28523161 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_85__bin.4 57.56649159 0 187 827600 39.63 5056 SAMN40695470 SRR28523254 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 MAG_86 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_85__bin.12 51.26937984 0.775193798 681 1702052 63.34 2535 SAMN40695470 SRR28523254 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 DeFilippisF_xxxx__DF_85__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_85__bin.13 84.25925926 1.949317739 869 3508500 70.24 4728 SAMN40695470 SRR28523254 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__771_Tarentaise__bin.3 DeFilippisF_xxxx__DF_85__bin.13 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium tyrofermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_85__bin.2 93.58379716 0 150 1588929 50.61 14506 SAMN40695470 SRR28523254 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MAG_503 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_85__bin.6 97.76234568 1.748971193 260 2076355 38.24 11991 SAMN40695470 SRR28523254 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967740__bin.10 LeechJ_2020__ERS3967740__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus parvulus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_85__bin.9 95.6541078 2.663074105 335 3022766 41.96 12624 SAMN40695470 SRR28523254 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 181 MAG_643 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_85__bin.10 92.7348187 1.509938838 355 3230786 56.63 14864 SAMN40695470 SRR28523254 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_114__bin.22 MASTER_WP4_UNINA_1__FO005_71775__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_85__bin.3 98.40517241 1.50862069 187 3669980 53.98 42005 SAMN40695470 SRR28523254 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.full.31 DeFilippisF_xxxx__DF_85__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_86__bin.8 86.93523394 0.505050505 231 1864821 34.89 12726 SAMN40695487 SRR28523100 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_86__bin.6 91.25 0.512820513 179 2165282 46.92 20737 SAMN40695487 SRR28523100 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_86__bin.1 87.81431786 1.06918239 155 2173241 35.46 24608 SAMN40695487 SRR28523100 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_86__bin.5 94.61458333 1.463068182 414 1924882 43.91 5478 SAMN40695487 SRR28523100 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 DeFilippisF_xxxx__DF_86__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_88__bin.5 85.33218964 0.451237263 239 1497152 38.97 8045 SAMN40695478 SRR28523306 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 DeFilippisF_xxxx__DF_88__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_88__bin.1 86.42817931 0.961654589 351 2203211 46.86 7943 SAMN40695478 SRR28523306 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_88__bin.11 88.91692848 3.030936455 554 2673023 46.6 5650 SAMN40695478 SRR28523306 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 DeFilippisF_xxxx__DF_88__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_88__bin.3 92.93193717 2.006980803 212 2486754 53.89 18571 SAMN40695478 SRR28523306 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic DeFilippisF_xxxx__DF_33__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_88__bin.6 90.86693581 0.24968789 195 1509632 37.64 11208 SAMN40695478 SRR28523306 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_104__bin.4 DeFilippisF_xxxx__DF_104__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus macedonicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_88__bin.8 75.01574183 2.007083825 225 984212 51.5 4998 SAMN40695478 SRR28523306 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_88__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_88__bin.10 50.0421559 1.00456621 392 1271335 42.17 3429 SAMN40695478 SRR28523306 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-26__bin.7 DeFilippisF_xxxx__DF_88__bin.10 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter johnsonii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_9__bin.8 70.5666399 1.641414141 294 1844110 34.81 8633 SAMN40695493 SRR28523268 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 DeFilippisF_xxxx__DF_9__bin.8 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_9__bin.12 60.5015674 3.448275862 664 1968245 43.9 3077 SAMN40695493 SRR28523268 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_9__bin.12 DeFilippisF_xxxx__DF_9__bin.12 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Moraxella_A Moraxella A sp902506215 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_92__bin.1 52.06149927 4.630553823 156 843560 39.98 6051 SAMN40695479 SRR28523295 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 MAG_169 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_92__bin.7 91.66666667 0 124 2197991 46.84 30455 SAMN40695479 SRR28523295 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_92__bin.9 50.81504702 0.574712644 103 1090019 35.63 19417 SAMN40695479 SRR28523295 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_92__bin.11 96.44808743 0.273224044 112 1647794 53.33 20777 SAMN40695479 SRR28523295 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 FontanaF_2023__SRR20746839__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_92__bin.4 95.77922078 0.180280246 193 1654529 36.33 11566 SAMN40695479 SRR28523295 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_92__bin.13 89.20888272 1.65394402 192 2167207 37.51 19570 SAMN40695479 SRR28523295 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_418__bin.8 CM_UNINA_FFOOD__FFOOD_418__bin.8 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus petauri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_92__bin.17 93.85912101 0.82781457 177 1754770 40.08 13525 SAMN40695479 SRR28523295 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001885995.1_ASM188599v1_genomic GCF_001885995.1_ASM188599v1_genomic Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_G Enterococcus G italicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_92__bin.22 81.22251877 0.74906367 134 1378177 37.73 14761 SAMN40695479 SRR28523295 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 MASTER_WP4_UNINA_1__PM012_71775__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_92__bin.2 85.55133929 0.677083333 292 1862528 44.62 7930 SAMN40695479 SRR28523295 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_94__bin.2 96.19791667 2.395833333 148 2140109 46.24 21000 SAMN40695488 SRR28523089 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_94__bin.1 97.34848485 0.189393939 53 2244671 35.02 67471 SAMN40695488 SRR28523089 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_94__bin.8 80.57288418 0.524017467 184 1248445 39.4 9521 SAMN40695488 SRR28523089 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_94__bin.6 81.92267503 0 248 2246091 35.1 15699 SAMN40695488 SRR28523089 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_94__bin.4 82.4296875 4.90625 723 2565383 42.13 3984 SAMN40695488 SRR28523089 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_61__bin.3 DeFilippisF_xxxx__DF_94__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus dabitei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_94__bin.3 74.18478261 0 42 1774606 46.92 67344 SAMN40695488 SRR28523089 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_95__bin.7 84.00730519 3.4375 161 2467321 45.81 27123 SAMN40695533 SRR28523160 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 DeFilippisF_xxxx__DS_50__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_95__bin.5 95.47101449 0.905797101 159 1706601 42.17 15478 SAMN40695533 SRR28523160 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_95__bin.2 96.22641509 2.037735849 206 2183792 34.93 18931 SAMN40695533 SRR28523160 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_95__bin.6 99.47643979 0.605894275 141 2212974 38.38 23886 SAMN40695533 SRR28523160 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_95__bin.1 83.19921875 1.168154762 211 1629115 49.98 8869 SAMN40695533 SRR28523160 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_003946095.1_ASM394609v1_genomic DeFilippisF_xxxx__DS_68__bin.16 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus lindianensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_95__bin.4 94.71795305 2.530541012 174 2015328 39.09 18293 SAMN40695533 SRR28523160 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_900116935.1_Chromosome_genomic GCF_900116935.1_Chromosome_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus Ligilactobacillus acidipiscis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_96__bin.2 98.91304348 0 71 2793079 46.68 68056 SAMN40695534 SRR28523159 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 DeFilippisF_xxxx__DF_96__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_96__bin.1 75.79937304 1.724137931 459 2188737 41.92 6116 SAMN40695534 SRR28523159 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_96__bin.5 93.60890615 3.010471204 350 2655778 53.55 9870 SAMN40695534 SRR28523159 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic DeFilippisF_xxxx__DF_96__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_96__bin.13 95.32894737 0.657894737 420 2522755 67.34 7714 SAMN40695534 SRR28523159 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 DeFilippisF_xxxx__DF_96__bin.13 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_96__bin.4 95.08196721 1.912568306 176 1579113 53.45 12935 SAMN40695534 SRR28523159 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 FontanaF_2023__SRR20746839__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_96__bin.15 96.4375 1.25 108 2506388 46.02 35648 SAMN40695534 SRR28523159 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_96__bin.15 DeFilippisF_xxxx__DF_96__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parafarraginis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_96__bin.7 67.35844185 0.454545455 277 972719 51.74 3867 SAMN40695534 SRR28523159 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_96__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_96__bin.14 70.92317201 0.957792208 413 1454429 37.2 3892 SAMN40695534 SRR28523159 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_S8 MAG_S8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_96__bin.11 93.10154525 3.145695364 476 2387444 71.83 6483 SAMN40695534 SRR28523159 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_286__bin.4 DeFilippisF_xxxx__DF_96__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia kristinae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_96__bin.12 99.2248062 0.883474837 61 1958726 34.72 146397 SAMN40695534 SRR28523159 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_96__bin.12 DeFilippisF_xxxx__DF_96__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus paragasseri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_99__bin.1 93.38624339 0 118 1296297 38.11 17556 SAMN40695520 SRR28523238 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_FFoQSI_3__VB09-26__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DeFilippisF_xxxx__DF_99__bin.2 90.3081761 2.716981132 247 1922382 39.08 10195 SAMN40695520 SRR28523238 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 DeFilippisF_xxxx__DF_99__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DuruIC_2018__ERS2061097__bin.3 99.24528302 0.188679245 106 2166196 35 29406 ERS2061097 ERR2226381 Finland PRJEB23938 ERP105717 NCBI Duru, I.C., Laine, P., Andreevskaya, M., Paulin, L., Kananen, S., Tynkkynen, S., Auvinen, P., and Smolander, O.-P. (2018). Metagenomic and metatranscriptomic analysis of the microbial community in Swiss-type Maasdam cheese during ripening. Int. J. Food Microbiol. 281, 10–22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DuruIC_2018__ERS2061097__bin.2 86.70798898 0 140 1655597 36.18 19654 ERS2061097 ERR2226381 Finland PRJEB23938 ERP105717 NCBI Duru, I.C., Laine, P., Andreevskaya, M., Paulin, L., Kananen, S., Tynkkynen, S., Auvinen, P., and Smolander, O.-P. (2018). Metagenomic and metatranscriptomic analysis of the microbial community in Swiss-type Maasdam cheese during ripening. Int. J. Food Microbiol. 281, 10–22. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DuruIC_2018__ERS2061098__bin.1 98.01886792 0.566037736 105 2106929 35.05 28566 ERS2061098 ERR2226382 Finland PRJEB23938 ERP105717 NCBI Duru, I.C., Laine, P., Andreevskaya, M., Paulin, L., Kananen, S., Tynkkynen, S., Auvinen, P., and Smolander, O.-P. (2018). Metagenomic and metatranscriptomic analysis of the microbial community in Swiss-type Maasdam cheese during ripening. Int. J. Food Microbiol. 281, 10–22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DuruIC_2018__ERS2061098__bin.3 96.82017544 0.328947368 327 2300791 66.97 9926 ERS2061098 ERR2226382 Finland PRJEB23938 ERP105717 NCBI Duru, I.C., Laine, P., Andreevskaya, M., Paulin, L., Kananen, S., Tynkkynen, S., Auvinen, P., and Smolander, O.-P. (2018). Metagenomic and metatranscriptomic analysis of the microbial community in Swiss-type Maasdam cheese during ripening. Int. J. Food Microbiol. 281, 10–22. CM_UNINA_FFOOD__FFOOD_408__bin.5 DuruIC_2018__ERS2061100__bin.2 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DuruIC_2018__ERS2061098__bin.4 79.56513184 0 130 1487306 36.47 16418 ERS2061098 ERR2226382 Finland PRJEB23938 ERP105717 NCBI Duru, I.C., Laine, P., Andreevskaya, M., Paulin, L., Kananen, S., Tynkkynen, S., Auvinen, P., and Smolander, O.-P. (2018). Metagenomic and metatranscriptomic analysis of the microbial community in Swiss-type Maasdam cheese during ripening. Int. J. Food Microbiol. 281, 10–22. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DuruIC_2018__ERS2061099__bin.5 97.64150943 0 112 2105967 35.04 28566 ERS2061099 ERR2226383 Finland PRJEB23938 ERP105717 NCBI Duru, I.C., Laine, P., Andreevskaya, M., Paulin, L., Kananen, S., Tynkkynen, S., Auvinen, P., and Smolander, O.-P. (2018). Metagenomic and metatranscriptomic analysis of the microbial community in Swiss-type Maasdam cheese during ripening. Int. J. Food Microbiol. 281, 10–22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DuruIC_2018__ERS2061099__bin.2 63.58552632 0.657894737 505 1448682 66.69 3005 ERS2061099 ERR2226383 Finland PRJEB23938 ERP105717 NCBI Duru, I.C., Laine, P., Andreevskaya, M., Paulin, L., Kananen, S., Tynkkynen, S., Auvinen, P., and Smolander, O.-P. (2018). Metagenomic and metatranscriptomic analysis of the microbial community in Swiss-type Maasdam cheese during ripening. Int. J. Food Microbiol. 281, 10–22. CM_UNINA_FFOOD__FFOOD_408__bin.5 DuruIC_2018__ERS2061100__bin.2 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DuruIC_2018__ERS2061099__bin.3 64.8735734 0 132 1334822 36.46 15231 ERS2061099 ERR2226383 Finland PRJEB23938 ERP105717 NCBI Duru, I.C., Laine, P., Andreevskaya, M., Paulin, L., Kananen, S., Tynkkynen, S., Auvinen, P., and Smolander, O.-P. (2018). Metagenomic and metatranscriptomic analysis of the microbial community in Swiss-type Maasdam cheese during ripening. Int. J. Food Microbiol. 281, 10–22. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DuruIC_2018__ERS2061100__bin.1 98.86792453 1.132075472 114 2125418 35.11 28442 ERS2061100 ERR2226384 Finland PRJEB23938 ERP105717 NCBI Duru, I.C., Laine, P., Andreevskaya, M., Paulin, L., Kananen, S., Tynkkynen, S., Auvinen, P., and Smolander, O.-P. (2018). Metagenomic and metatranscriptomic analysis of the microbial community in Swiss-type Maasdam cheese during ripening. Int. J. Food Microbiol. 281, 10–22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DuruIC_2018__ERS2061100__bin.2 99.01315789 0.657894737 258 2396685 67.02 13841 ERS2061100 ERR2226384 Finland PRJEB23938 ERP105717 NCBI Duru, I.C., Laine, P., Andreevskaya, M., Paulin, L., Kananen, S., Tynkkynen, S., Auvinen, P., and Smolander, O.-P. (2018). Metagenomic and metatranscriptomic analysis of the microbial community in Swiss-type Maasdam cheese during ripening. Int. J. Food Microbiol. 281, 10–22. CM_UNINA_FFOOD__FFOOD_408__bin.5 DuruIC_2018__ERS2061100__bin.2 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DuruIC_2018__ERS2061100__bin.3 97.74695002 0 164 1850094 36.15 17046 ERS2061100 ERR2226384 Finland PRJEB23938 ERP105717 NCBI Duru, I.C., Laine, P., Andreevskaya, M., Paulin, L., Kananen, S., Tynkkynen, S., Auvinen, P., and Smolander, O.-P. (2018). Metagenomic and metatranscriptomic analysis of the microbial community in Swiss-type Maasdam cheese during ripening. Int. J. Food Microbiol. 281, 10–22. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DuruIC_2018__ERS2061101__bin.2 68.96226415 0 68 1294390 35.3 28442 ERS2061101 ERR2226385 Finland PRJEB23938 ERP105717 NCBI Duru, I.C., Laine, P., Andreevskaya, M., Paulin, L., Kananen, S., Tynkkynen, S., Auvinen, P., and Smolander, O.-P. (2018). Metagenomic and metatranscriptomic analysis of the microbial community in Swiss-type Maasdam cheese during ripening. Int. J. Food Microbiol. 281, 10–22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DuruIC_2018__ERS2061101__bin.3 51.20188609 0.543478261 528 1528331 46.6 3054 ERS2061101 ERR2226385 Finland PRJEB23938 ERP105717 NCBI Duru, I.C., Laine, P., Andreevskaya, M., Paulin, L., Kananen, S., Tynkkynen, S., Auvinen, P., and Smolander, O.-P. (2018). Metagenomic and metatranscriptomic analysis of the microbial community in Swiss-type Maasdam cheese during ripening. Int. J. Food Microbiol. 281, 10–22. CM_UNINA_FFOOD__FFOOD_337__bin.6 DuruIC_2018__ERS2061101__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DuruIC_2018__ERS2061101__bin.1 97.07792208 0 165 1809807 36.27 16559 ERS2061101 ERR2226385 Finland PRJEB23938 ERP105717 NCBI Duru, I.C., Laine, P., Andreevskaya, M., Paulin, L., Kananen, S., Tynkkynen, S., Auvinen, P., and Smolander, O.-P. (2018). Metagenomic and metatranscriptomic analysis of the microbial community in Swiss-type Maasdam cheese during ripening. Int. J. Food Microbiol. 281, 10–22. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DuruIC_2018__ERS2061102__bin.3 98.39622642 0.188679245 98 2107342 35.01 35023 ERS2061102 ERR2226386 Finland PRJEB23938 ERP105717 NCBI Duru, I.C., Laine, P., Andreevskaya, M., Paulin, L., Kananen, S., Tynkkynen, S., Auvinen, P., and Smolander, O.-P. (2018). Metagenomic and metatranscriptomic analysis of the microbial community in Swiss-type Maasdam cheese during ripening. Int. J. Food Microbiol. 281, 10–22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DuruIC_2018__ERS2061102__bin.2 95.72368421 0 315 2323205 67.01 10483 ERS2061102 ERR2226386 Finland PRJEB23938 ERP105717 NCBI Duru, I.C., Laine, P., Andreevskaya, M., Paulin, L., Kananen, S., Tynkkynen, S., Auvinen, P., and Smolander, O.-P. (2018). Metagenomic and metatranscriptomic analysis of the microbial community in Swiss-type Maasdam cheese during ripening. Int. J. Food Microbiol. 281, 10–22. CM_UNINA_FFOOD__FFOOD_408__bin.5 DuruIC_2018__ERS2061100__bin.2 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months DuruIC_2018__ERS2061102__bin.4 65.68526171 0 109 1251530 36.63 17687 ERS2061102 ERR2226386 Finland PRJEB23938 ERP105717 NCBI Duru, I.C., Laine, P., Andreevskaya, M., Paulin, L., Kananen, S., Tynkkynen, S., Auvinen, P., and Smolander, O.-P. (2018). Metagenomic and metatranscriptomic analysis of the microbial community in Swiss-type Maasdam cheese during ripening. Int. J. Food Microbiol. 281, 10–22. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months EscobarZepedaA_2016__SRS974112__bin.30 96.5625 0.208333333 147 2006407 46.45 18731 SRS974112 SRR2081070 Mexico PRJNA286900 SRP059999 NCBI Escobar-Zepeda, A., Sanchez-Flores, A., and Quirasco Baruch, M. (2016). Metagenomic analysis of a Mexican ripened cheese reveals a unique complex microbiota. Food Microbiol. 57, 116–127. MotaGutierrezJ_2021__SRR11602150__bin.9 DeFilippisF_xxxx__DS_50__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months EscobarZepedaA_2016__SRS974112__bin.19 94.57070707 0.883838384 157 2084222 35.27 21317 SRS974112 SRR2081070 Mexico PRJNA286900 SRP059999 NCBI Escobar-Zepeda, A., Sanchez-Flores, A., and Quirasco Baruch, M. (2016). Metagenomic analysis of a Mexican ripened cheese reveals a unique complex microbiota. Food Microbiol. 57, 116–127. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months EscobarZepedaA_2016__SRS974112__bin.1 93.36419753 2.263374486 296 2350224 45.21 9649 SRS974112 SRR2081070 Mexico PRJNA286900 SRP059999 NCBI Escobar-Zepeda, A., Sanchez-Flores, A., and Quirasco Baruch, M. (2016). Metagenomic analysis of a Mexican ripened cheese reveals a unique complex microbiota. Food Microbiol. 57, 116–127. FalardeauJ_2023__SRR20811279__bin.3 AlvarezOrdonezA_xxxx__Q06-27__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months EscobarZepedaA_2016__SRS974112__bin.32 94.84732824 0.381679389 66 2027651 38.01 114226 SRS974112 SRR2081070 Mexico PRJNA286900 SRP059999 NCBI Escobar-Zepeda, A., Sanchez-Flores, A., and Quirasco Baruch, M. (2016). Metagenomic analysis of a Mexican ripened cheese reveals a unique complex microbiota. Food Microbiol. 57, 116–127. CM_UNINA_FFOOD__FFOOD_418__bin.8 CM_UNINA_FFOOD__FFOOD_418__bin.8 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus petauri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months EscobarZepedaA_2016__SRS974112__bin.34 93.76010101 2.121212121 246 2061067 58.14 10890 SRS974112 SRR2081070 Mexico PRJNA286900 SRP059999 NCBI Escobar-Zepeda, A., Sanchez-Flores, A., and Quirasco Baruch, M. (2016). Metagenomic analysis of a Mexican ripened cheese reveals a unique complex microbiota. Food Microbiol. 57, 116–127. CM_UNINA_FFOOD__FFOOD_290__bin.1 EscobarZepedaA_2016__SRS974112__bin.34 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia crudilactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months EscobarZepedaA_2016__SRS974112__bin.14 91.3405579 0.883002208 163 1758240 40.09 17047 SRS974112 SRR2081070 Mexico PRJNA286900 SRP059999 NCBI Escobar-Zepeda, A., Sanchez-Flores, A., and Quirasco Baruch, M. (2016). Metagenomic analysis of a Mexican ripened cheese reveals a unique complex microbiota. Food Microbiol. 57, 116–127. GCF_001885995.1_ASM188599v1_genomic EscobarZepedaA_2016__SRS974112__bin.14 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_G Enterococcus G italicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months EscobarZepedaA_2016__SRS974112__bin.21 89.3442623 0.182149362 140 1455478 38.79 17391 SRS974112 SRR2081070 Mexico PRJNA286900 SRP059999 NCBI Escobar-Zepeda, A., Sanchez-Flores, A., and Quirasco Baruch, M. (2016). Metagenomic analysis of a Mexican ripened cheese reveals a unique complex microbiota. Food Microbiol. 57, 116–127. C-R03.bin.7 EscobarZepedaA_2016__SRS974112__bin.21 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Bavariicoccus Bavariicoccus seileri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months EscobarZepedaA_2016__SRS974112__bin.18 56.37931034 0.862068966 221 2277595 43.96 14576 SRS974112 SRR2081070 Mexico PRJNA286900 SRP059999 NCBI Escobar-Zepeda, A., Sanchez-Flores, A., and Quirasco Baruch, M. (2016). Metagenomic analysis of a Mexican ripened cheese reveals a unique complex microbiota. Food Microbiol. 57, 116–127. FranciosaI_2021__SRR12227952__bin.4 EscobarZepedaA_2016__SRS974112__bin.18 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraplantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months EscobarZepedaA_2016__SRS974112__bin.26 97.13656388 0.220264317 113 2621314 55.71 36063 SRS974112 SRR2081070 Mexico PRJNA286900 SRP059999 NCBI Escobar-Zepeda, A., Sanchez-Flores, A., and Quirasco Baruch, M. (2016). Metagenomic analysis of a Mexican ripened cheese reveals a unique complex microbiota. Food Microbiol. 57, 116–127. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months EscobarZepedaA_2016__SRS974112__bin.12 84.60264901 4.370860927 480 2035591 72.13 5158 SRS974112 SRR2081070 Mexico PRJNA286900 SRP059999 NCBI Escobar-Zepeda, A., Sanchez-Flores, A., and Quirasco Baruch, M. (2016). Metagenomic analysis of a Mexican ripened cheese reveals a unique complex microbiota. Food Microbiol. 57, 116–127. CM_UNINA_FFOOD__FFOOD_286__bin.4 MAG_555 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia kristinae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months EscobarZepedaA_2016__SRS974112__bin.25 94.41121985 0.343320849 205 2244200 38.27 16303 SRS974112 SRR2081070 Mexico PRJNA286900 SRP059999 NCBI Escobar-Zepeda, A., Sanchez-Flores, A., and Quirasco Baruch, M. (2016). Metagenomic analysis of a Mexican ripened cheese reveals a unique complex microbiota. Food Microbiol. 57, 116–127. MASTER_WP4_TEAGASC_1__TGS12-29__bin.6 MASTER_WP4_UNINA_1__FO013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B faecium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months EscobarZepedaA_2016__SRS974112__bin.15 99.23245614 0 361 3177727 69.05 12763 SRS974112 SRR2081070 Mexico PRJNA286900 SRP059999 NCBI Escobar-Zepeda, A., Sanchez-Flores, A., and Quirasco Baruch, M. (2016). Metagenomic analysis of a Mexican ripened cheese reveals a unique complex microbiota. Food Microbiol. 57, 116–127. C-R09.bin.5 C-R09.bin.5 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Acidipropionibacterium Acidipropionibacterium acidipropionici cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months EscobarZepedaA_2016__SRS974112__bin.3 94.5026178 1.383694839 216 1842374 39.22 12586 SRS974112 SRR2081070 Mexico PRJNA286900 SRP059999 NCBI Escobar-Zepeda, A., Sanchez-Flores, A., and Quirasco Baruch, M. (2016). Metagenomic analysis of a Mexican ripened cheese reveals a unique complex microbiota. Food Microbiol. 57, 116–127. GCF_900116935.1_Chromosome_genomic GCF_900116935.1_Chromosome_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus Ligilactobacillus acidipiscis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months EscobarZepedaA_2016__SRS974112__bin.31 96.65697674 1.744186047 501 3374206 65.53 9954 SRS974112 SRR2081070 Mexico PRJNA286900 SRP059999 NCBI Escobar-Zepeda, A., Sanchez-Flores, A., and Quirasco Baruch, M. (2016). Metagenomic analysis of a Mexican ripened cheese reveals a unique complex microbiota. Food Microbiol. 57, 116–127. BertuzziAS_2018__ERS2032125__bin.2 EscobarZepedaA_2016__SRS974112__bin.31 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium linens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months EscobarZepedaA_2016__SRS974112__bin.10 89.28571429 1.373626374 132 1632439 39.87 19840 SRS974112 SRR2081070 Mexico PRJNA286900 SRP059999 NCBI Escobar-Zepeda, A., Sanchez-Flores, A., and Quirasco Baruch, M. (2016). Metagenomic analysis of a Mexican ripened cheese reveals a unique complex microbiota. Food Microbiol. 57, 116–127. YuY_2022__SRR16950700__bin.19 EscobarZepedaA_2016__SRS974112__bin.10 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Aerococcus Aerococcus urinaeequi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months EscobarZepedaA_2016__SRS974112__bin.17 83.98359344 0.140056022 332 1841788 59.47 6502 SRS974112 SRR2081070 Mexico PRJNA286900 SRP059999 NCBI Escobar-Zepeda, A., Sanchez-Flores, A., and Quirasco Baruch, M. (2016). Metagenomic analysis of a Mexican ripened cheese reveals a unique complex microbiota. Food Microbiol. 57, 116–127. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 EscobarZepedaA_2016__SRS974112__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months EscobarZepedaA_2016__SRS974112__bin.20 96.72131148 0.746224808 110 2003582 39.37 26126 SRS974112 SRR2081070 Mexico PRJNA286900 SRP059999 NCBI Escobar-Zepeda, A., Sanchez-Flores, A., and Quirasco Baruch, M. (2016). Metagenomic analysis of a Mexican ripened cheese reveals a unique complex microbiota. Food Microbiol. 57, 116–127. MAG_76 MAG_76 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Marinilactibacillus Marinilactibacillus piezotolerans A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months EscobarZepedaA_2016__SRS974112__bin.23 96.85863874 0.785340314 158 2433101 35.74 24394 SRS974112 SRR2081070 Mexico PRJNA286900 SRP059999 NCBI Escobar-Zepeda, A., Sanchez-Flores, A., and Quirasco Baruch, M. (2016). Metagenomic analysis of a Mexican ripened cheese reveals a unique complex microbiota. Food Microbiol. 57, 116–127. GCF_006007945.1_ASM600794v1_genomic GCF_006007945.1_ASM600794v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus futsaii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811131__bin.11 85.68 2.13 654 3681067 63.07 7087 SAMN30028979 SRR20811131 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. We6_bin.circ.9 FalardeauJ_2023__SRR20811293__bin.10 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811131__bin.13 56.96 0.07 29 2025604 53.59 123285 SAMN30028979 SRR20811131 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811293__bin.2 FalardeauJ_2023__SRR20811293__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella citrativorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811131__bin.3 93.14 1.7 398 2586162 68.83 8682 SAMN30028979 SRR20811131 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. 160 FalardeauJ_2023__SRR20811293__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811131__bin.4 88.44 0.82 220 2342815 34.95 19073 SAMN30028979 SRR20811131 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. DeFilippisF_xxxx__DF_100__bin.17 DeFilippisF_xxxx__DF_100__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Marinilactibacillus Marinilactibacillus psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811131__bin.5 83.45 0.29 30 1957050 34.9 187697 SAMN30028979 SRR20811131 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811131__bin.8 92.69 0.17 220 3537083 40.12 26322 SAMN30028979 SRR20811131 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811282__bin.3 FalardeauJ_2023__SRR20811131__bin.8 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811132__bin.1 92.58 1.84 401 2639771 34.62 11145 SAMN30028978 SRR20811132 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. DeFilippisF_xxxx__DF_100__bin.17 DeFilippisF_xxxx__DF_100__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Marinilactibacillus Marinilactibacillus psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811132__bin.11 61.83 0.15 585 1668966 68.65 2965 SAMN30028978 SRR20811132 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. 160 FalardeauJ_2023__SRR20811132__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811132__bin.15 77.94 0.58 40 1795745 34.83 120580 SAMN30028978 SRR20811132 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811132__bin.2 91.13 0.41 231 3476399 40.07 24474 SAMN30028978 SRR20811132 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811282__bin.3 FalardeauJ_2023__SRR20811131__bin.8 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811132__bin.7 74.38 0.11 36 2692033 53.91 108066 SAMN30028978 SRR20811132 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811293__bin.2 FalardeauJ_2023__SRR20811293__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella citrativorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811132__bin.8 82.72 0.29 180 2559472 42.1 19443 SAMN30028978 SRR20811132 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. 181 FalardeauJ_2023__SRR20811293__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811133__bin.1 86.02 0.39 446 2270213 33.14 6316 SAMN30028977 SRR20811133 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811133__bin.12 99.88 0.29 84 2517933 36.19 49411 SAMN30028977 SRR20811133 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. GCF_001703515.1_ASM170351v1_genomic GCF_001703515.1_ASM170351v1_genomic Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811133__bin.2 92.49 1.05 140 1771474 39.24 18882 SAMN30028977 SRR20811133 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811133__bin.3 76.96 0.4 79 3833763 47.89 90714 SAMN30028977 SRR20811133 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811137__bin.9 FalardeauJ_2023__SRR20811137__bin.9 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia paralvei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811133__bin.5 99.04 0.2 88 3536857 54.06 57997 SAMN30028977 SRR20811133 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. We6_bin.full.31 FalardeauJ_2023__SRR20811133__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811133__bin.6 99.79 3.64 393 3658783 56.36 15752 SAMN30028977 SRR20811133 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. DeFilippisF_xxxx__DF_114__bin.22 FalardeauJ_2023__SRR20811133__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811133__bin.8 90.84 0.64 755 4557183 58.44 8069 SAMN30028977 SRR20811133 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811134__bin.11 FalardeauJ_2023__SRR20811134__bin.11 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E taetrolens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811133__bin.9 99.88 2.35 239 3302090 43.06 29188 SAMN30028977 SRR20811133 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. 182 FalardeauJ_2023__SRR20811133__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811134__bin.1 61.65 1.14 241 1274574 35.32 6905 SAMN30028976 SRR20811134 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MAG_501 FalardeauJ_2023__SRR20811134__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811134__bin.11 100 0.74 138 4993414 58.22 52997 SAMN30028976 SRR20811134 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811134__bin.11 FalardeauJ_2023__SRR20811134__bin.11 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E taetrolens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811134__bin.3 95.85 2.44 426 3010653 42.68 9648 SAMN30028976 SRR20811134 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MASTER_WP4_CSIC_2__P2578__bin.9 FalardeauJ_2023__SRR20811134__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811134__bin.4 99.59 1.93 115 2487252 36.3 41781 SAMN30028976 SRR20811134 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. GCF_001703515.1_ASM170351v1_genomic GCF_001703515.1_ASM170351v1_genomic Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811134__bin.6 99.69 0.13 69 1796319 39.27 39565 SAMN30028976 SRR20811134 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811134__bin.7 89.39 0.94 146 1922107 39.3 21397 SAMN30028976 SRR20811134 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811134__bin.8 100 0.71 103 4531913 48.35 75934 SAMN30028976 SRR20811134 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811137__bin.9 FalardeauJ_2023__SRR20811137__bin.9 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia paralvei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811134__bin.9 57.96 1.29 658 2092674 56.3 3483 SAMN30028976 SRR20811134 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. DeFilippisF_xxxx__DF_114__bin.22 FalardeauJ_2023__SRR20811134__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811136__bin.1 63.74 3.36 590 1916732 34.22 3599 SAMN30028975 SRR20811136 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MAG_501 FalardeauJ_2023__SRR20811136__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811136__bin.2 91.44 0.11 59 1670311 39.21 39565 SAMN30028975 SRR20811136 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811136__bin.3 86.76 2.35 162 1835930 39.41 17360 SAMN30028975 SRR20811136 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811136__bin.5 90.98 4.28 214 2281658 35.5 16441 SAMN30028975 SRR20811136 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811137__bin.1 54.92 0.22 443 1967695 56.53 4983 SAMN30028974 SRR20811137 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. DeFilippisF_xxxx__DF_114__bin.22 FalardeauJ_2023__SRR20811133__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811137__bin.10 96.61 3.52 111 2057058 39.09 30679 SAMN30028974 SRR20811137 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811137__bin.11 91.73 0.63 74 1669820 39.25 29545 SAMN30028974 SRR20811137 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811137__bin.5 79.31 0.35 182 2015363 34.64 16388 SAMN30028974 SRR20811137 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811137__bin.8 99.39 0.27 44 2526533 36.26 141055 SAMN30028974 SRR20811137 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. GCF_001703515.1_ASM170351v1_genomic GCF_001703515.1_ASM170351v1_genomic Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811137__bin.9 100 0.09 112 4610398 48.09 63931 SAMN30028974 SRR20811137 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811137__bin.9 FalardeauJ_2023__SRR20811137__bin.9 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia paralvei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811138__bin.2 99.85 4.56 161 2230131 35.72 21643 SAMN30028973 SRR20811138 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811138__bin.3 88.24 1.36 44 1610740 39.22 56947 SAMN30028973 SRR20811138 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811138__bin.4 76.5 2.5 690 3115438 56.37 5223 SAMN30028973 SRR20811138 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. DeFilippisF_xxxx__DF_114__bin.22 FalardeauJ_2023__SRR20811140__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811138__bin.5 62.59 0.42 18 1787357 33.16 153520 SAMN30028973 SRR20811138 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. YangC_2021__SRR13259377__bin.4 AlvarezOrdonezA_xxxx__Q06-30__bin.11 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811139__bin.4 89.65 1.29 45 1636306 39.09 81810 SAMN30028972 SRR20811139 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811140__bin.2 92.3 2.1 136 2038228 34.96 23806 SAMN30028971 SRR20811140 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811140__bin.4 90.73 0.8 60 3257272 56.29 74246 SAMN30028971 SRR20811140 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. DeFilippisF_xxxx__DF_114__bin.22 FalardeauJ_2023__SRR20811140__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811140__bin.6 63.32 0.03 17 2427457 54.44 215611 SAMN30028971 SRR20811140 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. We6_bin.full.31 DeFilippisF_xxxx__DF_85__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811143__bin.1 84.44 0.33 87 1926876 35.57 35311 SAMN30028968 SRR20811143 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811144__bin.3 94.12 2.8 123 2100723 35.65 27332 SAMN30028967 SRR20811144 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811145__bin.1 52.2 0.03 71 1107306 34.97 22356 SAMN30028966 SRR20811145 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811145__bin.2 94.45 0.58 51 2045461 39.02 60873 SAMN30028966 SRR20811145 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. WalshL_xxxx__V9__bin.2 WalshL_xxxx__V9__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811145__bin.3 59.12 4.36 112 1567030 35.42 18834 SAMN30028966 SRR20811145 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 FalardeauJ_2023__SRR20811145__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811147__bin.5 85.85 1.17 144 1900985 35.52 18578 SAMN30028965 SRR20811147 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811148__bin.2 63.83 4.08 94 1429405 35.56 21361 SAMN30028964 SRR20811148 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811148__bin.5 84.11 2.57 135 2010023 34.84 20785 SAMN30028964 SRR20811148 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811149__bin.3 80.91 0.21 115 1765895 35.56 19790 SAMN30028963 SRR20811149 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811150__bin.5 61.14 0.34 47 1032195 39.68 30262 SAMN30028962 SRR20811150 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811150__bin.6 63.07 0.26 96 1431008 35.15 21571 SAMN30028962 SRR20811150 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811150__bin.7 56.95 0.04 36 1258006 35.4 52183 SAMN30028962 SRR20811150 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. DeFilippisF_xxxx__DF_100__bin.17 FalardeauJ_2023__SRR20811150__bin.7 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Marinilactibacillus Marinilactibacillus psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811150__bin.8 56.6 0.92 72 1145648 35.83 24663 SAMN30028962 SRR20811150 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811151__bin.1 99.61 0.37 337 4043686 62.89 18394 SAMN30028961 SRR20811151 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. We6_bin.circ.9 FalardeauJ_2023__SRR20811153__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811151__bin.12 89.18 0.99 209 3211792 56.42 28954 SAMN30028961 SRR20811151 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. DeFilippisF_xxxx__DF_114__bin.22 MASTER_WP4_UNINA_1__FO005_71775__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811152__bin.1 50.5 1.53 725 1982943 63.21 2820 SAMN30028960 SRR20811152 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. We6_bin.circ.9 FalardeauJ_2023__SRR20811153__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811152__bin.2 89.21 1.61 131 2731401 47.06 35702 SAMN30028960 SRR20811152 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MASTER_WP4_CSIC_2__P2584__bin.5 FalardeauJ_2023__SRR20811152__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter celer cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811152__bin.3 99.93 0.43 77 2635327 32.99 62971 SAMN30028960 SRR20811152 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811152__bin.7 81.11 4.63 151 1988594 35.52 19738 SAMN30028960 SRR20811152 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811152__bin.8 80.57 4.09 528 2763559 42.97 6460 SAMN30028960 SRR20811152 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. 182 FalardeauJ_2023__SRR20811152__bin.8 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811153__bin.2 84.74 1.77 155 2465596 42.97 25880 SAMN30028959 SRR20811153 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. 182 FalardeauJ_2023__SRR20811153__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811153__bin.3 99.99 0.37 107 4069449 62.9 60126 SAMN30028959 SRR20811153 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. We6_bin.circ.9 FalardeauJ_2023__SRR20811153__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811153__bin.6 51.05 1.9 391 1006946 36.64 2608 SAMN30028959 SRR20811153 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 FalardeauJ_2023__SRR20811153__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811153__bin.7 91.17 2.26 370 2506053 33.11 10463 SAMN30028959 SRR20811153 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811174__bin.1 92.69 2.48 135 2692130 47.23 29131 SAMN30028958 SRR20811174 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MASTER_WP4_CSIC_2__P2584__bin.5 FalardeauJ_2023__SRR20811152__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter celer cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811174__bin.2 77.79 1.09 422 2105995 34.41 6291 SAMN30028958 SRR20811174 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MAG_501 FalardeauJ_2023__SRR20811174__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811174__bin.3 78.37 1.95 469 2769028 43.02 7372 SAMN30028958 SRR20811174 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. 182 FalardeauJ_2023__SRR20811174__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811174__bin.4 99.85 2.13 205 2728879 33.01 24177 SAMN30028958 SRR20811174 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811175__bin.6 99.29 0.1 91 1710753 42.1 30479 SAMN30028957 SRR20811175 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811176__bin.1 58.86 2.74 534 1581796 33.64 3064 SAMN30028956 SRR20811176 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811179__bin.4 FalardeauJ_2023__SRR20811176__bin.1 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Carnobacterium_A NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811176__bin.2 77.45 1.63 161 1300148 42.45 12019 SAMN30028956 SRR20811176 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811176__bin.3 78.48 1.74 730 2700762 40.37 4035 SAMN30028956 SRR20811176 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MacoriG_2019__CS_R33__bin.1 FalardeauJ_2023__SRR20811176__bin.3 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio hibernica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811176__bin.4 84.23 0.88 130 2117556 35.49 33185 SAMN30028956 SRR20811176 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811178__bin.2 90.94 0.38 86 1649371 42.21 28125 SAMN30028955 SRR20811178 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811178__bin.3 84.22 1.5 103 1982956 35.6 29904 SAMN30028955 SRR20811178 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811179__bin.11 99.29 2.55 520 2744014 32.88 6954 SAMN30028954 SRR20811179 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. YangC_2021__SRR13259378__bin.4 FalardeauJ_2023__SRR20811179__bin.11 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811179__bin.3 92.02 0.48 94 1712127 42.08 31984 SAMN30028954 SRR20811179 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811179__bin.4 77.76 0.99 93 1661173 34.37 28487 SAMN30028954 SRR20811179 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811179__bin.4 FalardeauJ_2023__SRR20811179__bin.4 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Carnobacterium_A NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811179__bin.8 74.32 0.84 88 1688475 35.65 26916 SAMN30028954 SRR20811179 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811179__bin.9 78.32 2.92 235 1976234 34.53 13192 SAMN30028954 SRR20811179 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811221__bin.12 99.99 0.2 172 3010691 67.68 35451 SAMN30029009 SRR20811221 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811223__bin.4 FalardeauJ_2023__SRR20811223__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811221__bin.13 68.24 2.5 427 1301131 38.83 3206 SAMN30029009 SRR20811221 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. C-R03.bin.7 FalardeauJ_2023__SRR20811221__bin.13 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Bavariicoccus Bavariicoccus seileri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811221__bin.2 89.94 0.29 402 2547153 68.96 9156 SAMN30029009 SRR20811221 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. 160 FalardeauJ_2023__SRR20811221__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811221__bin.3 99.86 0.09 89 1822268 38.92 39885 SAMN30029009 SRR20811221 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811221__bin.5 81.49 0.25 47 1362200 50.46 60886 SAMN30029009 SRR20811221 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811221__bin.6 85.98 0.2 250 2745779 42.04 16459 SAMN30029009 SRR20811221 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. 181 FalardeauJ_2023__SRR20811221__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811221__bin.7 97.37 3.41 701 3462298 40.42 6126 SAMN30029009 SRR20811221 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. ODFM-BA-A-0160-001_Vibrio_casei_JB196 ODFM-BA-A-0160-001_Vibrio_casei_JB196 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811222__bin.12 99.94 0.71 167 2940783 67.8 30405 SAMN30029008 SRR20811222 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811223__bin.4 FalardeauJ_2023__SRR20811223__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811222__bin.13 82.54 0.03 234 2698733 42.02 19438 SAMN30029008 SRR20811222 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. 181 FalardeauJ_2023__SRR20811221__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811222__bin.14 60.15 0.13 39 1051231 39.84 59318 SAMN30029008 SRR20811222 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811222__bin.15 95.04 1.71 278 1915893 38.6 10553 SAMN30029008 SRR20811222 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. C-R03.bin.7 FalardeauJ_2023__SRR20811223__bin.3 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Bavariicoccus Bavariicoccus seileri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811222__bin.2 93.91 3.61 434 2885547 68.4 9551 SAMN30029008 SRR20811222 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. 160 FalardeauJ_2023__SRR20811221__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811222__bin.4 72.35 0.07 41 1191375 50.7 58313 SAMN30029008 SRR20811222 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811223__bin.1 93.23 2.09 369 2613146 68.81 10227 SAMN30029007 SRR20811223 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. 160 FalardeauJ_2023__SRR20811221__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811223__bin.13 53.44 2.35 784 2156766 68.61 2813 SAMN30029007 SRR20811223 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. ODFM-BA-A-0156-001_Mycetocola_reblochoni_JCM_30549 FalardeauJ_2023__SRR20811223__bin.13 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Mycetocola_B Mycetocola B reblochoni cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811223__bin.2 85.77 2.73 397 1704533 27.49 5014 SAMN30029007 SRR20811223 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MASTER_WP4_UNINA_1__FO007_71775__bin.32 FalardeauJ_2023__SRR20811223__bin.2 Fusobacteriota;Fusobacteriia;Fusobacteriales;Fusobacteriaceae;Fusobacterium_B Fusobacterium B sp041668805 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811223__bin.3 98.45 0.98 186 2039735 38.59 18030 SAMN30029007 SRR20811223 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. C-R03.bin.7 FalardeauJ_2023__SRR20811223__bin.3 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Bavariicoccus Bavariicoccus seileri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811223__bin.4 99.99 0.18 131 2975154 67.67 50498 SAMN30029007 SRR20811223 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811223__bin.4 FalardeauJ_2023__SRR20811223__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811223__bin.5 80.79 0.39 101 1394246 51.05 21225 SAMN30029007 SRR20811223 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811223__bin.6 83.54 0.05 235 2675579 41.87 17297 SAMN30029007 SRR20811223 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. 181 FalardeauJ_2023__SRR20811221__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811223__bin.7 71.94 2.24 457 1476855 33.8 3563 SAMN30029007 SRR20811223 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MASTER_WP4_FFoQSI_1__VB-09-AG__bin.31 FalardeauJ_2023__SRR20811223__bin.7 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;Psychroflexus Psychroflexus halocasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811224__bin.10 81.34 2.23 439 2048661 68.91 5650 SAMN30029006 SRR20811224 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. 160 FalardeauJ_2023__SRR20811221__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811224__bin.2 83.43 1.89 122 1475701 50.85 19372 SAMN30029006 SRR20811224 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811224__bin.3 61.55 1.58 439 1366598 38.92 3266 SAMN30029006 SRR20811224 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. Wy2_bin.circ.1 FalardeauJ_2023__SRR20811224__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811224__bin.5 78.97 2.84 674 2647887 65.71 4544 SAMN30029006 SRR20811224 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811224__bin.5 FalardeauJ_2023__SRR20811224__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Galactobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811224__bin.6 96.8 1.65 180 1940066 38.64 17448 SAMN30029006 SRR20811224 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. C-R03.bin.7 FalardeauJ_2023__SRR20811223__bin.3 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Bavariicoccus Bavariicoccus seileri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811224__bin.7 85.47 1.87 535 2636404 42.02 6200 SAMN30029006 SRR20811224 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. 181 FalardeauJ_2023__SRR20811221__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811224__bin.8 99.99 0.2 139 2913370 67.77 40684 SAMN30029006 SRR20811224 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811223__bin.4 FalardeauJ_2023__SRR20811223__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811227__bin.3 97.54 0.58 53 1717934 39.07 57874 SAMN30029005 SRR20811227 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811227__bin.4 91.59 4.13 458 3279852 42.8 9639 SAMN30029005 SRR20811227 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. 182 FalardeauJ_2023__SRR20811227__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811227__bin.6 86.63 0.12 194 3236301 40.08 29096 SAMN30029005 SRR20811227 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811282__bin.3 FalardeauJ_2023__SRR20811282__bin.3 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811228__bin.1 83.63 4.1 199 1792570 35.02 13496 SAMN30029004 SRR20811228 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811228__bin.4 51.72 0.06 22 860037 39.57 72958 SAMN30029004 SRR20811228 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811228__bin.6 99.43 0.25 85 3533908 39.9 76085 SAMN30029004 SRR20811228 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811282__bin.3 FalardeauJ_2023__SRR20811282__bin.3 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811229__bin.1 63.58 0.24 23 1037628 39.66 100739 SAMN30029003 SRR20811229 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811229__bin.4 62.26 0.34 44 2446399 39.66 106950 SAMN30029003 SRR20811229 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811282__bin.3 FalardeauJ_2023__SRR20811282__bin.3 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811270__bin.1 50.09 0.39 30 967997 38.81 52866 SAMN30029002 SRR20811270 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811271__bin.3 98.54 0.06 56 2797918 46.46 77972 SAMN30029001 SRR20811271 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FontanaF_2023__SRR20746951__bin.4 FalardeauJ_2023__SRR20811272__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811271__bin.6 63.88 0.69 383 2133984 42.85 6751 SAMN30029001 SRR20811271 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MASTER_WP4_CSIC_2__P2578__bin.9 FalardeauJ_2023__SRR20811271__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811271__bin.7 88.71 4.88 359 2918777 42.89 11296 SAMN30029001 SRR20811271 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811274__bin.6 FalardeauJ_2023__SRR20811274__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861365 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811271__bin.9 82.18 0.64 200 3120674 63.23 22019 SAMN30029001 SRR20811271 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. We6_bin.circ.9 FalardeauJ_2023__SRR20811153__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811272__bin.10 67.22 0.71 794 2643887 39.87 3749 SAMN30029000 SRR20811272 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811282__bin.3 FalardeauJ_2023__SRR20811272__bin.10 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811272__bin.11 99.76 0.04 56 2836101 46.46 76699 SAMN30029000 SRR20811272 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FontanaF_2023__SRR20746951__bin.4 FalardeauJ_2023__SRR20811272__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811272__bin.6 95.4 4.77 237 2282727 34.87 15749 SAMN30029000 SRR20811272 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811272__bin.7 83.93 0.68 226 3247737 63.15 22233 SAMN30029000 SRR20811272 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. We6_bin.circ.9 MAG_320 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811272__bin.8 99.98 4.11 159 3114252 42.88 34071 SAMN30029000 SRR20811272 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811274__bin.6 FalardeauJ_2023__SRR20811274__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861365 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811272__bin.9 99.95 1.96 217 2810914 32.58 20530 SAMN30029000 SRR20811272 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811273__bin.10 81.68 0.17 387 2826401 59.88 9304 SAMN30028999 SRR20811273 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MAG_323 MAG_323 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811273__bin.2 68.11 2.75 646 2057056 32.37 3510 SAMN30028999 SRR20811273 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811273__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811273__bin.3 83.87 2.88 320 2671300 42.91 11004 SAMN30028999 SRR20811273 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811274__bin.6 FalardeauJ_2023__SRR20811274__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861365 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811273__bin.5 69.84 1.81 325 2252801 42.79 8113 SAMN30028999 SRR20811273 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MASTER_WP4_CSIC_2__P2578__bin.9 MASTER_WP4_CSIC_2__P2578__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811273__bin.8 83.42 0.68 205 3132026 63.28 22748 SAMN30028999 SRR20811273 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. We6_bin.circ.9 MAG_320 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811274__bin.2 99.99 0.09 64 2786991 32.66 97591 SAMN30028998 SRR20811274 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811274__bin.4 86.34 2.02 307 3335627 63.19 17909 SAMN30028998 SRR20811274 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. We6_bin.circ.9 MAG_320 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811274__bin.6 99.88 0.16 96 3056506 42.9 50263 SAMN30028998 SRR20811274 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811274__bin.6 FalardeauJ_2023__SRR20811274__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861365 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811275__bin.3 63.49 1.89 818 2846727 47.86 3795 SAMN30028997 SRR20811275 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811137__bin.9 FalardeauJ_2023__SRR20811276__bin.13 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia paralvei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811275__bin.4 92.32 4.7 349 2351296 43.76 9053 SAMN30028997 SRR20811275 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811275__bin.5 98.72 2.06 132 2417726 36.48 28891 SAMN30028997 SRR20811275 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. GCF_001703515.1_ASM170351v1_genomic GCF_001703515.1_ASM170351v1_genomic Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811275__bin.7 83.46 2.27 290 1923589 38.32 9569 SAMN30028997 SRR20811275 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. Wy2_bin.circ.1 MAG_392 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811275__bin.8 84.52 2.4 667 3331468 48.45 6278 SAMN30028997 SRR20811275 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811275__bin.8 FalardeauJ_2023__SRR20811275__bin.8 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Morganella Morganella psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811275__bin.9 60.83 0.11 33 3045829 58.38 161014 SAMN30028997 SRR20811275 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811134__bin.11 FalardeauJ_2023__SRR20811134__bin.11 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E taetrolens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811276__bin.10 79.77 0.05 84 1493456 39.2 38569 SAMN30028996 SRR20811276 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. Wy2_bin.circ.1 MAG_392 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811276__bin.11 96.67 2.02 377 3164795 42.98 14088 SAMN30028996 SRR20811276 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. 182 FalardeauJ_2023__SRR20811133__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811276__bin.12 96.29 1.46 266 1669594 42.15 8113 SAMN30028996 SRR20811276 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811276__bin.13 99.96 0.17 60 4647997 48.05 180868 SAMN30028996 SRR20811276 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811137__bin.9 FalardeauJ_2023__SRR20811276__bin.13 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia paralvei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811276__bin.14 99.97 0.27 97 3207437 44.55 51232 SAMN30028996 SRR20811276 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811276__bin.2 53.16 1.1 609 1873745 56.63 3255 SAMN30028996 SRR20811276 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. DeFilippisF_xxxx__DF_114__bin.22 FalardeauJ_2023__SRR20811276__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811276__bin.4 99.94 0.44 58 2397636 43.72 64781 SAMN30028996 SRR20811276 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811276__bin.5 51.45 1.61 568 1496061 37.86 2683 SAMN30028996 SRR20811276 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MASTER_WP4_UNINA_1__TA012_71775__bin.5 FalardeauJ_2023__SRR20811276__bin.5 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus_D Vagococcus D salmoninarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811276__bin.7 90.47 4.65 582 3583757 48.55 8427 SAMN30028996 SRR20811276 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811275__bin.8 FalardeauJ_2023__SRR20811276__bin.7 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Morganella Morganella psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811276__bin.8 89.12 1.11 399 2357091 46.94 8169 SAMN30028996 SRR20811276 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FontanaF_2023__SRR20746951__bin.4 FalardeauJ_2023__SRR20811276__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811276__bin.9 99.95 4.13 125 2563038 36.41 45329 SAMN30028996 SRR20811276 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. GCF_001703515.1_ASM170351v1_genomic GCF_001703515.1_ASM170351v1_genomic Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811278__bin.2 72.49 0.03 27 3499615 58.39 191214 SAMN30028995 SRR20811278 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811134__bin.11 FalardeauJ_2023__SRR20811134__bin.11 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E taetrolens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811278__bin.7 63.84 0.06 58 1210436 39.23 38651 SAMN30028995 SRR20811278 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. Wy2_bin.circ.1 MAG_392 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811279__bin.1 92.54 0.76 253 2391578 43.74 15913 SAMN30028994 SRR20811279 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811279__bin.3 99.97 0.24 56 3111804 44.64 77653 SAMN30028994 SRR20811279 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811279__bin.4 57.2 0.17 29 946223 51.11 55402 SAMN30028994 SRR20811279 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811279__bin.7 85.61 1.2 408 2375797 46.88 7358 SAMN30028994 SRR20811279 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FontanaF_2023__SRR20746951__bin.4 FalardeauJ_2023__SRR20811279__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811280__bin.2 99.94 0.2 76 3921233 63.04 94523 SAMN30028993 SRR20811280 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. We6_bin.circ.9 FalardeauJ_2023__SRR20811282__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811280__bin.3 100 0.12 93 3789538 39.95 74542 SAMN30028993 SRR20811280 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811282__bin.3 FalardeauJ_2023__SRR20811282__bin.3 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811281__bin.3 100 0.55 121 4578632 48.91 54582 SAMN30028992 SRR20811281 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811283__bin.7 FalardeauJ_2023__SRR20811283__bin.7 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia alvei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811281__bin.6 97.98 0.17 270 3788582 39.95 23806 SAMN30028992 SRR20811281 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811282__bin.3 FalardeauJ_2023__SRR20811282__bin.3 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811281__bin.7 80.14 0.35 48 2877651 63.09 98212 SAMN30028992 SRR20811281 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. We6_bin.circ.9 FalardeauJ_2023__SRR20811282__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811281__bin.8 91.4 0.19 290 3022277 41.92 15160 SAMN30028992 SRR20811281 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. 181 FalardeauJ_2023__SRR20811281__bin.8 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811282__bin.2 100 0.21 58 4056103 63.05 103664 SAMN30028991 SRR20811282 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. We6_bin.circ.9 FalardeauJ_2023__SRR20811282__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811282__bin.3 99.98 0.09 101 3789556 39.95 74436 SAMN30028991 SRR20811282 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811282__bin.3 FalardeauJ_2023__SRR20811282__bin.3 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811282__bin.4 100 0.42 129 4796688 48.85 60116 SAMN30028991 SRR20811282 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811283__bin.7 FalardeauJ_2023__SRR20811283__bin.7 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia alvei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811282__bin.5 99.98 4.74 182 2237716 35.75 20716 SAMN30028991 SRR20811282 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811283__bin.2 86.85 2.19 646 3327955 39.88 6561 SAMN30028990 SRR20811283 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811282__bin.3 FalardeauJ_2023__SRR20811282__bin.3 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811283__bin.4 67.27 1.56 107 1567299 35.68 22676 SAMN30028990 SRR20811283 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811283__bin.5 90 1.95 250 2928053 41.94 15816 SAMN30028990 SRR20811283 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. 181 FalardeauJ_2023__SRR20811281__bin.8 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811283__bin.6 52.92 0.66 515 1576961 34.02 3268 SAMN30028990 SRR20811283 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MAG_501 FalardeauJ_2023__SRR20811283__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811283__bin.7 100 0.23 34 4677075 48.94 380662 SAMN30028990 SRR20811283 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811283__bin.7 FalardeauJ_2023__SRR20811283__bin.7 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia alvei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811283__bin.8 99.99 0.2 85 4047981 63.06 79525 SAMN30028990 SRR20811283 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. We6_bin.circ.9 FalardeauJ_2023__SRR20811282__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811284__bin.2 77.97 2.42 778 3216409 63.25 4748 SAMN30028989 SRR20811284 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. We6_bin.circ.9 FalardeauJ_2023__SRR20811284__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811284__bin.4 99.94 0.09 20 2540124 32.37 213265 SAMN30028989 SRR20811284 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811284__bin.4 FalardeauJ_2023__SRR20811284__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Mammaliicoccus Mammaliicoccus vitulinus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811284__bin.5 71.27 0.02 11 1976296 32.56 1022016 SAMN30028989 SRR20811284 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811284__bin.6 91.02 3.69 165 2189822 35.56 21180 SAMN30028989 SRR20811284 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811285__bin.1 99.94 0.09 24 2542142 32.36 138168 SAMN30028988 SRR20811285 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811284__bin.4 FalardeauJ_2023__SRR20811284__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Mammaliicoccus Mammaliicoccus vitulinus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811285__bin.2 100 0.06 20 2789345 32.65 219569 SAMN30028988 SRR20811285 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811285__bin.3 93.2 1.6 310 2063963 35.6 10448 SAMN30028988 SRR20811285 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811286__bin.1 96.09 0.12 24 2503155 32.34 141437 SAMN30028987 SRR20811286 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811284__bin.4 FalardeauJ_2023__SRR20811284__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Mammaliicoccus Mammaliicoccus vitulinus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811286__bin.2 99.47 0.1 25 2779645 32.57 219569 SAMN30028987 SRR20811286 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811287__bin.1 69.49 0.01 9 1807712 32.5 1030860 SAMN30028986 SRR20811287 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811287__bin.2 64.07 2.2 532 1752526 34.34 3835 SAMN30028986 SRR20811287 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MAG_501 FalardeauJ_2023__SRR20811287__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811287__bin.3 69.5 2.34 386 1158508 39.35 3238 SAMN30028986 SRR20811287 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 FalardeauJ_2023__SRR20811287__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811287__bin.5 91.51 2.18 160 2124663 35.61 19965 SAMN30028986 SRR20811287 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811287__bin.7 99.88 0.09 20 2529554 32.36 141437 SAMN30028986 SRR20811287 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811284__bin.4 FalardeauJ_2023__SRR20811284__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Mammaliicoccus Mammaliicoccus vitulinus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811289__bin.5 100 0.06 163 3781962 36.08 48110 SAMN30028985 SRR20811289 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811289__bin.5 FalardeauJ_2023__SRR20811289__bin.5 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Psychrobacillus Psychrobacillus psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811290__bin.4 62.95 2.19 674 2045107 42.18 3163 SAMN30028984 SRR20811290 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. 181 FalardeauJ_2023__SRR20811290__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811290__bin.6 99.74 0.07 130 3499963 36.28 55482 SAMN30028984 SRR20811290 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811289__bin.5 FalardeauJ_2023__SRR20811290__bin.6 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Psychrobacillus Psychrobacillus psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811290__bin.7 91.14 1.67 161 2003299 35.79 17504 SAMN30028984 SRR20811290 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811291__bin.10 99.98 0.57 142 3817882 35.98 68804 SAMN30028983 SRR20811291 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811289__bin.5 FalardeauJ_2023__SRR20811291__bin.10 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Psychrobacillus Psychrobacillus psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811291__bin.2 83.75 1.15 92 1837876 39.23 34191 SAMN30028983 SRR20811291 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811291__bin.8 63.93 0.46 77 1534309 35.59 29894 SAMN30028983 SRR20811291 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811292__bin.4 83.39 0.24 82 1796735 39.18 34979 SAMN30028982 SRR20811292 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811292__bin.8 82.9 0.02 38 2852331 42.49 128227 SAMN30028982 SRR20811292 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811292__bin.8 FalardeauJ_2023__SRR20811292__bin.8 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Sporosarcina Sporosarcina sp000813425 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811293__bin.10 99.92 0.62 166 3923799 62.86 39070 SAMN30028981 SRR20811293 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. We6_bin.circ.9 FalardeauJ_2023__SRR20811293__bin.10 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811293__bin.11 91.5 0.11 243 3529706 40.11 21116 SAMN30028981 SRR20811293 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811282__bin.3 FalardeauJ_2023__SRR20811131__bin.8 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811293__bin.2 99.94 0.36 54 3602449 54.27 130778 SAMN30028981 SRR20811293 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. FalardeauJ_2023__SRR20811293__bin.2 FalardeauJ_2023__SRR20811293__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella citrativorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811293__bin.3 84.47 0.14 201 2662909 42.14 17473 SAMN30028981 SRR20811293 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. 181 FalardeauJ_2023__SRR20811293__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811293__bin.5 94.8 1.29 446 2552904 68.7 7478 SAMN30028981 SRR20811293 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. 160 FalardeauJ_2023__SRR20811293__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811293__bin.7 85.48 0.49 179 2237031 34.83 20169 SAMN30028981 SRR20811293 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. DeFilippisF_xxxx__DF_100__bin.17 DeFilippisF_xxxx__DF_100__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Marinilactibacillus Marinilactibacillus psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FalardeauJ_2023__SRR20811293__bin.9 77.66 0.61 38 1776130 34.95 91370 SAMN30028981 SRR20811293 Canada PRJNA863305 SRP389750 NCBI Falardeau J, Yildiz E, Yan Y, Castellarin SD, Wang S. Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses. Appl Environ Microbiol. 2023 Apr 26;89(4):e0200422. doi: 10.1128/aem.02004-22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746818__bin.1 57.38 0.23 36 1264159 35.87 57770 SAMN30094253 SRR20746818 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 FontanaF_2023__SRR20746818__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746818__bin.2 99.99 0.71 108 1758528 37.85 35029 SAMN30094253 SRR20746818 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746818__bin.3 50.58 0.02 34 1225984 35.27 63019 SAMN30094253 SRR20746818 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746819__bin.1 84.19 1.09 315 1890276 35 8355 SAMN30094252 SRR20746819 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 MAG_411 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746819__bin.2 97.89 0.34 110 2399089 35.3 55828 SAMN30094252 SRR20746819 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746820__bin.2 97.45 1.22 167 1683109 36.58 15590 SAMN30094251 SRR20746820 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746820__bin.3 79.47 0.11 97 1391516 50.43 18908 SAMN30094251 SRR20746820 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_73__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746820__bin.4 52.65 0.27 43 934774 39.54 24017 SAMN30094251 SRR20746820 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746820__bin.6 99 0.55 112 2646360 47 39476 SAMN30094251 SRR20746820 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_337__bin.6 FontanaF_2023__SRR20746820__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746821__bin.1 83.28 0.33 59 1499478 39.37 38873 SAMN30094250 SRR20746821 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746821__bin.3 52.07 2.27 87 983704 36.9 16951 SAMN30094250 SRR20746821 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746821__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746822__bin.2 93.13 0.28 206 2557807 46.76 18326 SAMN30094249 SRR20746822 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746833__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746822__bin.3 74.43 1.88 626 3183001 52.09 6498 SAMN30094249 SRR20746822 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. LeechJ_2020__ERS3967688__bin.2 FontanaF_2023__SRR20746822__bin.3 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746822__bin.6 99.94 0.34 115 1651406 39.31 24621 SAMN30094249 SRR20746822 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746822__bin.7 91.93 0.63 86 1528275 50.64 27571 SAMN30094249 SRR20746822 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746822__bin.9 75.4 1.92 343 1265652 37.67 4109 SAMN30094249 SRR20746822 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746822__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746823__bin.1 85.03 0.06 88 1494868 50.84 21068 SAMN30094248 SRR20746823 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_73__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746823__bin.3 91.79 0.95 121 2606919 53.79 32850 SAMN30094248 SRR20746823 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_008694105.1_ASM869410v1_genomic DeFilippisF_xxxx__DF_33__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746823__bin.4 83.14 2.07 388 2410430 47.19 8083 SAMN30094248 SRR20746823 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_337__bin.6 FontanaF_2023__SRR20746823__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746824__bin.1 52.77 0.07 51 959541 54.6 26204 SAMN30094247 SRR20746824 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746839__bin.4 FontanaF_2023__SRR20746824__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746824__bin.2 99.5 0.3 45 2270943 35.03 75691 SAMN30094247 SRR20746824 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746824__bin.3 83.65 0.63 72 1463723 50.96 29588 SAMN30094247 SRR20746824 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746824__bin.6 99.99 0.17 83 1874489 38.27 35437 SAMN30094247 SRR20746824 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_418__bin.8 FontanaF_2023__SRR20746824__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus petauri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746824__bin.9 75.89 1.39 123 1308515 36.5 15131 SAMN30094247 SRR20746824 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746825__bin.1 96.98 0.48 108 2693372 46.95 59831 SAMN30094246 SRR20746825 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746825__bin.2 81.73 0.24 66 1352407 50.67 35275 SAMN30094246 SRR20746825 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746826__bin.2 70.21 0.01 129 1080518 51.77 10175 SAMN30094245 SRR20746826 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746827__bin.1 82.54 0.14 72 2305344 46.68 48390 SAMN30094244 SRR20746827 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746827__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746827__bin.2 87.83 0.06 75 2730606 46.77 50465 SAMN30094244 SRR20746827 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746827__bin.3 78.74 0.3 81 1431194 53.25 28905 SAMN30094244 SRR20746827 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746839__bin.4 MASTER_WP4_UNINA_1__PA207_73417__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746827__bin.4 60.39 0.03 149 1143003 36.14 10682 SAMN30094244 SRR20746827 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746827__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746827__bin.7 81.96 1.72 178 1330965 51.37 10643 SAMN30094244 SRR20746827 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746829__bin.2 94.33 0.02 62 2395944 46.73 74985 SAMN30094243 SRR20746829 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746829__bin.3 55.38 0.21 53 1085048 38.4 42541 SAMN30094243 SRR20746829 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 FontanaF_2023__SRR20746838__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746829__bin.4 95.93 0.37 233 1796843 36.93 12246 SAMN30094243 SRR20746829 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746829__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746829__bin.6 94.96 1.09 360 2302155 43.91 8393 SAMN30094243 SRR20746829 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746830__bin.1 93.12 0.5 78 1576681 50.79 33552 SAMN30094242 SRR20746830 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic MAG_503 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746830__bin.4 58.52 0.04 69 1185523 39.05 38625 SAMN30094242 SRR20746830 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746831__bin.1 75.45 0.45 306 1312435 42.77 4914 SAMN30094241 SRR20746831 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 FontanaF_2023__SRR20746831__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746831__bin.2 86.14 0.42 398 2470254 37.95 9021 SAMN30094241 SRR20746831 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MASTER_WP4_CSIC_1__P2235_73323__bin.9 FontanaF_2023__SRR20746831__bin.2 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746831__bin.3 97.58 0.88 139 2911280 37.88 39283 SAMN30094241 SRR20746831 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746834__bin.2 FontanaF_2023__SRR20746834__bin.2 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B durans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746831__bin.4 99.9 1.35 62 1714958 39.2 57224 SAMN30094241 SRR20746831 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746831__bin.5 85.6 0.06 45 1425306 43.75 40187 SAMN30094241 SRR20746831 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. ODFM-BA-A-0094-002_Leuconostoc_lactis_WIKIM21 MASTER_WP4_CSIC_2__P2559__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746831__bin.6 93.59 1.46 260 2146230 38.66 11740 SAMN30094241 SRR20746831 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MASTER_WP4_TEAGASC_1__TGS12-29__bin.6 MASTER_WP4_UNINA_1__FO013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B faecium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746832__bin.1 81.03 2.95 102 2154051 44.04 32313 SAMN30094240 SRR20746832 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746832__bin.10 92.54 1.21 234 2538194 53.9 18493 SAMN30094240 SRR20746832 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_008694105.1_ASM869410v1_genomic DeFilippisF_xxxx__DF_33__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746832__bin.11 93.57 1.13 99 1793267 50.61 27686 SAMN30094240 SRR20746832 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746832__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746832__bin.12 80.88 0.42 253 2365928 46.82 13784 SAMN30094240 SRR20746832 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746832__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746832__bin.3 95.79 0.26 103 1854242 63.97 32067 SAMN30094240 SRR20746832 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_296__bin.3 CM_UNINA_FFOOD__FFOOD_296__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746832__bin.7 83.69 0.59 167 2551065 45.34 21425 SAMN30094240 SRR20746832 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746833__bin.1 99.68 0.01 91 2566632 46.7 48031 SAMN30094239 SRR20746833 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746833__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746833__bin.3 96.89 0.16 110 1674908 39.24 23043 SAMN30094239 SRR20746833 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746834__bin.1 92.13 0.88 264 2550630 46.91 13736 SAMN30094238 SRR20746834 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746866__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746834__bin.10 59.09 3.4 647 1718997 43.11 2722 SAMN30094238 SRR20746834 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MASTER_WP4_UNINA_1__GO004_71775__bin.8 FontanaF_2023__SRR20746834__bin.10 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_A Enterococcus A gilvus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746834__bin.11 99.23 2.53 376 1817759 37.47 6921 SAMN30094238 SRR20746834 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. KharnaiorP_2023__SRR22859379__bin.8 DeFilippisF_xxxx__DF_30__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746834__bin.12 97.47 0.14 62 1675416 39.14 41113 SAMN30094238 SRR20746834 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746834__bin.2 99.89 0.4 332 2780206 38.3 13318 SAMN30094238 SRR20746834 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746834__bin.2 FontanaF_2023__SRR20746834__bin.2 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B durans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746834__bin.5 90.85 4.47 458 2432057 54.03 6609 SAMN30094238 SRR20746834 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_008694105.1_ASM869410v1_genomic FontanaF_2023__SRR20746834__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746834__bin.7 62.23 0.56 349 1080713 51.55 3341 SAMN30094238 SRR20746834 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746832__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746834__bin.8 89.94 0.01 64 1729626 64.04 43236 SAMN30094238 SRR20746834 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_296__bin.3 CM_UNINA_FFOOD__FFOOD_296__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746834__bin.9 92.06 1.2 323 2211650 58.05 9822 SAMN30094238 SRR20746834 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_290__bin.1 FontanaF_2023__SRR20746834__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia crudilactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746835__bin.1 83.77 0.38 106 1492805 50.75 20199 SAMN30094320 SRR20746835 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_73__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746835__bin.2 99.43 0.19 97 1733803 39.04 28347 SAMN30094320 SRR20746835 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746835__bin.3 98.93 1.21 158 1674023 36.75 16214 SAMN30094320 SRR20746835 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746836__bin.1 99.68 0 177 2395675 46.78 24143 SAMN30094319 SRR20746836 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746836__bin.3 93.82 0.8 91 1628073 39.11 32652 SAMN30094319 SRR20746836 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746837__bin.2 93.96 0.92 103 1594571 39.24 21460 SAMN30094318 SRR20746837 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746837__bin.3 92.17 0.03 128 1548794 36.64 19949 SAMN30094318 SRR20746837 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746838__bin.1 84.52 0.24 171 2345086 46.75 21211 SAMN30094317 SRR20746838 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746838__bin.10 88.58 2.43 85 1736562 40.17 32157 SAMN30094317 SRR20746838 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_270__bin.3 MASTER_WP4_UNINA_1__PM012_71775__bin.16 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus suis AA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746838__bin.11 91.82 0.24 71 1825567 38.67 43438 SAMN30094317 SRR20746838 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746838__bin.11 FontanaF_2023__SRR20746838__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus garvieae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746838__bin.3 99.85 1.92 71 1784220 38.94 40941 SAMN30094317 SRR20746838 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 FontanaF_2023__SRR20746838__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746838__bin.4 84.71 1.34 42 1493311 43.72 61025 SAMN30094317 SRR20746838 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746838__bin.5 72.5 0.22 296 1247248 51.52 5037 SAMN30094317 SRR20746838 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746838__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746839__bin.2 81.71 1.93 218 1942140 37.56 12179 SAMN30094316 SRR20746839 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. DeFilippisF_xxxx__DF_104__bin.4 FontanaF_2023__SRR20746839__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus macedonicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746839__bin.3 77.47 1.72 437 1990515 47.1 5307 SAMN30094316 SRR20746839 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746839__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746839__bin.4 99.89 0.03 58 1690368 53.22 43515 SAMN30094316 SRR20746839 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746839__bin.4 FontanaF_2023__SRR20746839__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746839__bin.5 92.34 0.27 49 1704052 50.62 61023 SAMN30094316 SRR20746839 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746839__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746839__bin.7 91.44 4.53 455 2266797 35.33 6461 SAMN30094316 SRR20746839 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 FontanaF_2023__SRR20746839__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746839__bin.8 91.17 0.72 88 1828306 39.01 38016 SAMN30094316 SRR20746839 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 MAG_169 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746840__bin.1 63.11 0.1 24 1058015 39.35 70586 SAMN30094315 SRR20746840 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746840__bin.2 76.09 0.11 98 1334291 50.26 16830 SAMN30094315 SRR20746840 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__M-28__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746840__bin.3 84.92 0.5 85 1446269 43.76 26342 SAMN30094315 SRR20746840 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746840__bin.4 85.54 0.02 135 1458580 37.04 16140 SAMN30094315 SRR20746840 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746840__bin.6 90.19 0.11 121 2718526 46.9 35176 SAMN30094315 SRR20746840 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_337__bin.6 MASTER_WP4_UNINA_1__CS007_71775__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746840__bin.7 72.27 0.12 99 1650128 46.79 24525 SAMN30094315 SRR20746840 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 AlvarezOrdonezA_xxxx__Q02-30__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746841__bin.2 78.98 0.1 90 1454747 50.36 27374 SAMN30094314 SRR20746841 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746841__bin.3 95 3.06 430 2014179 36.95 5894 SAMN30094314 SRR20746841 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 WalshAM_2020__ERS3466725__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746841__bin.4 99.98 0.26 174 2446813 67.44 19543 SAMN30094314 SRR20746841 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746841__bin.7 99.99 4.56 76 2464964 43.81 64836 SAMN30094314 SRR20746841 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746841__bin.9 96.86 2.5 127 3010289 46.58 42315 SAMN30094314 SRR20746841 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_337__bin.6 DeFilippisF_xxxx__DF_96__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746843__bin.10 84.1 0 99 2159335 46.73 35483 SAMN30094313 SRR20746843 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746843__bin.11 97.23 1.71 116 1891351 37.45 29875 SAMN30094313 SRR20746843 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. DeFilippisF_xxxx__DF_104__bin.4 DeFilippisF_xxxx__DF_104__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus macedonicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746843__bin.2 84.69 2.56 352 2066485 44.01 6891 SAMN30094313 SRR20746843 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746843__bin.3 74.18 0.34 59 1226040 39.81 36020 SAMN30094313 SRR20746843 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746843__bin.5 94.28 0.6 136 2184878 44.6 26474 SAMN30094313 SRR20746843 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746843__bin.7 83.31 0.06 77 1461390 50.65 25869 SAMN30094313 SRR20746843 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746843__bin.9 92.75 0.23 33 1527866 43.75 72786 SAMN30094313 SRR20746843 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746844__bin.1 81.99 0.16 144 2021326 46.94 19308 SAMN30094312 SRR20746844 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746844__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746844__bin.2 55.6 0.15 50 979531 39.78 31494 SAMN30094312 SRR20746844 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746845__bin.1 86.87 0.22 181 2294193 46.82 20682 SAMN30094311 SRR20746845 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 AlvarezOrdonezA_xxxx__Q02-30__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746845__bin.2 89.36 4.27 393 1674491 38.23 5160 SAMN30094311 SRR20746845 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_009913915.1_ASM991391v1_genomic FontanaF_2023__SRR20746925__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746845__bin.3 99.85 0.3 184 2380701 42.69 21714 SAMN30094311 SRR20746845 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746845__bin.6 86.59 3.84 157 2124228 35.16 22770 SAMN30094311 SRR20746845 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746846__bin.1 57.98 0.18 28 1010513 39.47 95550 SAMN30094310 SRR20746846 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746846__bin.2 91.08 1.68 295 1459566 36.89 6422 SAMN30094310 SRR20746846 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746846__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746847__bin.1 89.2 0.21 194 2460902 46.82 16370 SAMN30094309 SRR20746847 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_2__P2635__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746847__bin.3 90.33 1.96 88 1623463 39.19 34526 SAMN30094309 SRR20746847 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746847__bin.4 99.97 1.31 180 1806107 37.98 15736 SAMN30094309 SRR20746847 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746847__bin.5 100 0.37 56 2300214 42.59 71281 SAMN30094309 SRR20746847 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746848__bin.3 99.21 0.14 156 2390652 46.79 25405 SAMN30094308 SRR20746848 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746848__bin.5 99.2 0.59 160 1840650 38.24 30283 SAMN30094308 SRR20746848 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746848__bin.6 94.25 0.14 80 1775385 63.99 35383 SAMN30094308 SRR20746848 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_296__bin.3 CM_UNINA_FFOOD__FFOOD_296__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746848__bin.8 82.65 2.89 289 1999586 42.07 8690 SAMN30094308 SRR20746848 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746849__bin.2 76.54 0.42 90 1387721 50.47 22553 SAMN30094307 SRR20746849 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_73__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746849__bin.3 99.78 1.07 86 1649637 39.17 30359 SAMN30094307 SRR20746849 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746849__bin.5 93.48 1.81 192 1853099 36.28 15058 SAMN30094307 SRR20746849 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746850__bin.2 99.66 0.14 95 1680202 39.12 32396 SAMN30094306 SRR20746850 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746851__bin.3 99.98 1 164 2292221 44.47 19898 SAMN30094305 SRR20746851 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746851__bin.4 91.28 0.14 117 1521268 51 17497 SAMN30094305 SRR20746851 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_62__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746851__bin.5 98.18 2.68 113 1686012 39.2 22576 SAMN30094305 SRR20746851 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746851__bin.6 96.04 0.33 304 5198003 56.68 24400 SAMN30094305 SRR20746851 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746851__bin.6 FontanaF_2023__SRR20746851__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella grimontii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746852__bin.2 87.6 0.21 61 1531785 39.31 45316 SAMN30094304 SRR20746852 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746852__bin.3 92.36 0.32 157 2435961 46.81 25013 SAMN30094304 SRR20746852 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746852__bin.4 81.1 2.63 609 2637107 46.64 4918 SAMN30094304 SRR20746852 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_337__bin.6 FontanaF_2023__SRR20746852__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746852__bin.5 82.58 3.99 477 1638069 36.96 3911 SAMN30094304 SRR20746852 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746852__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746852__bin.6 99.97 1.61 121 2457933 43.85 44948 SAMN30094304 SRR20746852 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746852__bin.9 79.63 0.18 301 1343311 51.18 5234 SAMN30094304 SRR20746852 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746852__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746854__bin.2 100 0.01 195 4467049 55.58 36954 SAMN30094303 SRR20746854 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746854__bin.2 FontanaF_2023__SRR20746854__bin.2 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter Enterobacter intestinihominis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746854__bin.4 86.95 2.95 102 1743157 37.69 32346 SAMN30094303 SRR20746854 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. DeFilippisF_xxxx__DF_104__bin.4 DeFilippisF_xxxx__DF_104__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus macedonicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746854__bin.7 99.13 0.56 54 1946256 38.48 54562 SAMN30094303 SRR20746854 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. LeechJ_2020__ERS3967740__bin.10 LeechJ_2020__ERS3967740__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus parvulus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746854__bin.9 81.69 0 80 2171783 46.73 40381 SAMN30094303 SRR20746854 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746855__bin.1 99.37 0.01 88 2312894 46.8 36311 SAMN30094302 SRR20746855 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746855__bin.10 91.33 0.77 162 1583067 51.03 17661 SAMN30094302 SRR20746855 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__O-25.1__bin.29 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746855__bin.11 99.92 3.64 234 2342034 35.36 17970 SAMN30094302 SRR20746855 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 FontanaF_2023__SRR20746855__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746855__bin.2 88.16 4.52 213 1692748 39.41 12891 SAMN30094302 SRR20746855 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 FontanaF_2023__SRR20746855__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746855__bin.5 88.16 4.07 147 1749998 37.63 19969 SAMN30094302 SRR20746855 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. DeFilippisF_xxxx__DF_104__bin.4 DeFilippisF_xxxx__DF_104__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus macedonicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746855__bin.7 88.09 1.74 228 1761449 37.8 11590 SAMN30094302 SRR20746855 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. WalshAM_2017__ERS1739834__bin.1 FontanaF_2023__SRR20746855__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746856__bin.1 99.9 0.1 125 2124263 35.21 30171 SAMN30094301 SRR20746856 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 FontanaF_2023__SRR20746856__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746856__bin.2 99.98 1.9 202 3150354 40.11 25718 SAMN30094301 SRR20746856 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 FontanaF_2023__SRR20746856__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746856__bin.4 53.04 0.57 424 1374304 42.26 3380 SAMN30094301 SRR20746856 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. SalgadoTS_2021__SRR13801804__bin.3 FontanaF_2023__SRR20746856__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746857__bin.1 87.84 0.36 215 2419768 46.8 18271 SAMN30094300 SRR20746857 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_2__P2635__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746857__bin.2 99.89 2.3 161 2175044 35.28 23655 SAMN30094300 SRR20746857 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 FontanaF_2023__SRR20746856__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746857__bin.3 92.42 0.09 119 1598234 39.34 20156 SAMN30094300 SRR20746857 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746858__bin.2 95.41 0.69 93 2106825 35.05 36237 SAMN30094299 SRR20746858 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 FontanaF_2023__SRR20746856__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746858__bin.4 87.17 0 140 2271098 46.75 24308 SAMN30094299 SRR20746858 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 AlvarezOrdonezA_xxxx__Q02-30__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746859__bin.1 53.24 0.03 39 915119 50.42 31917 SAMN30094298 SRR20746859 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746859__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746859__bin.3 83.68 0.41 66 1446573 39.55 44066 SAMN30094298 SRR20746859 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746860__bin.1 81.82 0.51 103 1342001 51.34 22802 SAMN30094297 SRR20746860 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_62__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746860__bin.2 92.25 2.5 242 1660276 36.72 9248 SAMN30094297 SRR20746860 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746860__bin.3 99.82 0.33 61 1712615 39.09 51029 SAMN30094297 SRR20746860 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746861__bin.10 50.97 0.11 107 2821575 60.32 44553 SAMN30094296 SRR20746861 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746861__bin.10 FontanaF_2023__SRR20746861__bin.10 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E brenneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746861__bin.12 65.62 4.79 151 1799158 34.58 19629 SAMN30094296 SRR20746861 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 FontanaF_2023__SRR20746861__bin.12 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746863__bin.1 93.79 3.14 135 2539901 45.91 38039 SAMN30094294 SRR20746863 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. DeFilippisF_xxxx__DF_96__bin.15 DeFilippisF_xxxx__DF_96__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parafarraginis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746863__bin.2 98.8 1.02 231 1639702 42.77 10698 SAMN30094294 SRR20746863 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_425__bin.9 MASTER_WP4_UNINA_1__PA011_73417__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746863__bin.3 94.54 0.99 98 1641024 39.23 28410 SAMN30094294 SRR20746863 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746863__bin.4 86 1.08 148 2190992 46.89 23959 SAMN30094294 SRR20746863 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746865__bin.2 96.97 0.49 110 1581671 50.82 27509 SAMN30094293 SRR20746865 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_62__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746866__bin.1 93.16 3.52 334 3064438 45.05 13479 SAMN30094292 SRR20746866 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FalardeauJ_2023__SRR20811279__bin.3 FontanaF_2023__SRR20746964__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746866__bin.4 79.16 3.2 501 2068572 46.08 4752 SAMN30094292 SRR20746866 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MotaGutierrezJ_2021__SRR11602150__bin.9 FontanaF_2023__SRR20746866__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746866__bin.5 100 0.33 104 2367992 35.15 48074 SAMN30094292 SRR20746866 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 FontanaF_2023__SRR20746866__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746866__bin.6 100 0.15 91 2039402 40.48 37052 SAMN30094292 SRR20746866 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746866__bin.6 FontanaF_2023__SRR20746866__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746866__bin.8 100 3.31 91 2015765 37.59 50956 SAMN30094292 SRR20746866 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746866__bin.9 99.76 0.42 243 2533159 46.89 14040 SAMN30094292 SRR20746866 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746866__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746867__bin.10 97.82 1.02 231 2486462 36.93 17573 SAMN30094291 SRR20746867 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. DeFilippisF_xxxx__DS_2__bin.27 FontanaF_2023__SRR20746867__bin.10 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus koreensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746867__bin.12 89.9 0.22 244 2485715 46.87 15805 SAMN30094291 SRR20746867 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746929__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746867__bin.15 95.49 0.04 68 1812388 64.12 48547 SAMN30094291 SRR20746867 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_296__bin.3 CM_UNINA_FFOOD__FFOOD_296__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746867__bin.2 93.99 0.32 72 1676340 50.42 33003 SAMN30094291 SRR20746867 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_62__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746867__bin.3 68.9 0.95 333 1254457 37.86 4085 SAMN30094291 SRR20746867 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746867__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746867__bin.4 72.13 1.74 462 1704069 58.14 4175 SAMN30094291 SRR20746867 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_290__bin.1 FontanaF_2023__SRR20746867__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia crudilactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746868__bin.15 99.26 0.48 43 1592463 54.04 58103 SAMN30094290 SRR20746868 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_009428965.1_ASM942896v1_genomic GCF_009428965.1_ASM942896v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus pontis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746868__bin.5 89.86 0.16 84 1603949 53.4 32267 SAMN30094290 SRR20746868 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746839__bin.4 FontanaF_2023__SRR20746839__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746868__bin.6 99.67 1.05 326 2338048 67.6 11132 SAMN30094290 SRR20746868 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746868__bin.9 84.36 1.08 135 1424611 51.2 16710 SAMN30094290 SRR20746868 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746869__bin.1 69.12 1.15 872 3027752 56.53 3757 SAMN30094289 SRR20746869 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746869__bin.1 FontanaF_2023__SRR20746869__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter Enterobacter asburiae B cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746869__bin.10 91.23 2.73 109 1682851 39.46 23129 SAMN30094289 SRR20746869 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746869__bin.11 99.04 1.55 132 2186483 35.46 39095 SAMN30094289 SRR20746869 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 MASTER_WP4_UNINA_2__O-26.1__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746869__bin.12 94.97 1.08 168 2196810 41.97 19859 SAMN30094289 SRR20746869 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746869__bin.13 80.85 2.95 470 1748333 37.14 4428 SAMN30094289 SRR20746869 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746869__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746869__bin.4 76.44 4.05 290 1422700 51.25 5716 SAMN30094289 SRR20746869 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746869__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746869__bin.5 99.91 0.35 73 1975681 39.95 45139 SAMN30094289 SRR20746869 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_001885995.1_ASM188599v1_genomic FontanaF_2023__SRR20746869__bin.5 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_G Enterococcus G italicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746869__bin.6 96.13 1.33 108 1935171 39.84 31813 SAMN30094289 SRR20746869 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_270__bin.3 FontanaF_2023__SRR20746869__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus suis AA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746869__bin.7 79.06 4.13 492 1995191 57.96 4606 SAMN30094289 SRR20746869 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_290__bin.1 FontanaF_2023__SRR20746869__bin.7 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia crudilactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746869__bin.8 55.18 0.16 54 1007690 38.79 33610 SAMN30094289 SRR20746869 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746870__bin.2 63.38 0.28 310 1023942 51.57 3461 SAMN30094288 SRR20746870 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746870__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746870__bin.5 83.68 2.74 412 1884575 58.02 5574 SAMN30094288 SRR20746870 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_290__bin.1 FontanaF_2023__SRR20746870__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia crudilactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746870__bin.6 98.16 0.52 48 1918964 63.59 70344 SAMN30094288 SRR20746870 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_296__bin.3 CM_UNINA_FFOOD__FFOOD_296__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746870__bin.7 75.93 2.1 574 1807802 36.25 3372 SAMN30094288 SRR20746870 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 FontanaF_2023__SRR20746870__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746870__bin.8 99.34 0.03 86 1659880 39.29 37599 SAMN30094288 SRR20746870 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746870__bin.9 93.85 2.32 258 2500496 46.9 13795 SAMN30094288 SRR20746870 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746871__bin.1 87.77 0.44 224 2490082 46.79 16327 SAMN30094204 SRR20746871 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_357__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746871__bin.2 99.99 2.68 172 2425168 67.42 34028 SAMN30094204 SRR20746871 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746871__bin.3 95.79 1.98 147 2408875 43.81 28868 SAMN30094204 SRR20746871 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746871__bin.4 99.95 0.1 71 1739851 38.99 41475 SAMN30094204 SRR20746871 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746871__bin.5 99.84 0.69 53 1910753 41.13 64613 SAMN30094204 SRR20746871 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 FontanaF_2023__SRR20746871__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746873__bin.2 70.72 0.23 136 1393992 36.46 14738 SAMN30094203 SRR20746873 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746873__bin.3 96.28 0.3 46 2347902 67.51 86277 SAMN30094203 SRR20746873 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746873__bin.5 79.18 0.24 70 1346073 50.87 29859 SAMN30094203 SRR20746873 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746874__bin.1 93.86 0.33 165 2735716 46.56 25434 SAMN30094202 SRR20746874 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746874__bin.3 81.46 0.18 234 1468993 37.07 8222 SAMN30094202 SRR20746874 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746874__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746874__bin.4 99.85 1.09 69 1631565 39.4 35109 SAMN30094202 SRR20746874 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746874__bin.5 90.63 1.1 349 2339004 46.31 9454 SAMN30094202 SRR20746874 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MotaGutierrezJ_2021__SRR11602150__bin.9 FontanaF_2023__SRR20746874__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746875__bin.1 93.74 1.56 84 1653801 50.62 29221 SAMN30094201 SRR20746875 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746875__bin.2 98.89 0.15 160 1694106 36.54 17200 SAMN30094201 SRR20746875 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746875__bin.3 99.98 0.96 47 1757635 38.93 65629 SAMN30094201 SRR20746875 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746875__bin.4 92.66 0.65 227 2760988 46.48 18844 SAMN30094201 SRR20746875 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746876__bin.1 87.17 0.02 91 2663394 46.5 50769 SAMN30094200 SRR20746876 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_357__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746876__bin.2 52.61 0.04 45 964930 40.18 31698 SAMN30094200 SRR20746876 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746877__bin.1 93.4 1.03 375 2852045 45.12 10299 SAMN30094199 SRR20746877 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746877__bin.2 59.15 1.68 544 1684606 46.88 3329 SAMN30094199 SRR20746877 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746877__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746877__bin.3 99.99 0.28 159 1977105 39.25 24319 SAMN30094199 SRR20746877 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746877__bin.4 99.99 0.52 158 2366530 35.14 27468 SAMN30094199 SRR20746877 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746878__bin.2 81.89 3.43 406 1897506 35.86 6130 SAMN30094198 SRR20746878 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 FontanaF_2023__SRR20746878__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746878__bin.4 90.36 0.26 192 2526828 46.73 24019 SAMN30094198 SRR20746878 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_357__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746879__bin.1 79.15 0.08 61 1290421 50.63 31925 SAMN30094197 SRR20746879 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746879__bin.2 75.07 0.21 209 1451189 36.76 8525 SAMN30094197 SRR20746879 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746879__bin.5 98.99 0.26 86 1678574 39.21 45932 SAMN30094197 SRR20746879 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746879__bin.6 65.65 1.43 294 1028100 44.27 3863 SAMN30094197 SRR20746879 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_245__bin.2 FontanaF_2023__SRR20746879__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746880__bin.1 93.27 0.41 123 2112550 34.89 24087 SAMN30094196 SRR20746880 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746880__bin.3 81.23 0.13 121 1796602 35.46 20666 SAMN30094196 SRR20746880 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746881__bin.1 84.88 0.62 98 1474691 50.91 25227 SAMN30094195 SRR20746881 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746881__bin.2 82.01 3.24 275 1890728 39.1 9673 SAMN30094195 SRR20746881 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. DeFilippisF_xxxx__DF_100__bin.11 FontanaF_2023__SRR20746881__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A carnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746881__bin.5 99.06 0.12 64 1604871 39.24 45663 SAMN30094195 SRR20746881 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746882__bin.1 95.7 0.43 32 2005824 40.09 99894 SAMN30094194 SRR20746882 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746866__bin.6 FontanaF_2023__SRR20746866__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746882__bin.3 77.13 1.57 847 3433811 55.77 4711 SAMN30094194 SRR20746882 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_289__bin.32 FontanaF_2023__SRR20746882__bin.3 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Lelliottia Lelliottia nimipressuralis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746884__bin.1 98.91 0.12 114 1626883 39.31 23180 SAMN30094193 SRR20746884 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746884__bin.2 99.3 0.71 103 1660786 50.32 26538 SAMN30094193 SRR20746884 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746884__bin.3 68.22 0.46 275 1066128 37.58 4643 SAMN30094193 SRR20746884 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746884__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746909__bin.1 83.52 0.45 153 2098605 46.27 21605 SAMN30094287 SRR20746909 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_CSIC_2__P2574__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746909__bin.10 95.68 1.56 198 2048585 44 15641 SAMN30094287 SRR20746909 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. LandisEA_2021__SRS5653155__bin.1 LandisEA_2021__SRS5653155__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746909__bin.11 76.82 2.41 375 2254553 45.08 7477 SAMN30094287 SRR20746909 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FalardeauJ_2023__SRR20811279__bin.3 FontanaF_2023__SRR20746909__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746909__bin.5 91.08 3.01 93 2318003 42.59 107201 SAMN30094287 SRR20746909 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746909__bin.6 89.08 1.57 213 2269089 46.96 16556 SAMN30094287 SRR20746909 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746909__bin.7 79.54 3.25 351 1833731 36 6874 SAMN30094287 SRR20746909 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 FontanaF_2023__SRR20746878__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746909__bin.9 88.74 2.22 120 2447690 46.11 32064 SAMN30094287 SRR20746909 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. DeFilippisF_xxxx__DF_96__bin.15 DeFilippisF_xxxx__DF_96__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parafarraginis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746910__bin.3 99.92 0.22 34 2439140 43.68 112679 SAMN30094286 SRR20746910 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. LandisEA_2021__SRS5653155__bin.1 LandisEA_2021__SRS5653155__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746910__bin.4 86.84 0.01 83 2134938 46.69 37091 SAMN30094286 SRR20746910 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 AlvarezOrdonezA_xxxx__Q02-30__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746910__bin.6 99.59 0.51 84 1592993 39.24 32662 SAMN30094286 SRR20746910 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746911__bin.1 98.4 0.89 253 1808389 36.99 10618 SAMN30094285 SRR20746911 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746911__bin.2 100 0.33 288 2355425 38.93 11173 SAMN30094285 SRR20746911 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. ODFM-BA-A-0139-001_Enterococcus_lactis_CICC_24101 MAG_125 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746911__bin.3 99.97 0.09 55 1729297 39 42456 SAMN30094285 SRR20746911 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746911__bin.5 100 0.44 32 3096106 44.67 156809 SAMN30094285 SRR20746911 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746912__bin.1 99.4 0.53 158 1797393 36.73 18773 SAMN30094284 SRR20746912 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746912__bin.2 96.52 1.41 96 1640283 39.2 29911 SAMN30094284 SRR20746912 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746914__bin.2 92.2 0.03 87 2423747 46.63 48946 SAMN30094283 SRR20746914 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746914__bin.5 99.65 0.11 97 1731005 38.97 38554 SAMN30094283 SRR20746914 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746915__bin.1 99.79 0.12 74 1732291 38.99 41475 SAMN30094282 SRR20746915 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746915__bin.10 87.77 0.11 491 2934349 42.32 8159 SAMN30094282 SRR20746915 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MASTER_WP4_FFoQSI_2__VB11-26__bin.7 FontanaF_2023__SRR20746915__bin.10 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter johnsonii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746915__bin.2 93.48 0.11 94 1598630 50.76 26612 SAMN30094282 SRR20746915 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746915__bin.3 99.06 0.01 138 2789246 46.42 31288 SAMN30094282 SRR20746915 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746915__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746915__bin.4 95.36 0.11 90 1818179 64.07 29086 SAMN30094282 SRR20746915 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_296__bin.3 CM_UNINA_FFOOD__FFOOD_296__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746915__bin.5 89.17 2.01 87 2380334 43.73 49277 SAMN30094282 SRR20746915 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746915__bin.6 99.97 0.2 181 2008059 36.53 22393 SAMN30094282 SRR20746915 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746915__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746915__bin.7 94.77 0.82 195 2424203 42.6 22098 SAMN30094282 SRR20746915 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746915__bin.8 100 1.5 264 2670254 38.32 16966 SAMN30094282 SRR20746915 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MASTER_WP4_TEAGASC_1__TGS12-29__bin.6 FontanaF_2023__SRR20746915__bin.8 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B faecium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746916__bin.1 95.57 0.21 65 1872812 64.03 46001 SAMN30094281 SRR20746916 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_296__bin.3 CM_UNINA_FFOOD__FFOOD_296__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746916__bin.2 92.72 0.35 181 1942680 36.56 19496 SAMN30094281 SRR20746916 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746915__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746916__bin.3 66.94 0.88 567 1973969 42.89 3928 SAMN30094281 SRR20746916 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_001434145.1_ASM143414v1_genomic FontanaF_2023__SRR20746916__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746916__bin.4 85.71 0.49 129 1526608 51.03 15419 SAMN30094281 SRR20746916 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_62__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746916__bin.5 95.95 0.15 78 2334943 43.85 49190 SAMN30094281 SRR20746916 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746916__bin.6 95.19 0.11 185 2607098 46.63 21682 SAMN30094281 SRR20746916 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746915__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746917__bin.1 83.68 0.5 230 2268683 46.94 13032 SAMN30094280 SRR20746917 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_337__bin.6 FontanaF_2023__SRR20746917__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746917__bin.2 84.96 1.66 82 2233471 46.72 44817 SAMN30094280 SRR20746917 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_325__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746917__bin.3 80.44 0.53 144 1437707 36.79 13002 SAMN30094280 SRR20746917 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746917__bin.5 79.04 0.79 70 1307576 50.94 23700 SAMN30094280 SRR20746917 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746918__bin.3 99.7 0.48 31 2882237 46.73 173815 SAMN30094279 SRR20746918 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746918__bin.4 83.05 0.4 179 1530108 39.42 12166 SAMN30094279 SRR20746918 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746918__bin.5 68.82 2.48 231 1033363 36.86 5227 SAMN30094279 SRR20746918 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746918__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746918__bin.6 94.04 0.56 87 1634949 50.55 26903 SAMN30094279 SRR20746918 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746918__bin.7 83.03 0.26 127 1463949 53.54 15671 SAMN30094279 SRR20746918 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746839__bin.4 MASTER_WP4_UNINA_1__PA207_73417__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746919__bin.1 81.7 0.22 81 1441595 53.11 29542 SAMN30094278 SRR20746919 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746839__bin.4 MASTER_WP4_UNINA_1__PA207_73417__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746919__bin.3 83.07 0.19 72 1445971 50.87 29624 SAMN30094278 SRR20746919 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746920__bin.2 77.15 0.04 60 2294079 46.78 58657 SAMN30094277 SRR20746920 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_337__bin.6 DeFilippisF_xxxx__DF_96__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746921__bin.1 85.41 1.42 80 1595900 50.57 29866 SAMN30094276 SRR20746921 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746921__bin.2 99.73 1.82 138 2472984 46.82 25285 SAMN30094276 SRR20746921 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746921__bin.3 86.55 0.12 227 2468451 48.36 14517 SAMN30094276 SRR20746921 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_421__bin.4 CM_UNINA_FFOOD__FFOOD_421__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus zeae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746922__bin.3 76.23 0.01 68 1248045 39.6 28663 SAMN30094275 SRR20746922 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746922__bin.4 95.52 0.48 56 1588585 50.66 56818 SAMN30094275 SRR20746922 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746922__bin.6 88.74 0.16 185 1763359 36.9 15749 SAMN30094275 SRR20746922 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746922__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746923__bin.1 99.19 0.1 103 1655250 39.16 27307 SAMN30094274 SRR20746923 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746923__bin.2 98.5 0.04 217 2521547 48.13 16473 SAMN30094274 SRR20746923 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_415__bin.4 CM_UNINA_FFOOD__FFOOD_415__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746925__bin.4 85.29 2.15 416 3552521 63.18 12262 SAMN30094273 SRR20746925 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. We6_bin.circ.9 KastmanEK_2016__CSB907__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746925__bin.5 99.95 0.05 57 1646605 37.95 63815 SAMN30094273 SRR20746925 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_009913915.1_ASM991391v1_genomic FontanaF_2023__SRR20746925__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746925__bin.6 54.08 0.57 380 1123185 36.68 3227 SAMN30094273 SRR20746925 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 FontanaF_2023__SRR20746925__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746925__bin.7 91.45 1.48 284 2536195 45.33 11936 SAMN30094273 SRR20746925 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FalardeauJ_2023__SRR20811279__bin.3 FontanaF_2023__SRR20746957__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746925__bin.9 97.7 1.15 62 1802032 38.9 40234 SAMN30094273 SRR20746925 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 FontanaF_2023__SRR20746925__bin.9 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746926__bin.1 100 0.49 240 2565527 35.02 20328 SAMN30094272 SRR20746926 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746926__bin.2 50.91 1.82 269 840285 52.04 3302 SAMN30094272 SRR20746926 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746926__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746926__bin.3 84.86 0.03 298 1359538 37.2 5644 SAMN30094272 SRR20746926 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746926__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746927__bin.1 95.96 0.32 338 2677069 69.04 11740 SAMN30094271 SRR20746927 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MASTER_WP4_CSIC_2__P2517__bin.17 FontanaF_2023__SRR20746927__bin.1 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Acidipropionibacterium Acidipropionibacterium jensenii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746927__bin.2 88.55 3 509 2881688 43.05 7388 SAMN30094271 SRR20746927 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FalardeauJ_2023__SRR20811274__bin.6 FontanaF_2023__SRR20746927__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861365 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746927__bin.3 92.92 0.14 80 1579630 39.17 30340 SAMN30094271 SRR20746927 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746927__bin.4 92.59 0 57 2653719 46.62 77215 SAMN30094271 SRR20746927 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746915__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746928__bin.2 99.54 1.07 98 1726147 38.99 30483 SAMN30094270 SRR20746928 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746928__bin.3 93.7 1.58 379 2009234 38.1 8065 SAMN30094270 SRR20746928 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746928__bin.4 99.4 0.69 233 2544319 46.85 17492 SAMN30094270 SRR20746928 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746866__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746928__bin.5 100 0.3 81 3144143 44.66 67036 SAMN30094270 SRR20746928 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746929__bin.1 93.12 0.2 70 1656777 50.53 37014 SAMN30094269 SRR20746929 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_62__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746929__bin.11 87.1 1.78 659 3475502 63.27 7060 SAMN30094269 SRR20746929 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. We6_bin.circ.9 FontanaF_2023__SRR20746929__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746929__bin.12 53.77 0.07 37 892505 39.71 38580 SAMN30094269 SRR20746929 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 MAG_392 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746929__bin.3 88.9 3.95 188 1737958 42.38 12598 SAMN30094269 SRR20746929 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746929__bin.4 83.82 3.93 269 2018074 43.39 9955 SAMN30094269 SRR20746929 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. LandisEA_2021__SRS5653333__bin.1 FontanaF_2023__SRR20746929__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746929__bin.6 77.04 3.06 421 1934041 44.3 5276 SAMN30094269 SRR20746929 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. LandisEA_2021__SRS5653155__bin.1 FontanaF_2023__SRR20746929__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746929__bin.8 95.05 0.21 254 2531133 46.75 15358 SAMN30094269 SRR20746929 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746929__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746929__bin.9 56.5 1.46 364 1135915 41.9 3379 SAMN30094269 SRR20746929 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 FontanaF_2023__SRR20746929__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746930__bin.12 53.38 0.11 39 1898385 53.41 88633 SAMN30094268 SRR20746930 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. We6_bin.full.31 DeFilippisF_xxxx__DF_85__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746930__bin.2 92.81 1.47 306 3574037 40.19 18444 SAMN30094268 SRR20746930 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FalardeauJ_2023__SRR20811282__bin.3 FontanaF_2023__SRR20746930__bin.2 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746930__bin.6 91.03 3.58 320 3248134 40.48 16862 SAMN30094268 SRR20746930 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MacoriG_2019__CS_R33__bin.1 FontanaF_2023__SRR20746930__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio hibernica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746930__bin.7 50.57 0.38 460 1817217 56.07 4395 SAMN30094268 SRR20746930 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. DeFilippisF_xxxx__DF_114__bin.22 FontanaF_2023__SRR20746930__bin.7 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746930__bin.9 91.16 0.12 130 1569774 39.6 19028 SAMN30094268 SRR20746930 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746931__bin.1 62.99 0.04 31 1042980 50.3 69342 SAMN30094267 SRR20746931 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic MAG_503 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746931__bin.3 99.6 0.56 125 1744681 39.02 22871 SAMN30094267 SRR20746931 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746932__bin.1 99.9 0.82 77 1660596 39.13 33884 SAMN30094266 SRR20746932 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746932__bin.2 92.94 0.63 54 1667629 50.3 53555 SAMN30094266 SRR20746932 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746933__bin.1 99.88 1.53 111 1700127 39.11 28842 SAMN30094265 SRR20746933 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746934__bin.2 100 0.45 61 2469228 67.44 72273 SAMN30094264 SRR20746934 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746934__bin.3 94.16 0.21 46 1823520 63.95 70544 SAMN30094264 SRR20746934 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_296__bin.3 CM_UNINA_FFOOD__FFOOD_296__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746934__bin.6 92.74 0.84 127 2572609 53.83 28896 SAMN30094264 SRR20746934 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_008694105.1_ASM869410v1_genomic FontanaF_2023__SRR20746934__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746936__bin.1 99.79 0.09 83 2300686 46.85 44438 SAMN30094263 SRR20746936 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746936__bin.2 100 3.06 62 2501576 34.87 123456 SAMN30094263 SRR20746936 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746936__bin.3 98.82 0.08 104 1737349 39.16 26821 SAMN30094263 SRR20746936 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746936__bin.4 78.68 1.2 364 1635079 39.76 5209 SAMN30094263 SRR20746936 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. WalshL_xxxx__V9__bin.2 FontanaF_2023__SRR20746936__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746936__bin.5 84.4 1.02 323 2241031 35.26 10055 SAMN30094263 SRR20746936 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746937__bin.1 100 0.04 27 1963304 37.67 167102 SAMN30094262 SRR20746937 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746937__bin.4 99.73 0 92 2319599 46.78 39870 SAMN30094262 SRR20746937 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746937__bin.5 86.75 0.33 45 1554114 50.3 56821 SAMN30094262 SRR20746937 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746937__bin.6 92 0.28 75 1592466 39.11 39959 SAMN30094262 SRR20746937 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746938__bin.1 84.36 3.02 372 1814197 36.57 6580 SAMN30094261 SRR20746938 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746938__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746938__bin.3 92.42 0.13 101 2400647 46.77 43582 SAMN30094261 SRR20746938 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746938__bin.4 59.17 0.15 56 1135881 38.11 30791 SAMN30094261 SRR20746938 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 MASTER_WP4_UNINA_1__PM002_71775__bin.12 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746938__bin.5 64.68 0.74 331 1126981 51.67 3742 SAMN30094261 SRR20746938 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746938__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746938__bin.7 86.71 1.41 373 2368906 43.85 8604 SAMN30094261 SRR20746938 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. LandisEA_2021__SRS5653155__bin.1 FontanaF_2023__SRR20746938__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746939__bin.1 99.96 1.49 203 2598656 34.9 25143 SAMN30094260 SRR20746939 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 FontanaF_2023__SRR20746939__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746939__bin.10 84.64 3.83 428 1939740 36.19 5606 SAMN30094260 SRR20746939 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_178 FontanaF_2023__SRR20746939__bin.10 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746939__bin.12 86.55 0.84 60 1551746 50.28 41002 SAMN30094260 SRR20746939 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746939__bin.13 50.56 0.34 22 976806 38.93 105762 SAMN30094260 SRR20746939 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 FontanaF_2023__SRR20746838__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746939__bin.14 86.81 2.85 326 2603358 45.07 12174 SAMN30094260 SRR20746939 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FalardeauJ_2023__SRR20811279__bin.3 FontanaF_2023__SRR20746957__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746939__bin.3 99.89 1.46 63 1975800 40.31 47818 SAMN30094260 SRR20746939 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746866__bin.6 FontanaF_2023__SRR20746866__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746939__bin.9 77.95 1.62 509 2270257 46.72 5501 SAMN30094260 SRR20746939 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746939__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746940__bin.2 97.41 0.13 69 1716492 39.26 47763 SAMN30094259 SRR20746940 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746940__bin.3 91.49 1.32 54 1690228 50.22 49981 SAMN30094259 SRR20746940 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746940__bin.4 67.49 0.19 29 1107218 39.35 75465 SAMN30094259 SRR20746940 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746940__bin.6 83.64 0.34 287 1541190 37.79 6682 SAMN30094259 SRR20746940 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746941__bin.1 58.76 2.25 113 970862 38.72 10306 SAMN30094258 SRR20746941 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MotaGutierrezJ_2021__SRR11602156__bin.13 FontanaF_2023__SRR20746941__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus amylovorus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746941__bin.2 65.62 0.08 66 1159657 39.6 26369 SAMN30094258 SRR20746941 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746941__bin.3 68.25 2.38 107 1271647 36.73 18042 SAMN30094258 SRR20746941 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746941__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746942__bin.1 70.59 0.25 442 1403300 36.28 3414 SAMN30094257 SRR20746942 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 FontanaF_2023__SRR20746942__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746942__bin.2 99.17 0.88 98 1643922 39.14 34908 SAMN30094257 SRR20746942 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746942__bin.3 91.95 0.15 168 1801261 36.34 15503 SAMN30094257 SRR20746942 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746942__bin.4 83.08 0.12 72 1528195 50.53 30377 SAMN30094257 SRR20746942 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic MAG_466 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746943__bin.1 99.6 0.03 73 1650368 39.11 41915 SAMN30094256 SRR20746943 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746943__bin.2 83.05 0.4 89 1466736 50.8 25174 SAMN30094256 SRR20746943 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_62__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746944__bin.1 79.49 4.19 167 1295892 51.21 9935 SAMN30094255 SRR20746944 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746944__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746944__bin.2 99.81 0.2 74 1731726 38.9 51682 SAMN30094255 SRR20746944 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746945__bin.1 95.54 0.97 253 1842893 36.77 10664 SAMN30094237 SRR20746945 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746945__bin.3 87.8 0.26 211 2390783 46.77 18106 SAMN30094237 SRR20746945 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746945__bin.4 68.5 0.08 52 1184056 39.72 32554 SAMN30094237 SRR20746945 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746945__bin.6 82.33 1.25 503 1888752 35.98 4374 SAMN30094237 SRR20746945 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 FontanaF_2023__SRR20746945__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746946__bin.5 80.72 0.58 31 1416204 50.33 84405 SAMN30094236 SRR20746946 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic MAG_503 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746946__bin.7 88.6 0.97 49 1617977 39.22 72201 SAMN30094236 SRR20746946 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746947__bin.1 96.38 0.08 160 1736568 36.63 18033 SAMN30094235 SRR20746947 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746947__bin.2 84.33 0.3 430 2186114 47.05 6257 SAMN30094235 SRR20746947 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746947__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746947__bin.3 92.3 0.5 46 1587358 50.59 69430 SAMN30094235 SRR20746947 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746947__bin.4 99.75 1.12 114 1750624 39.1 27478 SAMN30094235 SRR20746947 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746948__bin.1 99.84 0.27 60 1703861 39.11 43579 SAMN30094234 SRR20746948 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746948__bin.2 90.46 0.32 196 2358419 46.83 18396 SAMN30094234 SRR20746948 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746948__bin.3 93.29 1.41 389 2166635 35.93 7762 SAMN30094234 SRR20746948 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746950__bin.1 87.58 2.1 136 1529068 42.41 14164 SAMN30094233 SRR20746950 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746950__bin.2 80.38 2.28 118 1822273 35.14 22681 SAMN30094233 SRR20746950 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746951__bin.1 89.9 1.16 81 1527056 39.33 30755 SAMN30094232 SRR20746951 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746951__bin.2 66.62 1.9 325 1420469 36.21 4909 SAMN30094232 SRR20746951 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 AlvarezOrdonezA_xxxx__Q01-21__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746951__bin.3 99.43 3.63 167 2300775 34.99 21108 SAMN30094232 SRR20746951 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746951__bin.4 99.8 0.04 46 2813665 46.41 92812 SAMN30094232 SRR20746951 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746952__bin.2 78.8 1.59 236 1786174 35.39 11190 SAMN30094231 SRR20746952 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 FontanaF_2023__SRR20746952__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746952__bin.3 99.93 0.13 27 2832434 46.74 162592 SAMN30094231 SRR20746952 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_337__bin.6 MASTER_WP4_UNINA_1__PT008_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746952__bin.4 100 0.44 32 3064633 44.64 147462 SAMN30094231 SRR20746952 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746952__bin.5 70.77 1.03 435 1734664 47.07 4464 SAMN30094231 SRR20746952 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746952__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746953__bin.2 73.71 0.06 47 1279913 39.38 32009 SAMN30094230 SRR20746953 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746954__bin.3 95.69 4.79 120 3248423 42.95 58503 SAMN30094229 SRR20746954 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. 182 FontanaF_2023__SRR20746954__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746954__bin.4 63.6 0.02 414 1528898 37.79 4285 SAMN30094229 SRR20746954 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_001703515.1_ASM170351v1_genomic FontanaF_2023__SRR20746954__bin.4 Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746954__bin.5 62.39 0.42 496 1864447 44.55 4293 SAMN30094229 SRR20746954 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746954__bin.5 FontanaF_2023__SRR20746954__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter faecalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746954__bin.6 87.92 1.45 111 1448451 39.51 21577 SAMN30094229 SRR20746954 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746954__bin.7 98.68 0 54 2707363 46.58 78685 SAMN30094229 SRR20746954 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746915__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746955__bin.3 99.72 0.32 76 1677750 39.2 31277 SAMN30094228 SRR20746955 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746955__bin.4 84.23 0.05 43 2385948 46.62 80333 SAMN30094228 SRR20746955 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746915__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746955__bin.5 80.01 2.64 291 1392692 51.2 6381 SAMN30094228 SRR20746955 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_1__FO007_71775__bin.19 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746956__bin.1 85.05 0.14 119 1624733 39.33 22755 SAMN30094227 SRR20746956 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 MAG_169 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746956__bin.3 96.69 2.28 361 2636867 46.64 10720 SAMN30094227 SRR20746956 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746962__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746957__bin.2 59.3 0.05 41 1043853 39.86 38354 SAMN30094226 SRR20746957 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 MAG_169 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746957__bin.3 65.54 0.03 404 1322512 39.84 3666 SAMN30094226 SRR20746957 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. C-R03.bin.7 FontanaF_2023__SRR20746957__bin.3 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Bavariicoccus Bavariicoccus seileri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746957__bin.5 99.31 0.27 80 2745629 46.49 70708 SAMN30094226 SRR20746957 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746915__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746957__bin.6 93.41 0.42 82 1678692 50.34 28278 SAMN30094226 SRR20746957 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_1__FO007_71775__bin.19 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746957__bin.7 99.97 0.21 330 2825143 45.24 12522 SAMN30094226 SRR20746957 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FalardeauJ_2023__SRR20811279__bin.3 FontanaF_2023__SRR20746957__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746958__bin.1 99.49 2.42 328 2535292 43.8 10943 SAMN30094225 SRR20746958 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746958__bin.3 92.51 0.41 120 2749710 46.7 36999 SAMN30094225 SRR20746958 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_337__bin.6 DeFilippisF_xxxx__DF_96__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746958__bin.4 94.74 3.29 190 1872771 39.31 15961 SAMN30094225 SRR20746958 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 MAG_169 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746958__bin.5 91.41 0.15 231 2512383 46.64 16150 SAMN30094225 SRR20746958 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746833__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746958__bin.6 64.66 0.72 331 1078955 38.92 3532 SAMN30094225 SRR20746958 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. WalshAM_2017__ERS1739834__bin.1 FontanaF_2023__SRR20746958__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746958__bin.7 64.57 3.23 474 1351725 36.8 2971 SAMN30094225 SRR20746958 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 FontanaF_2023__SRR20746958__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746958__bin.8 91.59 0.13 105 1566905 50.86 25567 SAMN30094225 SRR20746958 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_1__FO007_71775__bin.19 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746959__bin.1 89.51 0.64 217 2536375 46.71 17366 SAMN30094224 SRR20746959 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746959__bin.5 94.27 4.42 328 2572513 43.39 11945 SAMN30094224 SRR20746959 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. LandisEA_2021__SRS5653333__bin.1 FontanaF_2023__SRR20746959__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746959__bin.6 100 1.8 62 2555812 34.9 88113 SAMN30094224 SRR20746959 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746959__bin.7 98.47 0.17 181 2124523 46.48 18976 SAMN30094224 SRR20746959 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746961__bin.2 99.94 1.63 243 2516468 35.03 17366 SAMN30094223 SRR20746961 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 FontanaF_2023__SRR20746856__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746961__bin.4 99.46 1.72 86 1661813 39.21 30218 SAMN30094223 SRR20746961 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746961__bin.5 99.98 0.48 253 2923016 45.01 15765 SAMN30094223 SRR20746961 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746962__bin.1 98.93 0.24 84 1569774 39.23 30354 SAMN30094222 SRR20746962 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746962__bin.2 78.91 0.23 282 2164475 47.31 9330 SAMN30094222 SRR20746962 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746962__bin.3 92.87 0.13 152 2516840 46.71 21972 SAMN30094222 SRR20746962 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746962__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746962__bin.4 71.65 0.8 382 1539202 36.29 4574 SAMN30094222 SRR20746962 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746962__bin.5 96.97 3.3 231 2406386 35.03 15854 SAMN30094222 SRR20746962 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746963__bin.1 91.77 0.09 205 2397888 46.97 16650 SAMN30094221 SRR20746963 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746833__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746963__bin.3 81.18 0.48 439 2452366 47.07 6801 SAMN30094221 SRR20746963 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_337__bin.6 DeFilippisF_xxxx__DF_96__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746963__bin.4 89.6 0.4 100 1577686 39.38 24675 SAMN30094221 SRR20746963 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746963__bin.6 99.98 1.24 74 2473797 43.75 90356 SAMN30094221 SRR20746963 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746963__bin.7 71.42 2.07 535 2001302 45.4 4261 SAMN30094221 SRR20746963 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FalardeauJ_2023__SRR20811279__bin.3 FontanaF_2023__SRR20746963__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746963__bin.8 83.26 0.29 64 1509891 50.21 31420 SAMN30094221 SRR20746963 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746964__bin.10 95.63 2.32 245 1724119 38.15 10432 SAMN30094220 SRR20746964 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_009913915.1_ASM991391v1_genomic FontanaF_2023__SRR20746925__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746964__bin.11 95.72 1.41 65 1685690 39.05 44556 SAMN30094220 SRR20746964 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746964__bin.13 85.59 0.07 377 1990581 39.22 6341 SAMN30094220 SRR20746964 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. ODFM-BA-A-0139-001_Enterococcus_lactis_CICC_24101 MAG_125 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746964__bin.2 98.54 0.5 124 2459434 46.74 29430 SAMN30094220 SRR20746964 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746964__bin.3 99.92 4.31 178 2895335 38.07 28269 SAMN30094220 SRR20746964 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746834__bin.2 FontanaF_2023__SRR20746834__bin.2 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B durans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746964__bin.4 96.06 0.53 90 1845489 64.01 32868 SAMN30094220 SRR20746964 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_296__bin.3 CM_UNINA_FFOOD__FFOOD_296__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746964__bin.5 94.2 0.39 155 2626983 45.1 24753 SAMN30094220 SRR20746964 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FalardeauJ_2023__SRR20811279__bin.3 FontanaF_2023__SRR20746964__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746964__bin.6 94.22 1.52 153 2362590 43.9 24052 SAMN30094220 SRR20746964 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746964__bin.7 99.19 0.08 209 2126260 46.49 14370 SAMN30094220 SRR20746964 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MotaGutierrezJ_2021__SRR11602150__bin.9 FontanaF_2023__SRR20746964__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746964__bin.8 99.43 0.94 228 1606979 37.59 9599 SAMN30094220 SRR20746964 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. KharnaiorP_2023__SRR22859379__bin.8 DeFilippisF_xxxx__DF_30__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746964__bin.9 79.69 4.62 503 1913912 36.5 4450 SAMN30094220 SRR20746964 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 FontanaF_2023__SRR20746964__bin.9 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746965__bin.1 87.27 0.01 86 2386983 46.82 48451 SAMN30094219 SRR20746965 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_2__P2635__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746965__bin.2 83.57 0.58 476 2189702 43.79 5613 SAMN30094219 SRR20746965 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. LandisEA_2021__SRS5653333__bin.1 FontanaF_2023__SRR20746965__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746965__bin.3 98.66 0.27 108 1645665 39.19 28860 SAMN30094219 SRR20746965 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746966__bin.1 100 1.04 136 2683679 35.09 49758 SAMN30094218 SRR20746966 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746966__bin.2 90.67 0.16 83 1548427 39.41 34091 SAMN30094218 SRR20746966 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746966__bin.3 86.83 0.04 68 2349623 46.65 62358 SAMN30094218 SRR20746966 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746966__bin.5 78.97 0.89 191 1340031 51.52 8306 SAMN30094218 SRR20746966 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746966__bin.6 80.53 2.45 274 1287070 38.49 5939 SAMN30094218 SRR20746966 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_009913915.1_ASM991391v1_genomic FontanaF_2023__SRR20746966__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746967__bin.1 95.74 0.21 77 1609277 39.23 35827 SAMN30094217 SRR20746967 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746967__bin.2 100 0.83 47 2510495 34.89 145157 SAMN30094217 SRR20746967 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746968__bin.10 58.19 1.35 494 1492405 54.15 3118 SAMN30094216 SRR20746968 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_008694105.1_ASM869410v1_genomic FontanaF_2023__SRR20746968__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746968__bin.11 86.85 1.62 233 2389329 46.84 15194 SAMN30094216 SRR20746968 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746866__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746968__bin.12 84.86 3.7 491 2644214 45.18 6802 SAMN30094216 SRR20746968 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_CSIC_1__P2249_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746968__bin.2 51.4 0.95 436 1171411 58.27 2781 SAMN30094216 SRR20746968 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_290__bin.1 FontanaF_2023__SRR20746968__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia crudilactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746968__bin.5 93.43 0.04 71 1897763 63.88 46061 SAMN30094216 SRR20746968 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_296__bin.3 CM_UNINA_FFOOD__FFOOD_296__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746968__bin.6 56.35 0.01 34 961389 39.58 44754 SAMN30094216 SRR20746968 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746968__bin.9 99.98 0.5 88 2308789 43.89 59447 SAMN30094216 SRR20746968 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746969__bin.1 99.97 0.51 221 1873297 39.23 13908 SAMN30094215 SRR20746969 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746969__bin.3 99.98 0.15 45 1737521 39.05 74002 SAMN30094215 SRR20746969 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746970__bin.1 92.52 0.38 96 1646778 39.09 30378 SAMN30094214 SRR20746970 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746970__bin.2 99.92 1.61 60 2296478 34.99 91816 SAMN30094214 SRR20746970 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746970__bin.3 93.26 0.08 209 1559118 38.08 11767 SAMN30094214 SRR20746970 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746970__bin.4 83.49 0.28 129 1378244 50.98 16938 SAMN30094214 SRR20746970 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746970__bin.5 99.03 1.08 50 1679667 39.33 49350 SAMN30094214 SRR20746970 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746972__bin.2 83.5 0.17 170 1496327 37.01 11887 SAMN30094213 SRR20746972 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746972__bin.3 95.35 0.11 180 1600529 39.59 14089 SAMN30094213 SRR20746972 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746972__bin.4 60.09 0.02 58 1011609 50.88 24897 SAMN30094213 SRR20746972 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746974__bin.3 69.57 2.67 327 3982354 56.6 18765 SAMN30094211 SRR20746974 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746974__bin.3 FontanaF_2023__SRR20746974__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E helleri A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746975__bin.2 96.69 0.2 161 2216398 35.3 23139 SAMN30094210 SRR20746975 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746975__bin.3 89.44 0.29 54 1739482 39.16 56774 SAMN30094210 SRR20746975 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746976__bin.1 51.02 0.86 719 1931720 55.67 2760 SAMN30094209 SRR20746976 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746854__bin.2 FontanaF_2023__SRR20746976__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter Enterobacter intestinihominis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746976__bin.4 70.52 4.14 492 2164572 35.96 5222 SAMN30094209 SRR20746976 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 FontanaF_2023__SRR20746976__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746977__bin.2 51.85 3.33 71 2862509 58.55 58018 SAMN30094208 SRR20746977 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_900618535.1_TH39_genomic FontanaF_2023__SRR20746977__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E bubulae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746977__bin.6 54.33 3.65 108 2959052 61.65 46753 SAMN30094208 SRR20746977 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MASTER_WP4_CSIC_1__P2184_73322__bin.5 FontanaF_2023__SRR20746977__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E sp012985465 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746978__bin.1 99.7 1.52 66 1573979 39.27 44251 SAMN30094207 SRR20746978 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746978__bin.2 55.4 0.28 167 1056089 36.48 9068 SAMN30094207 SRR20746978 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746978__bin.4 83.89 0.87 155 1491325 50.93 12600 SAMN30094207 SRR20746978 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746979__bin.1 96.78 0.24 57 1698995 39.06 49054 SAMN30094206 SRR20746979 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746979__bin.2 84.36 0.09 89 1503953 50.53 23455 SAMN30094206 SRR20746979 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746979__bin.3 99.85 0.07 165 1698826 36.76 15838 SAMN30094206 SRR20746979 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746980__bin.2 52.6 0.11 109 952342 35.95 11255 SAMN30094205 SRR20746980 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746980__bin.4 69.85 0.29 38 1744127 67.71 86277 SAMN30094205 SRR20746980 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746980__bin.6 59.91 0.29 44 1035904 40 32981 SAMN30094205 SRR20746980 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746981__bin.2 98.65 2.53 183 2335445 35.56 19085 SAMN30094254 SRR20746981 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 FontanaF_2023__SRR20746981__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746981__bin.3 87.44 1.08 243 1724061 39.44 10522 SAMN30094254 SRR20746981 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 FontanaF_2023__SRR20746981__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746981__bin.4 85.98 1.39 212 1947762 35.14 13444 SAMN30094254 SRR20746981 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months FontanaF_2023__SRR20746981__bin.5 95.38 0.07 80 1995753 40.42 45082 SAMN30094254 SRR20746981 Italy PRJNA865096 SRP389312 NCBI Fontana F, Longhi G, Alessandri G, Lugli GA, Mancabelli L, Tarracchini C, Viappiani A, Anzalone R, Ventura M, Turroni F, Milani C. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. mSystems. 2023 Feb 23;8(1):e0106822. doi: 10.1128/msystems.01068-22. FontanaF_2023__SRR20746866__bin.6 FontanaF_2023__SRR20746866__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB307__bin.3 99.44444444 1.823476703 105 2661760 32.94 45297 mgs409507 CSB307_GCCAAT.R France NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB307__bin.5 99.12280702 1.169590643 286 3832156 70.38 22500 mgs409507 CSB307_GCCAAT.R France NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB341__bin.4 91.66666667 0.740740741 87 2465003 33.02 51798 mgs409510 CSB341_CAGATC.R Spain NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB341__bin.11 68.81782946 1.744186047 161 1664342 62.26 13719 mgs409510 CSB341_CAGATC.R Spain NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. AlvarezOrdonezA_xxxx__Q03-30__bin.5 MASTER_WP4_CSIC_1__P2247_73323__bin.27 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB387__bin.5 98.88888889 0.555555556 97 2555428 32.98 73954 mgs409513 CSB387_ACTTGA.R United Kingdom NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB387__bin.4 92.71317829 0.406976744 348 3416985 63.3 14195 mgs409513 CSB387_ACTTGA.R United Kingdom NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. We6_bin.circ.9 KastmanEK_2016__CSB387__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB387__bin.6 58.18965517 0.431034483 16 2346399 54.59 243930 mgs409513 CSB387_ACTTGA.R United Kingdom NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. We6_bin.full.31 DeFilippisF_xxxx__DF_85__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB409__bin.2 66.2487781 1.666666667 625 1682609 33.48 2779 mgs409516 CSB409_GATCAG.R France NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. YangC_2021__SRR13259377__bin.4 KastmanEK_2016__CSB409__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB409__bin.4 80.5165692 1.754385965 898 2948038 70.41 3633 mgs409516 CSB409_GATCAG.R France NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. WolfeBE_2014__491_Bayley__bin.8 KastmanEK_2016__CSB409__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB409__bin.1 84.59302326 1.569767442 483 3189121 65.86 9027 mgs409516 CSB409_GATCAG.R France NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 KastmanEK_2016__CSB409__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB600__bin.4 95.60185185 2.083333333 358 2747717 33.09 10151 mgs409519 CSB600_TAGCTT.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. YangC_2021__SRR13259377__bin.4 KastmanEK_2016__CSB600__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB600__bin.3 99.41520468 1.949317739 224 3779745 70.41 36426 mgs409519 CSB600_TAGCTT.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB600__bin.10 85.90948091 1.396396396 638 2945486 65.92 5829 mgs409519 CSB600_TAGCTT.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. DeFilippisF_xxxx__DS_2__bin.17 WolfeBE_2014__575_CabotClothbound__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB600__bin.2 96.25 0.581395349 246 3946512 62.62 25431 mgs409519 CSB600_TAGCTT.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. WolfeBE_2014__575_CabotClothbound__bin.6 WolfeBE_2014__575_CabotClothbound__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB600__bin.6 85 0.4 3429 27640792 58.96 11413 mgs409519 CSB600_TAGCTT.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. KastmanEK_2016__CSB600__bin.6 KastmanEK_2016__CSB600__bin.6 Ascomycota;Sordariomycetes;Microascales;Microascaceae;unknown unknown cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB619__bin.3 99.44444444 0.694444444 87 2779838 32.77 67481 mgs409522 CSB619_GGCTAC.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB619__bin.7 95.2 0.2 872 32328409 48.49 77736 mgs409522 CSB619_GGCTAC.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. MASTER_WP4_UNINA_2__O-30__bin.13 MASTER_WP4_UNINA_2__O-30__bin.13 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium camemberti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB619__bin.2 97.6 0.1 152 11406117 36.28 184542 mgs409522 CSB619_GGCTAC.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB694__bin.5 98.75 2.222222222 260 2771422 32.86 17246 mgs409525 CSB694_CTTGTA.R France NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB694__bin.3 87.83366099 1.900393185 220 2375022 56.08 15317 mgs409525 CSB694_CTTGTA.R France NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 KastmanEK_2016__CSB694__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB694__bin.9 87.30019493 0.682261209 168 3300692 70.11 33395 mgs409525 CSB694_CTTGTA.R France NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 KastmanEK_2016__CSB694__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB694__bin.2 98.48901099 0.176609105 276 3234354 42.9 16290 mgs409525 CSB694_CTTGTA.R France NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. FalardeauJ_2023__SRR20811274__bin.6 KastmanEK_2016__CSB694__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861365 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB694__bin.4 83.60326689 4.651162791 505 3965576 62.49 12353 mgs409525 CSB694_CTTGTA.R France NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. KastmanEK_2016__CSB694__bin.4 KastmanEK_2016__CSB694__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB694__bin.6 90.7183908 1.724137931 203 1878560 40.59 12503 mgs409525 CSB694_CTTGTA.R France NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. KastmanEK_2016__CSB694__bin.6 KastmanEK_2016__CSB694__bin.6 Bacillota;Bacilli;Staphylococcales;Salinicoccaceae;Jeotgalicoccus NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB720__bin.3 83.63875737 1.635220126 465 1740087 34.92 4191 mgs409528 CSB720_AGTCAA.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. MAG_501 KastmanEK_2016__CSB720__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB720__bin.1 87.82407407 2.361111111 556 2190902 32.78 4758 mgs409528 CSB720_AGTCAA.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. YangC_2021__SRR13259378__bin.4 KastmanEK_2016__CSB720__bin.1 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB720__bin.2 91.8120155 1.162790698 632 3361402 63.24 7224 mgs409528 CSB720_AGTCAA.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. We6_bin.circ.9 KastmanEK_2016__CSB720__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB720__bin.9 60.84347248 0 500 1710974 55.73 3540 mgs409528 CSB720_AGTCAA.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. CM_UNINA_FFOOD__FFOOD_227__bin.5 KastmanEK_2016__CSB720__bin.9 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB720__bin.5 93.5 0.6 604 32443673 57.91 92837 mgs409528 CSB720_AGTCAA.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB720__bin.6 98.5 0.1 531 11686754 36.29 38103 mgs409528 CSB720_AGTCAA.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB726__bin.4 72.38244514 2.586206897 101 2236131 32.42 48596 mgs409531 CSB726_AGTTCC.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB729__bin.6 95.28301887 0.188679245 111 2222004 35.05 37405 mgs409534 CSB729_ATGTCA.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB729__bin.2 99.44444444 0.833333333 196 2791800 32.95 28957 mgs409534 CSB729_ATGTCA.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB729__bin.8 88.56589147 0.930232558 396 3230344 63.42 12227 mgs409534 CSB729_ATGTCA.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. We6_bin.circ.9 MAG_648 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB729__bin.9 99.41520468 0.584795322 135 3963043 70.29 55228 mgs409534 CSB729_ATGTCA.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB729__bin.7 92.92217327 0.308370044 264 2576667 55.63 13543 mgs409534 CSB729_ATGTCA.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. CM_UNINA_FFOOD__FFOOD_227__bin.5 KastmanEK_2016__CSB729__bin.7 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB729__bin.5 74.2 0.8 2345 10619670 36.05 5209 mgs409534 CSB729_ATGTCA.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. MASTER_WP4_UNINA_1__GO005_71775__bin.6 KastmanEK_2016__CSB729__bin.5 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB734__bin.9 98.51851852 1.48989899 244 2722063 32.85 20675 mgs409537 CSB734_CCGTCC.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB734__bin.2 99.90253411 3.319409635 240 3858314 70.45 29140 mgs409537 CSB734_CCGTCC.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB734__bin.4 92.31589147 1.695736434 283 3633002 63.67 23287 mgs409537 CSB734_CCGTCC.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. DeFilippisF_xxxx__DS_90__bin.4 KastmanEK_2016__CSB734__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sandarakinum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB734__bin.5 54 0.4 5865 17236568 59.47 3078 mgs409537 CSB734_CCGTCC.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. MASTER_WP4_CSIC_2__P2598__bin.8 KastmanEK_2016__CSB734__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis unknown cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB734__bin.8 98.9 0.1 606 11843306 36.28 34233 mgs409537 CSB734_CCGTCC.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB737__bin.1 92.77777778 0 129 2449634 32.94 34772 mgs409540 CSB737_GTCCGC.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB737__bin.4 68.41085271 1.01744186 165 1587812 62.89 13420 mgs409540 CSB737_GTCCGC.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. We6_bin.circ.9 KastmanEK_2016__CSB907__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB737__bin.3 92.49791145 0.584795322 57 3882125 70.39 125529 mgs409540 CSB737_GTCCGC.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB737__bin.5 96.00668338 3.50877193 70 3699449 70.68 87321 mgs409540 CSB737_GTCCGC.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. MASTER_WP4_FFoQSI_2__VB11-29__bin.23 KastmanEK_2016__CSB737__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp030457675 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB739__bin.1 99.44444444 1.064814815 125 2717525 32.89 46118 mgs409543 CSB739_GTGAAA.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB739__bin.2 98.34307992 2.680311891 432 3869801 70.29 13375 mgs409543 CSB739_GTGAAA.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. WolfeBE_2014__491_Bayley__bin.8 KastmanEK_2016__CSB739__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB870__bin.3 96.44509612 1.157407407 229 2662862 32.73 18382 mgs409546 CSB870_GTGGCC.R Spain NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB870__bin.2 94.57364341 0 222 3187029 63.28 22543 mgs409546 CSB870_GTGGCC.R Spain NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. We6_bin.circ.9 KastmanEK_2016__CSB870__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB875__bin.6 83.35271318 1.01744186 276 2445284 63.35 12551 mgs409549 CSB875_GTTTCG.R France NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB875__bin.10 86.5497076 1.461988304 413 3132476 70.39 11153 mgs409549 CSB875_GTTTCG.R France NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. WolfeBE_2014__771_Tarentaise__bin.3 MAG_652 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium tyrofermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB888__bin.4 98.10185185 3.526936027 423 2742782 32.85 8668 mgs409552 CSB888_CGTACG.R Italy NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. YangC_2021__SRR13259378__bin.4 KastmanEK_2016__CSB888__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB888__bin.2 51.00775194 0.290697674 769 1980443 62.74 2565 mgs409552 CSB888_CGTACG.R Italy NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. WolfeBE_2014__575_CabotClothbound__bin.6 KastmanEK_2016__CSB888__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB888__bin.3 69.3 0.3 2939 9598489 36.37 3585 mgs409552 CSB888_CGTACG.R Italy NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. MASTER_WP4_UNINA_1__GO005_71775__bin.6 KastmanEK_2016__CSB888__bin.3 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB907__bin.5 98.88888889 0.555555556 89 2575310 32.98 62694 mgs409555 CSB907_GAGTGG.R France NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB907__bin.6 94.86434109 0.968992248 325 3304242 63.29 15362 mgs409555 CSB907_GAGTGG.R France NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. We6_bin.circ.9 KastmanEK_2016__CSB907__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB907__bin.3 71.7027027 0.810810811 744 2582129 70.58 3949 mgs409555 CSB907_GAGTGG.R France NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. MASTER_WP4_TEAGASC_1__TGS14-30__bin.33 KastmanEK_2016__CSB907__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Dermatophilaceae;Janibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB962__bin.4 97.22222222 1.111111111 131 2685071 32.95 45291 mgs409558 CSB962_ACTGAT.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB962__bin.5 91.49224806 1.162790698 303 2964145 63.3 15929 mgs409558 CSB962_ACTGAT.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. We6_bin.circ.9 KastmanEK_2016__CSB907__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB962__bin.6 100 0.584795322 272 3827061 70.36 23850 mgs409558 CSB962_ACTGAT.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB962__bin.3 88.4948605 1.321585903 340 2398139 55.62 8706 mgs409558 CSB962_ACTGAT.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. CM_UNINA_FFOOD__FFOOD_227__bin.5 KastmanEK_2016__CSB962__bin.3 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB962__bin.13 99.6996997 0.195195195 98 3080405 69.16 69698 mgs409558 CSB962_ACTGAT.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_2__P2570__bin.32 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months KastmanEK_2016__CSB962__bin.2 88.97415272 1.816816817 458 2744614 67.12 7643 mgs409558 CSB962_ACTGAT.R USA NA NA MG-RAST Kastman, E.K., Kamelamela, N., Norville, J.W., Cosetta, C.M., Dutton, R.J., and Wolfe, B.E. (2016). Biotic Interactions Shape the Ecological Distributions of Staphylococcus Species. MBio 7. 10.1128/mBio.01157-16. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months LeechJ_2020__ERS3967688__bin.1 88.78626433 0.207943439 280 1712121 39.39 8284 ERS3967688 ERR4757803 Benin PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. Wy2_bin.circ.1 LeechJ_2020__ERS3967688__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months LeechJ_2020__ERS3967688__bin.3 81.6389795 3.258024244 358 1364724 37.46 4442 ERS3967688 ERR4757803 Benin PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. WalshAM_2017__ERS1739834__bin.1 LeechJ_2020__ERS3967689__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months LeechJ_2020__ERS3967688__bin.2 99.37169312 0.037202381 102 4434805 50.91 122530 ERS3967688 ERR4757803 Benin PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967688__bin.2 LeechJ_2020__ERS3967688__bin.2 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months LeechJ_2020__ERS3967688__bin.4 76.11358019 2.350501802 766 2692473 47.6 3815 ERS3967688 ERR4757803 Benin PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967688__bin.4 LeechJ_2020__ERS3967688__bin.4 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio cholerae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months LeechJ_2020__ERS3967689__bin.2 68.41616738 0.325709734 426 1215832 39.78 3040 ERS3967689 ERR4757804 Benin PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 LeechJ_2020__ERS3967689__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months LeechJ_2020__ERS3967689__bin.5 87.87765293 2.244069913 289 1435253 37.59 6345 ERS3967689 ERR4757804 Benin PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. WalshAM_2017__ERS1739834__bin.1 LeechJ_2020__ERS3967689__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months LeechJ_2020__ERS3967689__bin.4 95.78672083 1.030683107 226 4163654 51.07 33420 ERS3967689 ERR4757804 Benin PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967688__bin.2 LeechJ_2020__ERS3967688__bin.2 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months LeechJ_2020__ERS3967689__bin.3 59.63949843 1.724137931 1271 3629047 58.52 2944 ERS3967689 ERR4757804 Benin PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MAG_19 LeechJ_2020__ERS3967689__bin.3 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella pneumoniae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months LeechJ_2020__ERS3967689__bin.6 79.6 0.1 2100 8851697 39.69 4884 ERS3967689 ERR4757804 Benin PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. EBC_024.4 LeechJ_2020__ERS3967689__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces marxianus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235345__bin.10 79.91 0.13 61 1280475 50.83 33180 SAMN40275094 SRR28235345 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235345__bin.12 79.62 3.42 531 2019809 36.61 4560 SAMN40275094 SRR28235345 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. CM_UNINA_FFOOD__FFOOD_385__bin.9 MagliuloR_2024__SRR28235345__bin.12 Bacteroidota;Bacteroidia;Flavobacteriales;Weeksellaceae;Kaistella Kaistella haifensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235345__bin.14 50.74 0.2 24 878547 39.56 73784 SAMN40275094 SRR28235345 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235345__bin.5 59.89 3.18 149 2836900 58.17 29525 SAMN40275094 SRR28235345 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. MagliuloR_2024__SRR28235345__bin.5 MagliuloR_2024__SRR28235345__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E sp019345465 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235346__bin.8 64.96 0.26 42 995149 50.76 35741 SAMN40275093 SRR28235346 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235347__bin.1 57.03 0.05 37 829947 51.03 33728 SAMN40275092 SRR28235347 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235348__bin.10 70.7 0.13 58 1250388 39.36 30998 SAMN40275091 SRR28235348 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235348__bin.9 68.69 0.16 45 1142698 51.14 33581 SAMN40275091 SRR28235348 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235349__bin.1 90.08 1.15 164 1487515 43.66 12815 SAMN40275090 SRR28235349 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235349__bin.11 64.09 0.11 41 1057703 50.86 34119 SAMN40275090 SRR28235349 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235350__bin.5 52.4 0.51 175 629137 52.6 3726 SAMN40275133 SRR28235350 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. FontanaF_2023__SRR20746839__bin.4 MagliuloR_2024__SRR28235350__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235350__bin.8 76.95 3.71 530 1843060 36.78 3948 SAMN40275133 SRR28235350 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. CM_UNINA_FFOOD__FFOOD_385__bin.9 MASTER_WP4_UNINA_1__MZ011_71775__bin.5 Bacteroidota;Bacteroidia;Flavobacteriales;Weeksellaceae;Kaistella Kaistella haifensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235350__bin.9 59.65 0.1 39 960212 50.76 35191 SAMN40275133 SRR28235350 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235351__bin.5 72.74 0.57 81 1534318 35.36 30684 SAMN40275132 SRR28235351 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. MAG_501 MASTER_WP4_UNINA_2__O-23.1__bin.12 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235352__bin.11 58.91 3.02 353 1159644 39.31 3532 SAMN40275131 SRR28235352 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. CM_UNINA_FFOOD__FFOOD_270__bin.3 MagliuloR_2024__SRR28235352__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus suis AA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235352__bin.14 68.3 4.53 670 2022941 41.86 3146 SAMN40275131 SRR28235352 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. MASTER_WP4_FFoQSI_2__VB11-26__bin.7 MagliuloR_2024__SRR28235352__bin.14 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter johnsonii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235352__bin.5 80.82 3.61 353 1530775 40.53 5285 SAMN40275131 SRR28235352 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. FontanaF_2023__SRR20746866__bin.6 MagliuloR_2024__SRR28235352__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235353__bin.7 66.13 1.25 1008 3612970 36.71 4047 SAMN40275130 SRR28235353 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. CM_UNINA_FFOOD__FFOOD_281__bin.3 CM_UNINA_FFOOD__FFOOD_281__bin.3 Bacteroidota;Bacteroidia;Flavobacteriales;Weeksellaceae;Chryseobacterium Chryseobacterium carnipullorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235354__bin.3 78.41 0.33 61 1725871 35.23 46608 SAMN40275129 SRR28235354 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. MAG_501 MASTER_WP4_UNINA_2__O-23.1__bin.12 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235355__bin.1 53.29 0.03 39 981635 39.17 35260 SAMN40275128 SRR28235355 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. Wy2_bin.circ.1 DeFilippisF_xxxx__DF_30__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235355__bin.4 84.36 0.14 122 1491039 36.93 19595 SAMN40275128 SRR28235355 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235355__bin.6 87.76 0.15 70 1502737 50.77 32034 SAMN40275128 SRR28235355 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235356__bin.1 73.06 3.84 498 2123812 38.3 5181 SAMN40275127 SRR28235356 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. MagliuloR_2024__SRR28235359__bin.3 CM_UNINA_FFOOD__FFOOD_278__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235357__bin.10 54.13 0.11 82 2419015 64.58 44284 SAMN40275126 SRR28235357 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. CM_UNINA_FFOOD__FFOOD_277__bin.12 CM_UNINA_FFOOD__FFOOD_277__bin.12 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E palmensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235357__bin.6 50.99 3.38 224 3444832 60.77 23753 SAMN40275126 SRR28235357 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. CM_UNINA_FFOOD__FFOOD_277__bin.14 CM_UNINA_FFOOD__FFOOD_277__bin.14 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E sp002874965 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235358__bin.2 67 2.05 385 1427313 39.06 3921 SAMN40275125 SRR28235358 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. DeFilippisF_xxxx__DF_100__bin.11 CM_UNINA_FFOOD__FFOOD_276__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A carnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235358__bin.3 52.71 0.22 40 923204 51.03 30669 SAMN40275125 SRR28235358 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235359__bin.2 91.47 0.13 65 1521870 50.71 33393 SAMN40275089 SRR28235359 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235359__bin.3 100 0.03 104 2687659 38.56 53116 SAMN40275089 SRR28235359 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. MagliuloR_2024__SRR28235359__bin.3 MagliuloR_2024__SRR28235359__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235360__bin.6 70.75 0.52 49 1112849 50.43 29309 SAMN40275124 SRR28235360 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235361__bin.5 67.47 2.16 489 1936526 38.45 4562 SAMN40275123 SRR28235361 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. MagliuloR_2024__SRR28235359__bin.3 MagliuloR_2024__SRR28235361__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235362__bin.5 50.6 0.15 36 845412 51.05 29699 SAMN40275122 SRR28235362 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235363__bin.6 93.84 2.81 266 2442572 34.75 23360 SAMN40275121 SRR28235363 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. MAG_501 MASTER_WP4_UNINA_2__O-23.1__bin.12 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235364__bin.2 88.48 0.4 98 2169572 35.02 48742 SAMN40275120 SRR28235364 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. MAG_501 MASTER_WP4_UNINA_2__O-23.1__bin.12 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235365__bin.11 73.54 0.13 50 1209430 50.54 32724 SAMN40275119 SRR28235365 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235365__bin.5 79.85 0.07 44 2134193 38.36 86917 SAMN40275119 SRR28235365 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. MagliuloR_2024__SRR28235359__bin.3 MagliuloR_2024__SRR28235392__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235365__bin.7 89.49 0.04 132 1753781 39.63 18219 SAMN40275119 SRR28235365 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. CM_UNINA_FFOOD__FFOOD_270__bin.3 CM_UNINA_FFOOD__FFOOD_270__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus suis AA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235365__bin.9 85.85 3.87 257 1666397 37.49 8990 SAMN40275119 SRR28235365 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. DeFilippisF_xxxx__DF_104__bin.4 DeFilippisF_xxxx__DF_104__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus macedonicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235366__bin.3 94.59 0.1 123 1980028 35.25 29134 SAMN40275118 SRR28235366 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235366__bin.5 70.97 0.06 72 988082 51.33 18812 SAMN40275118 SRR28235366 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235367__bin.3 78.49 0.09 95 1152744 51.57 16251 SAMN40275117 SRR28235367 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235367__bin.4 92.26 0.55 143 1652781 36.47 15838 SAMN40275117 SRR28235367 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235367__bin.9 50.76 0.71 54 1040787 34.97 33833 SAMN40275117 SRR28235367 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235368__bin.5 54.45 0.29 80 980919 36.34 18881 SAMN40275116 SRR28235368 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235368__bin.8 83.13 0.74 134 1452034 50.73 15271 SAMN40275116 SRR28235368 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235369__bin.10 60.83 0.25 49 1092103 50.73 31270 SAMN40275115 SRR28235369 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235369__bin.5 56.24 0.19 30 992456 39.51 67488 SAMN40275115 SRR28235369 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235369__bin.6 78.1 1.69 309 1673479 38.86 6269 SAMN40275115 SRR28235369 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. DeFilippisF_xxxx__DF_100__bin.11 MagliuloR_2024__SRR28235369__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A carnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235370__bin.1 68.56 0.16 42 1015409 50.85 36128 SAMN40275088 SRR28235370 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235370__bin.4 89.36 4.16 423 5718293 60.54 19661 SAMN40275088 SRR28235370 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. AlvarezOrdonezA_xxxx__C02-19__bin.3 CM_UNINA_FFOOD__FFOOD_237__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235370__bin.7 87.83 1.52 75 4266925 45.27 113282 SAMN40275088 SRR28235370 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. MagliuloR_2024__SRR28235370__bin.7 MagliuloR_2024__SRR28235370__bin.7 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Shewanellaceae;Shewanella Shewanella oncorhynchi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235371__bin.12 50.47 0.16 39 875121 50.84 35014 SAMN40275114 SRR28235371 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235373__bin.7 75.99 0.11 83 1225461 50.74 23282 SAMN40275112 SRR28235373 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235374__bin.1 96.74 1.15 343 2757664 38.04 12346 SAMN40275111 SRR28235374 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. MagliuloR_2024__SRR28235359__bin.3 MagliuloR_2024__SRR28235359__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235374__bin.11 54.05 0.07 19 958173 39.2 76182 SAMN40275111 SRR28235374 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235374__bin.6 54.01 0.08 35 935316 50.84 32724 SAMN40275111 SRR28235374 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235374__bin.9 94.71 0.43 141 2207152 35.03 30166 SAMN40275111 SRR28235374 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. MAG_501 MASTER_WP4_UNINA_2__O-23.1__bin.12 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235375__bin.13 67.43 0.17 95 1172907 36.43 19546 SAMN40275110 SRR28235375 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235375__bin.2 53.95 0 28 837495 50.39 33732 SAMN40275110 SRR28235375 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235375__bin.9 64.23 0.09 35 1130571 39.35 38637 SAMN40275110 SRR28235375 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235376__bin.8 99.59 0.86 294 4341136 59.41 21839 SAMN40275109 SRR28235376 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. CM_UNINA_FFOOD__FFOOD_260__bin.12 CM_UNINA_FFOOD__FFOOD_260__bin.12 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Aeromonadaceae;Aeromonas Aeromonas salmonicida cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235377__bin.1 50.51 1.13 441 1463524 47.9 3562 SAMN40275108 SRR28235377 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. MagliuloR_2024__SRR28235377__bin.1 MagliuloR_2024__SRR28235377__bin.1 Bacillota;Bacilli;Exiguobacteriales;Exiguobacteriaceae;Exiguobacterium_A Exiguobacterium A acetylicum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235377__bin.13 79.25 0.07 53 1291788 50.91 32038 SAMN40275108 SRR28235377 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235378__bin.4 59.9 0.18 76 968720 36.26 17585 SAMN40275107 SRR28235378 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235378__bin.6 69.25 0.07 45 1069127 50.98 42464 SAMN40275107 SRR28235378 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235379__bin.2 73.47 0.05 41 1222923 39.46 44970 SAMN40275106 SRR28235379 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235379__bin.5 52.07 1.08 152 839868 53.27 6659 SAMN40275106 SRR28235379 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. FontanaF_2023__SRR20746839__bin.4 CM_UNINA_FFOOD__FFOOD_257__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235380__bin.11 60.15 2.3 229 982783 37.92 4860 SAMN40275105 SRR28235380 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. WalshAM_2017__ERS1739834__bin.1 CM_UNINA_FFOOD__FFOOD_256__bin.10 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235380__bin.2 51.14 0 16 1681455 46.81 199314 SAMN40275105 SRR28235380 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. CM_UNINA_FFOOD__FFOOD_256__bin.2 CM_UNINA_FFOOD__FFOOD_256__bin.2 Bacillota;Bacilli;Exiguobacteriales;Exiguobacteriaceae;Exiguobacterium_A Exiguobacterium A acetylicum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235380__bin.4 60.32 0.54 129 1530261 34.78 19159 SAMN40275105 SRR28235380 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. MAG_501 CM_UNINA_FFOOD__FFOOD_256__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235380__bin.8 61.76 0.03 63 920737 51.11 21499 SAMN40275105 SRR28235380 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235381__bin.8 63.2 0.44 35 924373 50.78 35474 SAMN40275087 SRR28235381 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235383__bin.13 99.95 2.13 150 4774081 44.36 76119 SAMN40275103 SRR28235383 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. CM_UNINA_FFOOD__FFOOD_254__bin.8 CM_UNINA_FFOOD__FFOOD_254__bin.8 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Marinomonadaceae;Marinomonas Marinomonas spartinae A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235383__bin.8 99.14 0.17 273 2718297 38.51 14803 SAMN40275103 SRR28235383 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. MagliuloR_2024__SRR28235359__bin.3 MagliuloR_2024__SRR28235359__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235383__bin.9 72.94 0.47 268 1360758 39.98 6002 SAMN40275103 SRR28235383 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. CM_UNINA_FFOOD__FFOOD_270__bin.3 CM_UNINA_FFOOD__FFOOD_254__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus suis AA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235385__bin.6 51.43 0.07 78 1308159 34.83 29192 SAMN40275101 SRR28235385 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. MAG_501 MASTER_WP4_CSIC_2__P2573__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235386__bin.13 93.88 0.19 287 3970143 62.31 21711 SAMN40275100 SRR28235386 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. CM_UNINA_FFOOD__FFOOD_251__bin.10 CM_UNINA_FFOOD__FFOOD_251__bin.10 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Aeromonadaceae;Aeromonas Aeromonas caviae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235386__bin.14 94.31 1.19 193 4459497 50.93 39709 SAMN40275100 SRR28235386 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. LeechJ_2020__ERS3967688__bin.2 CM_UNINA_FFOOD__FFOOD_251__bin.12 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235386__bin.2 92.85 0.57 209 2096995 35.46 15393 SAMN40275100 SRR28235386 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. MAG_501 CM_UNINA_FFOOD__FFOOD_251__bin.9 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235387__bin.5 55.49 0.09 22 990215 39.3 67170 SAMN40275099 SRR28235387 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235390__bin.3 58.31 0.58 498 1674278 38.65 3627 SAMN40275096 SRR28235390 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. MagliuloR_2024__SRR28235359__bin.3 MagliuloR_2024__SRR28235390__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235390__bin.4 55.03 0.18 42 872960 51.05 25680 SAMN40275096 SRR28235390 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235391__bin.3 54.11 0.12 26 968807 43.83 58337 SAMN40275095 SRR28235391 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235392__bin.2 57.01 0.04 195 3069053 59.92 22923 SAMN40275086 SRR28235392 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. AlvarezOrdonezA_xxxx__Q04-26__bin.13 CM_UNINA_FFOOD__FFOOD_230__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E haemolytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MagliuloR_2024__SRR28235392__bin.5 99.99 0.05 148 2681280 38.47 32859 SAMN40275086 SRR28235392 Italy PRJNA1084214 SRP493534 NCBI Magarelli M, Novielli P, De Filippis F, Magliulo R, Di Bitonto P, Diacono D, Bellotti R, Tangaro S. Explainable artificial intelligence and microbiome data for food geographical origin: the Mozzarella di Bufala Campana PDO Case of Study. Front Microbiol. 2024 Jun 3;15:1393243. doi: 10.3389/fmicb.2024.1393243. MagliuloR_2024__SRR28235359__bin.3 MagliuloR_2024__SRR28235392__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2_200_75211__bin.4 87.20796676 0.252525253 134 1902831 34.83 19803 SAMN36690350 SRR25394836 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2_200_75211__bin.7 67.24137931 0 97 1412154 35.74 18323 SAMN36690350 SRR25394836 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2_200_75211__bin.3 50.79365079 0.176366843 33 982086 39.34 35623 SAMN36690350 SRR25394836 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2143_73322__bin.3 60.32392894 3.448275862 444 1876118 34.49 5084 SAMN36690089 SRR25395456 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_CSIC_1__P2143_73322__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2143_73322__bin.12 60.52631579 3.50877193 358 2270617 58.6 7574 SAMN36690089 SRR25395456 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_900618535.1_TH39_genomic MASTER_WP4_CSIC_1__P2143_73322__bin.12 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E bubulae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2143_73322__bin.15 50.35087719 1.754385965 517 3489955 59.45 8769 SAMN36690089 SRR25395456 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__CS001_71775__bin.6 MASTER_WP4_CSIC_1__P2143_73322__bin.15 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E lundensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2144_73322__bin.1 56.25909753 0.145560408 49 865574 40.03 22345 SAMN36690090 SRR25395455 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2144_73322__bin.14 79.23497268 2.276867031 29 2478431 34.19 256315 SAMN36690090 SRR25395455 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2146_73322__bin.6 MASTER_WP4_CSIC_1__P2146_73322__bin.6 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Carnobacterium Carnobacterium maltaromaticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2145_73322__bin.12 63.38797814 0.455373406 35 1486156 34.08 248511 SAMN36690091 SRR25395454 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2146_73322__bin.6 MASTER_WP4_CSIC_1__P2146_73322__bin.6 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Carnobacterium Carnobacterium maltaromaticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2145_73322__bin.13 82.71159875 3.448275862 124 1682885 35.56 20451 SAMN36690091 SRR25395454 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2145_73322__bin.8 56.6091954 1.724137931 355 1337848 39.07 4234 SAMN36690091 SRR25395454 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.11 MASTER_WP4_CSIC_1__P2145_73322__bin.8 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A carnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2145_73322__bin.20 58.77192982 1.754385965 522 3127439 59.07 7648 SAMN36690091 SRR25395454 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_900618535.1_TH39_genomic MASTER_WP4_CSIC_1__P2146_73322__bin.14 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E bubulae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2146_73322__bin.4 54.36781609 0 292 967257 34.79 3511 SAMN36690092 SRR25395453 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_CSIC_1__P2146_73322__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2146_73322__bin.1 78.49344978 0.145560408 77 1283822 39.5 24024 SAMN36690092 SRR25395453 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2146_73322__bin.6 98.90710383 4.918032787 181 3590488 34.31 38648 SAMN36690092 SRR25395453 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2146_73322__bin.6 MASTER_WP4_CSIC_1__P2146_73322__bin.6 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Carnobacterium Carnobacterium maltaromaticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2146_73322__bin.14 62.28070175 1.754385965 367 3744088 58.81 14421 SAMN36690092 SRR25395453 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_900618535.1_TH39_genomic MASTER_WP4_CSIC_1__P2146_73322__bin.14 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E bubulae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2147_73322__bin.39 78.47439916 0 379 1938788 34.59 6355 SAMN36690390 SRR25395374 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_CSIC_1__P2147_73322__bin.39 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2147_73322__bin.53 92.65873016 0.899470899 227 1413214 37.99 7846 SAMN36690390 SRR25395374 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2147_73322__bin.48 99.24528302 0.754716981 91 2431781 35.57 57919 SAMN36690390 SRR25395374 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2147_73322__bin.37 98.88888889 1.805555556 266 2935442 32.61 35114 SAMN36690390 SRR25395374 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2147_73322__bin.35 95.73643411 3.003875969 508 3749749 63.26 11033 SAMN36690390 SRR25395374 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 KastmanEK_2016__CSB907__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2147_73322__bin.22 96.52615144 1.839120982 278 2581486 34.84 15794 SAMN36690390 SRR25395374 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.17 DeFilippisF_xxxx__DF_100__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Marinilactibacillus Marinilactibacillus psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2147_73322__bin.24 95.99497126 2.155172414 198 3943146 54.48 32126 SAMN36690390 SRR25395374 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2147_73322__bin.24 MASTER_WP4_CSIC_1__P2147_73322__bin.24 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella colorata cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2147_73322__bin.15 97.8 0.1 207 11608108 36.27 153200 SAMN36690390 SRR25395374 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2149_73322__bin.1 72.02194357 1.724137931 365 1781829 34.87 6563 SAMN36690392 SRR25395372 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_CSIC_1__P2149_73322__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2149_73322__bin.26 88.65239699 2.133469875 276 1351448 38.12 6139 SAMN36690392 SRR25395372 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2149_73322__bin.8 58.49056604 0 28 1172918 35.82 108860 SAMN36690392 SRR25395372 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2149_73322__bin.32 93.65740741 1.111111111 248 2691443 32.98 37902 SAMN36690392 SRR25395372 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2149_73322__bin.31 70.8774084 0.73664825 497 1798643 35.31 4212 SAMN36690392 SRR25395372 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.17 MASTER_WP4_CSIC_1__P2149_73322__bin.31 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Marinilactibacillus Marinilactibacillus psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2149_73322__bin.17 67.24137931 0 263 1806061 37 8653 SAMN36690392 SRR25395372 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308520__bin.4 MASTER_WP4_CSIC_1__P2149_73322__bin.17 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2149_73322__bin.22 53.21100917 0.180209699 52 2411043 56.23 79017 SAMN36690392 SRR25395372 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_114__bin.22 MASTER_WP4_UNINA_1__FO005_71775__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2149_73322__bin.12 52.5862069 0 21 1177963 56.81 126361 SAMN36690392 SRR25395372 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_114__bin.22 MASTER_WP4_CSIC_1__P2149_73322__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2149_73322__bin.30 98.1 0.1 228 11565075 36.3 114533 SAMN36690392 SRR25395372 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2153_73322__bin.1 66.66666667 0 18 1136813 37.69 132986 SAMN36690081 SRR25395205 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2153_73322__bin.3 56.14035088 0 48 848061 39.12 29519 SAMN36690081 SRR25395205 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2153_73322__bin.7 77.93794742 1.006289308 201 1460403 39.25 8440 SAMN36690081 SRR25395205 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MASTER_WP4_CSIC_1__P2153_73322__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2154_73322__bin.2 93.12169312 0 25 1474634 37.81 96166 SAMN36690082 SRR25395204 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2154_73322__bin.5 54.38596491 0 42 839304 39.07 32127 SAMN36690082 SRR25395204 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2154_73322__bin.10 84.40251572 0.789022298 190 1711057 39.14 11041 SAMN36690082 SRR25395204 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MASTER_WP4_CSIC_1__P2154_73322__bin.10 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2155_73322__bin.8 54.26332288 0 85 1143037 35.08 19541 SAMN36690083 SRR25395202 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2155_73322__bin.5 98.85646015 0 30 1605889 37.83 96165 SAMN36690083 SRR25395202 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2155_73322__bin.13 54.32098765 0 42 813353 39.34 29520 SAMN36690083 SRR25395202 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2155_73322__bin.12 84.6049171 1.635220126 183 1670384 39.27 12065 SAMN36690083 SRR25395202 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2155_73322__bin.6 65.51724138 0 35 1542680 34.2 85070 SAMN36690083 SRR25395202 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.17 MASTER_WP4_CSIC_1__P2155_73322__bin.6 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Marinilactibacillus Marinilactibacillus psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2156_73322__bin.8 98.75405359 0.264550265 30 1609918 37.82 96165 SAMN36690084 SRR25395201 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2156_73322__bin.7 91.35802469 0 79 1534588 39.36 29520 SAMN36690084 SRR25395201 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2156_73322__bin.1 85.56603774 1.383647799 190 1686827 39.19 11129 SAMN36690084 SRR25395201 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MASTER_WP4_CSIC_1__P2154_73322__bin.10 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2157_73322__bin.7 95.76719577 0.017067759 42 1625809 37.81 96166 SAMN36690382 SRR25395122 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2157_73322__bin.2 66.13756614 0.017067759 59 1128356 39.6 28454 SAMN36690382 SRR25395122 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2157_73322__bin.8 90.28587764 3.270440252 245 1940323 39 9805 SAMN36690382 SRR25395122 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2158_73322__bin.1 96.82539683 0.017067759 27 1515251 37.86 96166 SAMN36690383 SRR25395120 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2158_73322__bin.5 83.06878307 0.017067759 64 1377748 39.56 35470 SAMN36690383 SRR25395120 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2158_73322__bin.3 50.83194215 0.503144654 118 906499 39.85 9014 SAMN36690383 SRR25395120 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MASTER_WP4_CSIC_1__P2158_73322__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2160_73322__bin.2 70.8994709 0 21 1281086 37.77 132986 SAMN36690385 SRR25395118 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2160_73322__bin.6 59.64912281 0 49 923290 39.14 29520 SAMN36690385 SRR25395118 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2160_73322__bin.7 69.34356433 1.540880503 191 1473260 39.09 8953 SAMN36690385 SRR25395118 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MASTER_WP4_CSIC_1__P2160_73322__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2163_73322__bin.4 74.45141066 0 190 1653742 35.41 12760 SAMN36690129 SRR25395245 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2164_73322__bin.5 78.73449089 0.50036390100000006 139 1191159 39.28 9782 SAMN36690130 SRR25395244 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 MASTER_WP4_CSIC_1__P2164_73322__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2164_73322__bin.2 62.06896552 0 137 1500350 35.53 15084 SAMN36690130 SRR25395244 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2165_73322__bin.6 96.0751682 1.018922853 111 1606811 39.14 22441 SAMN36690131 SRR25395243 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2165_73322__bin.10 56.52037618 1.724137931 264 844656 41.24 3490 SAMN36690131 SRR25395243 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 MASTER_WP4_TEAGASC_1__TGS14-22__bin.31 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2165_73322__bin.4 61.30242826 0.165562914 359 1476696 56.93 4717 SAMN36690131 SRR25395243 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308537__bin.18 MASTER_WP4_CSIC_1__P2165_73322__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia endophytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2166_73322__bin.12 93.61353712 0.938864629 129 1498177 39.5 18323 SAMN36690132 SRR25395242 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2166_73322__bin.1 96.02649007 1.545253863 296 2273652 56.25 9673 SAMN36690132 SRR25395242 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308537__bin.18 MASTER_WP4_CSIC_1__P2166_73322__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia endophytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2167_73322__bin.2 99.45652174 0.407608696 92 1792099 42.05 32751 SAMN36690430 SRR25394987 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2167_73322__bin.6 75.31347962 0 239 1753146 35.4 10136 SAMN36690430 SRR25394987 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2167_73322__bin.10 85.69444444 1.905615293 494 2617020 32.76 7366 SAMN36690430 SRR25394987 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_CSIC_1__P2167_73322__bin.10 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2167_73322__bin.5 94.47674419 2.61627907 417 3553839 63.21 12892 SAMN36690430 SRR25394987 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 KastmanEK_2016__CSB870__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2168_73322__bin.6 87.02121023 1.237263464 163 1442844 39.19 11382 SAMN36690431 SRR25394986 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2168_73322__bin.4 69.46708464 0 162 1696384 35.51 14877 SAMN36690431 SRR25394986 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2169_73322__bin.5 70.17241379 0 172 1637908 35.43 13916 SAMN36690432 SRR25394985 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2170_73322__bin.4 95.92391304 0.679347826 133 1637239 42.24 17941 SAMN36690433 SRR25394983 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2170_73322__bin.3 68.4169279 0 231 1592437 35.39 9378 SAMN36690433 SRR25394983 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2173_73322__bin.9 68.60501567 0 378 1437231 35.07 4621 SAMN36690145 SRR25394896 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_CSIC_1__P2173_73322__bin.9 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2174_73322__bin.4 63.93740902 0.145560408 26 1044930 39.61 59154 SAMN36690146 SRR25394895 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2174_73322__bin.6 78.9184953 0 107 1788196 35.59 25517 SAMN36690146 SRR25394895 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2175_73322__bin.5 61.38975967 0 281 1132969 35.06 4715 SAMN36690147 SRR25394894 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_CSIC_1__P2175_73322__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2175_73322__bin.3 56.95050946 0.145560408 20 924158 39.54 59154 SAMN36690147 SRR25394894 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2175_73322__bin.4 83.08678692 1.100628931 113 1763467 35.47 23790 SAMN36690147 SRR25394894 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2176_73322__bin.2 59.63949843 1.724137931 260 1122897 35.1 5044 SAMN36690148 SRR25394893 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_CSIC_1__P2176_73322__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2176_73322__bin.3 50.10917031 0 19 800926 39.56 55092 SAMN36690148 SRR25394893 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2177_73322__bin.10 64.92163009 1.724137931 280 1124385 35.25 4568 SAMN36690447 SRR25394812 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_CSIC_1__P2177_73322__bin.10 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2177_73322__bin.7 75.81504702 1.724137931 143 1693158 35.35 19023 SAMN36690447 SRR25394812 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2177_73322__bin.9 69.82758621 0 39 1263065 32.71 64118 SAMN36690447 SRR25394812 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2177_73322__bin.4 96.81766267 1.963241437 301 2623261 33.09 14142 SAMN36690447 SRR25394812 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2177_73322__bin.4 MASTER_WP4_CSIC_1__P2177_73322__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus caprae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2177_73322__bin.3 90.6 0.3 893 24219095 52.09 43424 SAMN36690447 SRR25394812 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_105__bin.8 DeFilippisF_xxxx__DS_105__bin.8 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;unknown unknown cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2178_73322__bin.3 70.64263323 0 91 1512879 35.5 24454 SAMN36690448 SRR25394811 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2179_73322__bin.5 68.59979101 1.724137931 428 1398073 35 3457 SAMN36690449 SRR25394810 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_CSIC_1__P2179_73322__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2179_73322__bin.2 93.55178996 1.163522013 157 2272905 35.57 23790 SAMN36690449 SRR25394810 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2180_73322__bin.7 53.05642633 0 72 974207 35.6 21389 SAMN36690450 SRR25394809 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2183_73322__bin.3 81.79220077 0.247844828 408 2282348 61.87 6633 SAMN36690125 SRR25395249 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic MASTER_WP4_CSIC_1__P2183_73322__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2184_73322__bin.5 93.58169445 0.411922015 402 5233505 61.36 22285 SAMN36690126 SRR25395248 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2184_73322__bin.5 MASTER_WP4_CSIC_1__P2184_73322__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E sp012985465 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2187_73322__bin.4 84.47517787 0.789595368 549 4230974 61.11 12023 SAMN36690426 SRR25394991 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2184_73322__bin.5 MASTER_WP4_CSIC_1__P2187_73322__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E sp012985465 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2188_73322__bin.11 80.09375 1.267361111 173 1806639 46.36 12636 SAMN36690427 SRR25394990 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2189_73322__bin.9 51.72413793 0 50 2414339 60.69 70795 SAMN36690428 SRR25394989 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2184_73322__bin.5 MASTER_WP4_CSIC_1__P2184_73322__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E sp012985465 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2190_73322__bin.1 84.0625 0 22 1139656 46.15 101723 SAMN36690429 SRR25394988 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2190_73322__bin.4 62.06896552 1.724137931 63 2652967 60.89 56991 SAMN36690429 SRR25394988 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2184_73322__bin.5 MASTER_WP4_CSIC_1__P2184_73322__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E sp012985465 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2193_73323__bin.6 75.22244068 0.315656566 97 1586907 34.95 24160 SAMN36690045 SRR25394923 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2193_73323__bin.5 76.20689655 0 83 1411723 35.72 23094 SAMN36690045 SRR25394923 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2193_73323__bin.3 93.12169312 0 105 1634180 39.29 23165 SAMN36690045 SRR25394923 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2194_73323__bin.3 93.77082778 0.315656566 127 2046136 34.84 24893 SAMN36690046 SRR25394922 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2194_73323__bin.5 76.67711599 0 96 1599343 35.67 23911 SAMN36690046 SRR25394922 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2194_73323__bin.2 86.41660368 0 176 1534105 39.23 11444 SAMN36690046 SRR25394922 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2195_73323__bin.2 81.19437594 0.315656566 116 1726557 34.98 22858 SAMN36690047 SRR25394921 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2195_73323__bin.1 69.78056426 0 87 1386623 35.78 22152 SAMN36690047 SRR25394921 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2196_73323__bin.4 94.65237048 0.315656566 114 2082889 34.95 29220 SAMN36690048 SRR25394920 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2196_73323__bin.2 56.03448276 0 77 791497 39.77 11099 SAMN36690048 SRR25394920 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2196_73323__bin.6 72.75862069 0 93 1532154 35.77 21389 SAMN36690048 SRR25394920 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2196_73323__bin.5 82.30032754 0.264550265 193 1453632 39.31 8750 SAMN36690048 SRR25394920 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2197_73323__bin.3 59.43573668 0 70 1093481 35.21 22306 SAMN36690351 SRR25394835 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2197_73323__bin.4 99.47089947 0.176366843 55 1729779 39.28 39709 SAMN36690351 SRR25394835 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2198_73323__bin.1 91.97789849 0.252525253 127 2046769 34.87 22329 SAMN36690352 SRR25394834 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2198_73323__bin.7 93.08678692 0.72327044 143 2170925 35.25 20691 SAMN36690352 SRR25394834 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2198_73323__bin.3 81.1287478 0 28 1071846 39.28 46336 SAMN36690352 SRR25394834 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2199_73323__bin.3 73.16476717 0.126262626 91 1544557 35.04 24199 SAMN36690353 SRR25394832 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2199_73323__bin.4 62.88401254 0 67 1200934 35.76 22264 SAMN36690353 SRR25394832 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2199_73323__bin.1 94.17989418 0.176366843 52 1618033 39.26 39709 SAMN36690353 SRR25394832 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2213_73323__bin.1 61.15987461 0 77 1122735 35.64 22537 SAMN36690073 SRR25395213 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2214_73323__bin.1 55.67398119 0 147 995831 35.09 8791 SAMN36690074 SRR25395212 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2215_73323__bin.2 50.5015674 0 145 908499 35.17 8926 SAMN36690075 SRR25395211 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2215_73323__bin.5 59.98518403 0.942503639 77 952091 39.9 16878 SAMN36690075 SRR25395211 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2216_73323__bin.4 59.43573668 0 136 1003887 35.08 9501 SAMN36690076 SRR25395210 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2216_73323__bin.3 69.78056426 0 88 1276015 35.66 23270 SAMN36690076 SRR25395210 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2217_73323__bin.14 64.55630069 0.997088792 74 1083263 39.7 21079 SAMN36690378 SRR25395126 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2217_73323__bin.7 89.78849665 0.974842767 170 2143645 35.47 21841 SAMN36690378 SRR25395126 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2217_73323__bin.1 98.7654321 2.777777778 86 2755143 44.96 44528 SAMN36690378 SRR25395126 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2217_73323__bin.6 93.84259259 1.481481481 323 2498887 32.95 11607 SAMN36690378 SRR25395126 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2217_73323__bin.4 98.9375 0.78125 100 3150317 40.03 48080 SAMN36690378 SRR25395126 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 LeechJ_2020__ERS3967690__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2217_73323__bin.8 94.1 0.2 1125 31953210 48.49 46060 SAMN36690378 SRR25395126 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__O-30__bin.13 MASTER_WP4_UNINA_2__O-30__bin.13 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium camemberti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2217_73323__bin.9 97.7 0.4 4417 43071105 35.17 13342 SAMN36690378 SRR25395126 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2217_73323__bin.9 MASTER_WP4_CSIC_1__P2217_73323__bin.9 Mucoromycota;Mucoromycetes;Mucorales;Mucoraceae;unknown unknown cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2218_73323__bin.7 74.13793103 0 200 2321311 46.69 15530 SAMN36690379 SRR25395125 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 LandisEA_2021__SRS5653132__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2218_73323__bin.2 55.98746082 0 82 1024991 35.73 22334 SAMN36690379 SRR25395125 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2218_73323__bin.10 52.77777778 0.617283951 46 1984935 44.83 61589 SAMN36690379 SRR25395125 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2218_73323__bin.4 98.9375 0.78125 98 3107262 40.02 48623 SAMN36690379 SRR25395125 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 LeechJ_2020__ERS3967690__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2219_73323__bin.18 66.28595689 0.57496361 85 1085330 39.63 16653 SAMN36690380 SRR25395124 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2219_73323__bin.3 56.89655172 0 101 1492729 35.28 23523 SAMN36690380 SRR25395124 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2219_73323__bin.8 99.38271605 2.777777778 66 2898796 44.86 74185 SAMN36690380 SRR25395124 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2219_73323__bin.1 96.75925926 1.296296296 254 2710072 32.81 17769 SAMN36690380 SRR25395124 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2219_73323__bin.6 98.9375 0.78125 100 3079267 40.02 48080 SAMN36690380 SRR25395124 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 LeechJ_2020__ERS3967690__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2219_73323__bin.9 91.2 0.3 1639 31164672 48.57 27736 SAMN36690380 SRR25395124 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__O-30__bin.13 MASTER_WP4_UNINA_2__O-30__bin.13 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium camemberti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2219_73323__bin.17 97.2 0.5 4711 42965380 35.17 12411 SAMN36690380 SRR25395124 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2217_73323__bin.9 MASTER_WP4_CSIC_1__P2217_73323__bin.9 Mucoromycota;Mucoromycetes;Mucorales;Mucoraceae;unknown unknown cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2220_73323__bin.1 76.85090272 0.27173913 278 2164877 46.81 9438 SAMN36690381 SRR25395123 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 LandisEA_2021__SRS5653132__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2220_73323__bin.3 59.43573668 0 88 1099974 35.61 22055 SAMN36690381 SRR25395123 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2220_73323__bin.6 79.32098765 1.851851852 47 2308449 45.05 74185 SAMN36690381 SRR25395123 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2220_73323__bin.2 98.9375 0.78125 108 3169553 39.99 48080 SAMN36690381 SRR25395123 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 LeechJ_2020__ERS3967690__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2223_73323__bin.8 71.81818182 0 183 1330601 35.19 10240 SAMN36690141 SRR25394901 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2223_73323__bin.2 61.98482013 0.305676856 57 971086 39.67 24188 SAMN36690141 SRR25394901 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2223_73323__bin.5 71.09895977 0.220125786 142 1533744 35.49 20578 SAMN36690141 SRR25394901 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2224_73323__bin.7 73.22884013 0 191 1335260 35.17 9910 SAMN36690142 SRR25394900 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2224_73323__bin.2 59.15124419 0.58224163 47 919223 39.8 26780 SAMN36690142 SRR25394900 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2224_73323__bin.14 70.64263323 0 127 1383434 35.57 18603 SAMN36690142 SRR25394900 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2224_73323__bin.6 82.32977031 1.506849315 423 2053826 38.41 5763 SAMN36690142 SRR25394900 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MagliuloR_2024__SRR28235359__bin.3 MASTER_WP4_CSIC_1__P2224_73323__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2224_73323__bin.3 54.31034483 3.448275862 1009 5488114 60.33 6612 SAMN36690142 SRR25394900 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2224_73323__bin.3 MASTER_WP4_CSIC_1__P2224_73323__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2224_73323__bin.4 92.95354027 1.531895777 261 1830500 39.28 9489 SAMN36690142 SRR25394900 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2230_73323__bin.3 MASTER_WP4_CSIC_1__P2230_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus dysgalactiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2225_73323__bin.1 64.60815047 0 165 1185167 35.15 9910 SAMN36690143 SRR25394898 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2225_73323__bin.3 68.05642633 0 116 1412880 35.68 21260 SAMN36690143 SRR25394898 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2225_73323__bin.5 94.03773585 3.575920934 156 1988781 38.9 21686 SAMN36690143 SRR25394898 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.11 MASTER_WP4_CSIC_1__P2229_73323__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A carnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2226_73323__bin.5 62.88401254 0 179 1260128 35.21 10659 SAMN36690144 SRR25394897 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2226_73323__bin.8 90.21845663 0.974842767 154 1971341 35.54 22231 SAMN36690144 SRR25394897 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2226_73323__bin.7 92.43396226 3.198562444 247 1939477 38.97 10372 SAMN36690144 SRR25394897 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.11 MASTER_WP4_CSIC_1__P2229_73323__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A carnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2227_73323__bin.8 98.23899371 0.188679245 140 2066648 35.06 24283 SAMN36690443 SRR25394816 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2227_73323__bin.9 59.16787967 0.58224163 61 970902 40.14 22482 SAMN36690443 SRR25394816 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2227_73323__bin.3 74.43384974 0.407608696 393 1812629 46.94 5413 SAMN36690443 SRR25394816 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_1__P2227_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2227_73323__bin.7 90.99756543 0.880503145 153 1954732 35.53 21994 SAMN36690443 SRR25394816 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2227_73323__bin.1 88.89937107 1.590909091 108 1959873 38.8 35995 SAMN36690443 SRR25394816 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.11 MASTER_WP4_CSIC_1__P2229_73323__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A carnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2227_73323__bin.6 65.43887147 0 313 1696773 39.56 6664 SAMN36690443 SRR25394816 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2230_73323__bin.3 MASTER_WP4_CSIC_1__P2230_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus dysgalactiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2227_73323__bin.5 76.9 1.2 2911 12014389 36.05 4667 SAMN36690443 SRR25394816 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_CSIC_1__P2227_73323__bin.5 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2228_73323__bin.11 89.40173361 0.505050505 190 1811192 35.06 14536 SAMN36690444 SRR25394815 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2228_73323__bin.8 52.77292576 0.609534207 51 842584 40.21 22482 SAMN36690444 SRR25394815 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2228_73323__bin.10 92.84327388 0.675863991 144 2229663 46.78 20563 SAMN36690444 SRR25394815 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2228_73323__bin.9 90.87025766 0.503144654 146 2014463 35.47 24455 SAMN36690444 SRR25394815 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2228_73323__bin.2 77.82714547 0.094339623 80 1585898 39.07 30568 SAMN36690444 SRR25394815 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2230_73323__bin.3 MASTER_WP4_CSIC_1__P2230_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus dysgalactiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2229_73323__bin.7 76.10062893 0 103 1514989 35.24 25250 SAMN36690445 SRR25394814 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2229_73323__bin.5 56.43030429 0.20014556 54 884088 40.1 24301 SAMN36690445 SRR25394814 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2229_73323__bin.4 94.43396226 1.257861635 79 2093441 38.8 46087 SAMN36690445 SRR25394814 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.11 MASTER_WP4_CSIC_1__P2229_73323__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A carnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2229_73323__bin.11 63.81765988 0 311 1213731 39.5 4406 SAMN36690445 SRR25394814 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2230_73323__bin.3 MASTER_WP4_CSIC_1__P2229_73323__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus dysgalactiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2229_73323__bin.2 82.2 0.5 1850 11432328 36.11 7908 SAMN36690445 SRR25394814 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2230_73323__bin.1 92.21916671 0.691823899 202 1993684 34.87 15152 SAMN36690446 SRR25394813 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2230_73323__bin.7 90.77232151 0.974842767 159 2007482 35.49 22875 SAMN36690446 SRR25394813 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2230_73323__bin.3 91.14751236 0.5234718 142 1859757 39.42 20305 SAMN36690446 SRR25394813 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2230_73323__bin.3 MASTER_WP4_CSIC_1__P2230_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus dysgalactiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2233_73323__bin.8 95.22012579 0.943396226 251 1857781 35.28 10648 SAMN36690137 SRR25395235 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2233_73323__bin.19 78.49344978 0.145560408 28 1350864 39.27 91009 SAMN36690137 SRR25395235 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2233_73323__bin.13 99.62546816 0.124843945 42 2794885 37.59 138967 SAMN36690137 SRR25395235 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2235_73323__bin.9 MASTER_WP4_CSIC_1__P2235_73323__bin.9 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2233_73323__bin.6 77.34606104 2.716284987 610 2206377 35.5 4223 SAMN36690137 SRR25395235 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS14-28__bin.1 MASTER_WP4_CSIC_1__P2236_73323__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus uberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2233_73323__bin.4 99.33774834 1.214128035 123 2892855 36.33 44240 SAMN36690137 SRR25395235 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967702__bin.3 MASTER_WP4_CSIC_1__P2233_73323__bin.4 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Kurthia Kurthia gibsonii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2233_73323__bin.20 96.13259669 1.104972376 32 2022721 36.84 105090 SAMN36690137 SRR25395235 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308520__bin.4 MASTER_WP4_CSIC_1__P2233_73323__bin.20 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2233_73323__bin.2 89.07057422 3.464419476 462 2172559 38.43 5900 SAMN36690137 SRR25395235 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS12-29__bin.6 MASTER_WP4_CSIC_1__P2235_73323__bin.13 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B faecium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2233_73323__bin.10 71.01334518 2.128726537 1247 4079267 66.62 3570 SAMN36690137 SRR25395235 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2235_73323__bin.20 MASTER_WP4_CSIC_1__P2233_73323__bin.10 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas Pseudomonas aeruginosa cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2233_73323__bin.12 97.8 0.2 231 11630056 36.25 107700 SAMN36690137 SRR25395235 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2233_73323__bin.17 78.2 0.1 2238 11719946 38.68 6620 SAMN36690137 SRR25395235 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2574__bin.24 MASTER_WP4_CSIC_2__P2574__bin.24 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Candida Candida parapsilosis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2233_73323__bin.18 97.2 0.1 195 11376284 35.59 124782 SAMN36690137 SRR25395235 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2233_73323__bin.18 MASTER_WP4_CSIC_1__P2233_73323__bin.18 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces fabryi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2234_73323__bin.4 78.84879641 1.01010101 358 1457968 35.14 5030 SAMN36690138 SRR25394904 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 FontanaF_2023__SRR20746939__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2234_73323__bin.14 74.56331878 0.145560408 22 1282349 39.29 91009 SAMN36690138 SRR25394904 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2234_73323__bin.11 99.62546816 0.124843945 48 2838450 37.44 138967 SAMN36690138 SRR25394904 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2235_73323__bin.9 MASTER_WP4_CSIC_1__P2235_73323__bin.9 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2234_73323__bin.2 87.42543523 0.654665275 106 4006683 51.1 57653 SAMN36690138 SRR25394904 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967688__bin.2 MAG_122 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2234_73323__bin.6 93.21155943 0.572519084 105 1883023 36.46 33051 SAMN36690138 SRR25394904 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS14-28__bin.1 MASTER_WP4_CSIC_1__P2236_73323__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus uberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2234_73323__bin.10 79.24493554 2.348066298 312 1844750 36.65 7518 SAMN36690138 SRR25394904 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308520__bin.4 MASTER_WP4_CSIC_1__P2233_73323__bin.20 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2234_73323__bin.7 92.86119623 2.028714107 347 2551288 37.78 9794 SAMN36690138 SRR25394904 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS12-29__bin.6 MASTER_WP4_CSIC_1__P2235_73323__bin.13 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B faecium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2234_73323__bin.8 96.59220164 2.059487305 301 4538465 55.62 24181 SAMN36690138 SRR25394904 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746854__bin.2 MASTER_WP4_CSIC_1__P2235_73323__bin.23 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter Enterobacter intestinihominis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2234_73323__bin.3 96.1 0.1 261 26687366 49.01 174821 SAMN36690138 SRR25394904 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2235_73323__bin.2 86.70162015 1.458713735 375 1553836 35.28 4978 SAMN36690139 SRR25394903 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 FontanaF_2023__SRR20746939__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2235_73323__bin.7 55.93158661 0 17 841965 39.73 91009 SAMN36690139 SRR25394903 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2235_73323__bin.9 99.62546816 0 44 2803520 37.56 138967 SAMN36690139 SRR25394903 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2235_73323__bin.9 MASTER_WP4_CSIC_1__P2235_73323__bin.9 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2235_73323__bin.22 98.14545083 2.184813421 202 4663692 50.8 37889 SAMN36690139 SRR25394903 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967688__bin.2 MAG_122 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2235_73323__bin.5 92.7480916 0 30 1881398 36.41 128689 SAMN36690139 SRR25394903 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS14-28__bin.1 MASTER_WP4_CSIC_1__P2236_73323__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus uberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2235_73323__bin.6 98.01324503 1.876379691 116 2737481 36.48 42988 SAMN36690139 SRR25394903 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967702__bin.3 MASTER_WP4_CSIC_1__P2233_73323__bin.4 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Kurthia Kurthia gibsonii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2235_73323__bin.19 54.6961326 0 31 1342966 36.49 89971 SAMN36690139 SRR25394903 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308520__bin.4 MASTER_WP4_CSIC_1__P2233_73323__bin.20 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2235_73323__bin.13 99.54089646 0.428036383 104 2531687 38.11 43600 SAMN36690139 SRR25394903 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS12-29__bin.6 MASTER_WP4_CSIC_1__P2235_73323__bin.13 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B faecium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2235_73323__bin.20 71.1315981 0.934343434 1224 4020190 66.75 3524 SAMN36690139 SRR25394903 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2235_73323__bin.20 MASTER_WP4_CSIC_1__P2235_73323__bin.20 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas Pseudomonas aeruginosa cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2235_73323__bin.23 96.67617394 0.452516234 93 4655439 55.57 87808 SAMN36690139 SRR25394903 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746854__bin.2 MASTER_WP4_CSIC_1__P2235_73323__bin.23 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter Enterobacter intestinihominis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2235_73323__bin.16 96.3 0.2 148 11344049 36.27 184670 SAMN36690139 SRR25394903 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2236_73323__bin.3 77.92580982 0 357 1478208 35.18 5164 SAMN36690140 SRR25394902 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 FontanaF_2023__SRR20746939__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2236_73323__bin.6 64.51965066 0.145560408 20 1072615 39.43 97726 SAMN36690140 SRR25394902 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2236_73323__bin.5 99.62546816 0.124843945 38 2772686 37.57 138967 SAMN36690140 SRR25394902 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2235_73323__bin.9 MASTER_WP4_CSIC_1__P2235_73323__bin.9 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2236_73323__bin.11 93.41769683 2.462389628 447 4144943 51.15 12973 SAMN36690140 SRR25394902 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967688__bin.2 MAG_122 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2236_73323__bin.2 97.51908397 0.763358779 93 2058863 36.27 43848 SAMN36690140 SRR25394902 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS14-28__bin.1 MASTER_WP4_CSIC_1__P2236_73323__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus uberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2236_73323__bin.12 95.02762431 1.104972376 35 2011030 36.85 105090 SAMN36690140 SRR25394902 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308520__bin.4 MASTER_WP4_CSIC_1__P2233_73323__bin.20 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2236_73323__bin.13 95.18151797 1.732209738 348 2610429 37.77 10381 SAMN36690140 SRR25394902 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS12-29__bin.6 MASTER_WP4_CSIC_1__P2235_73323__bin.13 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B faecium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2236_73323__bin.10 98.17971588 0.736735982 182 4644039 55.55 44200 SAMN36690140 SRR25394902 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746854__bin.2 MASTER_WP4_CSIC_1__P2235_73323__bin.23 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter Enterobacter intestinihominis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2236_73323__bin.7 96 0.1 241 26596081 49.01 212403 SAMN36690140 SRR25394902 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2237_73323__bin.14 85.90116279 0.872093023 466 2746844 63.27 8232 SAMN36690439 SRR25394977 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_CSIC_1__P2237_73323__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2237_73323__bin.4 98.83040936 1.461988304 448 4041831 70.16 14328 SAMN36690439 SRR25394977 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2237_73323__bin.20 89.31718062 0.504160548 233 2355220 55.66 15097 SAMN36690439 SRR25394977 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2237_73323__bin.9 93.96396396 0.990990991 116 2864433 67.54 41430 SAMN36690439 SRR25394977 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 FalardeauJ_2023__SRR20811223__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2237_73323__bin.30 97.87537538 0.690690691 91 2957522 67.03 61459 SAMN36690439 SRR25394977 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2237_73323__bin.19 62.06896552 3.448275862 567 2367084 54.66 4481 SAMN36690439 SRR25394977 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811293__bin.2 MASTER_WP4_CSIC_1__P2237_73323__bin.19 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella citrativorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2237_73323__bin.23 84.71248247 2.628936631 323 1611513 38 6362 SAMN36690439 SRR25394977 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2239_73323__bin.20 MASTER_WP4_CSIC_1__P2239_73323__bin.20 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2237_73323__bin.10 95.35519126 2.874056727 249 2138964 36.41 15003 SAMN36690439 SRR25394977 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_CSIC_1__P2239_73323__bin.21 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2237_73323__bin.33 96.73913043 1.770421607 146 1861053 33.82 23467 SAMN36690439 SRR25394977 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2239_73323__bin.32 MASTER_WP4_CSIC_1__P2239_73323__bin.32 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2237_73323__bin.3 92.25543478 3.369565217 218 1675659 31.12 11878 SAMN36690439 SRR25394977 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2558__bin.17 MASTER_WP4_CSIC_2__P2558__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2237_73323__bin.13 56.6091954 3.448275862 235 1506162 34.13 8924 SAMN36690439 SRR25394977 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2558__bin.48 MASTER_WP4_CSIC_2__P2558__bin.48 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2237_73323__bin.8 89.65127465 1.394901395 110 2124099 50.11 43867 SAMN36690439 SRR25394977 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2237_73323__bin.8 MASTER_WP4_CSIC_1__P2237_73323__bin.8 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Idiomarina NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2237_73323__bin.21 96 0.1 196 26561288 49.02 321607 SAMN36690439 SRR25394977 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2238_73323__bin.11 74.71264368 0 336 1499238 35.12 5561 SAMN36690440 SRR25394820 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2238_73323__bin.2 91.35802469 2.370931538 170 2519402 45.17 19310 SAMN36690440 SRR25394820 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_CSIC_1__P2238_73323__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2238_73323__bin.10 72.18543046 1.324503311 255 1431972 35.85 7119 SAMN36690440 SRR25394820 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 MASTER_WP4_CSIC_1__P2240_73323__bin.10 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2238_73323__bin.7 99.62546816 0.468164794 41 2762548 37.58 138832 SAMN36690440 SRR25394820 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2235_73323__bin.9 MASTER_WP4_CSIC_1__P2235_73323__bin.9 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2238_73323__bin.9 91.30060835 0.220264317 191 2510302 55.75 18572 SAMN36690440 SRR25394820 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2238_73323__bin.1 98.84156122 1.79558011 128 2517369 35.94 28530 SAMN36690440 SRR25394820 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF24__bin.1 MASTER_WP4_CSIC_1__P2238_73323__bin.1 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus simulans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2238_73323__bin.12 92.1192053 0 84 2457048 35.77 51456 SAMN36690440 SRR25394820 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2238_73323__bin.12 MASTER_WP4_CSIC_1__P2238_73323__bin.12 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus solitarius cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2238_73323__bin.3 96.2 0.1 171 26699593 48.95 334468 SAMN36690440 SRR25394820 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2239_73323__bin.30 93.87626263 2.430555556 237 1986002 35.17 11625 SAMN36690441 SRR25394819 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2239_73323__bin.24 85.31976744 2.131782946 432 2746496 63.3 8700 SAMN36690441 SRR25394819 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_CSIC_1__P2237_73323__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2239_73323__bin.25 95.12670565 1.656920078 659 3614848 70.32 7035 SAMN36690441 SRR25394819 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2239_73323__bin.26 73.16446402 0.954478708 146 1805655 55.37 19296 SAMN36690441 SRR25394819 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2239_73323__bin.33 95.1539039 1.689189189 304 3232061 69.08 16546 SAMN36690441 SRR25394819 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_2__P2570__bin.32 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2239_73323__bin.4 94.41012441 1.666666667 262 2824864 67.81 16951 SAMN36690441 SRR25394819 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 FalardeauJ_2023__SRR20811223__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2239_73323__bin.13 98.16066066 0.540540541 82 2919653 67.07 65850 SAMN36690441 SRR25394819 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2239_73323__bin.20 95.07246377 2.608111267 185 1961256 37.73 15894 SAMN36690441 SRR25394819 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2239_73323__bin.20 MASTER_WP4_CSIC_1__P2239_73323__bin.20 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2239_73323__bin.21 91.93989071 1.275045537 197 1965896 36.42 17785 SAMN36690441 SRR25394819 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_CSIC_1__P2239_73323__bin.21 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2239_73323__bin.32 95.65217391 1.408102767 128 1598999 34.17 19898 SAMN36690441 SRR25394819 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2239_73323__bin.32 MASTER_WP4_CSIC_1__P2239_73323__bin.32 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2239_73323__bin.22 87.42883023 2.083333333 223 1602130 31.29 10759 SAMN36690441 SRR25394819 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2558__bin.17 MASTER_WP4_CSIC_2__P2558__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2239_73323__bin.3 98.5915493 1.584507042 189 2480933 28.36 22235 SAMN36690441 SRR25394819 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB07-30__bin.41 MASTER_WP4_CSIC_1__P2239_73323__bin.3 Bacillota;Clostridia;Tissierellales;SIT17;Anaeromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2239_73323__bin.17 95.4 0.1 386 26565947 49.04 125873 SAMN36690441 SRR25394819 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2239_73323__bin.10 57.9 0.3 2665 9907698 35.63 4256 SAMN36690441 SRR25394819 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_CSIC_1__P2239_73323__bin.10 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2240_73323__bin.18 68.28631139 0 403 1443611 35.19 4427 SAMN36690442 SRR25394818 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_CSIC_1__P2240_73323__bin.18 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2240_73323__bin.7 95.04852014 0.58224163 152 1723603 38.87 17989 SAMN36690442 SRR25394818 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2240_73323__bin.10 72.49448124 0.242825607 299 1634857 35.86 7046 SAMN36690442 SRR25394818 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 MASTER_WP4_CSIC_1__P2240_73323__bin.10 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2240_73323__bin.15 96.47577093 1.982378855 135 2783623 55.59 32394 SAMN36690442 SRR25394818 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2240_73323__bin.17 92.27373068 3.973509934 378 2465722 35.73 8999 SAMN36690442 SRR25394818 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2238_73323__bin.12 MASTER_WP4_CSIC_1__P2238_73323__bin.12 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus solitarius cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2240_73323__bin.2 95.2 0.1 151 26293798 49.01 361189 SAMN36690442 SRR25394818 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2243_73323__bin.14 92.36945346 2.989583333 376 1984090 46.53 6200 SAMN36690133 SRR25395240 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_CSIC_1__P2243_73323__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2243_73323__bin.13 76.52037618 0 306 2470038 34.67 14231 SAMN36690133 SRR25395240 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2243_73323__bin.11 95.76459177 2.897542246 347 2559386 46.72 10145 SAMN36690133 SRR25395240 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_1__P2243_73323__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2243_73323__bin.16 83.13045242 0.125786164 244 1761356 35.57 9785 SAMN36690133 SRR25395240 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2243_73323__bin.18 85.51620714 2.975698544 437 1919112 36.65 5609 SAMN36690133 SRR25395240 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 MASTER_WP4_CSIC_1__P2243_73323__bin.18 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2243_73323__bin.19 85.97172619 3.072443182 410 2234987 43.89 6611 SAMN36690133 SRR25395240 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2243_73323__bin.2 96.4673913 0 113 1809158 38.7 31491 SAMN36690133 SRR25395240 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008632615.1_ASM863261v1_genomic GCF_008632615.1_ASM863261v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus nenjiangensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2243_73323__bin.9 95.5 0.1 181 26588887 48.99 346886 SAMN36690133 SRR25395240 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2243_73323__bin.15 51 0.4 1502 7261203 55.95 5651 SAMN36690133 SRR25395240 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. C-R03.bin.3 MASTER_WP4_CSIC_1__P2243_73323__bin.15 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Scheffersomyces Scheffersomyces stipitis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2243_73323__bin.17 99.5 0.1 75 10508101 38.73 279872 SAMN36690133 SRR25395240 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2246_73323__bin.19 MASTER_WP4_CSIC_1__P2246_73323__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2243_73323__bin.1 95.6 0.3 297 20087401 49.04 111013 SAMN36690133 SRR25395240 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0052-001_Yarrowia_lipolytica_CBA6003 ODFM-BA-A-0052-001_Yarrowia_lipolytica_CBA6003 Ascomycota;Saccharomycetes;Saccharomycetales;Dipodascaceae;Yarrowia Yarrowia lipolytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2243_73323__bin.6 95 0.1 885 11912332 36.27 22113 SAMN36690133 SRR25395240 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2244_73323__bin.19 72.75339603 0 208 1923119 34.86 15965 SAMN36690134 SRR25395239 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2244_73323__bin.11 55.1985371 1.724137931 329 1542203 40.36 5774 SAMN36690134 SRR25395239 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 WalshL_xxxx__F1__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2244_73323__bin.7 93.74721293 1.468436455 279 2443770 46.78 12158 SAMN36690134 SRR25395239 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2244_73323__bin.10 92.18553459 2.075471698 270 1884513 35.78 9719 SAMN36690134 SRR25395239 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2244_73323__bin.12 76.21753247 0 83 1382921 36.96 24218 SAMN36690134 SRR25395239 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2244_73323__bin.6 98.91304348 0.27173913 136 1972726 38.7 26465 SAMN36690134 SRR25395239 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008632615.1_ASM863261v1_genomic GCF_008632615.1_ASM863261v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus nenjiangensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2244_73323__bin.4 94.7 0.1 171 26223949 49.01 332796 SAMN36690134 SRR25395239 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2244_73323__bin.1 94.2 0.3 459 19524131 49.07 66380 SAMN36690134 SRR25395239 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0052-001_Yarrowia_lipolytica_CBA6003 ODFM-BA-A-0052-001_Yarrowia_lipolytica_CBA6003 Ascomycota;Saccharomycetes;Saccharomycetales;Dipodascaceae;Yarrowia Yarrowia lipolytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2244_73323__bin.3 99.4 0 43 10455751 38.72 461918 SAMN36690134 SRR25395239 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2246_73323__bin.19 MASTER_WP4_CSIC_1__P2246_73323__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2245_73323__bin.24 96.77083333 2.291666667 384 2348633 46.13 7757 SAMN36690135 SRR25395238 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_CSIC_1__P2245_73323__bin.24 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2245_73323__bin.25 73.36956522 0 76 1420995 42.03 34343 SAMN36690135 SRR25395238 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2245_73323__bin.4 51.3322884 0 151 1424129 34.7 17663 SAMN36690135 SRR25395238 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2245_73323__bin.5 64.23988713 0.911371237 472 1657535 47.05 3863 SAMN36690135 SRR25395238 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_1__P2245_73323__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2245_73323__bin.16 66.82427747 0.377358491 208 1308371 35.76 7694 SAMN36690135 SRR25395238 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2245_73323__bin.15 91.10663082 2.777777778 459 2897421 32.65 10438 SAMN36690135 SRR25395238 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2245_73323__bin.22 98.91304348 0.27173913 155 2060997 38.75 27195 SAMN36690135 SRR25395238 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008632615.1_ASM863261v1_genomic GCF_008632615.1_ASM863261v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus nenjiangensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2245_73323__bin.10 95.1 0.1 412 26538157 49.03 113722 SAMN36690135 SRR25395238 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2245_73323__bin.20 91.3 0.3 255 19188714 49.02 132371 SAMN36690135 SRR25395238 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0052-001_Yarrowia_lipolytica_CBA6003 ODFM-BA-A-0052-001_Yarrowia_lipolytica_CBA6003 Ascomycota;Saccharomycetes;Saccharomycetales;Dipodascaceae;Yarrowia Yarrowia lipolytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2245_73323__bin.26 92.7 0.8 1074 11527974 36.22 16273 SAMN36690135 SRR25395238 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2245_73323__bin.18 99 0.7 69 10528801 38.72 462300 SAMN36690135 SRR25395238 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2246_73323__bin.19 MASTER_WP4_CSIC_1__P2246_73323__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2246_73323__bin.8 94.0307971 2.72296544 242 2478623 46.68 14159 SAMN36690136 SRR25395237 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2246_73323__bin.13 56.94879833 0 133 962346 35.82 8662 SAMN36690136 SRR25395237 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2246_73323__bin.3 98.9375 0.625 49 2290981 43.88 61309 SAMN36690136 SRR25395237 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2246_73323__bin.5 55.17241379 0 71 1129752 35.8 27626 SAMN36690136 SRR25395237 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2246_73323__bin.15 66.35416667 1.25 48 982644 45.76 28260 SAMN36690136 SRR25395237 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 FontanaF_2023__SRR20746964__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2246_73323__bin.10 73.02371542 0 53 931911 38.44 27269 SAMN36690136 SRR25395237 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008632615.1_ASM863261v1_genomic GCF_008632615.1_ASM863261v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus nenjiangensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2246_73323__bin.11 95.1 0.1 162 26451795 49 341060 SAMN36690136 SRR25395237 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2246_73323__bin.19 99.5 0 41 10473390 38.72 463725 SAMN36690136 SRR25395237 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2246_73323__bin.19 MASTER_WP4_CSIC_1__P2246_73323__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2247_73323__bin.18 65.64700771 1.759259259 450 1663024 32.87 4135 SAMN36690435 SRR25394981 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_CSIC_1__P2247_73323__bin.18 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2247_73323__bin.15 60.83820663 0.487329435 491 2190906 70.19 5309 SAMN36690435 SRR25394981 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__771_Tarentaise__bin.3 MASTER_WP4_CSIC_1__P2247_73323__bin.15 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium tyrofermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2247_73323__bin.28 90.30898876 0 21 1400734 43.78 99925 SAMN36690435 SRR25394981 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0094-002_Leuconostoc_lactis_WIKIM21 MASTER_WP4_CSIC_2__P2559__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2247_73323__bin.19 82.20935221 1.017803518 632 2560643 69.41 4707 SAMN36690435 SRR25394981 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_1__P2247_73323__bin.19 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2247_73323__bin.8 58.73143294 1.108562691 499 1955773 65.01 4353 SAMN36690435 SRR25394981 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259376__bin.8 MASTER_WP4_CSIC_1__P2247_73323__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Arthrobacter_H Arthrobacter H rhombi A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2247_73323__bin.27 85.25747508 2.810077519 334 3984718 62.61 18119 SAMN36690435 SRR25394981 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q03-30__bin.5 MASTER_WP4_CSIC_1__P2247_73323__bin.27 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2247_73323__bin.6 97.63379205 0.573394495 53 3196356 69.25 88524 SAMN36690435 SRR25394981 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2588__bin.45 MASTER_WP4_CSIC_1__P2247_73323__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Citricoccus Citricoccus nitrophenolicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2247_73323__bin.3 86.11111111 2.059386973 155 1946820 40.97 17041 SAMN36690435 SRR25394981 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2247_73323__bin.3 MASTER_WP4_CSIC_1__P2247_73323__bin.3 Bacillota;Bacilli;Staphylococcales;Salinicoccaceae;Jeotgalicoccus Jeotgalicoccus sp947631305 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2247_73323__bin.10 98.3 0.1 199 11641857 36.27 127082 SAMN36690435 SRR25394981 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2248_73323__bin.6 93.75 3.162202381 292 2111374 46.31 9678 SAMN36690436 SRR25394980 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 FontanaF_2023__SRR20746964__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2248_73323__bin.1 58.90000865 1.902173913 332 1044899 42.35 3371 SAMN36690436 SRR25394980 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2248_73323__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2248_73323__bin.5 93.99096525 0.490560641 384 2502605 46.8 8258 SAMN36690436 SRR25394980 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_1__P2248_73323__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2248_73323__bin.2 96.50943396 1.320754717 304 2193368 35.6 10179 SAMN36690436 SRR25394980 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2248_73323__bin.13 97.83950617 3.086419753 147 2924971 45.19 39983 SAMN36690436 SRR25394980 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_CSIC_1__P2249_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2248_73323__bin.11 98.9375 0 53 2330116 43.86 65952 SAMN36690436 SRR25394980 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2248_73323__bin.8 92.86684783 1.902173913 210 2360478 38.79 19947 SAMN36690436 SRR25394980 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008632615.1_ASM863261v1_genomic GCF_008632615.1_ASM863261v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus nenjiangensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2248_73323__bin.10 95.5 0.1 164 26483185 48.99 359456 SAMN36690436 SRR25394980 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2249_73323__bin.28 83.81717023 1.962560386 375 2096912 47.01 6591 SAMN36690437 SRR25394979 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_1__P2249_73323__bin.28 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2249_73323__bin.23 93.44565558 2.201257862 230 1948332 35.68 12216 SAMN36690437 SRR25394979 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_CSIC_1__P2249_73323__bin.23 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2249_73323__bin.3 98.7654321 2.777777778 65 2631526 45.16 66713 SAMN36690437 SRR25394979 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_CSIC_1__P2249_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2249_73323__bin.5 78.46277343 3.311258278 404 2141384 35.34 6662 SAMN36690437 SRR25394979 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 MASTER_WP4_CSIC_1__P2249_73323__bin.5 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2249_73323__bin.1 60.16556291 2.483443709 330 1479759 37.43 5400 SAMN36690437 SRR25394979 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2235_73323__bin.9 MASTER_WP4_CSIC_1__P2249_73323__bin.1 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2249_73323__bin.18 98.9375 0 58 2347786 43.84 64263 SAMN36690437 SRR25394979 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2249_73323__bin.10 80.12481645 1.395007342 291 2201803 55.62 9269 SAMN36690437 SRR25394979 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2249_73323__bin.19 50 0 23 647803 45.76 44015 SAMN36690437 SRR25394979 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 FontanaF_2023__SRR20746964__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2249_73323__bin.6 98.91304348 0.996376812 125 1994608 38.56 27620 SAMN36690437 SRR25394979 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008632615.1_ASM863261v1_genomic GCF_008632615.1_ASM863261v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus nenjiangensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2249_73323__bin.14 61.18022329 0 618 3053906 37.93 5789 SAMN36690437 SRR25394979 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. C-R06.bin.10 C-R06.bin.10 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Proteus Proteus vulgaris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2249_73323__bin.15 76.76600442 1.986754967 152 1596228 35.42 14685 SAMN36690437 SRR25394979 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2249_73323__bin.15 MASTER_WP4_CSIC_1__P2249_73323__bin.15 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus Vagococcus silagei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2249_73323__bin.24 96 0.1 193 26643643 48.99 288305 SAMN36690437 SRR25394979 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2249_73323__bin.20 93.3 0.3 470 19598042 49.05 60922 SAMN36690437 SRR25394979 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0052-001_Yarrowia_lipolytica_CBA6003 ODFM-BA-A-0052-001_Yarrowia_lipolytica_CBA6003 Ascomycota;Saccharomycetes;Saccharomycetales;Dipodascaceae;Yarrowia Yarrowia lipolytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2249_73323__bin.26 68 3.5 2191 9237159 38.63 4878 SAMN36690437 SRR25394979 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2246_73323__bin.19 MASTER_WP4_CSIC_1__P2246_73323__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2250_73323__bin.3 99.45652174 0 62 1796069 41.94 55414 SAMN36690438 SRR25394978 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2250_73323__bin.25 68.3908046 0 334 1873315 34.75 7356 SAMN36690438 SRR25394978 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_CSIC_1__P2250_73323__bin.25 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2250_73323__bin.14 83.76498049 1.201009612 501 1988983 46.84 4423 SAMN36690438 SRR25394978 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_1__P2250_73323__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2250_73323__bin.5 88.70793844 0.628930818 300 1843346 35.8 8413 SAMN36690438 SRR25394978 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2250_73323__bin.1 97.38372093 3.217054264 632 3738706 63.18 8633 SAMN36690438 SRR25394978 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_CSIC_1__P2237_73323__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2250_73323__bin.19 93.38699495 0.625 139 2266975 42.57 27475 SAMN36690438 SRR25394978 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2250_73323__bin.13 97.12858926 2.408682695 247 2744312 37.62 17767 SAMN36690438 SRR25394978 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2235_73323__bin.9 CM_UNINA_FFOOD__FFOOD_338__bin.20 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2250_73323__bin.22 60.34482759 1.724137931 332 3006822 43.67 14664 SAMN36690438 SRR25394978 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FranciosaI_2021__SRR12227952__bin.4 WalshAM_2020__ERS3466758__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraplantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2250_73323__bin.29 77.06896552 3.448275862 157 3351607 46.62 31867 SAMN36690438 SRR25394978 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YasirM_2022__SRR18335011__bin.1 MASTER_WP4_CSIC_1__P2250_73323__bin.29 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus pentosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2250_73323__bin.12 98.91304348 0.27173913 138 1936234 38.58 26860 SAMN36690438 SRR25394978 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008632615.1_ASM863261v1_genomic GCF_008632615.1_ASM863261v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus nenjiangensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2250_73323__bin.11 97.35099338 1.490066225 303 2943521 36.08 17208 SAMN36690438 SRR25394978 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_2__bin.27 DeFilippisF_xxxx__DS_2__bin.27 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus koreensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2250_73323__bin.28 95.5 0.1 171 26471321 48.98 341060 SAMN36690438 SRR25394978 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2250_73323__bin.17 76.8 0.3 2194 10449576 36.15 5847 SAMN36690438 SRR25394978 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_1__P2250_73323__bin.8 99.5 0 45 10493342 38.73 420490 SAMN36690438 SRR25394978 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2246_73323__bin.19 MASTER_WP4_CSIC_1__P2246_73323__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2478__bin.11 77.96836775 1.058201058 180 1294267 37.89 8360 SAMN36690049 SRR25394919 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2478__bin.7 94.97354497 0 74 1578098 39.38 35373 SAMN36690049 SRR25394919 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2478__bin.13 76.18867925 0.503144654 80 1556165 39.04 30513 SAMN36690049 SRR25394919 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2478__bin.4 53.44827586 0 134 2786851 60.56 30411 SAMN36690049 SRR25394919 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__C02-19__bin.3 MASTER_WP4_CSIC_2__P2485__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2479__bin.13 56.94311536 0 203 1066756 37.88 5787 SAMN36690050 SRR25394918 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2479__bin.14 95.14991182 1.058201058 80 1618113 39.37 29520 SAMN36690050 SRR25394918 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2479__bin.10 72.98113208 0.503144654 80 1444667 39.41 25276 SAMN36690050 SRR25394918 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2479__bin.4 54.00815217 0.27173913 253 3813048 60.34 20803 SAMN36690050 SRR25394918 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__C02-19__bin.3 MASTER_WP4_CSIC_2__P2479__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2480__bin.5 91.42359887 0.132275132 148 1498287 37.78 12873 SAMN36690051 SRR25394917 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2480__bin.15 97.44268078 0.529100529 76 1578329 39.41 32726 SAMN36690051 SRR25394917 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2480__bin.9 68.11320755 0.440251572 67 1383944 39.07 29747 SAMN36690051 SRR25394917 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2481__bin.6 64.05956113 2.586206897 159 1455390 34.72 16415 SAMN36690052 SRR25394916 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2481__bin.2 99.47089947 0.264550265 76 1662564 39.34 36282 SAMN36690052 SRR25394916 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2481__bin.7 60.34482759 0 877 3462257 60.93 4487 SAMN36690052 SRR25394916 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__C02-19__bin.3 MASTER_WP4_CSIC_2__P2481__bin.7 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2482__bin.8 58.02507837 0 116 1263010 35.14 18959 SAMN36690354 SRR25394831 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2482__bin.6 100 0 72 1669551 39.35 35625 SAMN36690354 SRR25394831 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2483__bin.11 52.85266458 0 132 1237556 34.98 14789 SAMN36690355 SRR25394830 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_CSIC_1__P2192_73323__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2483__bin.7 99.47089947 0 72 1634521 39.35 35449 SAMN36690355 SRR25394830 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2483__bin.1 77.77987421 2.389937107 231 1486966 39.38 8198 SAMN36690355 SRR25394830 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2483__bin.10 68.10344828 0 697 4940031 60.54 9233 SAMN36690355 SRR25394830 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__C02-19__bin.3 MASTER_WP4_CSIC_2__P2485__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2484__bin.8 51.99059561 0 176 960079 35.92 6703 SAMN36690356 SRR25394829 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2484__bin.6 98.94179894 0 72 1646083 39.35 37502 SAMN36690356 SRR25394829 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2485__bin.9 98.41269841 0 80 1645214 39.34 35470 SAMN36690357 SRR25394828 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2485__bin.2 58.35040431 0.566037736 283 1151822 39.49 4680 SAMN36690357 SRR25394828 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2485__bin.4 77.86047446 1.335346806 868 4210385 60.84 6190 SAMN36690357 SRR25394828 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__C02-19__bin.3 MASTER_WP4_CSIC_2__P2485__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2493__bin.4 56.95050946 0.145560408 24 900480 39.9 53127 SAMN36690359 SRR25394826 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2494__bin.1 57.57575758 0 38 1085897 35.14 40651 SAMN36690360 SRR25394825 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2494__bin.4 54.78789769 0.145560408 33 886159 39.2 48823 SAMN36690360 SRR25394825 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2498__bin.7 57.20307918 0.378787879 32 1202960 35.06 50965 SAMN36690057 SRR25394910 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2498__bin.5 80.27699799 1.390101892 218 1316465 39.36 7970 SAMN36690057 SRR25394910 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2498__bin.2 60.80246914 0.617283951 59 2213625 45 51282 SAMN36690057 SRR25394910 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_CSIC_2__P2504__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2498__bin.1 58.8 2.2 2509 8219021 38.64 3602 SAMN36690057 SRR25394910 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2246_73323__bin.19 MASTER_WP4_CSIC_1__P2246_73323__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2499__bin.2 60.55304291 0.251091703 141 999843 39.4 8533 SAMN36690058 SRR25394909 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2499__bin.7 58.95061728 0.617283951 57 2199893 44.96 51282 SAMN36690058 SRR25394909 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_CSIC_2__P2504__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2500__bin.7 65.53641251 0 40 1396715 35.07 45625 SAMN36690059 SRR25394908 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2500__bin.12 63.94711305 0.690805434 156 1029784 39.64 8836 SAMN36690059 SRR25394908 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2500__bin.3 50 0 11 702892 45.67 101467 SAMN36690059 SRR25394908 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_CSIC_1__P2249_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2500__bin.10 87.5 0.1 1105 9498343 39.64 11306 SAMN36690059 SRR25394908 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. EBC_024.4 MASTER_WP4_CSIC_2__P2500__bin.10 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces marxianus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2500__bin.6 99.2 0.1 183 10456915 38.73 92299 SAMN36690059 SRR25394908 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2246_73323__bin.19 MASTER_WP4_CSIC_1__P2246_73323__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2501__bin.4 64.10385042 0.710733347 143 994231 39.7 8663 SAMN36690060 SRR25394907 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2501__bin.6 58.33333333 0.617283951 58 2205350 44.92 51282 SAMN36690060 SRR25394907 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_CSIC_2__P2504__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2502__bin.6 74.48275862 1.724137931 234 1788273 34.99 14088 SAMN36690362 SRR25394823 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2502__bin.7 82.90865748 0.849056604 134 2045636 35.56 26725 SAMN36690362 SRR25394823 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2502__bin.10 98.7654321 2.777777778 65 2722053 45.12 58015 SAMN36690362 SRR25394823 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_CSIC_2__P2504__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2502__bin.5 57.75862069 1.724137931 1076 2967706 60.98 2822 SAMN36690362 SRR25394823 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2502__bin.5 MASTER_WP4_CSIC_2__P2502__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E pergaminensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2502__bin.3 96.4 0 512 10377003 38.71 31536 SAMN36690362 SRR25394823 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2246_73323__bin.19 MASTER_WP4_CSIC_1__P2246_73323__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2503__bin.4 50.5015674 0 153 982325 35.37 9273 SAMN36690363 SRR25395142 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2503__bin.10 98.14814815 2.777777778 63 2680349 45.14 58015 SAMN36690363 SRR25395142 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_CSIC_1__P2249_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2504__bin.1 90.55575906 0.68030303 76 4189813 48.11 90741 SAMN36690364 SRR25395141 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811137__bin.9 MacoriG_2019__CS_R36__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia paralvei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2504__bin.2 99.38271605 2.777777778 71 2851984 44.98 56471 SAMN36690364 SRR25395141 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_CSIC_2__P2504__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2504__bin.4 93.6 0 810 10234861 38.72 18235 SAMN36690364 SRR25395141 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2246_73323__bin.19 MASTER_WP4_CSIC_1__P2246_73323__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2505__bin.1 80.13412352 0.145560408 82 1365481 39.07 22136 SAMN36690365 SRR25395140 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2505__bin.4 98.14814815 2.777777778 65 2694363 45.1 58015 SAMN36690365 SRR25395140 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_CSIC_2__P2504__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2508__bin.3 56.89655172 0 87 958162 35.25 18561 SAMN36690061 SRR25394906 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2508__bin.4 64.65517241 0 226 1616274 35.51 9152 SAMN36690061 SRR25394906 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_CSIC_2__P2511__bin.9 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2508__bin.1 97.88359788 0 50 1692070 39.24 45898 SAMN36690061 SRR25394906 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2509__bin.3 51.72413793 0 99 1248996 34.67 23153 SAMN36690062 SRR25394905 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2509__bin.1 99.47089947 0 60 1714561 39.22 43094 SAMN36690062 SRR25394905 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2510__bin.3 55.54924242 0.568181818 88 994401 35.23 18736 SAMN36690063 SRR25395224 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2510__bin.8 93.12169312 0 48 1663771 39.22 45898 SAMN36690063 SRR25395224 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2511__bin.3 73.1168594 0.754716981 98 1364302 35.39 23349 SAMN36690064 SRR25395223 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2511__bin.9 68.67816092 0 233 1625699 35.33 8707 SAMN36690064 SRR25395223 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_CSIC_2__P2511__bin.9 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2511__bin.7 60.31746032 0 38 1169307 39.45 42245 SAMN36690064 SRR25395223 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2512__bin.10 61.9383242 0.377358491 115 1146535 35.35 17889 SAMN36690366 SRR25395139 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2512__bin.11 68.81732169 0.448811257 180 1041249 39.81 7438 SAMN36690366 SRR25395139 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2512__bin.3 58.62068966 0 332 1302841 35.64 4468 SAMN36690366 SRR25395139 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_CSIC_2__P2512__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2512__bin.5 94.5 0.3 748 19709901 49.05 40867 SAMN36690366 SRR25395139 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0052-001_Yarrowia_lipolytica_CBA6003 ODFM-BA-A-0052-001_Yarrowia_lipolytica_CBA6003 Ascomycota;Saccharomycetes;Saccharomycetales;Dipodascaceae;Yarrowia Yarrowia lipolytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2514__bin.5 67.64886771 1.136363636 109 1262752 35.34 20393 SAMN36690368 SRR25395137 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2514__bin.6 64.44167187 0.145560408 157 923320 39.66 7613 SAMN36690368 SRR25395137 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2514__bin.4 74.00731452 0 252 1571515 35.52 8517 SAMN36690368 SRR25395137 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 FontanaF_2023__SRR20746981__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2514__bin.3 100 0 54 1749118 39.2 45898 SAMN36690368 SRR25395137 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2515__bin.4 56.62893082 0 84 1001503 35.39 18954 SAMN36690369 SRR25395136 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2515__bin.3 66.09195402 0 220 1525977 35.4 8549 SAMN36690369 SRR25395136 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_CSIC_2__P2511__bin.9 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2515__bin.2 100 0 51 1716781 39.25 45898 SAMN36690369 SRR25395136 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2518__bin.1 99.33862434 1.075268817 102 1601702 38.01 20111 SAMN36690065 SRR25395222 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2518__bin.6 53.44827586 0 147 862855 36.05 7893 SAMN36690065 SRR25395222 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2519__bin.6 57.47126437 0 84 1107494 34.64 21917 SAMN36690066 SRR25395221 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2519__bin.7 92.41622575 1.058201058 92 1551816 37.93 23979 SAMN36690066 SRR25395221 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2520__bin.3 57.75862069 0 105 1549233 34.95 22990 SAMN36690067 SRR25395220 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2520__bin.5 98.94179894 0 72 1662554 37.79 40804 SAMN36690067 SRR25395220 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2521__bin.7 62.06896552 0 106 1459209 34.83 21917 SAMN36690068 SRR25395219 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2521__bin.2 95.66905615 0.881834215 112 1573638 37.83 18716 SAMN36690068 SRR25395219 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2523__bin.9 56.14035088 0 28 942814 37.94 49723 SAMN36690371 SRR25395134 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2524__bin.9 77.03242098 0.694444444 178 1623757 35.11 14311 SAMN36690372 SRR25395133 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2524__bin.16 94 0.3 553 19677023 49.03 53935 SAMN36690372 SRR25395133 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0052-001_Yarrowia_lipolytica_CBA6003 ODFM-BA-A-0052-001_Yarrowia_lipolytica_CBA6003 Ascomycota;Saccharomycetes;Saccharomycetales;Dipodascaceae;Yarrowia Yarrowia lipolytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2524__bin.3 88.9 0.1 423 8259969 37.8 28798 SAMN36690372 SRR25395133 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2524__bin.3 MASTER_WP4_CSIC_2__P2524__bin.3 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;unknown unknown cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2525__bin.3 56.14035088 0 19 807053 37.97 70312 SAMN36690373 SRR25395131 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2525__bin.7 89.95094783 2.247128822 582 3582691 38.31 8065 SAMN36690373 SRR25395131 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB06-21__bin.6 MASTER_WP4_CSIC_2__P2525__bin.7 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter guillouiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2528__bin.6 99.96586448 0 37 1685652 37.79 85832 SAMN36690069 SRR25395218 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2528__bin.10 55.20282187 0 50 1028160 39.54 33659 SAMN36690069 SRR25395218 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2529__bin.8 94.17989418 0 30 1567105 37.78 96166 SAMN36690070 SRR25395217 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2530__bin.1 97.35449735 0 32 1625433 37.77 96166 SAMN36690071 SRR25395216 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2531__bin.9 53.63113898 0 112 1388741 34.86 17416 SAMN36690072 SRR25395215 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2531__bin.5 97.35449735 0 33 1614726 37.8 96166 SAMN36690072 SRR25395215 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2531__bin.3 56.26102293 0 47 1020568 39.55 29048 SAMN36690072 SRR25395215 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2532__bin.11 95.11862093 0.529100529 49 1522646 37.89 49723 SAMN36690374 SRR25395130 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2532__bin.3 66.66666667 0 34 1021934 39.08 40378 SAMN36690374 SRR25395130 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2533__bin.2 54.53914141 0 81 1288729 34.81 23207 SAMN36690375 SRR25395129 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2533__bin.1 87.97576378 0 39 1334313 37.96 64143 SAMN36690375 SRR25395129 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2533__bin.3 57.48421232 0.176366843 42 1134804 39.39 35623 SAMN36690375 SRR25395129 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2534__bin.6 91.76338397 0 145 1374093 37.9 11782 SAMN36690376 SRR25395128 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2534__bin.11 79.24560505 0.176366843 52 1488016 39.27 37502 SAMN36690376 SRR25395128 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2535__bin.6 95.06741765 0 69 1519311 37.83 40933 SAMN36690377 SRR25395127 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2535__bin.9 69.14149172 0.176366843 40 1206765 39.47 37502 SAMN36690377 SRR25395127 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2538__bin.1 98.69307548 0.145560408 47 1722136 39.03 60321 SAMN36690077 SRR25395209 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2539__bin.1 64.37409025 0.145560408 27 1055796 39.62 59153 SAMN36690078 SRR25395208 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2539__bin.6 74.09090909 0 136 1628545 35.44 18470 SAMN36690078 SRR25395208 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2540__bin.3 65.24745269 0.145560408 28 1081774 39.55 59154 SAMN36690079 SRR25395207 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2540__bin.1 84.042356 3.80952381 178 2048096 35.31 18849 SAMN36690079 SRR25395207 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2541__bin.4 63.87502599 0.145560408 27 1055026 39.62 59154 SAMN36690080 SRR25395206 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2544__bin.5 72.08201922 0.408805031 107 1715672 34.78 30718 SAMN36690085 SRR25395200 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2544__bin.12 99.47089947 4.012345679 184 2303276 37.92 36915 SAMN36690085 SRR25395200 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2544__bin.17 62.38244514 1.724137931 257 1133488 35.64 5158 SAMN36690085 SRR25395200 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_CSIC_2__P2544__bin.17 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2544__bin.8 98.0859375 0.3125 40 2270196 42.61 104754 SAMN36690085 SRR25395200 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2544__bin.15 85.91422106 0 182 1271933 36.44 9727 SAMN36690085 SRR25395200 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2544__bin.13 92.35081845 4.140151515 525 2079421 44.08 4493 SAMN36690085 SRR25395200 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_CSIC_2__P2544__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2544__bin.11 63.94984326 2.586206897 269 2730467 44.07 15208 SAMN36690085 SRR25395200 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FranciosaI_2021__SRR12227952__bin.4 WalshAM_2020__ERS3466758__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraplantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2544__bin.18 97.2826087 1.539855072 221 2065245 38.73 17118 SAMN36690085 SRR25395200 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008632615.1_ASM863261v1_genomic GCF_008632615.1_ASM863261v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus nenjiangensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2544__bin.4 90.7 0.2 1348 13564841 38.68 14212 SAMN36690085 SRR25395200 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCA_003243815.1_ASM324381v1_genomic GCA_003243815.1_ASM324381v1_genomic Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Spathaspora Candida sake cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2545__bin.7 93.10947636 0.220959596 150 2393227 34.77 30154 SAMN36690086 SRR25395199 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2545__bin.13 100 3.571428571 181 2359534 38.18 38615 SAMN36690086 SRR25395199 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2545__bin.20 85.32627861 1.867924528 392 1662365 35.59 5075 SAMN36690086 SRR25395199 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2545__bin.28 55.48589342 1.724137931 445 1586533 45.22 4035 SAMN36690086 SRR25395199 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_CSIC_2__P2545__bin.28 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2545__bin.22 83.125 0.33203125 23 866873 42.21 68738 SAMN36690086 SRR25395199 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2545__bin.11 55.17241379 0 33 946662 46.59 59390 SAMN36690086 SRR25395199 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2545__bin.1 66.67711599 4.310344828 220 2295808 44.2 15616 SAMN36690086 SRR25395199 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FranciosaI_2021__SRR12227952__bin.4 WalshAM_2020__ERS3466758__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraplantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2545__bin.12 98.36956522 1.630434783 224 2124048 38.77 15741 SAMN36690086 SRR25395199 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008632615.1_ASM863261v1_genomic GCF_008632615.1_ASM863261v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus nenjiangensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2545__bin.24 79.1 1.3 2330 12718463 38.69 6678 SAMN36690086 SRR25395199 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCA_003243815.1_ASM324381v1_genomic GCA_003243815.1_ASM324381v1_genomic Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Spathaspora Candida sake cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2545__bin.25 54.7 4.9 4372 15483128 40.84 3927 SAMN36690086 SRR25395199 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2545__bin.25 MASTER_WP4_CSIC_2__P2545__bin.25 Ascomycota;Saccharomycetes;Saccharomycetales;Dipodascaceae;Geotrichum Geotrichum candidum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2548__bin.15 78.49056604 0.377358491 34 1703473 34.92 132306 SAMN36690386 SRR25395117 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2548__bin.21 80.30741069 2.578616352 459 1754058 35.6 4558 SAMN36690386 SRR25395117 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_CSIC_2__P2548__bin.21 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2548__bin.7 57.05329154 0 397 1431940 45.4 4142 SAMN36690386 SRR25395117 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_CSIC_2__P2504__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2548__bin.25 99.0625 0.3515625 52 2287467 42.53 73178 SAMN36690386 SRR25395117 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2548__bin.22 63.79310345 1.724137931 141 1228127 46.92 12114 SAMN36690386 SRR25395117 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2548__bin.9 94.18290043 0.108225108 184 1660196 36.57 12641 SAMN36690386 SRR25395117 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2548__bin.14 63.93416928 2.586206897 264 2672125 44.05 15208 SAMN36690386 SRR25395117 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FranciosaI_2021__SRR12227952__bin.4 WalshAM_2020__ERS3466758__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraplantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2548__bin.13 84.7826087 0.611413043 170 1837516 38.84 19746 SAMN36690386 SRR25395117 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008632615.1_ASM863261v1_genomic GCF_008632615.1_ASM863261v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus nenjiangensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2548__bin.4 50.7 0.4 2192 6998776 41.65 3419 SAMN36690386 SRR25395117 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK065-1-L-08h-05B1_S62__bin.1 MASTER_WP4_CSIC_2__P2548__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia fermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2548__bin.11 99.2 0 176 13958173 38.74 135460 SAMN36690386 SRR25395117 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCA_003243815.1_ASM324381v1_genomic GCA_003243815.1_ASM324381v1_genomic Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Spathaspora Candida sake cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2548__bin.19 75.3 0.7 3607 12416124 35.97 3855 SAMN36690386 SRR25395117 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_CSIC_2__P2548__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2548__bin.1 52.3 2.3 312 6411439 51.72 29125 SAMN36690386 SRR25395117 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2561__bin.3 MASTER_WP4_UNINA_2__V-30__bin.11 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Kurtzmaniella Candida zeylanoides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2549__bin.6 75.3307799 1.927083333 379 1571119 46.68 4690 SAMN36690387 SRR25395116 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_CSIC_2__P2549__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2549__bin.8 78.20754717 0.283018868 31 1697830 34.91 121295 SAMN36690387 SRR25395116 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2549__bin.13 95.23809524 1.398337113 57 1597079 38.05 61826 SAMN36690387 SRR25395116 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2549__bin.11 81.37802246 1.446540881 426 1451995 35.62 3888 SAMN36690387 SRR25395116 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_CSIC_2__P2549__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2549__bin.17 86.87346117 4.223400298 592 2792890 40.18 5555 SAMN36690387 SRR25395116 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 MASTER_WP4_CSIC_2__P2549__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2549__bin.14 98.75 2.157118056 59 2243951 42.57 65271 SAMN36690387 SRR25395116 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2549__bin.7 92.08333333 0.520833333 138 2321123 42.46 29067 SAMN36690387 SRR25395116 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_61__bin.3 DeFilippisF_xxxx__DF_61__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus dabitei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2549__bin.23 63.79310345 1.724137931 242 1352594 46.63 6940 SAMN36690387 SRR25395116 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2549__bin.19 91.25189745 2.245179063 274 1874151 36.37 9673 SAMN36690387 SRR25395116 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2549__bin.16 72.85705267 3.604910714 497 1639489 44.17 3581 SAMN36690387 SRR25395116 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_CSIC_2__P2549__bin.16 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2549__bin.10 62.21003135 2.586206897 256 2674996 44.04 15810 SAMN36690387 SRR25395116 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FranciosaI_2021__SRR12227952__bin.4 WalshAM_2020__ERS3466758__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraplantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2549__bin.12 55.17241379 0 87 837955 38.56 15626 SAMN36690387 SRR25395116 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008632615.1_ASM863261v1_genomic GCF_008632615.1_ASM863261v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus nenjiangensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2549__bin.18 61.7 0.2 2488 8720071 41.67 3833 SAMN36690387 SRR25395116 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK065-1-L-08h-05B1_S62__bin.1 MASTER_WP4_CSIC_2__P2549__bin.18 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia fermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2549__bin.20 81.5 0.5 2140 11154203 36.1 6701 SAMN36690387 SRR25395116 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_CSIC_2__P2549__bin.20 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2549__bin.4 98.3 0 188 13805084 38.71 148396 SAMN36690387 SRR25395116 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCA_003243815.1_ASM324381v1_genomic GCA_003243815.1_ASM324381v1_genomic Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Spathaspora Candida sake cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2550__bin.16 79.31527693 0.660377358 32 1728078 34.87 132306 SAMN36690388 SRR25395115 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2550__bin.9 73.58934169 0.862068966 436 1851837 35.41 5182 SAMN36690388 SRR25395115 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_CSIC_2__P2550__bin.9 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2550__bin.5 99.0625 0.3515625 44 2281926 42.57 74797 SAMN36690388 SRR25395115 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2550__bin.6 91.88091613 0.870720189 290 1763467 36.24 8266 SAMN36690388 SRR25395115 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2550__bin.18 69.12225705 4.310344828 276 2779555 44.04 15208 SAMN36690388 SRR25395115 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FranciosaI_2021__SRR12227952__bin.4 WalshAM_2020__ERS3466758__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraplantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2550__bin.11 72.9 0.3 2837 10509096 36.08 4148 SAMN36690388 SRR25395115 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_CSIC_2__P2550__bin.11 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2550__bin.15 99 0.1 277 13972395 38.74 88129 SAMN36690388 SRR25395115 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCA_003243815.1_ASM324381v1_genomic GCA_003243815.1_ASM324381v1_genomic Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Spathaspora Candida sake cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2551__bin.17 51.13636364 0 25 1349345 34.85 142845 SAMN36690389 SRR25395375 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2551__bin.16 66.69278997 0 438 1671099 35.65 4374 SAMN36690389 SRR25395375 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_CSIC_2__P2551__bin.16 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2551__bin.9 98.73046875 0.3515625 51 2268060 42.56 67402 SAMN36690389 SRR25395375 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2551__bin.19 66.37931034 0.862068966 213 1580860 46.6 10596 SAMN36690389 SRR25395375 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2551__bin.15 95.34632035 2.272727273 227 1775611 36.44 11266 SAMN36690389 SRR25395375 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2551__bin.10 91.07102273 1.9609375 497 2034710 44.03 4599 SAMN36690389 SRR25395375 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_CSIC_2__P2551__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2551__bin.25 68.76175549 2.586206897 268 2695019 44.06 15616 SAMN36690389 SRR25395375 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FranciosaI_2021__SRR12227952__bin.4 WalshAM_2020__ERS3466758__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraplantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2551__bin.14 80.97826087 2.989130435 205 1804481 38.96 16425 SAMN36690389 SRR25395375 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008632615.1_ASM863261v1_genomic GCF_008632615.1_ASM863261v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus nenjiangensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2551__bin.12 58.5 0.9 2470 8036465 41.8 3474 SAMN36690389 SRR25395375 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK065-1-L-08h-05B1_S62__bin.1 MASTER_WP4_CSIC_2__P2551__bin.12 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia fermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2551__bin.1 98.7 0 189 13843988 38.72 121524 SAMN36690389 SRR25395375 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCA_003243815.1_ASM324381v1_genomic GCA_003243815.1_ASM324381v1_genomic Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Spathaspora Candida sake cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2551__bin.21 91.1 0.2 1508 11767719 36.22 11398 SAMN36690389 SRR25395375 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 SternesPR_2017__Control1_A_shotgun__bin.2 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2554__bin.5 93.02511161 0.056818182 215 2128042 46.36 14835 SAMN36690093 SRR25395451 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2554__bin.16 78.70906878 0.34591195 248 2057352 35.16 12257 SAMN36690093 SRR25395451 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__U-2-10__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2554__bin.6 99.07407407 2.777777778 83 2950129 44.8 55522 SAMN36690093 SRR25395451 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2554__bin.14 77.52808989 0.140449438 31 1119074 43.9 45297 SAMN36690093 SRR25395451 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0094-002_Leuconostoc_lactis_WIKIM21 MASTER_WP4_CSIC_2__P2559__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2554__bin.10 96.2 0.4 5310 38000228 32.73 10014 SAMN36690093 SRR25395451 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2638__bin.9 MASTER_WP4_CSIC_2__P2554__bin.10 Mucoromycota;Mucoromycetes;Mucorales;Mucoraceae;Mucor Mucor racemosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2554__bin.11 64.3 2.8 2311 8470399 38.62 4185 SAMN36690093 SRR25395451 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2246_73323__bin.19 MASTER_WP4_CSIC_1__P2246_73323__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2555__bin.11 90.41666667 2.855902778 329 2227960 46.1 9176 SAMN36690094 SRR25395450 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2555__bin.7 58.49056604 0 72 1219675 35.09 30574 SAMN36690094 SRR25395450 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2555__bin.12 67.81609195 0 387 2138355 35.12 7506 SAMN36690094 SRR25395450 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__U-2-10__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2555__bin.4 99.07407407 2.777777778 45 3144889 44.61 155457 SAMN36690094 SRR25395450 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2555__bin.1 99.70037453 0.842696629 60 1959196 38.67 90827 SAMN36690094 SRR25395450 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc citreum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2555__bin.9 51.31086142 0 20 787533 43.81 45297 SAMN36690094 SRR25395450 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0094-002_Leuconostoc_lactis_WIKIM21 MASTER_WP4_CSIC_2__P2559__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2556__bin.7 61.49425287 0 376 2146257 35.19 7963 SAMN36690095 SRR25395449 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__U-2-10__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2556__bin.20 96.60493827 2.777777778 49 3087997 44.59 117495 SAMN36690095 SRR25395449 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2556__bin.2 99.32432432 0 92 3228618 68.92 51118 SAMN36690095 SRR25395449 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_2__P2570__bin.32 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2556__bin.14 99.70037453 0.842696629 34 1757785 39.03 101448 SAMN36690095 SRR25395449 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc citreum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2556__bin.12 65.51724138 0 42 932258 43.82 36675 SAMN36690095 SRR25395449 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0094-002_Leuconostoc_lactis_WIKIM21 MASTER_WP4_CSIC_2__P2559__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2556__bin.19 96.1 0 1117 12511000 38.7 17253 SAMN36690095 SRR25395449 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2574__bin.24 MASTER_WP4_CSIC_2__P2574__bin.24 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Candida Candida parapsilosis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2556__bin.21 99.4 0 149 12710310 43.51 135994 SAMN36690095 SRR25395449 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2556__bin.21 MASTER_WP4_CSIC_2__P2556__bin.21 Ascomycota;Saccharomycetes;Saccharomycetales;Metschnikowiaceae;Clavispora Candida intermedia cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2557__bin.8 93.76171875 0.572916667 203 2117229 46.32 16848 SAMN36690096 SRR25395448 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2557__bin.1 55.28301887 0 50 1134337 35.31 39362 SAMN36690096 SRR25395448 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2557__bin.4 99.07407407 2.777777778 39 3075795 44.68 117494 SAMN36690096 SRR25395448 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2557__bin.2 90.4494382 0.983146067 42 1412891 43.78 61995 SAMN36690096 SRR25395448 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0094-002_Leuconostoc_lactis_WIKIM21 MASTER_WP4_CSIC_2__P2559__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2557__bin.10 98.12031835 1.029962547 82 1841401 38.92 63046 SAMN36690096 SRR25395448 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc citreum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2558__bin.49 78.4496124 1.21124031 426 2421788 63.26 7235 SAMN36690394 SRR25395369 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_CSIC_1__P2237_73323__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2558__bin.20 99.61013645 1.998050682 405 4163359 70.24 16317 SAMN36690394 SRR25395369 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2558__bin.5 89.3616208 0.611620795 148 2921901 66.83 34099 SAMN36690394 SRR25395369 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2558__bin.5 MASTER_WP4_CSIC_2__P2558__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Arthrobacter_H Arthrobacter H sp030452125 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2558__bin.35 79.1813639 4.698216735 358 2237459 44.23 7235 SAMN36690394 SRR25395369 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FranciosaI_2021__SRR12227952__bin.4 WalshAM_2020__ERS3466758__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraplantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2558__bin.1 51.09397944 0.660792952 144 1265348 55.14 11551 SAMN36690394 SRR25395369 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2558__bin.36 76.23873874 1.201201201 570 2417973 67.14 5130 SAMN36690394 SRR25395369 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_CSIC_2__P2558__bin.36 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2558__bin.8 78.75 0.573476703 123 1818881 32.49 33647 SAMN36690394 SRR25395369 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2558__bin.22 67.24137931 0 294 2331553 54.25 10704 SAMN36690394 SRR25395369 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811293__bin.2 MASTER_WP4_CSIC_2__P2558__bin.22 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella citrativorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2558__bin.17 94.02173913 0.543478261 115 1349443 31.07 18731 SAMN36690394 SRR25395369 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2558__bin.17 MASTER_WP4_CSIC_2__P2558__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2558__bin.26 72.60485651 0.662251656 204 1521250 36.73 10062 SAMN36690394 SRR25395369 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_2__bin.27 DeFilippisF_xxxx__DS_2__bin.27 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus koreensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2558__bin.46 69.35506772 1.017365662 185 1659377 55.56 11543 SAMN36690394 SRR25395369 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_CSIC_2__P2558__bin.46 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2558__bin.24 67.24137931 3.448275862 370 2939499 66.06 11146 SAMN36690394 SRR25395369 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 MASTER_WP4_CSIC_2__P2558__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2558__bin.48 79.31034483 0 80 1709815 34.14 43168 SAMN36690394 SRR25395369 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2558__bin.48 MASTER_WP4_CSIC_2__P2558__bin.48 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2558__bin.44 95.4 0.1 185 26424676 49.01 290113 SAMN36690394 SRR25395369 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2558__bin.45 89.5 0.4 1510 30374697 58 40657 SAMN36690394 SRR25395369 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2559__bin.5 53.01886792 0 38 1088974 35.25 62820 SAMN36690395 SRR25395368 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2559__bin.8 88.03282014 1.079328757 255 2466777 46.56 13489 SAMN36690395 SRR25395368 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_357__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2559__bin.10 73.7199582 1.724137931 264 2148651 35.06 12109 SAMN36690395 SRR25395368 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__U-2-10__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2559__bin.3 99.07407407 2.777777778 36 3027724 44.75 155457 SAMN36690395 SRR25395368 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2559__bin.6 96.06770833 2.083333333 174 2270718 43.95 17649 SAMN36690395 SRR25395368 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 LandisEA_2021__SRS5653155__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2559__bin.12 97.23782772 0.702247191 56 1481438 43.75 42328 SAMN36690395 SRR25395368 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0094-002_Leuconostoc_lactis_WIKIM21 MASTER_WP4_CSIC_2__P2559__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2559__bin.4 96.1423221 0.280898876 24 1689750 39.01 101448 SAMN36690395 SRR25395368 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc citreum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2559__bin.1 76.73828125 0 26 1067741 45.71 60949 SAMN36690395 SRR25395368 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2560__bin.15 75.66037736 0.251572327 33 1617019 35.25 90234 SAMN36690396 SRR25395367 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2560__bin.13 81.37878788 0.740740741 451 1927215 32.75 5015 SAMN36690396 SRR25395367 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_CSIC_2__P2560__bin.13 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2560__bin.6 86.7248062 2.868217054 437 2817010 63.43 8488 SAMN36690396 SRR25395367 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 WolfeBE_2014__491_Bayley__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2560__bin.7 96.58869396 3.216374269 823 4272543 70.23 7160 SAMN36690396 SRR25395367 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__771_Tarentaise__bin.3 MASTER_WP4_CSIC_2__P2560__bin.7 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium tyrofermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2560__bin.16 89.93445693 0.280898876 32 1428120 43.73 68352 SAMN36690396 SRR25395367 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0094-002_Leuconostoc_lactis_WIKIM21 MASTER_WP4_CSIC_2__P2559__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2560__bin.10 99.55992509 4.213483146 53 1819848 38.95 76194 SAMN36690396 SRR25395367 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc citreum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2560__bin.1 95.3 0.2 1130 32796981 48.43 50932 SAMN36690396 SRR25395367 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2560__bin.1 MASTER_WP4_CSIC_2__P2560__bin.1 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium sp SPG F1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2560__bin.9 97.5 0.1 333 11641175 36.26 77693 SAMN36690396 SRR25395367 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2561__bin.1 97.83950617 2.777777778 42 3118893 44.52 139630 SAMN36690397 SRR25395366 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2561__bin.6 95.00451445 1.517076868 213 1894426 38.92 14358 SAMN36690397 SRR25395366 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc citreum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2561__bin.10 73.59550562 0.421348315 28 1086997 43.68 61995 SAMN36690397 SRR25395366 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0094-002_Leuconostoc_lactis_WIKIM21 MASTER_WP4_CSIC_2__P2559__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2561__bin.3 60.9 0 1948 7682624 55.75 4543 SAMN36690397 SRR25395366 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2561__bin.3 MASTER_WP4_CSIC_2__P2561__bin.3 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Kurtzmaniella Candida zeylanoides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2564__bin.12 63.17633604 0.145560408 31 1073812 39.37 59154 SAMN36690097 SRR25395447 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2564__bin.13 69.62382445 0 299 1630819 35.41 6852 SAMN36690097 SRR25395447 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2564__bin.10 94.44444444 3.492330715 407 2279406 45.33 6927 SAMN36690097 SRR25395447 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FontanaF_2023__SRR20746957__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2564__bin.14 99.3 1.5 262 10639594 38.73 88225 SAMN36690097 SRR25395447 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2246_73323__bin.19 MASTER_WP4_CSIC_1__P2246_73323__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2564__bin.5 97 0.1 861 12382920 38.68 22223 SAMN36690097 SRR25395447 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2574__bin.24 MASTER_WP4_CSIC_2__P2574__bin.24 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Candida Candida parapsilosis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2565__bin.7 50.81504702 0 173 1013366 35.24 8210 SAMN36690098 SRR25395446 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2565__bin.17 85.86787319 1.918278228 128 1718351 39.11 27701 SAMN36690098 SRR25395446 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2565__bin.2 96.9263285 1.105072464 235 2544880 46.78 16541 SAMN36690098 SRR25395446 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2565__bin.16 65.47510098 1.352201258 118 1467251 35.83 22166 SAMN36690098 SRR25395446 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2565__bin.14 97.54372428 4.737186682 369 2275967 45.23 7492 SAMN36690098 SRR25395446 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 AlvarezOrdonezA_xxxx__Q06-27__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2565__bin.6 95.44140625 0 41 2307044 43.88 91237 SAMN36690098 SRR25395446 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2565__bin.3 87.77173913 1.902173913 215 2333419 43.34 15579 SAMN36690098 SRR25395446 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 MASTER_WP4_CSIC_2__P2567__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2565__bin.9 98.8 0.1 250 10613621 38.72 77856 SAMN36690098 SRR25395446 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2246_73323__bin.19 MASTER_WP4_CSIC_1__P2246_73323__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2566__bin.1 89.6875 2.777777778 243 1649546 46.19 8876 SAMN36690099 SRR25395445 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2566__bin.13 55.94330401 0.631313131 171 1070095 35.21 7692 SAMN36690099 SRR25395445 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2566__bin.17 82.39222716 1.166353075 302 1449500 39.17 6239 SAMN36690099 SRR25395445 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 MASTER_WP4_CSIC_2__P2566__bin.17 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2566__bin.14 81.32183908 0 204 2256360 35.43 17003 SAMN36690099 SRR25395445 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2566__bin.7 91.64702581 3.878600823 406 2339025 45.27 7066 SAMN36690099 SRR25395445 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FontanaF_2023__SRR20746957__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2566__bin.11 98.9 0.1 259 10473447 38.72 91749 SAMN36690099 SRR25395445 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2246_73323__bin.19 MASTER_WP4_CSIC_1__P2246_73323__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2566__bin.18 81 0.9 2613 12087471 36.15 5580 SAMN36690099 SRR25395445 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_CSIC_2__P2566__bin.18 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2566__bin.4 89.1 0.1 1682 11942268 38.7 10032 SAMN36690099 SRR25395445 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2574__bin.24 MASTER_WP4_CSIC_2__P2574__bin.24 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Candida Candida parapsilosis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2567__bin.3 94.02173913 3.985507246 111 1884223 41.86 28391 SAMN36690100 SRR25395444 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2567__bin.6 68.50410409 0.262528592 125 1212510 39.72 13246 SAMN36690100 SRR25395444 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2567__bin.15 96.42663043 1.925465839 267 2575137 46.67 13667 SAMN36690100 SRR25395444 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2567__bin.8 89.09722222 4.197063225 362 2130872 45.32 7157 SAMN36690100 SRR25395444 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 AlvarezOrdonezA_xxxx__Q06-27__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2567__bin.14 89.5625 0 40 2264975 43.84 123804 SAMN36690100 SRR25395444 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2567__bin.7 91.30434783 2.010869565 175 2434364 43.27 20168 SAMN36690100 SRR25395444 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 MASTER_WP4_CSIC_2__P2567__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2567__bin.10 91.5 0 971 10415419 38.73 16112 SAMN36690100 SRR25395444 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2246_73323__bin.19 MASTER_WP4_CSIC_1__P2246_73323__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2568__bin.6 93.54166667 0.729166667 103 2161437 46.23 27858 SAMN36690398 SRR25395365 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2568__bin.12 97.18502739 1.918238994 126 2297866 35.01 33040 SAMN36690398 SRR25395365 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2568__bin.3 79.31034483 0 241 2138911 45.14 10751 SAMN36690398 SRR25395365 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FontanaF_2023__SRR20746957__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2568__bin.23 85.28265107 1.423001949 661 2751088 70.54 5070 SAMN36690398 SRR25395365 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2568__bin.18 99.77477477 0 69 3063776 69.14 66685 SAMN36690398 SRR25395365 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_2__P2570__bin.32 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2569__bin.26 95.27529762 0.3125 111 2122457 46.28 26564 SAMN36690399 SRR25395364 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2569__bin.16 50.44224613 0.377358491 79 944912 35.37 19817 SAMN36690399 SRR25395364 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2569__bin.19 74.73876698 1.724137931 347 1992867 35.23 7479 SAMN36690399 SRR25395364 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2569__bin.20 85.63767637 3.497942387 223 1922049 45.39 9601 SAMN36690399 SRR25395364 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FontanaF_2023__SRR20746957__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2569__bin.14 86.35477583 2.397660819 632 2769766 70.6 5276 SAMN36690399 SRR25395364 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2569__bin.11 99.21171171 0 109 3078875 69.11 35989 SAMN36690399 SRR25395364 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_2__P2570__bin.32 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2569__bin.5 62.93103448 3.448275862 513 3253915 62.93 7634 SAMN36690399 SRR25395364 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__575_CabotClothbound__bin.6 MASTER_WP4_CSIC_2__P2569__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2570__bin.16 95.356056 0.566037736 164 2210520 34.94 28328 SAMN36690400 SRR25395363 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2570__bin.24 89.70760234 1.578947368 718 3113901 70.48 5331 SAMN36690400 SRR25395363 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2570__bin.32 99.77477477 0 75 3119972 69.06 83061 SAMN36690400 SRR25395363 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_2__P2570__bin.32 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2570__bin.38 76.5625 0.9375 75 1456381 45.84 36736 SAMN36690400 SRR25395363 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2570__bin.17 90.50440513 3.085408475 256 2691338 55.95 14906 SAMN36690400 SRR25395363 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 CM_UNINA_FFOOD__FFOOD_319__bin.13 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2570__bin.3 98.64341085 3.197674419 198 3158397 68.72 29501 SAMN36690400 SRR25395363 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_CSIC_2__P2570__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2570__bin.13 92.49512671 1.549707602 340 3059515 70.43 14130 SAMN36690400 SRR25395363 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.13 MASTER_WP4_CSIC_2__P2570__bin.13 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2571__bin.8 55.92090257 0.852272727 216 1179717 34.73 7859 SAMN36690401 SRR25395362 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2571__bin.4 76.68583891 3.333333333 247 1969136 35.07 12616 SAMN36690401 SRR25395362 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2571__bin.6 97.60752688 1.759259259 339 2805253 32.84 13256 SAMN36690401 SRR25395362 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2571__bin.2 79.59782535 1.270833333 400 1968572 43.72 6066 SAMN36690401 SRR25395362 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2571__bin.9 99.41520468 1.072124756 388 3851143 70.43 15096 SAMN36690401 SRR25395362 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2571__bin.1 95.63953488 1.027131783 590 4217017 62.44 9932 SAMN36690401 SRR25395362 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_619 MASTER_WP4_CSIC_2__P2571__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp900169365 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2574__bin.1 96.04166667 0 143 2188248 46.32 25528 SAMN36690105 SRR25395438 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_CSIC_2__P2574__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2574__bin.5 91.77658201 0.597484277 218 2266986 35.26 18602 SAMN36690105 SRR25395438 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2574__bin.18 98.28767123 1.98630137 111 4488570 38.04 71997 SAMN36690105 SRR25395438 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB06-21__bin.6 MASTER_WP4_CSIC_2__P2574__bin.18 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter guillouiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2574__bin.14 99.3 0.8 160 10534099 38.71 188576 SAMN36690105 SRR25395438 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2246_73323__bin.19 MASTER_WP4_CSIC_1__P2246_73323__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2574__bin.23 91.2 1 785 10143283 38.37 19898 SAMN36690105 SRR25395438 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2597__bin.1 MASTER_WP4_CSIC_2__P2597__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia kudriavzevii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2574__bin.24 97.6 0.1 509 12465107 38.66 42422 SAMN36690105 SRR25395438 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2574__bin.24 MASTER_WP4_CSIC_2__P2574__bin.24 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Candida Candida parapsilosis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2574__bin.32 95.3 0.3 1169 13859412 32.85 19378 SAMN36690105 SRR25395438 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2574__bin.32 MASTER_WP4_CSIC_2__P2574__bin.32 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Candida Candida tropicalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2574__bin.33 95.7 0.5 80 11087724 38.75 235632 SAMN36690105 SRR25395438 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2596__bin.7 MASTER_WP4_CSIC_2__P2596__bin.7 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Yamadazyma Candida atlantica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2575__bin.5 63.37596174 0.145560408 32 1066882 39.3 66685 SAMN36690106 SRR25395437 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2575__bin.6 90.7775553 0.300343249 167 2224154 46.82 22798 SAMN36690106 SRR25395437 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2575__bin.16 62.02194357 0.862068966 126 1287036 35.6 18740 SAMN36690106 SRR25395437 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2575__bin.10 86.90776064 1.145833333 450 2103491 43.92 5515 SAMN36690106 SRR25395437 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2576__bin.10 67.93545795 0.189393939 167 1355585 35.12 15404 SAMN36690107 SRR25395436 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2576__bin.13 91.27546616 0.786163522 203 2166200 35.45 17529 SAMN36690107 SRR25395436 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2576__bin.5 55.03472222 2.469135802 217 1755359 45.39 10224 SAMN36690107 SRR25395436 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_CSIC_2__P2576__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2576__bin.11 63.5 1.1 1889 10979375 36.06 7402 SAMN36690107 SRR25395436 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2576__bin.11 MASTER_WP4_CSIC_2__P2576__bin.11 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces unknown cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2576__bin.12 95.2 0.1 934 12117560 38.71 18701 SAMN36690107 SRR25395436 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2574__bin.24 MASTER_WP4_CSIC_2__P2574__bin.24 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Candida Candida parapsilosis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2576__bin.2 83.9 1.7 1342 9939890 38.63 9671 SAMN36690107 SRR25395436 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2246_73323__bin.19 MASTER_WP4_CSIC_1__P2246_73323__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2576__bin.4 78.7 0.5 1161 10033743 38.57 11651 SAMN36690107 SRR25395436 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2596__bin.7 MASTER_WP4_CSIC_2__P2596__bin.7 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Yamadazyma Candida atlantica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2577__bin.6 75.03687822 1.23655914 162 1679185 35.36 18628 SAMN36690108 SRR25395435 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2577__bin.2 68.49065599 0.258152174 209 1636232 46.83 11368 SAMN36690108 SRR25395435 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 AlvarezOrdonezA_xxxx__Q02-30__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2577__bin.16 97.94791667 0.833333333 126 2390852 43.8 30191 SAMN36690108 SRR25395435 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2577__bin.13 56.89655172 0 983 3080405 37.99 3435 SAMN36690108 SRR25395435 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB06-21__bin.6 MASTER_WP4_CSIC_2__P2574__bin.18 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter guillouiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2577__bin.1 99.3 0.1 175 10472632 38.72 113958 SAMN36690108 SRR25395435 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2246_73323__bin.19 MASTER_WP4_CSIC_1__P2246_73323__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2578__bin.20 87.3294347 2.066276803 547 3115475 70.67 7542 SAMN36690406 SRR25395356 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2578__bin.18 99.0990991 1.501501502 184 2958695 69.31 32724 SAMN36690406 SRR25395356 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_2__P2570__bin.32 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2578__bin.28 89.5711501 2.631578947 316 3297597 70.61 17378 SAMN36690406 SRR25395356 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.13 MASTER_WP4_CSIC_2__P2570__bin.13 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2578__bin.15 56.24869383 1.724137931 499 2978176 63.92 6966 SAMN36690406 SRR25395356 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_90__bin.4 MASTER_WP4_CSIC_2__P2578__bin.15 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sandarakinum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2578__bin.17 79.10658307 1.724137931 792 4700373 70.47 7846 SAMN36690406 SRR25395356 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__771_Tarentaise__bin.3 MASTER_WP4_CSIC_2__P2578__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium tyrofermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2578__bin.9 89.42307692 0.091575092 17 2682630 42.86 265431 SAMN36690406 SRR25395356 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2578__bin.9 MASTER_WP4_CSIC_2__P2578__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2578__bin.12 91 0.1 817 11275356 36.19 20428 SAMN36690406 SRR25395356 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2579__bin.8 94.55400782 3.156565657 293 2406044 34.79 15196 SAMN36690407 SRR25395355 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2579__bin.3 56.22270742 0.145560408 20 904474 39.87 90930 SAMN36690407 SRR25395355 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2579__bin.7 96.37681159 1.21058988 202 2341200 46.76 17210 SAMN36690407 SRR25395355 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2579__bin.4 91.36477987 1.601744776 296 2473556 35.06 14087 SAMN36690407 SRR25395355 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2579__bin.1 99.41520468 1.754385965 252 3871584 70.44 24557 SAMN36690407 SRR25395355 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2579__bin.9 97.97297297 0.225225225 158 3012618 69.18 33137 SAMN36690407 SRR25395355 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_2__P2570__bin.32 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2579__bin.21 94.10856153 1.009012539 388 3362588 54.85 11363 SAMN36690407 SRR25395355 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2591__bin.6 MASTER_WP4_CSIC_2__P2591__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2580__bin.7 94.83430799 3.099415205 636 3666122 70.42 7953 SAMN36690408 SRR25395354 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2580__bin.2 99.32432432 0.675675676 215 3018815 69.26 28595 SAMN36690408 SRR25395354 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_2__P2570__bin.32 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2580__bin.5 100 1.081389452 48 3954035 54.24 144174 SAMN36690408 SRR25395354 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2591__bin.6 MASTER_WP4_CSIC_2__P2591__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2580__bin.16 81.9 1 2531 12368075 36.14 6032 SAMN36690408 SRR25395354 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2581__bin.19 81.71875 1.510416667 360 1782363 46.16 5457 SAMN36690409 SRR25395353 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_CSIC_2__P2581__bin.19 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2581__bin.13 90.73146235 1.830808081 295 2134702 34.64 13705 SAMN36690409 SRR25395353 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2581__bin.8 78.77145309 0.190217391 210 1760728 46.94 12324 SAMN36690409 SRR25395353 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2581__bin.17 93.65120161 1.729559748 253 2428841 35.05 18710 SAMN36690409 SRR25395353 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2581__bin.10 98.78125 2.589285714 213 2503463 43.69 15625 SAMN36690409 SRR25395353 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2581__bin.6 98.44054581 2.046783626 463 3811291 70.46 11910 SAMN36690409 SRR25395353 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2581__bin.4 94.3 0.1 699 25728086 49.09 72783 SAMN36690409 SRR25395353 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2581__bin.20 97.6 0.1 372 10432107 38.71 45256 SAMN36690409 SRR25395353 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2246_73323__bin.19 MASTER_WP4_CSIC_1__P2246_73323__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2584__bin.25 50.12539185 0 176 976475 35.17 7359 SAMN36690109 SRR25395434 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2584__bin.3 79.7702225 0.363901019 46 1410407 39.13 59154 SAMN36690109 SRR25395434 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2584__bin.28 93.57852896 0.923913043 194 2441486 46.77 18450 SAMN36690109 SRR25395434 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_2__P2584__bin.28 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2584__bin.15 70.297805640000007 0 358 1688534 35.35 6288 SAMN36690109 SRR25395434 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_CSIC_2__P2586__bin.31 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2584__bin.10 87.5 0.872093023 372 2765805 63.33 10399 SAMN36690109 SRR25395434 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_CSIC_2__P2586__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2584__bin.24 95.24456522 3.126460963 246 2404059 43.22 13206 SAMN36690109 SRR25395434 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 MASTER_WP4_CSIC_2__P2584__bin.24 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2584__bin.35 99.2202729 0.584795322 265 4076659 70.21 24727 SAMN36690109 SRR25395434 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 MASTER_WP4_CSIC_2__P2584__bin.35 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2584__bin.47 61.36363636 4.310344828 250 2813169 43.87 17288 SAMN36690109 SRR25395434 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FranciosaI_2021__SRR12227952__bin.4 WalshAM_2020__ERS3466758__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraplantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2584__bin.30 91.19676946 3.000489476 264 2418554 55.66 11951 SAMN36690109 SRR25395434 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2584__bin.23 93.09309309 1.9004719 408 2432473 67.91 8495 SAMN36690109 SRR25395434 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 FalardeauJ_2023__SRR20811223__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2584__bin.5 99.22161172 0.274725275 72 2923985 47.01 62266 SAMN36690109 SRR25395434 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2584__bin.5 MASTER_WP4_CSIC_2__P2584__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter celer cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2584__bin.8 77.74641577 2.12962963 248 2183760 33.13 13635 SAMN36690109 SRR25395434 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2584__bin.1 58.62068966 0 487 2153219 41.71 4926 SAMN36690109 SRR25395434 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-26__bin.7 MASTER_WP4_CSIC_2__P2584__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter johnsonii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2584__bin.41 62.06896552 0 72 1193198 32.2 50043 SAMN36690109 SRR25395434 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2584__bin.52 75.4782197 0 106 1019922 46.16 12747 SAMN36690109 SRR25395434 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2584__bin.46 55.66953809 1.936026936 743 2103631 68.22 2960 SAMN36690109 SRR25395434 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-28__bin.25 MASTER_WP4_CSIC_2__P2584__bin.46 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium sp900163665 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2584__bin.6 96.56965342 1.300172106 104 3969634 54.17 63039 SAMN36690109 SRR25395434 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2591__bin.6 MASTER_WP4_CSIC_2__P2591__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2584__bin.34 64.31884375 2.236238532 734 2201819 69.69 3195 SAMN36690109 SRR25395434 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2588__bin.45 MASTER_WP4_CSIC_2__P2584__bin.34 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Citricoccus Citricoccus nitrophenolicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2584__bin.4 98.21428571 1.150412088 15 5066143 52.72 494322 SAMN36690109 SRR25395434 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2584__bin.4 MASTER_WP4_CSIC_2__P2584__bin.4 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Serratia Serratia grimesii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2584__bin.20 93.3 0.1 803 10282573 38.71 18194 SAMN36690109 SRR25395434 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2246_73323__bin.19 MASTER_WP4_CSIC_1__P2246_73323__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2585__bin.15 76.8515625 3.333333333 261 1330429 46.49 6131 SAMN36690110 SRR25395433 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_CSIC_2__P2631__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2585__bin.2 54.31034483 0 237 1201250 34.85 6734 SAMN36690110 SRR25395433 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2585__bin.3 91.61779996 0.815138282 95 1637041 39.07 23602 SAMN36690110 SRR25395433 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2585__bin.13 88.78881988 0.262681159 246 2420930 46.71 12959 SAMN36690110 SRR25395433 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_2__P2584__bin.28 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2585__bin.8 70.297805640000007 0 342 1434453 35.56 4876 SAMN36690110 SRR25395433 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2585__bin.6 59.48275862 2.586206897 448 2061386 45.19 5234 SAMN36690110 SRR25395433 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_CSIC_2__P2585__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2585__bin.7 87.03833567 3.278401122 383 2172423 43.19 7134 SAMN36690110 SRR25395433 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 MASTER_WP4_CSIC_2__P2584__bin.24 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2585__bin.4 65.5015674 3.448275862 338 3209000 43.92 15645 SAMN36690110 SRR25395433 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FranciosaI_2021__SRR12227952__bin.4 WalshAM_2020__ERS3466758__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraplantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2585__bin.9 64.96865204 3.448275862 624 2317822 41.84 4247 SAMN36690110 SRR25395433 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-26__bin.7 MASTER_WP4_CSIC_2__P2585__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter johnsonii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2585__bin.14 91.19336192 2.799036281 760 4597687 58.25 8264 SAMN36690110 SRR25395433 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2587__bin.9 MASTER_WP4_CSIC_2__P2587__bin.9 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella terrigena cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2586__bin.1 60.70183136 0.126262626 255 1170395 35.34 5808 SAMN36690111 SRR25395432 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2586__bin.10 81.378665 0.145560408 41 1413819 39.24 62841 SAMN36690111 SRR25395432 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2586__bin.31 76.3322884 0 399 1929587 35.24 6322 SAMN36690111 SRR25395432 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_CSIC_2__P2586__bin.31 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2586__bin.14 81.21863799 1.111111111 151 2299856 32.62 68150 SAMN36690111 SRR25395432 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2586__bin.9 96.7469546 2.073643411 455 4196086 63.24 14492 SAMN36690111 SRR25395432 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_CSIC_2__P2586__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2586__bin.18 100 0.877192982 347 4151634 70.11 19718 SAMN36690111 SRR25395432 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 MASTER_WP4_CSIC_2__P2584__bin.35 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2586__bin.30 69.81191223 2.586206897 269 2910952 43.89 16666 SAMN36690111 SRR25395432 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FranciosaI_2021__SRR12227952__bin.4 WalshAM_2020__ERS3466758__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraplantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2586__bin.11 97.56756757 1.115401115 239 2939027 67.54 21301 SAMN36690111 SRR25395432 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 FalardeauJ_2023__SRR20811223__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2586__bin.3 99.08424908 0.641025641 129 2878223 47.11 32743 SAMN36690111 SRR25395432 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2584__bin.5 MASTER_WP4_CSIC_2__P2584__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter celer cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2586__bin.23 53.26018809 0 216 1720493 33.27 11519 SAMN36690111 SRR25395432 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2586__bin.5 58.62068966 0 22 795906 45.98 53982 SAMN36690111 SRR25395432 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2586__bin.19 58.05422648 0 873 2514649 57.96 2917 SAMN36690111 SRR25395432 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2587__bin.9 MASTER_WP4_CSIC_2__P2586__bin.19 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella terrigena cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2586__bin.22 80.3928425 4.313419592 841 3908312 49.22 5620 SAMN36690111 SRR25395432 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2587__bin.8 MASTER_WP4_CSIC_2__P2587__bin.8 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia protea cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2586__bin.27 54.7 0.2 1416 8007160 56 6843 SAMN36690111 SRR25395432 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. C-R03.bin.3 MASTER_WP4_CSIC_2__P2586__bin.27 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Scheffersomyces Scheffersomyces stipitis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2587__bin.11 69.43573668 0 308 1521267 35.13 6457 SAMN36690112 SRR25395431 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2587__bin.18 93.15866084 0.291120815 82 1637148 39 29650 SAMN36690112 SRR25395431 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2587__bin.4 88.08876812 0 90 2349556 46.72 40646 SAMN36690112 SRR25395431 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_2__P2584__bin.28 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2587__bin.10 62.06896552 1.724137931 376 1425914 35.53 4459 SAMN36690112 SRR25395431 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2587__bin.14 89.93577075 2.762681159 277 2317796 43.26 10939 SAMN36690112 SRR25395431 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 MASTER_WP4_CSIC_2__P2584__bin.24 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2587__bin.13 81.83283452 2.469135802 252 2718632 44.13 15148 SAMN36690112 SRR25395431 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FranciosaI_2021__SRR12227952__bin.4 WalshAM_2020__ERS3466758__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraplantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2587__bin.1 63.79310345 3.448275862 580 2196765 41.44 4085 SAMN36690112 SRR25395431 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-26__bin.7 MASTER_WP4_CSIC_2__P2587__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter johnsonii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2587__bin.15 64.66666667 3.203125 206 1094967 45.95 6008 SAMN36690112 SRR25395431 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_CSIC_2__P2631__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2587__bin.9 99.18806232 0.755739796 152 5359157 57.77 66913 SAMN36690112 SRR25395431 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2587__bin.9 MASTER_WP4_CSIC_2__P2587__bin.9 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella terrigena cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2587__bin.8 90.2548026 1.361499611 145 4172046 49.3 48656 SAMN36690112 SRR25395431 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2587__bin.8 MASTER_WP4_CSIC_2__P2587__bin.8 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia protea cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2588__bin.2 89.89583333 1.677083333 215 1869227 46.39 10893 SAMN36690410 SRR25395352 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2588__bin.21 98.91304348 1.086956522 119 1767332 42.19 22089 SAMN36690410 SRR25395352 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2588__bin.18 72.85109156 0.034435262 229 1449384 35.15 7710 SAMN36690410 SRR25395352 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2588__bin.13 58.62068966 0 108 1047551 35.67 14343 SAMN36690410 SRR25395352 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2588__bin.28 68.54651163 0 377 2136357 63.53 6659 SAMN36690410 SRR25395352 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_CSIC_2__P2586__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2588__bin.9 82.0662768 1.578947368 681 2563724 70.56 4335 SAMN36690410 SRR25395352 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 MASTER_WP4_CSIC_2__P2584__bin.35 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2588__bin.27 81.06995885 3.395061728 209 2765715 43.85 19803 SAMN36690410 SRR25395352 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FranciosaI_2021__SRR12227952__bin.4 WalshAM_2020__ERS3466758__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraplantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2588__bin.1 95.81497797 0.440528634 45 2676409 55.63 80427 SAMN36690410 SRR25395352 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2588__bin.19 93.16816817 0.645645646 323 2476417 67.94 11979 SAMN36690410 SRR25395352 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 FalardeauJ_2023__SRR20811223__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2588__bin.20 60.26645768 1.724137931 469 2289997 63.73 6001 SAMN36690410 SRR25395352 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_90__bin.4 MASTER_WP4_CSIC_2__P2588__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sandarakinum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2588__bin.29 91.94023569 3.481240981 340 2949992 67.34 13979 SAMN36690410 SRR25395352 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-BG__bin.13 MASTER_WP4_CSIC_2__P2588__bin.29 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2588__bin.7 50 0 13 3186134 53.82 378163 SAMN36690410 SRR25395352 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2591__bin.6 MASTER_WP4_CSIC_2__P2591__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2588__bin.45 97.63379205 0.114678899 73 3173936 69.28 67775 SAMN36690410 SRR25395352 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2588__bin.45 MASTER_WP4_CSIC_2__P2588__bin.45 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Citricoccus Citricoccus nitrophenolicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2588__bin.23 67.03761755 1.724137931 1216 4862682 70.51 4596 SAMN36690410 SRR25395352 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2588__bin.23 MASTER_WP4_CSIC_2__P2588__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium fresconis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2588__bin.26 94.7 0.3 1180 32837660 48.47 49426 SAMN36690410 SRR25395352 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__O-30__bin.13 MASTER_WP4_UNINA_2__O-30__bin.13 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium camemberti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2588__bin.22 91.5 0.3 1292 28502073 59.29 34821 SAMN36690410 SRR25395352 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2588__bin.22 MASTER_WP4_CSIC_2__P2588__bin.22 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis unknown cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2589__bin.9 57.71159875 0 332 1376320 35.17 4835 SAMN36690411 SRR25395351 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2589__bin.2 79.05940251 0.60095654 67 1281854 39.6 32401 SAMN36690411 SRR25395351 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2589__bin.10 85.45016125 0.18115942 382 2188330 46.83 7101 SAMN36690411 SRR25395351 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_2__P2584__bin.28 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2589__bin.11 68.57366771 0 292 1751850 35.09 9106 SAMN36690411 SRR25395351 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2589__bin.12 51.88087774 3.448275862 444 2229113 45.39 6166 SAMN36690411 SRR25395351 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_CSIC_2__P2585__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2589__bin.5 75.7923264 2.198422582 650 2138541 41.64 3537 SAMN36690411 SRR25395351 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-26__bin.7 MASTER_WP4_CSIC_2__P2589__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter johnsonii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2590__bin.12 84.42782738 4.962121212 301 1476685 46.59 5777 SAMN36690412 SRR25395350 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_CSIC_2__P2590__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2590__bin.9 70.297805640000007 0 371 1606067 34.92 5115 SAMN36690412 SRR25395350 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2590__bin.11 70.74495737 0.334319388 43 1189638 39.66 38501 SAMN36690412 SRR25395350 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2590__bin.4 62.30952789 0.236552397 522 1563541 46.82 3138 SAMN36690412 SRR25395350 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_2__P2590__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2590__bin.7 69.43573668 3.448275862 343 2020284 35.27 8248 SAMN36690412 SRR25395350 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2590__bin.1 67.24137931 0 26 1277852 67.1 106290 SAMN36690412 SRR25395350 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2591__bin.4 60.9453405 1.136363636 192 1279843 35.04 10958 SAMN36690413 SRR25395348 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2591__bin.20 69.40961338 0 459 2276273 35.23 6254 SAMN36690413 SRR25395348 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_CSIC_2__P2591__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2591__bin.19 92.68410853 3.100775194 500 3438134 63.2 9937 SAMN36690413 SRR25395348 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_CSIC_2__P2586__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2591__bin.21 98.24561404 1.364522417 468 3857609 70.39 13494 SAMN36690413 SRR25395348 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 MASTER_WP4_CSIC_2__P2584__bin.35 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2591__bin.16 94.66966967 2.612612613 413 2626402 67.9 9320 SAMN36690413 SRR25395348 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 FalardeauJ_2023__SRR20811223__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2591__bin.6 99.51508621 0.779665314 129 3966026 54.3 47274 SAMN36690413 SRR25395348 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2591__bin.6 MASTER_WP4_CSIC_2__P2591__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2591__bin.14 68.14839085 0.848623853 723 2344756 69.54 3726 SAMN36690413 SRR25395348 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2588__bin.45 MASTER_WP4_CSIC_2__P2588__bin.45 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Citricoccus Citricoccus nitrophenolicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2591__bin.10 77.5 0.4 4663 27191191 59.25 7416 SAMN36690413 SRR25395348 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2588__bin.22 MASTER_WP4_CSIC_2__P2588__bin.22 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis unknown cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2591__bin.8 61.5 0 1235 8511893 55.85 8746 SAMN36690413 SRR25395348 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. C-R03.bin.3 MASTER_WP4_CSIC_2__P2591__bin.8 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Scheffersomyces Scheffersomyces stipitis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2594__bin.12 70.18167985 0.566037736 189 1472537 35.16 10549 SAMN36690113 SRR25395262 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2594__bin.7 58.44709572 0.145560408 93 943440 39.7 16760 SAMN36690113 SRR25395262 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2594__bin.5 93.09393386 1.257861635 137 1970591 40.13 22528 SAMN36690113 SRR25395262 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 WalshL_xxxx__F1__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2594__bin.8 92.8937049 1.257861635 167 2038100 35.5 19818 SAMN36690113 SRR25395262 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2594__bin.3 95.67901235 3.652263374 278 2722803 44.96 14292 SAMN36690113 SRR25395262 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2594__bin.11 59.0797491 1.944444444 677 1988392 32.61 3030 SAMN36690113 SRR25395262 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_CSIC_2__P2594__bin.11 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2594__bin.15 68.63812106 0.506477847 672 2687183 53.58 4317 SAMN36690113 SRR25395262 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2596__bin.6 MASTER_WP4_CSIC_2__P2596__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Kluyvera Kluyvera intermedia cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2594__bin.13 85.6 0.2 1812 11355036 36.16 8480 SAMN36690113 SRR25395262 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2594__bin.9 81.4 0.2 2066 11529976 38.73 7200 SAMN36690113 SRR25395262 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2574__bin.24 MASTER_WP4_CSIC_2__P2574__bin.24 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Candida Candida parapsilosis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2596__bin.5 59.43573668 0 143 1178863 35.23 12297 SAMN36690115 SRR25395260 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2596__bin.8 53.01691273 0.942503639 96 868630 39.71 11986 SAMN36690115 SRR25395260 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2596__bin.2 83.9245283 0.880503145 65 1777944 40.28 45700 SAMN36690115 SRR25395260 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 WalshL_xxxx__F1__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2596__bin.12 92.21014493 0 81 2506247 46.53 47830 SAMN36690115 SRR25395260 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2596__bin.18 62.02194357 0 108 1146232 35.64 17040 SAMN36690115 SRR25395260 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2596__bin.15 90.64796443 3.669410151 306 2327821 45.32 9374 SAMN36690115 SRR25395260 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2596__bin.6 97.68548044 0.756448413 196 4350039 52.77 33535 SAMN36690115 SRR25395260 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2596__bin.6 MASTER_WP4_CSIC_2__P2596__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Kluyvera Kluyvera intermedia cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2596__bin.7 94.9 0 371 11172806 38.74 46269 SAMN36690115 SRR25395260 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2596__bin.7 MASTER_WP4_CSIC_2__P2596__bin.7 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Yamadazyma Candida atlantica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2596__bin.13 96.7 0.1 787 12232305 38.69 23604 SAMN36690115 SRR25395260 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2574__bin.24 MASTER_WP4_CSIC_2__P2574__bin.24 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Candida Candida parapsilosis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2597__bin.7 60.61128527 0 188 1224652 35.2 11137 SAMN36690116 SRR25395259 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2597__bin.8 96.98113208 1.194968553 94 2073192 40.18 38971 SAMN36690116 SRR25395259 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 WalshL_xxxx__F1__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2597__bin.20 96.37123746 1.495212215 235 2702790 46.44 16423 SAMN36690116 SRR25395259 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2597__bin.12 53.44827586 0.862068966 453 1731289 45.38 4234 SAMN36690116 SRR25395259 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_CSIC_2__P2597__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2597__bin.16 79.40972222 0.3125 28 783469 42.17 52535 SAMN36690116 SRR25395259 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2597__bin.9 96.21527778 1.40625 106 2074821 41.94 38355 SAMN36690116 SRR25395259 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2597__bin.30 84.2405914 0.462228101 233 3783533 52.66 26063 SAMN36690116 SRR25395259 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2596__bin.6 MASTER_WP4_CSIC_2__P2596__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Kluyvera Kluyvera intermedia cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2597__bin.18 92.96744792 2 80 2292266 43.91 44772 SAMN36690116 SRR25395259 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2597__bin.24 60.34482759 0 240 2397779 43.84 15343 SAMN36690116 SRR25395259 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FranciosaI_2021__SRR12227952__bin.4 WalshAM_2020__ERS3466758__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraplantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2597__bin.19 56.89655172 0 36 818904 36.95 60546 SAMN36690116 SRR25395259 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_S8 MAG_357 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2597__bin.1 93.6 0.3 703 10507751 38.32 22588 SAMN36690116 SRR25395259 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2597__bin.1 MASTER_WP4_CSIC_2__P2597__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia kudriavzevii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2598__bin.24 55.29924934 0.600343053 127 1067174 35.28 12231 SAMN36690414 SRR25395004 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2598__bin.30 61.56026894 0.855167394 97 986720 39.78 12887 SAMN36690414 SRR25395004 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2598__bin.3 82.47126437 1.724137931 253 1962740 35.4 10890 SAMN36690414 SRR25395004 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2598__bin.32 91.2037037 1.734273956 297 2540563 45.25 10629 SAMN36690414 SRR25395004 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2598__bin.19 51.69573643 0.484496124 279 1706099 63.47 7560 SAMN36690414 SRR25395004 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_CSIC_2__P2599__bin.33 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2598__bin.12 98.83040936 2.046783626 400 3706028 70.54 14733 SAMN36690414 SRR25395004 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2598__bin.14 97.52252252 1.238738739 311 3065240 69.16 14401 SAMN36690414 SRR25395004 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_2__P2570__bin.32 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2598__bin.10 91 0.5 1716 32904700 48.5 30863 SAMN36690414 SRR25395004 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__O-30__bin.13 MASTER_WP4_UNINA_2__O-30__bin.13 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium camemberti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2598__bin.18 86.5 0.5 1822 24319490 49.32 17984 SAMN36690414 SRR25395004 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2598__bin.18 MASTER_WP4_CSIC_2__P2598__bin.18 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Aspergillus Aspergillus amstelodami cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2598__bin.26 96.1 0.1 839 12185320 38.69 22074 SAMN36690414 SRR25395004 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2574__bin.24 MASTER_WP4_CSIC_2__P2574__bin.24 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Candida Candida parapsilosis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2598__bin.31 51.7 1.5 2330 8847122 35.89 4284 SAMN36690414 SRR25395004 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_CSIC_2__P2598__bin.31 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2598__bin.8 88.6 0.3 1626 28550935 58.66 33692 SAMN36690414 SRR25395004 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2598__bin.8 MASTER_WP4_CSIC_2__P2598__bin.8 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis unknown cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2599__bin.21 92.73958333 1.71875 184 2193323 46.11 17750 SAMN36690415 SRR25395003 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 FontanaF_2023__SRR20746964__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2599__bin.34 64.65695882 1 517 2439990 49.7 5202 SAMN36690415 SRR25395003 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811283__bin.7 FalardeauJ_2023__SRR20811283__bin.7 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia alvei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2599__bin.31 96.875 0.78125 129 3044880 39.84 42413 SAMN36690415 SRR25395003 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 DeFilippisF_xxxx__DF_79__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2599__bin.20 94.02173913 0.543478261 85 1611236 42.21 34619 SAMN36690415 SRR25395003 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_2__P2599__bin.20 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2599__bin.23 53.08176101 0.503144654 60 1118248 40.63 37501 SAMN36690415 SRR25395003 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 WalshL_xxxx__F1__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2599__bin.29 92.16973244 1.861413043 306 2525429 46.58 11589 SAMN36690415 SRR25395003 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2599__bin.5 68.36990596 0 171 1554206 35.43 15023 SAMN36690415 SRR25395003 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2599__bin.41 60.46740493 1.154891304 435 1854387 46.68 4669 SAMN36690415 SRR25395003 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 MASTER_WP4_CSIC_2__P2599__bin.41 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2599__bin.53 67.71083854 0.462962963 297 1306573 45.26 4649 SAMN36690415 SRR25395003 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2599__bin.15 97.77777778 2.993510373 329 3019028 32.68 15608 SAMN36690415 SRR25395003 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2599__bin.33 85.75581395 1.279069767 464 3376995 63 10295 SAMN36690415 SRR25395003 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_CSIC_2__P2599__bin.33 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2599__bin.43 93.64315025 0.9375 277 3140744 40 16013 SAMN36690415 SRR25395003 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 LeechJ_2020__ERS3967690__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2599__bin.50 81.28914141 1.893939394 356 1443222 64.49 4599 SAMN36690415 SRR25395003 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_296__bin.3 MASTER_WP4_CSIC_2__P2599__bin.50 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2599__bin.42 90.72916667 0.3125 42 1144812 42.44 40849 SAMN36690415 SRR25395003 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2599__bin.32 88.15625 3.854166667 102 2025863 41.98 39090 SAMN36690415 SRR25395003 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2599__bin.10 91.5625 0.208333333 129 2589577 42.34 34775 SAMN36690415 SRR25395003 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_61__bin.3 DeFilippisF_xxxx__DF_61__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus dabitei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2599__bin.7 70.44270833 0.186011905 63 2883762 52.97 72629 SAMN36690415 SRR25395003 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2596__bin.6 MASTER_WP4_CSIC_2__P2596__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Kluyvera Kluyvera intermedia cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2599__bin.11 80 0.5 1508 10046626 30.99 9327 SAMN36690415 SRR25395003 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2599__bin.11 MASTER_WP4_CSIC_2__P2599__bin.11 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Candida cabralensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2599__bin.16 76 1.4 1599 9490894 41.97 6951 SAMN36690415 SRR25395003 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK065-1-L-08h-05B1_S62__bin.1 MASTER_WP4_CSIC_2__P2599__bin.16 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia fermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2599__bin.22 74.1 1.6 1577 8772007 39.21 6541 SAMN36690415 SRR25395003 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. EBC_024.4 MASTER_WP4_CSIC_2__P2599__bin.22 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces marxianus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2599__bin.26 61.8 0.5 1161 6992935 50.24 6891 SAMN36690415 SRR25395003 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MilaniC_2019__SRS3591582__bin.17 MASTER_WP4_CSIC_2__P2599__bin.26 Ascomycota;Saccharomycetes;Saccharomycetales;Trichomonascaceae;Wickerhamiella Wickerhamiella pararugosa cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2599__bin.30 96.5 0.5 868 12426051 38.66 21958 SAMN36690415 SRR25395003 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2574__bin.24 MASTER_WP4_CSIC_2__P2574__bin.24 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Candida Candida parapsilosis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2599__bin.35 88.4 0.5 1030 10101652 38.21 13525 SAMN36690415 SRR25395003 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2597__bin.1 MASTER_WP4_CSIC_2__P2597__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia kudriavzevii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2599__bin.51 97.3 0.1 189 10348035 38.71 114386 SAMN36690415 SRR25395003 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2246_73323__bin.19 MASTER_WP4_CSIC_1__P2246_73323__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2599__bin.8 81.4 2.9 2257 12002935 36.26 6712 SAMN36690415 SRR25395003 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_CSIC_2__P2599__bin.8 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2600__bin.8 94.52386771 0.852272727 174 2105349 35.01 20609 SAMN36690416 SRR25395002 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2600__bin.14 65.50114369 0.906633396 76 1023704 39.78 17826 SAMN36690416 SRR25395002 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2600__bin.10 82.47500217 1.446540881 337 1701862 40.64 6031 SAMN36690416 SRR25395002 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 WalshL_xxxx__F1__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2600__bin.12 84.86534458 0.960144928 403 2365459 46.5 7059 SAMN36690416 SRR25395002 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_2__P2600__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2600__bin.4 70.1985371 1.724137931 817 2858965 34.71 3988 SAMN36690416 SRR25395002 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2600__bin.20 95.32260435 3.29218107 291 2483561 45.25 11669 SAMN36690416 SRR25395002 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2600__bin.2 92.38925803 4.76744186 488 3806570 63.04 10865 SAMN36690416 SRR25395002 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_CSIC_2__P2599__bin.33 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2600__bin.7 65.67398119 1.724137931 134 1423785 32.34 20334 SAMN36690416 SRR25395002 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2600__bin.15 59.98432602 4.310344828 761 2528335 61.92 3718 SAMN36690416 SRR25395002 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2600__bin.15 MASTER_WP4_CSIC_2__P2600__bin.15 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2600__bin.9 94.8 0.1 441 26580195 49.01 109190 SAMN36690416 SRR25395002 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2600__bin.1 92.3 0.2 1125 11784461 36.22 15773 SAMN36690416 SRR25395002 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2601__bin.22 96.75 1.5625 211 3357533 39.8 29786 SAMN36690417 SRR25395001 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 DeFilippisF_xxxx__DF_79__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2601__bin.26 60.29780564 0 194 1212203 35.17 8955 SAMN36690417 SRR25395001 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2601__bin.33 60.31446541 0.880503145 42 1420616 40.04 55698 SAMN36690417 SRR25395001 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 WalshL_xxxx__F1__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2601__bin.21 90.93088071 0.788043478 189 2584828 46.51 21043 SAMN36690417 SRR25395001 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2601__bin.18 72.21003135 0 141 1385481 35.49 16385 SAMN36690417 SRR25395001 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2601__bin.12 79.03572765 1.800411523 347 1813052 45.21 5709 SAMN36690417 SRR25395001 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2601__bin.30 79.81451613 3.522727273 689 2613126 33.01 4484 SAMN36690417 SRR25395001 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_CSIC_2__P2601__bin.30 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2601__bin.16 94.96969697 1.742424242 133 1797300 64.06 23062 SAMN36690417 SRR25395001 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_296__bin.3 CM_UNINA_FFOOD__FFOOD_296__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2601__bin.1 96.97916667 0.9375 64 2196878 42.61 58132 SAMN36690417 SRR25395001 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2601__bin.11 89.89583333 1.770833333 104 2231393 42.45 40378 SAMN36690417 SRR25395001 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_61__bin.3 DeFilippisF_xxxx__DF_61__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus dabitei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2601__bin.25 50.97222222 0.186011905 48 2095495 53.17 65618 SAMN36690417 SRR25395001 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2596__bin.6 MASTER_WP4_CSIC_2__P2596__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Kluyvera Kluyvera intermedia cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2604__bin.21 85.39528348 0.378787879 167 1657511 35.31 15545 SAMN36690117 SRR25395258 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2604__bin.15 73.62068966 0 101 1255733 35.76 21704 SAMN36690117 SRR25395258 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2604__bin.16 58.62068966 0 137 1230070 46.69 11465 SAMN36690117 SRR25395258 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2604__bin.5 81.875 0 29 1167838 45.96 57234 SAMN36690117 SRR25395258 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_CSIC_2__P2604__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2604__bin.13 55.2 4.2 3016 10410725 35.83 3770 SAMN36690117 SRR25395258 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_CSIC_2__P2604__bin.13 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2604__bin.12 95.2 0 956 12187752 38.7 18702 SAMN36690117 SRR25395258 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2574__bin.24 MASTER_WP4_CSIC_2__P2574__bin.24 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Candida Candida parapsilosis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2605__bin.6 61.20689655 0 158 1291764 34.86 13984 SAMN36690118 SRR25395257 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2605__bin.12 62.32064878 0 31 1150025 39.08 52466 SAMN36690118 SRR25395257 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2605__bin.3 88.23717949 0.640096618 322 2016207 47.03 7958 SAMN36690118 SRR25395257 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2605__bin.15 84.43573668 0 162 1972913 35.59 21440 SAMN36690118 SRR25395257 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2605__bin.5 91.4375 1.145833333 414 2325699 43.71 6597 SAMN36690118 SRR25395257 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_CSIC_2__P2605__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2605__bin.13 50 0 15 511251 45.76 45895 SAMN36690118 SRR25395257 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_CSIC_2__P2604__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2606__bin.8 74.98985595 0.377358491 151 1379767 35.38 15262 SAMN36690119 SRR25395256 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2606__bin.10 68.72530672 0.145560408 33 1249048 39.36 49400 SAMN36690119 SRR25395256 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2606__bin.4 71.03448276 0 91 1273996 35.76 22785 SAMN36690119 SRR25395256 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2606__bin.1 70.0634058 0.317028986 138 1697431 46.74 18443 SAMN36690119 SRR25395256 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2606__bin.5 80 1.25 45 1286798 45.83 52874 SAMN36690119 SRR25395256 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_CSIC_2__P2604__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2606__bin.6 66.3 1.5 3260 11118193 35.97 3730 SAMN36690119 SRR25395256 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_CSIC_2__P2606__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2607__bin.15 79.36634629 1.560309129 401 1802904 47.04 5322 SAMN36690120 SRR25395255 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_2__P2607__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2607__bin.3 63.27586207 0 108 1427836 35.52 21388 SAMN36690120 SRR25395255 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2607__bin.17 97.6461039 0.324675325 109 1753097 36.49 25287 SAMN36690120 SRR25395255 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2607__bin.4 90.69062838 2.262896825 451 1902561 43.86 4785 SAMN36690120 SRR25395255 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_CSIC_2__P2607__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2608__bin.6 79.31081355 0.125786164 156 1605764 35.3 16701 SAMN36690418 SRR25395000 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2608__bin.37 77.51767519 0.497331393 178 1294764 39.29 9033 SAMN36690418 SRR25395000 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 MASTER_WP4_CSIC_2__P2608__bin.37 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2608__bin.45 63.40125392 0 100 1266077 35.73 21387 SAMN36690418 SRR25395000 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2608__bin.33 53.32364341 0.726744186 374 1618294 63.41 4985 SAMN36690418 SRR25395000 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_TEAGASC_1__TGS14-22__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2608__bin.25 92.39766082 1.364522417 661 3140367 70.52 5905 SAMN36690418 SRR25395000 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2608__bin.7 97.32734153 0.662251656 30 2515076 65.36 150540 SAMN36690418 SRR25395000 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2608__bin.7 MASTER_WP4_CSIC_2__P2608__bin.7 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2608__bin.29 55.17241379 0 290 1264487 32.16 5234 SAMN36690418 SRR25395000 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_CSIC_2__P2608__bin.29 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2608__bin.1 81.32292652 0 6 1321021 64.73 357335 SAMN36690418 SRR25395000 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2610__bin.21 MASTER_WP4_CSIC_2__P2610__bin.21 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia sp000710345 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2609__bin.10 78.94326328 0.315656566 180 1597780 35.24 14711 SAMN36690419 SRR25394999 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2609__bin.11 83.02661676 0.145560408 35 1437509 39.08 62786 SAMN36690419 SRR25394999 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2609__bin.15 89.95169082 1.943979933 361 2206974 46.9 7545 SAMN36690419 SRR25394999 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2609__bin.8 78.40125392 0 130 1627914 35.66 21387 SAMN36690419 SRR25394999 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2609__bin.4 63.64544034 0 307 1229713 36.55 4598 SAMN36690419 SRR25394999 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 MASTER_WP4_CSIC_2__P2609__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2609__bin.14 91.61904762 3.302083333 411 2095387 43.91 6125 SAMN36690419 SRR25394999 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_CSIC_2__P2609__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2609__bin.12 61.875 0 34 910064 45.63 57233 SAMN36690419 SRR25394999 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_CSIC_2__P2604__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2610__bin.18 58.68495784 0.625 263 1501753 46.58 6599 SAMN36690420 SRR25394998 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_CSIC_2__P2610__bin.18 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2610__bin.13 61.26171637 0.754716981 114 1172259 35.43 15262 SAMN36690420 SRR25394998 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2610__bin.25 81.88396756 0.58224163 82 1425867 39.24 24260 SAMN36690420 SRR25394998 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2610__bin.17 94.16713118 0.404589372 203 2387308 46.84 15276 SAMN36690420 SRR25394998 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2610__bin.26 79.26332288 0 145 1918723 35.57 21994 SAMN36690420 SRR25394998 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2610__bin.19 70.9772979 0.290697674 415 2771689 63.27 8393 SAMN36690420 SRR25394998 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_TEAGASC_1__TGS14-22__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2610__bin.1 100 1.812865497 393 3768800 70.47 14382 SAMN36690420 SRR25394998 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2610__bin.16 87.92042042 4.466966967 792 2775766 69.11 3866 SAMN36690420 SRR25394998 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_2__P2610__bin.16 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2610__bin.21 93.37748344 1.655629139 264 2758398 65.03 15641 SAMN36690420 SRR25394998 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2610__bin.21 MASTER_WP4_CSIC_2__P2610__bin.21 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia sp000710345 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2611__bin.7 75.06092216 0.27173913 291 1350894 42.14 5131 SAMN36690421 SRR25394997 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_2__P2611__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2611__bin.15 74.05660377 0 153 1481432 35.4 14740 SAMN36690421 SRR25394997 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2611__bin.9 75.92180785 0.094339623 127 1575500 35.7 21145 SAMN36690421 SRR25394997 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2611__bin.16 90.31707702 1.860119048 311 2332059 42.47 10155 SAMN36690421 SRR25394997 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2611__bin.11 53.44827586 1.724137931 249 1164154 46.82 5195 SAMN36690421 SRR25394997 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_2__P2611__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2611__bin.2 97.6461039 0.324675325 114 1797836 36.47 26158 SAMN36690421 SRR25394997 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2611__bin.12 83.61908144 3.423611111 488 1850102 43.98 4205 SAMN36690421 SRR25394997 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_CSIC_2__P2611__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2611__bin.13 58.62068966 1.724137931 107 985962 45.63 31441 SAMN36690421 SRR25394997 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_CSIC_2__P2604__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2611__bin.14 75.05188378 0.574712644 377 1904571 44.03 6340 SAMN36690421 SRR25394997 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2603__bin.2 MASTER_WP4_CSIC_2__P2603__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Moraxella_A Moraxella A sp902506215 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2614__bin.32 61.82720058 0.820707071 221 1242207 35.29 7696 SAMN36690121 SRR25395254 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__O-23.1__bin.12 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2614__bin.41 67.89968652 0 183 1652956 35.71 14249 SAMN36690121 SRR25395254 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2614__bin.47 94.23225309 3.689006467 375 2386306 45.17 7681 SAMN36690121 SRR25395254 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FontanaF_2023__SRR20746964__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2614__bin.7 95.91666667 1.5625 135 2403869 41.69 29899 SAMN36690121 SRR25395254 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2614__bin.46 63.04086509 4.232804233 428 1342527 39.34 3370 SAMN36690121 SRR25395254 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MASTER_WP4_CSIC_2__P2614__bin.46 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2614__bin.28 93.51835317 3.604437229 354 2367582 43.82 8290 SAMN36690121 SRR25395254 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2614__bin.34 58.30591631 0.833333333 379 1291581 58.29 3731 SAMN36690121 SRR25395254 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_290__bin.1 MASTER_WP4_CSIC_2__P2614__bin.34 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia crudilactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2614__bin.22 91.04856512 2.378085491 220 2256246 39.73 16429 SAMN36690121 SRR25395254 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001885995.1_ASM188599v1_genomic MASTER_WP4_CSIC_2__P2618__bin.5 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_G Enterococcus G italicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2614__bin.9 99.33920705 0.220264317 36 2882954 55.51 174534 SAMN36690121 SRR25395254 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2614__bin.25 66.08333333 1.111111111 173 1877924 33.3 15999 SAMN36690121 SRR25395254 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2614__bin.11 86.20474407 3.214731586 109 3369526 39.98 57455 SAMN36690121 SRR25395254 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0149-001_Enterococcus_malodoratus_DSM_20681 MASTER_WP4_CSIC_2__P2614__bin.11 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_A Enterococcus A malodoratus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2614__bin.35 68.96551724 3.448275862 501 2637113 41.4 6347 SAMN36690121 SRR25395254 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-26__bin.7 MASTER_WP4_CSIC_2__P2616__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter johnsonii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2614__bin.10 61.875 0.3125 17 528665 42.05 34990 SAMN36690121 SRR25395254 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic MASTER_WP4_CSIC_2__P2620__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2614__bin.19 57.7 0 475 6287265 58.42 24514 SAMN36690121 SRR25395254 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2614__bin.19 MASTER_WP4_CSIC_2__P2614__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;unknown unknown cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2614__bin.36 63.6 1.1 2243 10782101 35.4 5942 SAMN36690121 SRR25395254 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2233_73323__bin.18 MASTER_WP4_CSIC_1__P2233_73323__bin.18 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces fabryi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2614__bin.52 68.6 0.6 3056 18731283 61.55 7976 SAMN36690121 SRR25395254 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2614__bin.52 MASTER_WP4_CSIC_2__P2614__bin.52 Basidiomycota;Tremellomycetes;Trichosporonales;Trichosporonaceae;Trichosporon Trichosporon ovoides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2614__bin.14 98.2 0.3 517 12556197 38.67 41773 SAMN36690121 SRR25395254 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2574__bin.24 MASTER_WP4_CSIC_2__P2574__bin.24 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Candida Candida parapsilosis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2614__bin.17 63.2 0.5 5382 26774638 48.52 5710 SAMN36690121 SRR25395254 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__O-30__bin.13 MASTER_WP4_UNINA_2__O-30__bin.13 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium camemberti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2614__bin.24 94.2 0.2 600 19700574 49.05 51013 SAMN36690121 SRR25395254 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0052-001_Yarrowia_lipolytica_CBA6003 ODFM-BA-A-0052-001_Yarrowia_lipolytica_CBA6003 Ascomycota;Saccharomycetes;Saccharomycetales;Dipodascaceae;Yarrowia Yarrowia lipolytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2614__bin.37 58.6 3.6 2652 10260704 36.02 4353 SAMN36690121 SRR25395254 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_CSIC_2__P2614__bin.37 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2614__bin.51 99 0.1 195 10450913 38.73 90077 SAMN36690121 SRR25395254 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2246_73323__bin.19 MASTER_WP4_CSIC_1__P2246_73323__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2615__bin.6 91.51041667 3.875 280 2154817 46.02 10028 SAMN36690122 SRR25395253 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_CSIC_2__P2615__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2615__bin.17 57.78474399 0 260 1171462 35.24 5274 SAMN36690122 SRR25395253 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__O-23.1__bin.12 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2615__bin.13 85.72851967 1.970108696 229 2029176 46.86 14854 SAMN36690122 SRR25395253 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2615__bin.20 88.83744856 3.83698092 380 2296523 44.98 7339 SAMN36690122 SRR25395253 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FontanaF_2023__SRR20746964__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2615__bin.12 93.13528139 2.830808081 232 1740662 64.17 10298 SAMN36690122 SRR25395253 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_296__bin.3 CM_UNINA_FFOOD__FFOOD_296__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2615__bin.29 96.97916667 1.770833333 134 2195989 41.89 27256 SAMN36690122 SRR25395253 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2615__bin.10 100 0 90 1731479 39.26 33950 SAMN36690122 SRR25395253 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2615__bin.21 95.18686869 4.257575758 171 2330653 57.79 22884 SAMN36690122 SRR25395253 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_290__bin.1 MASTER_WP4_CSIC_2__P2615__bin.21 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia crudilactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2615__bin.19 58.62068966 0 340 1895812 41.32 7292 SAMN36690122 SRR25395253 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-26__bin.7 MASTER_WP4_CSIC_2__P2615__bin.19 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter johnsonii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2615__bin.4 56.03448276 0 56 747933 35.64 21336 SAMN36690122 SRR25395253 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2616__bin.15 87.79331332 2.831890332 310 1917421 35.09 8303 SAMN36690123 SRR25395251 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__O-23.1__bin.12 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2616__bin.3 69.23913043 0.09057971 173 1875816 46.74 19568 SAMN36690123 SRR25395251 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2616__bin.22 52.87356322 0.862068966 191 1736476 35.86 14474 SAMN36690123 SRR25395251 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2616__bin.1 91.35802469 4.288837449 381 2494698 45.06 8630 SAMN36690123 SRR25395251 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FontanaF_2023__SRR20746964__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2616__bin.13 94.0625 0 27 1406835 42.27 104517 SAMN36690123 SRR25395251 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic MASTER_WP4_CSIC_2__P2620__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2616__bin.24 98.77630935 0.748898678 134 2765618 55.63 27981 SAMN36690123 SRR25395251 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2616__bin.18 96.80555556 2.379032258 349 2419405 32.99 11262 SAMN36690123 SRR25395251 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2616__bin.5 92.35485975 3.4531790510000002 519 3261684 41.25 8534 SAMN36690123 SRR25395251 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-26__bin.7 MASTER_WP4_CSIC_2__P2616__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter johnsonii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2616__bin.2 60.9 0.5 6024 25791461 48.59 4834 SAMN36690123 SRR25395251 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__O-30__bin.13 MASTER_WP4_CSIC_2__P2616__bin.2 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium camemberti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2616__bin.11 99 0.2 227 10475201 38.73 86594 SAMN36690123 SRR25395251 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2246_73323__bin.19 MASTER_WP4_CSIC_1__P2246_73323__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2616__bin.17 91.1 0.3 1259 19150177 49.07 21863 SAMN36690123 SRR25395251 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0052-001_Yarrowia_lipolytica_CBA6003 ODFM-BA-A-0052-001_Yarrowia_lipolytica_CBA6003 Ascomycota;Saccharomycetes;Saccharomycetales;Dipodascaceae;Yarrowia Yarrowia lipolytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2616__bin.19 97.1 0.1 786 12368812 38.69 25525 SAMN36690123 SRR25395251 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2574__bin.24 MASTER_WP4_CSIC_2__P2574__bin.24 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Candida Candida parapsilosis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2616__bin.25 61.5 2.4 2632 10446661 36.11 4509 SAMN36690123 SRR25395251 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_CSIC_2__P2616__bin.25 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2618__bin.22 95.63762626 0.937950938 241 2151725 35.03 14558 SAMN36690422 SRR25394996 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__O-23.1__bin.12 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2618__bin.28 64.74160946 0 112 1740042 46.73 23559 SAMN36690422 SRR25394996 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2618__bin.8 68.3908046 4.310344828 463 2661220 35.14 8263 SAMN36690422 SRR25394996 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_CSIC_2__P2618__bin.8 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2618__bin.2 95.15432099 3.755144033 368 2464809 45.12 9102 SAMN36690422 SRR25394996 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2618__bin.16 95.36439665 2.777777778 380 3558293 32.29 17580 SAMN36690422 SRR25394996 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2618__bin.13 98.0859375 0 55 2327641 42.51 87419 SAMN36690422 SRR25394996 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic MASTER_WP4_CSIC_2__P2620__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2618__bin.20 50 0 28 741456 46.6 70694 SAMN36690422 SRR25394996 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 AlvarezOrdonezA_xxxx__Q02-30__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2618__bin.30 76.02996255 0 32 2069871 37.06 179607 SAMN36690422 SRR25394996 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2235_73323__bin.9 CM_UNINA_FFOOD__FFOOD_338__bin.20 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2618__bin.4 91.13060429 1.851851852 574 3620225 70.54 8780 SAMN36690422 SRR25394996 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2618__bin.5 97.17439294 0.662251656 86 1994029 39.84 37186 SAMN36690422 SRR25394996 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001885995.1_ASM188599v1_genomic MASTER_WP4_CSIC_2__P2618__bin.5 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_G Enterococcus G italicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2618__bin.14 93.40186001 0.77092511 367 2531060 55.81 9390 SAMN36690422 SRR25394996 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2618__bin.11 98.87387387 0.990990991 174 3049898 67.53 28002 SAMN36690422 SRR25394996 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 FalardeauJ_2023__SRR20811223__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2618__bin.17 89.44444444 0.151515152 89 1820970 32.69 41652 SAMN36690422 SRR25394996 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2618__bin.29 63.5 0.2 1233 8846753 55.58 9367 SAMN36690422 SRR25394996 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. C-R03.bin.3 MASTER_WP4_CSIC_2__P2618__bin.29 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Scheffersomyces Scheffersomyces stipitis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2618__bin.19 96.2 0.1 433 11352241 36.31 50764 SAMN36690422 SRR25394996 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2618__bin.23 92.3 0.2 1204 19321111 49.06 23742 SAMN36690422 SRR25394996 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0052-001_Yarrowia_lipolytica_CBA6003 ODFM-BA-A-0052-001_Yarrowia_lipolytica_CBA6003 Ascomycota;Saccharomycetes;Saccharomycetales;Dipodascaceae;Yarrowia Yarrowia lipolytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2619__bin.8 88.55654762 1.875 301 2070811 45.92 8585 SAMN36690423 SRR25394994 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_CSIC_2__P2619__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2619__bin.54 90.66532258 0.306637807 293 2041097 34.95 9810 SAMN36690423 SRR25394994 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__O-23.1__bin.12 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2619__bin.22 64.10095416 2.205026455 555 2738494 48.4 5485 SAMN36690423 SRR25394994 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811137__bin.9 MacoriG_2019__CS_R36__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia paralvei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2619__bin.37 64.57680251 1.724137931 435 1842466 35.23 4798 SAMN36690423 SRR25394994 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_CSIC_2__P2619__bin.37 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2619__bin.56 77.77888007 3.395061728 371 1892190 45.24 5979 SAMN36690423 SRR25394994 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FontanaF_2023__SRR20746964__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2619__bin.36 63.79310345 0 84 881519 41.72 18962 SAMN36690423 SRR25394994 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. SalgadoTS_2021__SRR13801804__bin.3 MASTER_WP4_CSIC_2__P2619__bin.36 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2619__bin.2 61.51685393 0 49 1780536 36.94 115596 SAMN36690423 SRR25394994 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2235_73323__bin.9 CM_UNINA_FFOOD__FFOOD_338__bin.20 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2619__bin.39 89.81640625 3.313802083 304 1922992 43.84 7815 SAMN36690423 SRR25394994 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2619__bin.42 88.78192641 4.03030303 273 2263649 57.74 12066 SAMN36690423 SRR25394994 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_290__bin.1 MASTER_WP4_CSIC_2__P2615__bin.21 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia crudilactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2619__bin.48 73.86792453 0 139 1937626 35.32 30067 SAMN36690423 SRR25394994 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_178 MAG_178 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2619__bin.43 96.35761589 3.80794702 244 2254488 39.45 12792 SAMN36690423 SRR25394994 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001885995.1_ASM188599v1_genomic MASTER_WP4_CSIC_2__P2618__bin.5 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_G Enterococcus G italicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2619__bin.40 80.73881205 1.054702873 182 1281263 51.41 8118 SAMN36690423 SRR25394994 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_CSIC_2__P2619__bin.40 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2619__bin.17 69.82758621 0 235 2055893 44.73 11434 SAMN36690423 SRR25394994 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2619__bin.23 67.29088639 4.525593009 192 3088260 42.48 23838 SAMN36690423 SRR25394994 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO004_71775__bin.8 MASTER_WP4_UNINA_1__GO004_71775__bin.8 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_A Enterococcus A gilvus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2619__bin.30 53.07291667 0 20 507083 41.96 33649 SAMN36690423 SRR25394994 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic MASTER_WP4_CSIC_2__P2620__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2619__bin.24 59.48275862 0 66 771248 35.75 20560 SAMN36690423 SRR25394994 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2619__bin.41 91.57458564 2.227766886 103 1975018 36.78 35936 SAMN36690423 SRR25394994 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308520__bin.4 MASTER_WP4_CSIC_1__P2233_73323__bin.20 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2619__bin.5 93.38600187 4.943820225 99 1723458 38.99 30722 SAMN36690423 SRR25394994 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc citreum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2619__bin.38 94.41787132 0.81639095 288 4744676 51.86 24609 SAMN36690423 SRR25394994 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_426 MASTER_WP4_CSIC_2__P2619__bin.38 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Citrobacter Citrobacter freundii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2619__bin.31 63.79310345 1.724137931 518 1768422 44.09 3837 SAMN36690423 SRR25394994 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2619__bin.31 MASTER_WP4_CSIC_2__P2619__bin.31 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Moraxella_A Moraxella A sp002478835 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2620__bin.8 80.9183715 1.957070707 407 1614025 35.05 4462 SAMN36690424 SRR25394993 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__O-23.1__bin.12 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2620__bin.26 97.70447531 4.014795218 181 2681241 45.08 22983 SAMN36690424 SRR25394993 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FontanaF_2023__SRR20746964__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2620__bin.9 99.0625 0 47 2293769 42.5 89096 SAMN36690424 SRR25394993 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic MASTER_WP4_CSIC_2__P2620__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2620__bin.24 67.24137931 0 63 1542530 46.6 44125 SAMN36690424 SRR25394993 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 AlvarezOrdonezA_xxxx__Q02-30__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2620__bin.16 73.58490566 0.786163522 143 1661860 35.85 22102 SAMN36690424 SRR25394993 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_178 MAG_178 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2620__bin.6 97.01986755 2.030905077 172 2278577 39.5 21646 SAMN36690424 SRR25394993 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001885995.1_ASM188599v1_genomic MASTER_WP4_CSIC_2__P2618__bin.5 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_G Enterococcus G italicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2620__bin.12 95 0 56 2411733 33.11 84039 SAMN36690424 SRR25394993 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2620__bin.18 86.09271523 0 11 1652590 55.81 234349 SAMN36690424 SRR25394993 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308537__bin.18 MASTER_WP4_CSIC_2__P2620__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia endophytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2620__bin.20 95.3 0.3 1234 33438173 48.42 50024 SAMN36690424 SRR25394993 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__O-30__bin.13 MASTER_WP4_UNINA_2__O-30__bin.13 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium camemberti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2620__bin.14 55.8 2 2444 9476364 35.85 4337 SAMN36690424 SRR25394993 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_CSIC_2__P2620__bin.14 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2621__bin.8 91.47786458 1.354166667 306 2279849 46.13 9866 SAMN36690425 SRR25394992 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_CSIC_2__P2621__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2621__bin.16 93.75 0.883838384 240 2099056 35.14 13470 SAMN36690425 SRR25394992 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__O-23.1__bin.12 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2621__bin.32 55.70652174 0 130 1479147 46.87 17405 SAMN36690425 SRR25394992 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2621__bin.41 70.297805640000007 1.724137931 404 2014923 35.14 6076 SAMN36690425 SRR25394992 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_CSIC_2__P2621__bin.41 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2621__bin.25 92.4382716 3.549382716 424 2379394 45.1 7261 SAMN36690425 SRR25394992 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FontanaF_2023__SRR20746964__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2621__bin.36 93.22916667 0.3125 57 1504397 42.54 43888 SAMN36690425 SRR25394992 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic MASTER_WP4_CSIC_2__P2620__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2621__bin.9 56.89655172 0 44 861870 46.55 43534 SAMN36690425 SRR25394992 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 AlvarezOrdonezA_xxxx__Q02-30__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2621__bin.17 90.21212121 3.814935065 143 2142152 57.78 25487 SAMN36690425 SRR25394992 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_290__bin.1 MASTER_WP4_CSIC_2__P2615__bin.21 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia crudilactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2621__bin.18 87.9245283 1.981132075 246 2661953 35.77 26284 SAMN36690425 SRR25394992 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_178 MAG_178 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2621__bin.33 51.00108225 0 61 791451 35.67 23931 SAMN36690425 SRR25394992 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2621__bin.31 69.4784112 0.616106382 123 1430176 36.19 24842 SAMN36690425 SRR25394992 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_S8 MAG_357 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2621__bin.19 55.1 2.9 3087 9019692 36.37 3118 SAMN36690425 SRR25394992 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_CSIC_2__P2621__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2624__bin.12 76.75376094 2.445652174 388 1529678 42.1 4506 SAMN36690149 SRR25394892 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_2__P2624__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2624__bin.27 92.93031118 1.136363636 241 2004470 34.89 14112 SAMN36690149 SRR25394892 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2624__bin.28 81.48148148 0.529100529 60 1388713 37.95 51837 SAMN36690149 SRR25394892 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2624__bin.3 55.35194427 0.291120815 18 921563 39.45 100841 SAMN36690149 SRR25394892 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2624__bin.6 82.42267734 3.081761006 373 1758231 40.35 5876 SAMN36690149 SRR25394892 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 MASTER_WP4_CSIC_2__P2624__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2624__bin.17 61.15987461 0 96 1099075 35.73 18325 SAMN36690149 SRR25394892 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2624__bin.14 94.39300412 3.086419753 321 2390017 45.21 10102 SAMN36690149 SRR25394892 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2624__bin.18 69.375 0.3125 10 634331 42.11 111481 SAMN36690149 SRR25394892 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2624__bin.15 60.34482759 0 24 1168704 46.73 91331 SAMN36690149 SRR25394892 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_2__P2635__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2624__bin.9 96.49786932 2.9375 366 2405926 43.66 8307 SAMN36690149 SRR25394892 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2624__bin.11 70.17790262 0 34 1276474 37.52 106875 SAMN36690149 SRR25394892 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_104__bin.4 DeFilippisF_xxxx__DF_104__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus macedonicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2624__bin.1 98.64130435 1.902173913 140 2748053 42.92 34007 SAMN36690149 SRR25394892 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 MASTER_WP4_CSIC_2__P2628__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2624__bin.19 96.13259669 0.552486188 31 1926782 36.77 116438 SAMN36690149 SRR25394892 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308520__bin.4 YouL_2022__SRR13308520__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2624__bin.16 80.9375 0.286458333 54 1461330 45.79 42243 SAMN36690149 SRR25394892 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_CSIC_2__P2631__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2625__bin.17 96.5625 0.089285714 92 2317340 46.08 41534 SAMN36690150 SRR25394891 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_CSIC_2__P2631__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2625__bin.13 79.61642636 1.767676768 350 1721809 34.8 6509 SAMN36690150 SRR25394891 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2625__bin.10 60.34482759 0 39 1205400 38.99 62957 SAMN36690150 SRR25394891 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 FontanaF_2023__SRR20746838__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2625__bin.20 84.36401762 4.226588629 378 2097178 46.84 7357 SAMN36690150 SRR25394891 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_2__P2625__bin.20 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2625__bin.23 71.03448276 0 478 1808641 35.53 4173 SAMN36690150 SRR25394891 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_CSIC_2__P2625__bin.23 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2625__bin.19 86.53806584 4.783950617 431 2180800 45.03 5947 SAMN36690150 SRR25394891 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2625__bin.26 97.1875 0.46875 136 2242682 42.53 26459 SAMN36690150 SRR25394891 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2625__bin.21 94.75655431 0.374531835 56 1772774 37.47 51962 SAMN36690150 SRR25394891 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_104__bin.4 DeFilippisF_xxxx__DF_104__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus macedonicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2625__bin.16 95.65217391 1.086956522 120 2512797 43.08 32204 SAMN36690150 SRR25394891 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 MASTER_WP4_CSIC_2__P2628__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2625__bin.3 90.67424242 2.765151515 388 2054680 58 6796 SAMN36690150 SRR25394891 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_290__bin.1 MASTER_WP4_CSIC_2__P2625__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia crudilactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2625__bin.12 61.20689655 0 105 989623 35.71 17753 SAMN36690150 SRR25394891 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2625__bin.1 94.47513812 0.570308323 49 1882296 36.85 77026 SAMN36690150 SRR25394891 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308520__bin.4 YouL_2022__SRR13308520__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2625__bin.4 61.01880878 0 59 1029640 35.89 39529 SAMN36690150 SRR25394891 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_S8 MAG_357 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2626__bin.14 94.53125 0.3125 73 2319536 46.14 45915 SAMN36690151 SRR25394890 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_CSIC_2__P2631__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2626__bin.8 93.90708054 2.075471698 240 2087016 34.83 14261 SAMN36690151 SRR25394890 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2626__bin.4 84.48222084 0.145560408 40 1533368 39.12 74414 SAMN36690151 SRR25394890 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2626__bin.6 63.76811594 0 64 1779879 46.75 40727 SAMN36690151 SRR25394890 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_2__P2635__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2626__bin.11 80.48589342 0 194 2012047 35.28 19758 SAMN36690151 SRR25394890 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2626__bin.9 97.22222222 3.703703704 257 2799767 44.82 16307 SAMN36690151 SRR25394890 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2626__bin.2 99.0625 0 17 2307477 42.52 201802 SAMN36690151 SRR25394890 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2626__bin.3 93.48797874 1.086142322 145 1831709 37.48 20472 SAMN36690151 SRR25394890 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_104__bin.4 DeFilippisF_xxxx__DF_104__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus macedonicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2626__bin.5 96.35821752 1.358695652 202 2573213 43.14 19465 SAMN36690151 SRR25394890 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 MASTER_WP4_CSIC_2__P2628__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2626__bin.13 93.2855106 1.243093923 181 2047727 36.39 17039 SAMN36690151 SRR25394890 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308520__bin.4 YouL_2022__SRR13308520__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2627__bin.16 95.9375 0.3125 82 2324635 46.13 40981 SAMN36690152 SRR25394889 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_CSIC_2__P2631__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2627__bin.5 60.79693448 2.241847826 352 1285695 42.18 3887 SAMN36690152 SRR25394889 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_2__P2627__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2627__bin.9 94.05924123 1.635220126 216 1973149 34.86 14683 SAMN36690152 SRR25394889 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2627__bin.7 72.89247312 0.767295597 386 1644376 40.5 4977 SAMN36690152 SRR25394889 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 MASTER_WP4_CSIC_2__P2627__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2627__bin.10 69.78056426 0 107 1311455 35.85 21499 SAMN36690152 SRR25394889 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2627__bin.13 94.85596708 4.15196943 319 2311337 45.22 9852 SAMN36690152 SRR25394889 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2627__bin.20 84.375 0 17 911095 42.09 73188 SAMN36690152 SRR25394889 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2627__bin.6 60.34482759 0 25 1180326 46.7 91331 SAMN36690152 SRR25394889 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_2__P2635__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2627__bin.2 91.36154514 2.105654762 392 2357144 43.86 7405 SAMN36690152 SRR25394889 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2627__bin.15 83.29104748 0.374531835 47 1700112 37.49 52062 SAMN36690152 SRR25394889 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_104__bin.4 DeFilippisF_xxxx__DF_104__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus macedonicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2627__bin.4 97.82608696 1.902173913 128 2693619 43 38225 SAMN36690152 SRR25394889 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 MASTER_WP4_CSIC_2__P2628__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2627__bin.3 96.13259669 0.552486188 26 1898899 36.84 122037 SAMN36690152 SRR25394889 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308520__bin.4 YouL_2022__SRR13308520__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2628__bin.25 92.1875 0.625 94 2284107 46.12 35670 SAMN36690451 SRR25394808 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_CSIC_2__P2631__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2628__bin.12 91.57608696 0.543478261 120 1619768 42.26 25451 SAMN36690451 SRR25394808 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2628__bin.11 77.70039101 0 148 1587026 35.18 18672 SAMN36690451 SRR25394808 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2628__bin.2 97.8659612 4.497354497 201 2009163 37.61 16175 SAMN36690451 SRR25394808 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2628__bin.10 89.74384968 1.710286062 374 2058569 39.67 6672 SAMN36690451 SRR25394808 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 MASTER_WP4_CSIC_2__P2628__bin.10 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2628__bin.24 94.47463768 0 79 2495378 46.71 46643 SAMN36690451 SRR25394808 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_2__P2635__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2628__bin.4 54.31034483 0 85 1128761 35.69 22393 SAMN36690451 SRR25394808 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2628__bin.7 87.19135802 3.497942387 398 2240395 45.17 6614 SAMN36690451 SRR25394808 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2628__bin.18 90.62630208 0.90625 487 3195783 39.93 8798 SAMN36690451 SRR25394808 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 LandisEA_2021__SRS5653155__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2628__bin.6 97.4609375 0.3125 34 2265197 42.54 118277 SAMN36690451 SRR25394808 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2628__bin.26 87.11904762 2.916666667 469 2079907 43.89 5088 SAMN36690451 SRR25394808 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_CSIC_2__P2628__bin.26 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2628__bin.3 60.52917724 0 29 1139868 37.75 125490 SAMN36690451 SRR25394808 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_104__bin.4 DeFilippisF_xxxx__DF_104__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus macedonicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2628__bin.17 98.36956522 1.358695652 119 2633568 43.09 38225 SAMN36690451 SRR25394808 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 MASTER_WP4_CSIC_2__P2628__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2628__bin.21 95.5801105 0.552486188 35 2067386 36.61 117323 SAMN36690451 SRR25394808 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308520__bin.4 YouL_2022__SRR13308520__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2628__bin.13 97.83683545 1.684039193 155 2792148 32.57 34537 SAMN36690451 SRR25394808 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0136-001_Staphylococcus_aureus_18SBCL679 MASTER_WP4_CSIC_2__P2630__bin.24 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus aureus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2628__bin.20 99.88764045 0 61 1842264 38.61 90336 SAMN36690451 SRR25394808 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc citreum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2629__bin.9 96.40625 0 152 2242547 46.19 21063 SAMN36690452 SRR25394807 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_CSIC_2__P2631__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2629__bin.20 69.23326002 0 124 1299030 35.33 17600 SAMN36690452 SRR25394807 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2629__bin.19 76.80407237 0.941367417 319 1570380 40.75 5838 SAMN36690452 SRR25394807 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 WalshL_xxxx__F1__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2629__bin.26 69.27899687 1.724137931 128 1448035 35.69 18740 SAMN36690452 SRR25394807 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2629__bin.17 97.4609375 0.3125 34 2228172 42.57 109705 SAMN36690452 SRR25394807 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2629__bin.2 68.38768116 0 39 1604975 46.78 87914 SAMN36690452 SRR25394807 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_2__P2635__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2629__bin.15 87.83984375 4.652777778 484 1907662 44.08 4407 SAMN36690452 SRR25394807 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_CSIC_2__P2629__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2629__bin.11 60.81460674 0 29 1190854 37.58 125349 SAMN36690452 SRR25394807 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_104__bin.4 DeFilippisF_xxxx__DF_104__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus macedonicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2629__bin.13 97.2826087 1.902173913 119 2604979 43.08 38800 SAMN36690452 SRR25394807 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 MASTER_WP4_CSIC_2__P2628__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2629__bin.10 96.13259669 0.552486188 34 2058691 36.63 116435 SAMN36690452 SRR25394807 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308520__bin.4 YouL_2022__SRR13308520__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2629__bin.6 98.83426966 2.729589387 132 2844566 32.79 31714 SAMN36690452 SRR25394807 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0136-001_Staphylococcus_aureus_18SBCL679 MASTER_WP4_CSIC_2__P2630__bin.24 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus aureus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2629__bin.8 98.20224719 0.702247191 27 1667670 39.06 100773 SAMN36690452 SRR25394807 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc citreum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2629__bin.22 71.81069959 3.24319028 262 1509198 45.52 7438 SAMN36690452 SRR25394807 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2630__bin.16 90.9375 0.390625 132 2223818 46.2 26752 SAMN36690453 SRR25394805 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_CSIC_2__P2631__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2630__bin.1 95.10869565 0.923913043 105 1566209 42.34 25492 SAMN36690453 SRR25394805 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2630__bin.21 88.55694037 0.378787879 159 1695928 35.17 17888 SAMN36690453 SRR25394805 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2630__bin.10 86.85534591 1.572327044 114 1851255 40.21 24454 SAMN36690453 SRR25394805 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 WalshL_xxxx__F1__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2630__bin.11 72.4137931 1.724137931 110 1426242 35.8 22128 SAMN36690453 SRR25394805 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2630__bin.29 92.90625 3.28125 281 3437355 39.81 20528 SAMN36690453 SRR25394805 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 LandisEA_2021__SRS5653155__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2630__bin.20 98.75 0.3515625 37 2269976 42.55 109634 SAMN36690453 SRR25394805 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2630__bin.4 60.59782609 0 31 1424536 46.77 87983 SAMN36690453 SRR25394805 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_2__P2635__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2630__bin.2 52.05992509 0 29 916741 37.55 106875 SAMN36690453 SRR25394805 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_104__bin.4 DeFilippisF_xxxx__DF_104__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus macedonicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2630__bin.9 97.2826087 1.358695652 121 2637873 43.03 38225 SAMN36690453 SRR25394805 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 MASTER_WP4_CSIC_2__P2628__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2630__bin.18 91.16022099 0.552486188 28 1829992 36.8 122036 SAMN36690453 SRR25394805 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308520__bin.4 YouL_2022__SRR13308520__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2630__bin.24 98.83426966 0.22070626 35 2702689 32.64 164448 SAMN36690453 SRR25394805 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0136-001_Staphylococcus_aureus_18SBCL679 MASTER_WP4_CSIC_2__P2630__bin.24 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus aureus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2630__bin.26 90.8988764 0.561797753 30 1558622 39.07 90336 SAMN36690453 SRR25394805 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc citreum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2630__bin.19 68.44135802 2.9688418579999998 272 1424313 45.32 6363 SAMN36690453 SRR25394805 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2630__bin.28 60.47287641 1.96969697 232 935999 43.63 4384 SAMN36690453 SRR25394805 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2630__bin.28 MASTER_WP4_CSIC_2__P2630__bin.28 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus sp030455605 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2631__bin.1 97.8125 0 89 2333354 46.14 36963 SAMN36690454 SRR25394804 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_CSIC_2__P2631__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2631__bin.4 68.92065819 0.378787879 127 1284648 35.34 16662 SAMN36690454 SRR25394804 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2631__bin.14 98.23633157 4.280904281 154 2126796 37.43 31228 SAMN36690454 SRR25394804 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2631__bin.17 80.55208983 0.145560408 31 1398655 39.44 77278 SAMN36690454 SRR25394804 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2631__bin.10 85.29826524 0.880503145 151 1840327 35.6 19918 SAMN36690454 SRR25394804 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2631__bin.7 95.16460905 4.706790123 361 2345843 45.12 8236 SAMN36690454 SRR25394804 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2631__bin.6 99.0625 0.3515625 33 2272636 42.55 118251 SAMN36690454 SRR25394804 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2631__bin.9 67.24137931 0 36 1470028 46.74 91331 SAMN36690454 SRR25394804 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_2__P2635__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2631__bin.13 92.76156656 4.221230159 474 2202339 43.61 5201 SAMN36690454 SRR25394804 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_CSIC_2__P2631__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2631__bin.3 87.12093754 0.374531835 43 1653289 37.6 75671 SAMN36690454 SRR25394804 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_104__bin.4 DeFilippisF_xxxx__DF_104__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus macedonicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2631__bin.11 98.36956522 1.358695652 115 2630748 43.09 38225 SAMN36690454 SRR25394804 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 MASTER_WP4_CSIC_2__P2628__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2631__bin.19 95.02762431 1.104972376 58 2034072 36.69 56446 SAMN36690454 SRR25394804 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308520__bin.4 YouL_2022__SRR13308520__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2631__bin.5 99.60674157 0.576923077 86 1852717 38.75 61167 SAMN36690454 SRR25394804 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc citreum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2634__bin.16 70.05280073 0.820707071 189 1688882 34.73 14652 SAMN36690153 SRR25394887 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2634__bin.3 88.35978836 0.546168288 45 1532565 37.75 85831 SAMN36690153 SRR25394887 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2634__bin.11 83.06878307 0.017067759 68 1431211 39.43 33473 SAMN36690153 SRR25394887 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2634__bin.20 73.91304348 0 40 1738943 46.78 79710 SAMN36690153 SRR25394887 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_2__P2635__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2634__bin.18 64.08839779 0 27 1568899 36.8 121946 SAMN36690153 SRR25394887 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308520__bin.4 YouL_2022__SRR13308520__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2634__bin.19 62.3 1 1578 7548506 38.87 5256 SAMN36690153 SRR25394887 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. EBC_024.4 MASTER_WP4_CSIC_2__P2634__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces marxianus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2634__bin.5 96.5 0.2 5656 39549734 32.54 10392 SAMN36690153 SRR25394887 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2638__bin.9 MASTER_WP4_CSIC_2__P2638__bin.9 Mucoromycota;Mucoromycetes;Mucorales;Mucoraceae;Mucor Mucor racemosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2635__bin.2 82.42424242 0 176 1834147 35.01 17411 SAMN36690154 SRR25394886 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2635__bin.7 100 0.017067759 55 1759525 37.73 85871 SAMN36690154 SRR25394886 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2635__bin.10 96.05978261 0 75 2529291 46.65 54278 SAMN36690154 SRR25394886 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_2__P2635__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2635__bin.5 90.60773481 0.552486188 30 1948563 36.82 116424 SAMN36690154 SRR25394886 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308520__bin.4 YouL_2022__SRR13308520__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2635__bin.13 75.3 1.3 1582 8871844 39.1 6661 SAMN36690154 SRR25394886 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. EBC_024.4 MASTER_WP4_CSIC_2__P2635__bin.13 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces marxianus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2635__bin.8 95.7 0.2 5832 37624703 32.66 9239 SAMN36690154 SRR25394886 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2638__bin.9 MASTER_WP4_CSIC_2__P2638__bin.9 Mucoromycota;Mucoromycetes;Mucorales;Mucoraceae;Mucor Mucor racemosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2636__bin.18 54.78056426 0 144 1373333 34.93 15296 SAMN36690155 SRR25394885 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2636__bin.7 87.3015873 0.546168288 53 1555603 37.66 85833 SAMN36690155 SRR25394885 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2636__bin.10 89.67391304 0 77 2434182 46.66 54279 SAMN36690155 SRR25394885 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_2__P2635__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2636__bin.9 93.20987654 0.017067759 88 1553392 39.37 24031 SAMN36690155 SRR25394885 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2636__bin.3 91.16022099 0.552486188 41 2012814 36.71 116440 SAMN36690155 SRR25394885 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308520__bin.4 YouL_2022__SRR13308520__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2636__bin.4 67.8 0.9 1648 8321513 39.12 5985 SAMN36690155 SRR25394885 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. EBC_024.4 MASTER_WP4_CSIC_2__P2636__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces marxianus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2636__bin.11 96 0.2 5913 38823398 32.63 9484 SAMN36690155 SRR25394885 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2638__bin.9 MASTER_WP4_CSIC_2__P2638__bin.9 Mucoromycota;Mucoromycetes;Mucorales;Mucoraceae;Mucor Mucor racemosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2637__bin.23 75.57471264 0 177 1718425 35.1 14622 SAMN36690156 SRR25394884 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2637__bin.3 87.3015873 0.017067759 35 1473583 37.87 85863 SAMN36690156 SRR25394884 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2637__bin.15 52.73368607 0.017067759 52 1041667 39.59 26310 SAMN36690156 SRR25394884 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2637__bin.17 59.7826087 0 29 1307337 46.71 84112 SAMN36690156 SRR25394884 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_2__P2635__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2637__bin.1 68.96551724 0 14 1148643 37.26 135132 SAMN36690156 SRR25394884 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308520__bin.4 YouL_2022__SRR13308520__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2637__bin.12 58.9 1.7 1329 7286159 38.94 6853 SAMN36690156 SRR25394884 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2246_73323__bin.19 MASTER_WP4_CSIC_1__P2246_73323__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2637__bin.21 96.6 0.2 6392 41448817 32.74 9530 SAMN36690156 SRR25394884 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2638__bin.9 MASTER_WP4_CSIC_2__P2638__bin.9 Mucoromycota;Mucoromycetes;Mucorales;Mucoraceae;Mucor Mucor racemosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2637__bin.6 64 0 1498 7431000 39.14 5574 SAMN36690156 SRR25394884 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. EBC_024.4 MASTER_WP4_CSIC_2__P2637__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces marxianus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2638__bin.13 100 1.339819082 51 1704829 37.77 85874 SAMN36690455 SRR25394803 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2638__bin.3 94.56521739 0 76 2453152 46.71 53975 SAMN36690455 SRR25394803 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_2__P2635__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2638__bin.1 92.1875 1.25 51 2147806 42.56 68627 SAMN36690455 SRR25394803 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2638__bin.5 92.06349206 0.017067759 74 1484815 39.52 28524 SAMN36690455 SRR25394803 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2638__bin.9 96.8 0.2 5742 38870846 32.61 9941 SAMN36690455 SRR25394803 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2638__bin.9 MASTER_WP4_CSIC_2__P2638__bin.9 Mucoromycota;Mucoromycetes;Mucorales;Mucoraceae;Mucor Mucor racemosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2639__bin.2 70.19969278 0 34 1308596 37.73 99125 SAMN36690456 SRR25394802 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2639__bin.1 97.2826087 0.27173913 135 2511326 46.67 28769 SAMN36690456 SRR25394802 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_2__P2635__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2639__bin.5 85.6 0.4 7278 31661335 32.89 5340 SAMN36690456 SRR25394802 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2638__bin.9 MASTER_WP4_CSIC_2__P2638__bin.9 Mucoromycota;Mucoromycetes;Mucorales;Mucoraceae;Mucor Mucor racemosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2640__bin.5 100 0.017067759 45 1691009 37.77 85835 SAMN36690457 SRR25394801 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2640__bin.6 72.81566339 0.067934783 329 1773073 46.69 6316 SAMN36690457 SRR25394801 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_2__P2635__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2640__bin.4 94.00352734 0 78 1535996 39.37 29520 SAMN36690457 SRR25394801 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2640__bin.7 65.54307116 0 22 1146267 37.61 106876 SAMN36690457 SRR25394801 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_104__bin.4 DeFilippisF_xxxx__DF_104__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus macedonicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2640__bin.3 96 0.2 5587 37247633 32.64 9494 SAMN36690457 SRR25394801 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2638__bin.9 MASTER_WP4_CSIC_2__P2638__bin.9 Mucoromycota;Mucoromycetes;Mucorales;Mucoraceae;Mucor Mucor racemosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2641__bin.3 55.2 0.5 7710 21302775 32.93 2896 SAMN36690458 SRR25394800 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2638__bin.9 MASTER_WP4_CSIC_2__P2641__bin.3 Mucoromycota;Mucoromycetes;Mucorales;Mucoraceae;Mucor Mucor racemosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2644__bin.1 98.36956522 1.358695652 122 1690633 42.15 20366 SAMN36690434 SRR25394982 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2644__bin.4 69.39622642 0.188679245 61 1300921 35.38 30560 SAMN36690434 SRR25394982 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_CSIC_2__P2644__bin.2 63.79310345 0 311 1648809 35.27 6737 SAMN36690434 SRR25394982 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__DC18-04-AC__bin.3 89.19024371 0.378787879 157 1772438 34.92 16912 SAMN36690157 SRR25394883 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__DC18-04-AC__bin.2 88.38197864 0.471698113 126 1958890 35.53 23917 SAMN36690157 SRR25394883 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__DC18-04-AR__bin.5 74.95297806 0 127 1542508 35.04 16675 SAMN36690158 SRR25394882 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__DC18-04-BC__bin.5 77.53918495 0 137 1639235 34.83 17043 SAMN36690159 SRR25394881 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__DC18-04-BC__bin.2 82.97317361 0.471698113 104 1757194 35.6 25517 SAMN36690159 SRR25394881 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__DC18-04-BR__bin.1 68.05642633 0 117 1293764 35.2 15641 SAMN36690160 SRR25394880 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__DC18-04-BR__bin.5 86.1178277 0.471698113 114 1865905 35.48 24689 SAMN36690160 SRR25394880 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__DC18-F-AC__bin.1 76.67711599 0 137 1733719 34.93 17068 SAMN36690467 SRR25395111 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__DC18-F-AC__bin.2 78.25619248 0.471698113 99 1666149 35.63 25517 SAMN36690467 SRR25395111 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__DC18-F-AC__bin.3 97.47807018 0 40 2445521 67.31 91152 SAMN36690467 SRR25395111 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MASTER_WP4_FFoQSI_1__DC18-F-AC__bin.3 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.4 64.6875 0 33 1690974 46.25 64486 SAMN36690468 SRR25395110 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.13 91.12318841 0 137 1500621 42.25 16237 SAMN36690468 SRR25395110 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.15 77.93103448 0 170 1801769 34.87 15603 SAMN36690468 SRR25395110 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.17 82.85996606 0.786163522 115 1704985 35.62 24123 SAMN36690468 SRR25395110 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.12 98.13596491 0 84 2495921 67.45 49792 SAMN36690468 SRR25395110 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.2 94.86338798 1.092896175 80 1910521 38.38 32731 SAMN36690468 SRR25395110 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. C-R03.bin.7 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.2 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Bavariicoccus Bavariicoccus seileri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 99.44444444 0 14 2519633 33.1 586467 SAMN36690468 SRR25395110 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.10 94.62719298 1.535087719 367 2667678 69.19 10425 SAMN36690468 SRR25395110 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2517__bin.17 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.10 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Acidipropionibacterium Acidipropionibacterium jensenii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.20 99.18478261 1.104488079 14 2060365 44.52 208064 SAMN36690468 SRR25395110 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.20 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.20 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Furfurilactobacillus NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__DC18-F-BC__bin.5 86.7285298 0.315656566 188 1900446 34.8 16439 SAMN36690469 SRR25395109 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__DC18-F-BC__bin.2 62.88401254 0 99 1463549 35.56 24455 SAMN36690469 SRR25395109 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__DC18-F-BC__bin.6 79.87938596 0.328947368 462 1707982 66.25 4221 SAMN36690469 SRR25395109 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MASTER_WP4_FFoQSI_1__DC18-F-AC__bin.3 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__DC18-F-BR__bin.12 78.4375 0 34 1885334 46.2 69662 SAMN36690470 SRR25395108 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__DC18-F-BR__bin.7 93.05124224 0.996376812 149 1553933 42.28 16014 SAMN36690470 SRR25395108 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__DC18-F-BR__bin.2 89.09145318 0.503144654 185 1858800 34.89 17047 SAMN36690470 SRR25395108 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__DC18-F-BR__bin.3 50 0 362 1229860 46.99 3491 SAMN36690470 SRR25395108 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_FFoQSI_1__DC18-F-BR__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__DC18-F-BR__bin.15 61.47335423 0 125 1443516 35.66 18646 SAMN36690470 SRR25395108 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__DC18-F-BR__bin.8 99.44444444 0 16 2520605 33.11 375984 SAMN36690470 SRR25395108 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__DC18-F-BR__bin.10 65.2309613 3.495630462 20 3065974 40.06 163735 SAMN36690470 SRR25395108 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0149-001_Enterococcus_malodoratus_DSM_20681 MASTER_WP4_FFoQSI_1__DC18-F-BR__bin.10 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_A Enterococcus A malodoratus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__DC18-F-BR__bin.1 94.0132997 1.104488079 236 1792755 44.82 9877 SAMN36690470 SRR25395108 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.20 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.20 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Furfurilactobacillus NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1D__bin.42 90.83333333 1.388888889 343 2077636 32.92 8158 SAMN36690285 SRR25395145 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1D__bin.1 72.42248062 0.581395349 334 2040244 63.56 7145 SAMN36690285 SRR25395145 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1D__bin.24 53.02251591 0.044052863 178 1396899 55.63 9438 SAMN36690285 SRR25395145 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1D__bin.41 75.53606238 0.584795322 114 1128835 54.53 11797 SAMN36690285 SRR25395145 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1D__bin.9 55.43630752 0.900673401 428 1246347 66.53 3148 SAMN36690285 SRR25395145 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__KM-1D__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1D__bin.28 93.63738739 1.276276276 256 2674418 67.15 16078 SAMN36690285 SRR25395145 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1D__bin.31 52.42648972 0 177 1358139 36.31 9235 SAMN36690285 SRR25395145 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 MASTER_WP4_FFoQSI_1__KM-1D__bin.31 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Ruoffia Ruoffia tabacinasalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1D__bin.49 84.70342523 4.093567251 444 3911380 70.61 13780 SAMN36690285 SRR25395145 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-29__bin.23 MASTER_WP4_FFoQSI_2__VB11-29__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp030457675 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1D__bin.44 92.34972678 1.821493625 128 1852345 36.5 21441 SAMN36690285 SRR25395145 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1D__bin.56 78.39147287 1.220930233 350 2517462 69.12 10293 SAMN36690285 SRR25395145 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1D__bin.55 97.29166667 0 87 2542095 59.8 45235 SAMN36690285 SRR25395145 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1D__bin.23 95.69444444 1.5 355 2917872 73.1 11307 SAMN36690285 SRR25395145 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1D__bin.30 78.29160292 4.987060041 297 1931014 35.85 8018 SAMN36690285 SRR25395145 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1D__bin.32 76.73828837 3.258778259 708 2652415 68.5 4279 SAMN36690285 SRR25395145 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-28__bin.25 MASTER_WP4_FFoQSI_1__KM-1D__bin.32 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium sp900163665 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1D__bin.35 92.38648948 1.792635659 407 4434287 69.1 19035 SAMN36690285 SRR25395145 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1D__bin.37 72.8469216 2.202581369 301 1970005 67.62 9565 SAMN36690285 SRR25395145 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-BG__bin.13 MASTER_WP4_FFoQSI_1__KM-2G__bin.30 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1D__bin.12 97.8021978 0.824175824 227 6197434 69.14 61646 SAMN36690285 SRR25395145 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.28 MASTER_WP4_FFoQSI_1__KM-2D__bin.28 Actinomycetota;Actinomycetes;Streptosporangiales;Streptosporangiaceae;Nocardiopsis Nocardiopsis sp900143625 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1D__bin.52 85.35550459 0.745412844 206 2012118 65.83 13507 SAMN36690285 SRR25395145 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1D__bin.14 87.9748062 3.643410853 449 3153395 65.62 9960 SAMN36690285 SRR25395145 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 MASTER_WP4_FFoQSI_1__KM-5G__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1D__bin.13 97.13178295 4.554263566 221 4405805 64.45 45014 SAMN36690285 SRR25395145 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2020__ERS3466771__bin.3 WalshAM_2020__ERS3466771__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745485 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1D__bin.27 96.94075305 0.290697674 82 4731256 68.87 107111 SAMN36690285 SRR25395145 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1D__bin.27 MASTER_WP4_FFoQSI_1__KM-1D__bin.27 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1D__bin.19 91 0.4 1058 30492314 58.09 41274 SAMN36690285 SRR25395145 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1G__bin.27 97.82407407 3.101851852 256 2570676 32.83 14553 SAMN36690286 SRR25395144 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1G__bin.25 78.33333333 2.277131783 380 2260288 63.55 7524 SAMN36690286 SRR25395144 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1G__bin.17 86.25730994 4.541910331 640 3500843 70.49 7465 SAMN36690286 SRR25395144 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 MASTER_WP4_FFoQSI_1__KM-2D__bin.43 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1G__bin.12 55.61403509 0.584795322 137 1138119 55.54 10002 SAMN36690286 SRR25395144 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1G__bin.30 93.20570571 0.506756757 260 2706246 67.2 15046 SAMN36690286 SRR25395144 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1G__bin.29 92.34972678 1.275045537 131 1682839 36.78 19748 SAMN36690286 SRR25395144 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1G__bin.22 54.7870249 0.065530799 102 1098200 55.02 13497 SAMN36690286 SRR25395144 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1G__bin.16 82.14424951 0.438596491 363 2823225 70.29 11902 SAMN36690286 SRR25395144 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1G__bin.33 85.65891473 0 331 2540482 69.07 10534 SAMN36690286 SRR25395144 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1G__bin.20 91.66666667 0.277777778 151 2528138 59.81 25357 SAMN36690286 SRR25395144 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1G__bin.24 59.72222222 0.138888889 694 2277261 72.87 3616 SAMN36690286 SRR25395144 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-1G__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1G__bin.13 91.44021739 3.269104084 178 2511739 35.5 22942 SAMN36690286 SRR25395144 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1G__bin.18 79.72941901 3.493265993 395 2416085 67.55 8365 SAMN36690286 SRR25395144 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-BG__bin.13 MASTER_WP4_FFoQSI_1__KM-2G__bin.30 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1G__bin.1 95.01529052 1.051223242 145 2492537 65.64 28079 SAMN36690286 SRR25395144 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1G__bin.14 82.37818383 1.744186047 201 2817638 68.38 20832 SAMN36690286 SRR25395144 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-1G__bin.28 81.9 0.4 2396 28300650 58.11 14733 SAMN36690286 SRR25395144 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2D__bin.10 94.44444444 0.555555556 175 2525445 32.88 31244 SAMN36690287 SRR25395143 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2D__bin.1 69.03100775 0.872093023 294 1986471 63.51 8628 SAMN36690287 SRR25395143 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2D__bin.43 98.24561404 0.584795322 151 3762866 70.42 53400 SAMN36690287 SRR25395143 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 MASTER_WP4_FFoQSI_1__KM-2D__bin.43 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2D__bin.33 84.45668135 1.101321586 193 2206496 55.76 14625 SAMN36690287 SRR25395143 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2D__bin.40 91.74603175 3.333333333 259 3176747 43.52 16944 SAMN36690287 SRR25395143 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2G__bin.45 MASTER_WP4_FFoQSI_1__KM-2G__bin.45 Bacteroidota;Bacteroidia;Sphingobacteriales;Sphingobacteriaceae;Sphingobacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2D__bin.32 98.76126126 0.900900901 128 2912527 67.11 48795 SAMN36690287 SRR25395143 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2D__bin.47 59.43573668 3.448275862 344 3607677 62.56 15289 SAMN36690287 SRR25395143 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_619 MASTER_WP4_FFoQSI_1__KM-2D__bin.47 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp900169365 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2D__bin.15 71.86520376 0.862068966 200 2057487 55.97 12660 SAMN36690287 SRR25395143 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2D__bin.18 82.55813953 0.290697674 269 2633051 68.99 14089 SAMN36690287 SRR25395143 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2D__bin.24 97.22222222 0 330 2956338 73.01 12557 SAMN36690287 SRR25395143 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2D__bin.42 94.22757475 0.581395349 387 4404253 69.14 18063 SAMN36690287 SRR25395143 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2D__bin.23 84.48614937 2.735690236 388 2581694 67.4 9147 SAMN36690287 SRR25395143 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-BG__bin.13 MASTER_WP4_FFoQSI_1__KM-2G__bin.30 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2D__bin.28 98.35164835 0 233 6378605 69.1 50422 SAMN36690287 SRR25395143 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.28 MASTER_WP4_FFoQSI_1__KM-2D__bin.28 Actinomycetota;Actinomycetes;Streptosporangiales;Streptosporangiaceae;Nocardiopsis Nocardiopsis sp900143625 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2D__bin.41 95.34021407 1.862166885 191 2273419 65.79 18240 SAMN36690287 SRR25395143 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2D__bin.19 92.92635659 3.765227021 190 4133604 64.59 44658 SAMN36690287 SRR25395143 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2020__ERS3466771__bin.3 WalshAM_2020__ERS3466771__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745485 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2D__bin.17 56.78362573 0 74 1441604 55.7 26816 SAMN36690287 SRR25395143 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2D__bin.36 97.23145072 0.581395349 68 4849196 68.83 111317 SAMN36690287 SRR25395143 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1D__bin.27 MASTER_WP4_FFoQSI_1__KM-1D__bin.27 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2D__bin.34 97.66839378 2.245250432 98 4367862 68.27 99436 SAMN36690287 SRR25395143 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.34 MASTER_WP4_FFoQSI_1__KM-2D__bin.34 Actinomycetota;Actinomycetes;Propionibacteriales;Nocardioidaceae;Nocardioides NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2D__bin.35 89.2 0.3 386 27634098 58.57 114538 SAMN36690287 SRR25395143 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2G__bin.28 98.75 1.805555556 249 2535043 32.91 16421 SAMN36690288 SRR25395403 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2G__bin.51 70.58139535 0.872093023 365 1979508 63.54 6328 SAMN36690288 SRR25395403 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2G__bin.10 94.10331384 4.600389864 574 3719762 70.44 9279 SAMN36690288 SRR25395403 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 MASTER_WP4_FFoQSI_1__KM-2D__bin.43 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2G__bin.48 70.59716104 1.138032305 214 1924635 55.77 12111 SAMN36690288 SRR25395403 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2G__bin.41 90.89668616 1.169590643 153 1726089 55.19 15250 SAMN36690288 SRR25395403 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2G__bin.18 97.36842105 3.253588517 182 2286125 65.88 22575 SAMN36690288 SRR25395403 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2G__bin.45 95.31746032 0.952380952 124 3475738 43.59 59823 SAMN36690288 SRR25395403 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2G__bin.45 MASTER_WP4_FFoQSI_1__KM-2G__bin.45 Bacteroidota;Bacteroidia;Sphingobacteriales;Sphingobacteriaceae;Sphingobacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2G__bin.22 93.58912484 1.126126126 285 2523811 67.26 12760 SAMN36690288 SRR25395403 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2G__bin.12 90.96732224 1.548269581 200 1767017 36.43 12418 SAMN36690288 SRR25395403 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2G__bin.33 87.13450292 3.606237817 352 3151706 70.16 14002 SAMN36690288 SRR25395403 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2G__bin.34 89.0503876 0.290697674 317 2563595 69.03 11531 SAMN36690288 SRR25395403 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2G__bin.2 98.125 1.666666667 101 2715008 59.61 45005 SAMN36690288 SRR25395403 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2G__bin.49 96.11111111 0.763888889 304 2914922 73.15 13412 SAMN36690288 SRR25395403 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2G__bin.27 85.9496124 3.100775194 555 4291779 68.89 12338 SAMN36690288 SRR25395403 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2G__bin.30 84.92283951 1.363636364 451 2565546 67.48 7615 SAMN36690288 SRR25395403 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-BG__bin.13 MASTER_WP4_FFoQSI_1__KM-2G__bin.30 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2G__bin.23 95.71150097 0.779727096 120 2403136 61.06 31662 SAMN36690288 SRR25395403 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__PU007_71775__bin.44 MASTER_WP4_UNINA_1__PU007_71775__bin.44 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2G__bin.21 84.48394495 1.777522936 265 1989302 65.78 11193 SAMN36690288 SRR25395403 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2G__bin.37 96.25968992 2.61627907 191 4426191 64.38 47915 SAMN36690288 SRR25395403 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2020__ERS3466771__bin.3 WalshAM_2020__ERS3466771__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745485 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2G__bin.35 83.95348837 1.259689922 314 3489362 67.55 18081 SAMN36690288 SRR25395403 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2G__bin.46 87.08576998 1.228070175 294 3119764 65.92 16908 SAMN36690288 SRR25395403 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.48 MASTER_WP4_FFoQSI_3__VB13-29__bin.48 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-2G__bin.4 71.9 0.4 3294 25261007 58.23 8999 SAMN36690288 SRR25395403 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-4D__bin.24 81.66666667 0.913621262 568 2803146 63.22 6192 SAMN36690289 SRR25395402 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_FFoQSI_1__KM-4G__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-4D__bin.32 67.96377876 2.038668625 382 1800729 55.61 5430 SAMN36690289 SRR25395402 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-4D__bin.5 94.01559454 1.169590643 210 1969939 55.09 14699 SAMN36690289 SRR25395402 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-4D__bin.17 87.61904762 1.428571429 643 3126574 43.63 5751 SAMN36690289 SRR25395402 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2G__bin.45 MASTER_WP4_FFoQSI_1__KM-2G__bin.45 Bacteroidota;Bacteroidia;Sphingobacteriales;Sphingobacteriaceae;Sphingobacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-4D__bin.22 58.97996357 2.707401888 272 1595516 36.72 7460 SAMN36690289 SRR25395402 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 MASTER_WP4_FFoQSI_1__KM-1D__bin.31 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Ruoffia Ruoffia tabacinasalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-4D__bin.40 99.78991597 0 42 2602159 58.86 101445 SAMN36690289 SRR25395402 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-4D__bin.14 93.76199862 4.189435337 242 1995495 36.23 11897 SAMN36690289 SRR25395402 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-4D__bin.29 95.69536424 3.311258278 333 2604382 36.66 11844 SAMN36690289 SRR25395402 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_2__bin.27 DeFilippisF_xxxx__DS_2__bin.27 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus koreensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-4D__bin.9 88.66317169 1.441677588 269 2404031 55.75 13804 SAMN36690289 SRR25395402 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-4D__bin.31 98.125 2.361111111 201 2692111 59.77 24782 SAMN36690289 SRR25395402 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-4D__bin.13 71.13095238 4.457364341 1267 4538818 68.08 4048 SAMN36690289 SRR25395402 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 MASTER_WP4_FFoQSI_1__KM-5D__bin.21 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-4D__bin.21 86.81138052 3.442551332 543 2396019 65.25 5542 SAMN36690289 SRR25395402 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-4D__bin.21 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-4G__bin.17 85.5620155 0.775193798 371 3006763 63.34 10773 SAMN36690290 SRR25395401 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_FFoQSI_1__KM-4G__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-4G__bin.39 68.70376197 0.80763583 313 1799485 55.66 6490 SAMN36690290 SRR25395401 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-4G__bin.22 88.84990253 1.169590643 164 1982309 55.18 18688 SAMN36690290 SRR25395401 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-4G__bin.30 93.26201201 2.327327327 436 2858723 66.85 9213 SAMN36690290 SRR25395401 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-4G__bin.29 52.02945448 2.18579235 206 1217290 36.88 7286 SAMN36690290 SRR25395401 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 MASTER_WP4_FFoQSI_1__KM-4G__bin.29 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Ruoffia Ruoffia tabacinasalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-4G__bin.28 92.36694678 1.680672269 242 2192832 59.08 12206 SAMN36690290 SRR25395401 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-4G__bin.23 94.70198675 1.545253863 103 2500048 36.37 50536 SAMN36690290 SRR25395401 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_2__bin.27 DeFilippisF_xxxx__DS_2__bin.27 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus koreensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-4G__bin.26 80.24191787 2.053298384 245 1954026 55.84 10170 SAMN36690290 SRR25395401 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-4G__bin.8 99.79166667 0.833333333 99 2666868 59.71 46336 SAMN36690290 SRR25395401 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-4G__bin.24 81.78524374 3.532608696 198 2055045 35.89 16717 SAMN36690290 SRR25395401 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-4G__bin.27 96.10136452 3.50877193 416 3331272 60.67 11798 SAMN36690290 SRR25395401 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__PU007_71775__bin.44 MASTER_WP4_UNINA_1__PU007_71775__bin.44 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-4G__bin.1 85.685707 4.453363914 482 2061511 65.16 4945 SAMN36690290 SRR25395401 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-4D__bin.21 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-5D__bin.39 98.88888889 1.666666667 142 2867249 32.83 59637 SAMN36690291 SRR25395400 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-5D__bin.52 76.32059801 0.658914729 563 2671377 63.45 5714 SAMN36690291 SRR25395400 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-5D__bin.18 64.68428781 0.660792952 323 1668737 55.68 6135 SAMN36690291 SRR25395400 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-5D__bin.38 92.49512671 0.877192982 201 1853446 55.17 14492 SAMN36690291 SRR25395400 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-5D__bin.30 54.57752124 3.198653199 430 1545974 64.29 4005 SAMN36690291 SRR25395400 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__KM-5D__bin.30 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-5D__bin.25 93.61861862 1.801801802 431 2738567 66.95 8170 SAMN36690291 SRR25395400 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-5D__bin.28 98.94957983 0 64 2594241 58.85 73106 SAMN36690291 SRR25395400 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-5D__bin.47 89.49268239 3.3721057230000002 437 2883338 55.97 8939 SAMN36690291 SRR25395400 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-5D__bin.49 99.79166667 1.666666667 93 2722941 59.69 45319 SAMN36690291 SRR25395400 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-5D__bin.21 82.89728682 2.868217054 1147 4805328 68.42 5075 SAMN36690291 SRR25395400 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 MASTER_WP4_FFoQSI_1__KM-5D__bin.21 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-5D__bin.15 91.0331384 2.826510721 327 2432716 60.64 12638 SAMN36690291 SRR25395400 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__PU007_71775__bin.44 MASTER_WP4_UNINA_1__PU007_71775__bin.44 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-5D__bin.13 83.86777341 3.459480122 537 2149386 65.15 4643 SAMN36690291 SRR25395400 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-4D__bin.21 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-5D__bin.36 74.8 0.5 3556 23958685 50.17 8171 SAMN36690291 SRR25395400 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-09-BD__bin.42 MASTER_WP4_FFoQSI_1__VB-09-BD__bin.42 Ascomycota;Sordariomycetes;Hypocreales;Nectriaceae;Fusarium Fusarium domesticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-5G__bin.28 98.33333333 2.5 192 2808597 32.89 25416 SAMN36690292 SRR25395399 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-5G__bin.43 74.69162996 1.321585903 275 1902022 55.65 8526 SAMN36690292 SRR25395399 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 MASTER_WP4_FFoQSI_2__VB05-25__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-5G__bin.41 88.69395712 1.461988304 218 1704859 55.11 11469 SAMN36690292 SRR25395399 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-5G__bin.16 96.7785191 2.163461538 228 2645588 43.94 15317 SAMN36690292 SRR25395399 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy5_bin.lin.34 MASTER_WP4_FFoQSI_3__VB07-30__bin.42 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-5G__bin.26 71.21744847 0.574712644 459 2037659 55.34 4982 SAMN36690292 SRR25395399 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__KM-5G__bin.26 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-5G__bin.27 96.98412698 3.35978836 227 3758478 43.52 29548 SAMN36690292 SRR25395399 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2G__bin.45 MASTER_WP4_FFoQSI_1__KM-2G__bin.45 Bacteroidota;Bacteroidia;Sphingobacteriales;Sphingobacteriaceae;Sphingobacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-5G__bin.29 90.78024453 2.927927928 526 2837753 66.61 6917 SAMN36690292 SRR25395399 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-5G__bin.47 52.29566955 3.026163272 240 1181056 36.87 5939 SAMN36690292 SRR25395399 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 MASTER_WP4_FFoQSI_1__KM-5G__bin.47 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Ruoffia Ruoffia tabacinasalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-5G__bin.18 98.94957983 0 38 2552364 58.9 82127 SAMN36690292 SRR25395399 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-5G__bin.6 50.35202569 0.27173913 160 864366 39.34 6594 SAMN36690292 SRR25395399 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2239_73323__bin.20 MASTER_WP4_FFoQSI_1__KM-5G__bin.6 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-5G__bin.21 78.72433377 1.326998689 263 2106516 55.95 11362 SAMN36690292 SRR25395399 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-5G__bin.15 99.51388889 0.833333333 80 2693646 59.67 51816 SAMN36690292 SRR25395399 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-5G__bin.23 85.62378168 3.849902534 398 2806009 61.03 10253 SAMN36690292 SRR25395399 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__PU007_71775__bin.44 MASTER_WP4_UNINA_1__PU007_71775__bin.44 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-5G__bin.5 97.33527132 2.034883721 358 3808291 65.31 16726 SAMN36690292 SRR25395399 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 MASTER_WP4_FFoQSI_1__KM-5G__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-5G__bin.38 90.96736597 2.097902098 225 1745596 32.87 10582 SAMN36690292 SRR25395399 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-5G__bin.38 MASTER_WP4_FFoQSI_1__KM-5G__bin.38 Bacillota;Clostridia;Tissierellales;Tissierellaceae;Tissierella_A NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__KM-5G__bin.9 58.9 0.5 2742 27517501 57.49 14557 SAMN36690292 SRR25395399 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-04-AC__bin.13 63.35265647 0.529100529 288 907854 37.9 3392 SAMN36690210 SRR25395406 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_FFoQSI_1__RC17-04-AC__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-04-BC__bin.8 50.47021944 0 82 836977 35.22 15909 SAMN36690212 SRR25395404 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-04-BC__bin.4 72.61442048 0.899470899 213 1009402 37.96 5886 SAMN36690212 SRR25395404 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_FFoQSI_3__VB09-26__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-AC__bin.4 50 0 188 1252224 35.43 8754 SAMN36690527 SRR25394963 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_FFoQSI_1__RC17-F-AC__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 99.44444444 0 172 2690160 32.89 36465 SAMN36690528 SRR25394962 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.26 85.31007752 3.100775194 547 2848329 63.41 7271 SAMN36690528 SRR25394962 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.43 80.05506608 1.407244249 327 2155519 55.64 7990 SAMN36690528 SRR25394962 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 MASTER_WP4_FFoQSI_2__VB05-25__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.27 58.75020042 4.650290787 474 1427535 64.73 3153 SAMN36690528 SRR25394962 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.27 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.21 80.20372942 0.503663004 225 2106558 43.96 13064 SAMN36690528 SRR25394962 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy5_bin.lin.34 MASTER_WP4_FFoQSI_3__VB07-30__bin.42 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.33 90.49517652 0.517241379 233 2847435 55.46 20464 SAMN36690528 SRR25394962 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.18 95.44444444 1.666666667 226 3545963 43.4 28889 SAMN36690528 SRR25394962 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2G__bin.45 MASTER_WP4_FFoQSI_1__KM-2G__bin.45 Bacteroidota;Bacteroidia;Sphingobacteriales;Sphingobacteriaceae;Sphingobacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.47 67.39060489 0.990990991 643 2034790 66.21 3393 SAMN36690528 SRR25394962 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.47 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.34 78.68852459 0.273224044 102 1506999 36.03 28819 SAMN36690528 SRR25394962 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.34 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Ruoffia Ruoffia tabacinasalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.7 82.75214292 3.350137496 761 3150181 35.78 4967 SAMN36690528 SRR25394962 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We4_bin.full.28 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.7 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;Mesonia Mesonia profundi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.13 98.5915493 2.992957746 306 2869123 28.61 17827 SAMN36690528 SRR25394962 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB07-30__bin.41 MASTER_WP4_FFoQSI_3__VB07-30__bin.41 Bacillota;Clostridia;Tissierellales;SIT17;Anaeromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.9 86.95063346 3.429445173 300 2815665 55.75 13445 SAMN36690528 SRR25394962 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.6 75.8531746 0.833333333 448 2318572 59.63 6227 SAMN36690528 SRR25394962 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.45 89.72295606 2.957375479 170 3079239 53.2 34187 SAMN36690528 SRR25394962 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.8 MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.8 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter Marinobacter sp030457765 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.20 85.57450135 1.978840125 407 2471435 60.58 7991 SAMN36690528 SRR25394962 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.3 MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.22 93.07992203 1.656920078 458 2982390 60.81 9224 SAMN36690528 SRR25394962 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__PU007_71775__bin.44 MASTER_WP4_UNINA_1__PU007_71775__bin.44 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.23 53.08158585 0.294888598 491 1750356 63.95 3956 SAMN36690528 SRR25394962 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.50 50 1.724137931 192 1574777 46.85 12193 SAMN36690528 SRR25394962 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M15__bin.1 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.50 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Aeromonadaceae;Oceanimonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.25 74.79342729 1.745495495 412 2477056 39.8 9515 SAMN36690528 SRR25394962 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_632 MASTER_WP4_FFoQSI_1__VB-09-M7__bin.80 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.48 90.47028217 1.052869817 97 2252899 36.64 52482 SAMN36690528 SRR25394962 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.48 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.48 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;Psychroflexus Psychroflexus sp030457805 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.29 98.87440758 0.713389621 117 4309838 55.6 69248 SAMN36690528 SRR25394962 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.29 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.29 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Allopusillimonas Allopusillimonas ginsengisoli A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.19 87.98198198 0.540540541 412 2561600 49.73 7541 SAMN36690528 SRR25394962 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2138_73322__bin.7 MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.33 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Salinivibrio Salinivibrio costicola cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.17 52.19435737 0 359 1506726 47.38 4721 SAMN36690528 SRR25394962 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.37 MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.37 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Idiomarina NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.15 89.25126504 4.69102182 454 2323317 33.57 6622 SAMN36690528 SRR25394962 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.15 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.15 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;Psychroflexus NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.31 98.5483871 4.770114943 165 4466864 52.27 76130 SAMN36690528 SRR25394962 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.31 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.31 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.42 94.9 0.1 862 28163693 49.94 47180 SAMN36690528 SRR25394962 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-09-BD__bin.42 MASTER_WP4_FFoQSI_1__VB-09-BD__bin.42 Ascomycota;Sordariomycetes;Hypocreales;Nectriaceae;Fusarium Fusarium domesticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.26 97.5 1.388888889 155 2613954 32.99 39312 SAMN36690530 SRR25394960 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.24 70.80426357 0.581395349 336 1990839 63.2 8132 SAMN36690530 SRR25394960 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.23 92.07048458 2.731277533 206 2528419 55.54 16969 SAMN36690530 SRR25394960 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 MASTER_WP4_FFoQSI_2__VB05-25__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.27 83.00811142 0.224466891 279 1747169 66.07 9013 SAMN36690530 SRR25394960 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.36 83.24921873 0.228937729 210 2283616 43.86 14298 SAMN36690530 SRR25394960 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy5_bin.lin.34 MASTER_WP4_FFoQSI_3__VB07-30__bin.42 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.6 68.28920361 0.431034483 130 1958826 56.02 21505 SAMN36690530 SRR25394960 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.39 94.50793651 1.428571429 138 3587677 43.4 58054 SAMN36690530 SRR25394960 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2G__bin.45 MASTER_WP4_FFoQSI_1__KM-2G__bin.45 Bacteroidota;Bacteroidia;Sphingobacteriales;Sphingobacteriaceae;Sphingobacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.31 89.69811754 2.150290787 351 2057054 69.03 8350 SAMN36690530 SRR25394960 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 160 160 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.42 94.50075075 1.276276276 282 2673795 67.16 13093 SAMN36690530 SRR25394960 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.30 74.76489028 0 401 3036175 70.87 11821 SAMN36690530 SRR25394960 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-29__bin.23 MASTER_WP4_FFoQSI_2__VB11-29__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp030457675 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.18 94.69945355 3.324225865 162 1997907 36.7 20378 SAMN36690530 SRR25394960 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.10 98.5915493 1.232394366 185 2424491 28.43 19464 SAMN36690530 SRR25394960 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB07-30__bin.41 MASTER_WP4_FFoQSI_3__VB07-30__bin.41 Bacillota;Clostridia;Tissierellales;SIT17;Anaeromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.53 81.76714723 0.600698995 220 2436692 55.87 15509 SAMN36690530 SRR25394960 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.47 50.80426357 0.581395349 904 2682663 69.51 3200 SAMN36690530 SRR25394960 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.47 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.8 84.89875052 1.235632184 191 3027242 53.29 24059 SAMN36690530 SRR25394960 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.8 MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.8 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter Marinobacter sp030457765 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.3 92.45689655 0.215517241 55 2568690 61.56 83225 SAMN36690530 SRR25394960 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.3 MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.50 92.78752437 0.292397661 125 2136105 60.98 29880 SAMN36690530 SRR25394960 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__PU007_71775__bin.44 MASTER_WP4_UNINA_1__PU007_71775__bin.44 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.20 96.31498471 1.911314985 168 2513520 65.46 27845 SAMN36690530 SRR25394960 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.29 94.19573643 3.294573643 456 4009695 67.87 13538 SAMN36690530 SRR25394960 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.29 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.4 50.99099099 0 106 1142021 47.09 14586 SAMN36690530 SRR25394960 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M15__bin.1 MASTER_WP4_FFoQSI_1__VB-16-M15__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Aeromonadaceae;Oceanimonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.48 75.86206897 1.724137931 118 2811163 69.04 41545 SAMN36690530 SRR25394960 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_629 MAG_629 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Xanthomonadaceae;Luteimonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.11 58.62068966 0 277 2140598 39.89 11272 SAMN36690530 SRR25394960 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_632 MASTER_WP4_FFoQSI_1__VB-09-M7__bin.80 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.1 50 0 19 2350271 55.12 214001 SAMN36690530 SRR25394960 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.29 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.29 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Allopusillimonas Allopusillimonas ginsengisoli A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.33 90.54054054 0.540540541 208 2756523 49.72 19879 SAMN36690530 SRR25394960 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2138_73322__bin.7 MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.33 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Salinivibrio Salinivibrio costicola cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.37 99.32659933 0.336700337 14 2625457 46.94 300530 SAMN36690530 SRR25394960 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.37 MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.37 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Idiomarina NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.9 52.93103448 0 254 2789157 51.83 14656 SAMN36690530 SRR25394960 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.31 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.31 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.32 51.18483412 0.02787845 12 1993024 56.27 263964 SAMN36690530 SRR25394960 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.32 MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.32 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Allopusillimonas Allopusillimonas ginsengisoli A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.25 93.8 0.1 956 27293759 50.03 40874 SAMN36690530 SRR25394960 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-09-BD__bin.42 MASTER_WP4_FFoQSI_1__VB-09-BD__bin.42 Ascomycota;Sordariomycetes;Hypocreales;Nectriaceae;Fusarium Fusarium domesticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-AG__bin.22 93.03912784 1.916666667 426 2380161 32.8 7395 SAMN36690313 SRR25395032 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-AG__bin.42 81.56976744 3.59496124 547 2978388 63.36 6560 SAMN36690313 SRR25395032 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-AG__bin.29 75.41972589 1.101321586 288 1899118 55.65 7587 SAMN36690313 SRR25395032 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-AG__bin.21 92.20272904 0 138 1645146 55.07 21356 SAMN36690313 SRR25395032 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-AG__bin.12 72.58494031 2.415824916 450 1735389 65.32 4404 SAMN36690313 SRR25395032 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-04-AD__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-AG__bin.20 92.64264264 1.276276276 462 2796233 67.12 7992 SAMN36690313 SRR25395032 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-AG__bin.33 86.2605042 1.680672269 335 2019532 59.14 7706 SAMN36690313 SRR25395032 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-AG__bin.25 52.88335914 4.051565378 380 1213851 36.4 3507 SAMN36690313 SRR25395032 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-03-AG__bin.25 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-AG__bin.30 99.33774834 1.986754967 173 2493152 36.55 30051 SAMN36690313 SRR25395032 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_2__bin.27 DeFilippisF_xxxx__DS_2__bin.27 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus koreensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-AG__bin.24 92.61959371 0.692442114 181 2712112 55.83 25612 SAMN36690313 SRR25395032 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-AG__bin.27 88.33333333 1.398809524 295 2333645 59.95 9947 SAMN36690313 SRR25395032 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-AG__bin.10 89.83944954 4.002839668 293 2995505 63.47 16631 SAMN36690313 SRR25395032 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB03-30__bin.18 MASTER_WP4_FFoQSI_2__VB03-30__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-AG__bin.19 63.47204019 3.394495413 815 3976642 63.14 6578 SAMN36690313 SRR25395032 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 MASTER_WP4_FFoQSI_1__VB-08-BD__bin.60 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;CmP2 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-AG__bin.11 80.84795322 1.629072682 502 2476865 60.64 5764 SAMN36690313 SRR25395032 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__PU007_71775__bin.44 MASTER_WP4_UNINA_1__PU007_71775__bin.44 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-AG__bin.36 59.6 0.7 2707 27616420 57.29 14819 SAMN36690313 SRR25395032 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-BD__bin.18 94.9537037 2.425328554 443 2401641 32.83 7042 SAMN36690314 SRR25395031 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-BD__bin.13 89.47368421 0.584795322 155 1623547 55.1 20394 SAMN36690314 SRR25395031 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-BD__bin.23 61.18205868 1.683501684 445 1500334 64.93 3795 SAMN36690314 SRR25395031 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-04-AD__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-BD__bin.16 93.22447447 2.74024024 450 2803393 67.07 8037 SAMN36690314 SRR25395031 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-BD__bin.11 71.52317881 0.165562914 142 1730178 36.32 20864 SAMN36690314 SRR25395031 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_2__bin.27 DeFilippisF_xxxx__DS_2__bin.27 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus koreensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-BD__bin.47 92.10353866 1.671035387 163 2818881 55.91 30084 SAMN36690314 SRR25395031 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-BD__bin.19 68.86904762 2.228682171 734 2391121 67.94 3551 SAMN36690314 SRR25395031 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-03-BD__bin.19 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-BD__bin.20 60.44834308 3.801169591 574 2377753 60.37 4656 SAMN36690314 SRR25395031 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__PU007_71775__bin.44 MASTER_WP4_FFoQSI_1__VB-03-BD__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-BD__bin.31 59.9 0.7 2574 27614076 57.41 15771 SAMN36690314 SRR25395031 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M5__bin.34 63.64628821 0.58224163 68 1114597 38.66 22546 SAMN36690315 SRR25395030 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M5__bin.25 74.13793103 0 246 2444799 32.91 18257 SAMN36690315 SRR25395030 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M5__bin.26 89.30232558 1.937984496 380 3128975 63.36 11301 SAMN36690315 SRR25395030 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M5__bin.7 96.44249513 4.580896686 441 3895766 70.37 13776 SAMN36690315 SRR25395030 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 MASTER_WP4_FFoQSI_2__VB16-29__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M5__bin.27 69.36123348 0.308370044 209 1759966 55.61 10242 SAMN36690315 SRR25395030 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M5__bin.11 86.06237817 0 120 1471639 54.9 25012 SAMN36690315 SRR25395030 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M5__bin.3 98.4006734 1.01010101 165 2302985 65.85 22495 SAMN36690315 SRR25395030 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M5__bin.38 87.81222746 2.014652015 238 2462833 43.95 12927 SAMN36690315 SRR25395030 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy5_bin.lin.34 MASTER_WP4_FFoQSI_3__VB07-30__bin.42 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M5__bin.14 64.7484985 1.839339339 709 2499557 69.35 3948 SAMN36690315 SRR25395030 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.14 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M5__bin.21 93.69371947 0.849150849 118 2524746 47.44 36307 SAMN36690315 SRR25395030 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2584__bin.5 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.21 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter celer cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M5__bin.29 97.48498498 2.064564565 125 2950631 67.1 48034 SAMN36690315 SRR25395030 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M5__bin.10 53.44827586 0 79 723996 54.76 12884 SAMN36690315 SRR25395030 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M5__bin.17 75.06944444 1 705 2574288 73.01 4317 SAMN36690315 SRR25395030 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M5__bin.31 73.14311594 1.086956522 171 1418083 35.66 11496 SAMN36690315 SRR25395030 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M5__bin.18 93.40116279 1.656976744 367 4413112 69.31 20904 SAMN36690315 SRR25395030 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M5__bin.4 67.24137931 0 263 1694219 66 8156 SAMN36690315 SRR25395030 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 95.05813953 0 269 2963046 68.29 22111 SAMN36690315 SRR25395030 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M5__bin.37 97.6744186 0.872093023 41 3767635 67.39 185384 SAMN36690315 SRR25395030 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.39 MASTER_WP4_FFoQSI_1__VB-03-M6__bin.47 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;CALKWS01 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M5__bin.39 97.80701754 0.584795322 300 3703071 69.8 21188 SAMN36690315 SRR25395030 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.14 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M5__bin.23 90.5 0.4 541 30834816 58.04 88351 SAMN36690315 SRR25395030 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M6__bin.19 97.22222222 3.611111111 243 2569379 33.01 21512 SAMN36690316 SRR25395029 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M6__bin.29 88.10916179 3.50877193 596 3295081 70.57 7568 SAMN36690316 SRR25395029 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.10 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M6__bin.9 52.63157895 0 114 820146 55.29 7875 SAMN36690316 SRR25395029 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 MASTER_WP4_FFoQSI_1__VB-03-M6__bin.9 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M6__bin.32 85.47758285 0.194931774 124 1506184 54.99 19558 SAMN36690316 SRR25395029 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M6__bin.30 95.24410774 1.405723906 176 2219653 65.82 21852 SAMN36690316 SRR25395029 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M6__bin.45 65.51724138 0 203 2189129 43.92 13858 SAMN36690316 SRR25395029 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy5_bin.lin.34 MASTER_WP4_FFoQSI_3__VB07-30__bin.42 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M6__bin.13 89.37329537 0.355603448 422 3201143 63.27 9750 SAMN36690316 SRR25395029 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M6__bin.13 MASTER_WP4_FFoQSI_1__VB-03-M6__bin.13 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Cobetia Cobetia marina cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M6__bin.28 94.09427284 1.426426426 341 3113821 69.26 14075 SAMN36690316 SRR25395029 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_2__P2570__bin.32 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M6__bin.14 91.23021076 1.167582418 98 2499831 47.24 44853 SAMN36690316 SRR25395029 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2584__bin.5 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.21 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter celer cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M6__bin.11 98.003003 0.844594595 97 2888076 67.09 47328 SAMN36690316 SRR25395029 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M6__bin.1 74.84496124 2.906976744 261 2279692 69.09 12037 SAMN36690316 SRR25395029 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M6__bin.3 94.88888889 3.194444444 383 3095774 73.06 11331 SAMN36690316 SRR25395029 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M6__bin.22 68.38768116 1.268115942 177 1347879 35.89 10770 SAMN36690316 SRR25395029 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M6__bin.43 74.2248062 0.581395349 919 4206018 69.37 5702 SAMN36690316 SRR25395029 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M6__bin.7 53.8277512 2.631578947 673 2138257 67.53 3401 SAMN36690316 SRR25395029 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-BG__bin.13 MASTER_WP4_FFoQSI_1__VB-03-M6__bin.7 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M6__bin.16 84.89678899 1.162079511 246 1998840 65.82 11187 SAMN36690316 SRR25395029 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M6__bin.48 94.57364341 0 249 2879304 68.25 22015 SAMN36690316 SRR25395029 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M6__bin.10 97.28344047 3.759820426 179 2921997 69.2 25579 SAMN36690316 SRR25395029 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.36 MASTER_WP4_FFoQSI_1__VB-03-M6__bin.10 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium stercoravium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M6__bin.47 98.02325581 0 70 4000551 67.39 87260 SAMN36690316 SRR25395029 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.39 MASTER_WP4_FFoQSI_1__VB-03-M6__bin.47 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;CALKWS01 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M6__bin.12 97.36842105 1.26705653 346 3724245 69.77 21099 SAMN36690316 SRR25395029 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.14 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-03-M6__bin.42 87.6 0.3 440 27094357 58.59 100296 SAMN36690316 SRR25395029 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-04-AD__bin.33 90.83333333 3.83213859 521 2332725 32.92 5518 SAMN36690317 SRR25395028 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-04-AD__bin.22 89.24418605 1.162790698 578 3127734 63.26 6824 SAMN36690317 SRR25395028 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-04-AD__bin.11 52.63157895 0 34 582445 54.06 33830 SAMN36690317 SRR25395028 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-04-AD__bin.14 80.22328549 2.392344498 457 1857591 65.25 4740 SAMN36690317 SRR25395028 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-04-AD__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-04-AD__bin.20 94.66966967 2.252252252 432 2785617 67.16 8887 SAMN36690317 SRR25395028 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-04-AD__bin.31 57.23489396 0.280112045 426 1617340 59.11 4217 SAMN36690317 SRR25395028 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__VB-04-AD__bin.31 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-04-AD__bin.36 86.24726955 0.524246396 180 2292395 55.96 20715 SAMN36690317 SRR25395028 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-04-AD__bin.15 88.3531746 2.152777778 360 2466674 59.7 8942 SAMN36690317 SRR25395028 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-04-AD__bin.4 70.27395515 4.713848842 674 3306504 62.07 6304 SAMN36690317 SRR25395028 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB03-30__bin.18 MASTER_WP4_FFoQSI_2__VB03-30__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-04-AD__bin.21 88.59927916 4.453363914 500 3521526 64.69 11040 SAMN36690317 SRR25395028 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;CmP2 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-04-AD__bin.13 53.51467331 3.682170543 1076 3612119 63.67 3690 SAMN36690317 SRR25395028 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 MASTER_WP4_FFoQSI_1__VB-04-AD__bin.13 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-04-BG__bin.17 91.57407407 2.008661888 419 2308224 33.02 7790 SAMN36690318 SRR25395027 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-04-BG__bin.24 53.5988742 0.499265786 212 1288027 55.64 6999 SAMN36690318 SRR25395027 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-04-BG__bin.16 90.83820663 0 133 1602659 55.03 25138 SAMN36690318 SRR25395027 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-04-BG__bin.30 74.10634119 1.675084175 425 1815847 65.36 5329 SAMN36690318 SRR25395027 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-04-AD__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-04-BG__bin.12 94.53828829 1.276276276 410 2716920 67.16 8652 SAMN36690318 SRR25395027 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-04-BG__bin.35 87.84895151 1.671035387 190 2526936 55.97 23474 SAMN36690318 SRR25395027 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-04-BG__bin.10 83.3624031 3.63372093 689 2943316 68.02 5087 SAMN36690318 SRR25395027 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-04-BG__bin.10 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-04-BG__bin.25 93.22420635 1 294 2644086 59.58 11560 SAMN36690318 SRR25395027 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-04-BG__bin.2 82.47651813 1.657383137 438 2944574 62.94 9995 SAMN36690318 SRR25395027 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB03-30__bin.18 MASTER_WP4_FFoQSI_2__VB03-30__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-04-BG__bin.1 87.43173875 0.756880734 450 3322508 64.74 12173 SAMN36690318 SRR25395027 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;CmP2 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-04-BG__bin.34 85.163827 3.516819572 462 2125169 65.22 5706 SAMN36690318 SRR25395027 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__VB-04-BG__bin.34 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-04-BG__bin.7 55.8 0.5 2973 26652519 57.21 12064 SAMN36690318 SRR25395027 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-AD__bin.26 92.69444444 2.777777778 350 2302685 32.96 8424 SAMN36690319 SRR25395026 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-AD__bin.34 72.18306412 0.587371512 204 1694320 55.75 9494 SAMN36690319 SRR25395026 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-AD__bin.8 86.64717349 0.682261209 127 1435553 54.98 15924 SAMN36690319 SRR25395026 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-AD__bin.27 92.8490991 0.600600601 315 2521819 67.25 11076 SAMN36690319 SRR25395026 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-AD__bin.22 93.41736695 0 155 2259869 59.11 22180 SAMN36690319 SRR25395026 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-AD__bin.36 97.68211921 1.324503311 202 2220461 36.58 16981 SAMN36690319 SRR25395026 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_2__bin.27 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.9 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus koreensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-AD__bin.24 51.72413793 0 55 671000 54.38 20281 SAMN36690319 SRR25395026 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-AD__bin.4 78.51851852 0 345 2569602 70.23 10945 SAMN36690319 SRR25395026 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-AD__bin.38 79.55426357 0.678294574 265 2155528 69.19 12367 SAMN36690319 SRR25395026 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-AD__bin.19 65.06944444 0 247 1481952 60.24 6467 SAMN36690319 SRR25395026 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-AD__bin.9 91.66666667 1.527777778 280 2770706 73.26 15901 SAMN36690319 SRR25395026 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-AD__bin.20 96.02713178 0.726744186 312 4175013 69.25 26881 SAMN36690319 SRR25395026 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-AD__bin.33 97.22222222 0.805555556 211 3246198 72.26 24274 SAMN36690319 SRR25395026 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-AD__bin.33 MASTER_WP4_FFoQSI_1__VB-05-AD__bin.33 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 JB111 sp900163555 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-AD__bin.39 90.24464832 2.140672783 146 3466097 65.58 44669 SAMN36690319 SRR25395026 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;CmP2 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-AD__bin.42 78.20718654 0.955657492 256 1860293 65.88 10452 SAMN36690319 SRR25395026 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-AD__bin.30 81.8120155 0.872093023 458 2447301 65.77 6448 SAMN36690319 SRR25395026 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 MASTER_WP4_FFoQSI_1__VB-05-AD__bin.30 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-AD__bin.2 92.57751938 0.581395349 116 4153228 64.27 58651 SAMN36690319 SRR25395026 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2020__ERS3466771__bin.3 WalshAM_2020__ERS3466771__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745485 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-AD__bin.44 91.08527132 4.263565891 195 2823003 68.38 23779 SAMN36690319 SRR25395026 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-AD__bin.40 94.15204678 1.461988304 30 2800650 65.58 194068 SAMN36690319 SRR25395026 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.48 MASTER_WP4_FFoQSI_3__VB13-29__bin.48 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-AD__bin.35 96.26823793 1.40291807 60 2847018 68.58 76347 SAMN36690319 SRR25395026 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.1 MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-AD__bin.11 91.03054353 3.044332211 289 2531392 69.22 14411 SAMN36690319 SRR25395026 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.36 MASTER_WP4_FFoQSI_1__VB-03-M6__bin.10 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium stercoravium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-AD__bin.31 86.28176659 3.756476684 573 3419077 67.49 8213 SAMN36690319 SRR25395026 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-BD__bin.48 MASTER_WP4_FFoQSI_1__VB-05-BD__bin.48 Actinomycetota;Actinomycetes;Propionibacteriales;Nocardioidaceae;Aeromicrobium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-AD__bin.14 90.2 0.3 636 26529185 58.74 62598 SAMN36690319 SRR25395026 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.53 94.86111111 0.833333333 213 2448893 32.96 24804 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.42 90.40697674 2.945736434 361 3713401 63.28 15231 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.18 71.24756335 1.169590643 115 1054988 54.5 12109 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.51 96.12068966 0.538793103 135 3010871 55.21 34912 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.62 92.96171171 1.415701416 304 2526700 67.23 11542 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.54 81.09254134 0.845693469 274 1814215 36.42 8533 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 MASTER_WP4_FFoQSI_1__VB-05-BD__bin.54 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Ruoffia Ruoffia tabacinasalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.58 92.61904762 0 148 2229966 59.13 25242 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.10 91.84782609 3.442028986 178 1754875 37.78 13092 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2239_73323__bin.20 MASTER_WP4_FFoQSI_1__VB-06-BG__bin.35 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.24 82.35400771 0.962789487 167 1382411 36.35 10273 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.41 61.17846221 0.658038445 163 1346853 55.69 10342 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.39 86.15984405 1.364522417 390 2821610 70.19 11767 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.60 87.01550388 0.581395349 211 2471744 69.04 19867 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.9 70.51388889 0.833333333 276 1911435 60.12 7688 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.29 92.36111111 1.666666667 291 2880033 73.22 15434 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.25 64.13043478 1.766304348 112 1435616 35.62 18389 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 MASTER_WP4_FFoQSI_1__VB-05-BD__bin.25 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.26 96.31782946 0.581395349 278 4409247 69.12 36344 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.63 77.0515873 0.902777778 594 2909795 72.28 6263 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-AD__bin.33 MASTER_WP4_FFoQSI_1__VB-05-AD__bin.33 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 JB111 sp900163555 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.45 65.29470657 4.486129314 869 3502885 66.02 4581 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;CmP2 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.36 89.68864469 1.040031397 937 5957791 69.29 8981 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.28 MASTER_WP4_FFoQSI_1__KM-2D__bin.28 Actinomycetota;Actinomycetes;Streptosporangiales;Streptosporangiaceae;Nocardiopsis Nocardiopsis sp900143625 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.66 87.02599388 0.573394495 230 1972382 65.85 12390 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.16 80.07751938 2.519379845 535 2431287 65.8 5355 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 MASTER_WP4_FFoQSI_1__VB-05-AD__bin.30 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.21 92.38372093 1.356589147 170 4282872 64.36 53558 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2020__ERS3466771__bin.3 WalshAM_2020__ERS3466771__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745485 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.31 92.29651163 2.771317829 268 2783649 68.46 16518 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.23 93.56725146 0 37 2843597 65.49 136583 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.48 MASTER_WP4_FFoQSI_3__VB13-29__bin.48 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.48 99.74093264 2.124352332 46 3296264 67.57 150828 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-BD__bin.48 MASTER_WP4_FFoQSI_1__VB-05-BD__bin.48 Actinomycetota;Actinomycetes;Propionibacteriales;Nocardioidaceae;Aeromicrobium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.12 91.65921443 2.869971264 217 2730516 63.07 20858 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB07-30__bin.45 MASTER_WP4_FFoQSI_3__VB07-30__bin.45 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Halomonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.19 93.79844961 0.930232558 249 2986417 71.47 17361 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-BD__bin.19 MASTER_WP4_FFoQSI_1__VB-05-BD__bin.19 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JAZGOL01 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.28 98.70931538 1.683501684 52 2920448 68.44 83438 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.1 MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.32 72.4137931 0 289 2316008 55.19 9819 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-BD__bin.32 MASTER_WP4_FFoQSI_1__VB-05-BD__bin.32 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.46 85.69345432 0.473933649 226 2042553 54.69 10457 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-BD__bin.46 MASTER_WP4_FFoQSI_1__VB-05-BD__bin.46 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;JAJYRX01 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BD__bin.14 83.9 0.2 165 23514665 58.91 220344 SAMN36690320 SRR25395025 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BG__bin.37 98.88888889 2.222222222 271 2708122 32.78 15543 SAMN36690321 SRR25395024 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BG__bin.46 96.85077519 1.182170543 358 3877963 63.13 16229 SAMN36690321 SRR25395024 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BG__bin.45 71.52297042 1.223690651 227 1808656 55.65 8879 SAMN36690321 SRR25395024 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 MASTER_WP4_FFoQSI_2__VB05-25__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BG__bin.15 77.97270955 0.14619883 143 1318699 54.87 13011 SAMN36690321 SRR25395024 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BG__bin.24 94.12537538 1.351351351 335 2497197 67.18 9996 SAMN36690321 SRR25395024 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BG__bin.14 93.27731092 0 137 2315803 59.16 30243 SAMN36690321 SRR25395024 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BG__bin.9 88.62891207 3.369763206 172 1650706 36.38 14123 SAMN36690321 SRR25395024 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BG__bin.31 68.6517038 0.409567497 181 1623571 55.88 11188 SAMN36690321 SRR25395024 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BG__bin.39 83.25536062 1.461988304 399 2831399 70.18 11055 SAMN36690321 SRR25395024 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BG__bin.4 75.48449612 0.581395349 155 2436602 68.74 26702 SAMN36690321 SRR25395024 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BG__bin.21 73.75198413 2.916666667 308 1607224 60.16 5850 SAMN36690321 SRR25395024 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BG__bin.25 92.36111111 1.944444444 292 2850248 73.21 15962 SAMN36690321 SRR25395024 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BG__bin.20 97.18992248 0.581395349 266 4226351 69.26 33198 SAMN36690321 SRR25395024 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BG__bin.36 97.22222222 2.986111111 192 3383650 72.23 34615 SAMN36690321 SRR25395024 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-AD__bin.33 MASTER_WP4_FFoQSI_1__VB-05-AD__bin.33 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 JB111 sp900163555 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BG__bin.13 85.19028671 0 258 2380215 67.6 14858 SAMN36690321 SRR25395024 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-BG__bin.13 MASTER_WP4_FFoQSI_1__VB-05-BG__bin.13 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BG__bin.18 60.81039755 0 45 2182814 64.29 120502 SAMN36690321 SRR25395024 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 MASTER_WP4_FFoQSI_1__VB-08-BD__bin.60 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;CmP2 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BG__bin.10 87.57262997 0.630733945 216 1992504 65.78 13245 SAMN36690321 SRR25395024 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BG__bin.17 62.92635659 0.872093023 472 2246476 65.8 5780 SAMN36690321 SRR25395024 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 MASTER_WP4_FFoQSI_1__VB-05-BG__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BG__bin.22 92.98245614 0.292397661 37 2809904 65.51 179298 SAMN36690321 SRR25395024 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.48 MASTER_WP4_FFoQSI_3__VB13-29__bin.48 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-05-BG__bin.33 98.20426487 1.094276094 42 2923349 68.42 107689 SAMN36690321 SRR25395024 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.1 MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-AD__bin.24 77.74294671 0 314 2381029 32.91 11536 SAMN36690322 SRR25395023 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-AD__bin.16 77.71317829 1.124031008 353 2294146 63.44 7681 SAMN36690322 SRR25395023 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-AD__bin.37 69.10425844 0.881057269 150 1709480 55.12 13796 SAMN36690322 SRR25395023 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 MASTER_WP4_FFoQSI_2__VB05-25__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-AD__bin.35 93.37231969 0 79 1760178 55.11 57960 SAMN36690322 SRR25395023 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-AD__bin.25 97.62931034 1.293103448 164 3212601 55.24 27273 SAMN36690322 SRR25395023 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-AD__bin.13 93.93768769 1.126126126 274 2498992 67.18 12154 SAMN36690322 SRR25395023 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-AD__bin.4 94.74789916 0.840336134 123 2363868 59.08 31381 SAMN36690322 SRR25395023 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-AD__bin.31 69.82758621 0 159 1324686 36.38 10123 SAMN36690322 SRR25395023 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-AD__bin.18 81.60299003 0 239 2305516 69.13 15334 SAMN36690322 SRR25395023 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-AD__bin.28 98.125 0 64 2534668 59.82 56542 SAMN36690322 SRR25395023 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-AD__bin.26 84.94444444 3.444444444 622 2719495 72.88 5253 SAMN36690322 SRR25395023 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-AD__bin.11 65.9515575 2.989130435 405 1888780 35.56 5437 SAMN36690322 SRR25395023 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 MASTER_WP4_FFoQSI_1__VB-06-AD__bin.11 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-AD__bin.15 79.61009174 0 231 1733058 65.98 9555 SAMN36690322 SRR25395023 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-AD__bin.39 80.5786268 0.290697674 536 2575503 65.85 5937 SAMN36690322 SRR25395023 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 MASTER_WP4_FFoQSI_1__VB-06-AD__bin.39 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-AD__bin.14 91.32751938 0.484496124 291 2869888 68.39 17692 SAMN36690322 SRR25395023 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 94.63362069 0.05387931 91 3245543 54.17 67304 SAMN36690322 SRR25395023 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-AD__bin.7 98.56902357 2.567340067 199 2810706 68.54 29372 SAMN36690322 SRR25395023 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB06-30__bin.23 MASTER_WP4_FFoQSI_2__VB06-30__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-AD__bin.8 94.83430799 0.730994152 125 4089882 69.81 79916 SAMN36690322 SRR25395023 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB06-30__bin.8 MASTER_WP4_FFoQSI_2__VB06-30__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-AD__bin.9 96.72131148 3.023679417 155 2722690 37.59 30257 SAMN36690322 SRR25395023 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-06-AD__bin.9 MASTER_WP4_FFoQSI_1__VB-06-AD__bin.9 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;NA NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-BG__bin.4 96.66666667 3.444444444 375 2662936 32.97 10604 SAMN36690323 SRR25395021 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-BG__bin.18 83.62403101 1.937984496 460 2625034 63.39 7227 SAMN36690323 SRR25395021 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-BG__bin.32 86.62995595 1.321585903 221 2287983 55.64 13224 SAMN36690323 SRR25395021 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 MASTER_WP4_FFoQSI_2__VB05-25__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-BG__bin.26 60.81871345 0.584795322 92 1546646 55.49 31065 SAMN36690323 SRR25395021 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-BG__bin.31 95.21396396 1.351351351 295 2648253 67.21 13096 SAMN36690323 SRR25395021 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-BG__bin.17 99.78991597 0 100 2530672 59.08 38296 SAMN36690323 SRR25395021 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-BG__bin.35 90.06093544 1.630434783 160 1516627 37.98 12669 SAMN36690323 SRR25395021 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2239_73323__bin.20 MASTER_WP4_FFoQSI_1__VB-06-BG__bin.35 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-BG__bin.38 94.25818203 1.59794668 202 1883309 36.48 13323 SAMN36690323 SRR25395021 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-BG__bin.24 66.4411315 0.409567497 221 1584971 55.76 9294 SAMN36690323 SRR25395021 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-BG__bin.36 82.57198228 0.930232558 250 2372849 69.07 15252 SAMN36690323 SRR25395021 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-BG__bin.19 99.79166667 1.666666667 102 2668045 59.68 43752 SAMN36690323 SRR25395021 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-BG__bin.2 79.11111111 1.904761905 642 2628227 72.72 4686 SAMN36690323 SRR25395021 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__VB-06-BG__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-BG__bin.44 80.79510703 0.917431193 287 1944273 65.72 9960 SAMN36690323 SRR25395021 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-BG__bin.46 87.59689922 3.197674419 720 3110335 65.71 5314 SAMN36690323 SRR25395021 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 MASTER_WP4_FFoQSI_1__VB-06-BG__bin.46 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-BG__bin.22 92.23837209 2.325581395 351 4982219 64.2 24543 SAMN36690323 SRR25395021 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2020__ERS3466771__bin.3 WalshAM_2020__ERS3466771__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745485 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-BG__bin.15 94.63593577 0.484496124 297 3299739 68.17 21136 SAMN36690323 SRR25395021 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-BG__bin.39 95.73275862 0.484913793 124 3307212 54.14 54606 SAMN36690323 SRR25395021 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-BG__bin.33 93.72895623 3.745791246 381 2798789 68.44 11346 SAMN36690323 SRR25395021 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB06-30__bin.23 MASTER_WP4_FFoQSI_2__VB06-30__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-BG__bin.14 99.12280702 2.680311891 204 4155848 69.8 40409 SAMN36690323 SRR25395021 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB06-30__bin.8 MASTER_WP4_FFoQSI_2__VB06-30__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-BG__bin.1 64.5245559 1.880877743 908 4113229 62.82 5425 SAMN36690323 SRR25395021 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__FI109_71775__bin.14 MASTER_WP4_FFoQSI_1__VB-06-BG__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp030457025 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-M1__bin.10 87.18184043 2.21732746 266 2389697 55.7 11165 SAMN36690324 SRR25395020 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-M1__bin.17 89.30555556 1.779279279 568 2562284 66.93 5528 SAMN36690324 SRR25395020 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-M1__bin.22 95.16806723 0.924369748 165 2423449 59.04 23188 SAMN36690324 SRR25395020 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-M1__bin.21 55.14106583 0 93 848510 54.95 12062 SAMN36690324 SRR25395020 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-M1__bin.24 93.63095238 1.944444444 313 2616687 59.6 10522 SAMN36690324 SRR25395020 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-M1__bin.27 75.70554827 0.753604194 530 2424451 63.33 5617 SAMN36690324 SRR25395020 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB03-30__bin.18 MASTER_WP4_FFoQSI_2__VB03-30__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-M1__bin.12 58.85964912 0.779727096 411 1429933 60.32 3782 SAMN36690324 SRR25395020 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__PU007_71775__bin.44 MASTER_WP4_FFoQSI_1__VB-06-M1__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-M1__bin.8 90.74612403 1.647286822 625 3476511 67.74 7611 SAMN36690324 SRR25395020 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-06-M1__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-M1__bin.18 86.11111111 1.11668059 467 2957224 64.85 8762 SAMN36690324 SRR25395020 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.48 MASTER_WP4_FFoQSI_3__VB13-29__bin.48 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-M1__bin.23 97.12643678 0.915948276 126 3423362 54.06 42120 SAMN36690324 SRR25395020 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-M1__bin.1 53.21637427 0 75 1041332 55.3 35403 SAMN36690324 SRR25395020 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-M2__bin.36 88.71512482 2.1989721 292 2312057 55.68 10622 SAMN36690325 SRR25395019 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-M2__bin.9 92.49512671 0 141 1691453 55.02 21118 SAMN36690325 SRR25395019 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-M2__bin.18 79.23637924 3.07968683 656 2432004 66.59 4234 SAMN36690325 SRR25395019 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-M2__bin.3 82.15686275 1.680672269 376 2023801 58.98 6475 SAMN36690325 SRR25395019 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-M2__bin.37 72.3252512 0.065530799 238 1650097 55.77 8280 SAMN36690325 SRR25395019 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-M2__bin.30 92.5297619 0.416666667 240 2679305 59.6 15007 SAMN36690325 SRR25395019 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-M2__bin.13 75.49818841 0.543478261 192 1353735 35.99 11606 SAMN36690325 SRR25395019 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-M2__bin.32 53.60741971 1.937984496 828 2498059 64.46 3174 SAMN36690325 SRR25395019 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 MASTER_WP4_FFoQSI_1__VB-06-M2__bin.32 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-M2__bin.34 83.04263566 3.107696567 756 3028277 67.58 4820 SAMN36690325 SRR25395019 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-06-M1__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-M2__bin.1 70.39821777 0.925925926 552 2618547 64.35 5869 SAMN36690325 SRR25395019 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.48 MASTER_WP4_FFoQSI_3__VB13-29__bin.48 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-06-M2__bin.24 95.67887931 0.431034483 95 3447716 54.06 80320 SAMN36690325 SRR25395019 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-AG__bin.27 94.44444444 1.990740741 180 2654816 32.81 25214 SAMN36690326 SRR25395018 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-AG__bin.33 82.14147287 0.581395349 345 2372364 63.47 8166 SAMN36690326 SRR25395018 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-AG__bin.36 55.72949444 1.145374449 165 1481069 55.47 10356 SAMN36690326 SRR25395018 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-AG__bin.1 72.7582846 0.584795322 69 990777 54.35 24745 SAMN36690326 SRR25395018 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-AG__bin.26 84.91161616 0.563973064 229 1824998 66.13 11290 SAMN36690326 SRR25395018 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-AG__bin.8 98.70689655 1.867816092 143 3066510 55.33 36736 SAMN36690326 SRR25395018 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-AG__bin.48 92.6984127 1.216931217 202 3263400 43.58 22264 SAMN36690326 SRR25395018 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2G__bin.45 MASTER_WP4_FFoQSI_1__KM-2G__bin.45 Bacteroidota;Bacteroidia;Sphingobacteriales;Sphingobacteriaceae;Sphingobacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-AG__bin.10 95.86336336 0.262762763 84 3027282 69.16 55275 SAMN36690326 SRR25395018 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_2__P2570__bin.32 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-AG__bin.19 91.76051051 1.126126126 323 2371957 67.28 9162 SAMN36690326 SRR25395018 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-AG__bin.23 79.14565826 0.420168067 222 2019592 59.28 11165 SAMN36690326 SRR25395018 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-AG__bin.34 87.00863741 1.019448851 119 1805882 36.74 21774 SAMN36690326 SRR25395018 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-AG__bin.18 94.91169978 4.525386313 281 2248787 36.49 10205 SAMN36690326 SRR25395018 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_2__bin.27 DeFilippisF_xxxx__DS_2__bin.27 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus koreensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-AG__bin.25 89.71439493 0.180209699 129 2521805 55.94 29861 SAMN36690326 SRR25395018 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-AG__bin.16 76.21136174 3.118908382 321 2854910 70.26 13310 SAMN36690326 SRR25395018 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-AG__bin.5 86.82170543 0 244 2439325 69.11 14796 SAMN36690326 SRR25395018 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-AG__bin.49 73.59722222 0.833333333 242 1705767 60.08 7937 SAMN36690326 SRR25395018 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-AG__bin.46 92.22222222 0 308 2881640 73.19 15387 SAMN36690326 SRR25395018 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-AG__bin.24 52.22290843 1.268115942 235 1100819 36.08 5307 SAMN36690326 SRR25395018 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 MASTER_WP4_FFoQSI_1__VB-08-AG__bin.24 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-AG__bin.35 94.76744186 4.893410853 383 4115789 69.3 19203 SAMN36690326 SRR25395018 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-AG__bin.51 92.63888889 3.888888889 308 3016404 72.21 17295 SAMN36690326 SRR25395018 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-AD__bin.33 MASTER_WP4_FFoQSI_1__VB-05-AD__bin.33 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 JB111 sp900163555 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-AG__bin.7 97.82492355 2.754113878 118 3141401 63.71 60479 SAMN36690326 SRR25395018 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB03-30__bin.18 MASTER_WP4_FFoQSI_2__VB03-30__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-AG__bin.17 59.63123296 0.505050505 266 1397854 67.46 6356 SAMN36690326 SRR25395018 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-BG__bin.13 MASTER_WP4_FFoQSI_1__VB-05-BG__bin.13 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 96.25382263 1.376146789 48 3375291 65.18 107570 SAMN36690326 SRR25395018 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;CmP2 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-AG__bin.38 87.46588694 0.487329435 108 1892534 60.8 36180 SAMN36690326 SRR25395018 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__PU007_71775__bin.44 MASTER_WP4_UNINA_1__PU007_71775__bin.44 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-AG__bin.22 84.9726955 3.524464832 229 1970983 65.87 12617 SAMN36690326 SRR25395018 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-AG__bin.21 87.96788483 2.034883721 403 3723216 65.58 12873 SAMN36690326 SRR25395018 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 MASTER_WP4_FFoQSI_1__VB-08-AG__bin.21 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-AG__bin.29 75.58139535 2.034883721 198 2768824 68.17 21133 SAMN36690326 SRR25395018 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-AG__bin.9 92.98245614 0.048732943 26 2660782 65.52 217388 SAMN36690326 SRR25395018 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.48 MASTER_WP4_FFoQSI_3__VB13-29__bin.48 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-AG__bin.31 54.12225705 2.586206897 946 2897786 71.61 3326 SAMN36690326 SRR25395018 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.12 MASTER_WP4_FFoQSI_1__VB-08-AG__bin.31 Actinomycetota;Actinomycetes;Actinomycetales;Dermatophilaceae;Janibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-AG__bin.53 98.88285024 2.786012297 130 4634063 68.69 57373 SAMN36690326 SRR25395018 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.53 MASTER_WP4_FFoQSI_1__VB-08-AG__bin.53 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Gordonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-BD__bin.18 91.38888889 1.406810036 439 2309192 32.96 6461 SAMN36690327 SRR25395017 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-BD__bin.25 83.35271318 1.220930233 402 2430555 63.57 7472 SAMN36690327 SRR25395017 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-BD__bin.48 86.68615984 0.584795322 151 1537847 55.01 15841 SAMN36690327 SRR25395017 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-BD__bin.10 89.22558923 1.641414141 258 2001754 66 12162 SAMN36690327 SRR25395017 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-BD__bin.40 77.64580118 1.382902299 353 2235767 55.62 7089 SAMN36690327 SRR25395017 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-BD__bin.15 97.25975976 0 85 3148381 69.09 77017 SAMN36690327 SRR25395017 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_2__P2570__bin.32 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-BD__bin.28 90.93093093 1.351351351 328 2473573 67.25 9665 SAMN36690327 SRR25395017 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-BD__bin.29 92.22689076 1.260504202 207 2277958 59.23 14541 SAMN36690327 SRR25395017 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-BD__bin.13 50.60706402 0.220750552 355 1225163 36.67 3784 SAMN36690327 SRR25395017 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_2__bin.27 MASTER_WP4_FFoQSI_1__VB-08-BD__bin.13 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus koreensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-BD__bin.61 88.10889035 1.028833552 125 2570884 55.97 33803 SAMN36690327 SRR25395017 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-BD__bin.57 80.76550388 0.581395349 380 2419166 69.14 8778 SAMN36690327 SRR25395017 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-BD__bin.24 67.74801587 1.388888889 302 1507597 60.31 5510 SAMN36690327 SRR25395017 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_1__VB-08-BD__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-BD__bin.44 96.38888889 1.666666667 327 2906683 73.26 14402 SAMN36690327 SRR25395017 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-BD__bin.33 93.31395349 1.501937984 399 4063392 69.37 18593 SAMN36690327 SRR25395017 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-BD__bin.23 62.02180536 1.234567901 299 1427024 67.33 6202 SAMN36690327 SRR25395017 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-BG__bin.13 MASTER_WP4_FFoQSI_1__VB-05-BG__bin.13 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-BD__bin.60 95.79510703 2.52293578 95 3676155 65.19 103009 SAMN36690327 SRR25395017 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 MASTER_WP4_FFoQSI_1__VB-08-BD__bin.60 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;CmP2 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-BD__bin.58 92.69005848 0 139 2346045 60.87 35293 SAMN36690327 SRR25395017 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__PU007_71775__bin.44 MASTER_WP4_UNINA_1__PU007_71775__bin.44 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-BD__bin.2 89.8155416 3.571428571 564 5337009 69.18 16822 SAMN36690327 SRR25395017 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.28 MASTER_WP4_FFoQSI_1__KM-2D__bin.28 Actinomycetota;Actinomycetes;Streptosporangiales;Streptosporangiaceae;Nocardiopsis Nocardiopsis sp900143625 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-BD__bin.22 85.06498471 3.473132372 253 2063952 65.76 12241 SAMN36690327 SRR25395017 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-BD__bin.4 88.24612403 4.84496124 527 4297999 65.09 12095 SAMN36690327 SRR25395017 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 MASTER_WP4_FFoQSI_1__VB-14-M18__bin.27 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-BD__bin.5 95.67829457 1.162790698 150 4417047 64.14 57822 SAMN36690327 SRR25395017 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2020__ERS3466771__bin.3 WalshAM_2020__ERS3466771__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745485 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-BD__bin.46 89.24418605 1.841085271 260 3271718 68.13 20950 SAMN36690327 SRR25395017 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-BD__bin.36 92.39766082 2.046783626 111 2759832 65.63 65992 SAMN36690327 SRR25395017 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.48 MASTER_WP4_FFoQSI_3__VB13-29__bin.48 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-BD__bin.1 96.04890605 3.711711712 205 3301966 71.47 28335 SAMN36690327 SRR25395017 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.12 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Dermatophilaceae;Janibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-BD__bin.39 92.95787546 2.335164835 253 7539554 70.61 75797 SAMN36690327 SRR25395017 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-BD__bin.39 MASTER_WP4_FFoQSI_1__VB-08-BD__bin.39 Actinomycetota;Actinomycetes;Streptosporangiales;Streptosporangiaceae;Nocardiopsis NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-BD__bin.8 54.23719958 2.586206897 1136 3924189 68.96 3896 SAMN36690327 SRR25395017 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-BD__bin.8 MASTER_WP4_FFoQSI_1__VB-08-BD__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M3__bin.23 82.17592593 1.666666667 232 2178158 32.67 13880 SAMN36690328 SRR25395016 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M3__bin.18 65.10658915 0 302 1816711 63.48 7178 SAMN36690328 SRR25395016 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M3__bin.8 64.6588694 0 37 874776 54.11 41781 SAMN36690328 SRR25395016 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M3__bin.22 94.6969697 1.178451178 141 2300176 65.8 27461 SAMN36690328 SRR25395016 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M3__bin.9 98.32153582 0.056306306 72 3035466 69.18 68637 SAMN36690328 SRR25395016 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_2__P2570__bin.32 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M3__bin.14 92.86786787 0.675675676 284 2427143 67.25 10931 SAMN36690328 SRR25395016 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M3__bin.24 79.93177388 0.253411306 325 2299846 71.1 10249 SAMN36690328 SRR25395016 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-29__bin.23 MASTER_WP4_FFoQSI_2__VB11-29__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp030457675 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M3__bin.20 90.78089194 1.839708561 136 1686619 36.49 17255 SAMN36690328 SRR25395016 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M3__bin.4 59.68217562 0.180209699 104 1326592 55.46 17964 SAMN36690328 SRR25395016 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M3__bin.19 74.8200443 0.581395349 255 2120632 69.22 11845 SAMN36690328 SRR25395016 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M3__bin.28 97.84722222 0.833333333 102 2551725 59.75 39001 SAMN36690328 SRR25395016 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M3__bin.13 90.55555556 0 382 2991472 73.11 11978 SAMN36690328 SRR25395016 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M3__bin.7 96.60852713 0.581395349 307 4719741 69.17 24311 SAMN36690328 SRR25395016 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M3__bin.25 88.16841415 1.681957187 247 2134034 65.71 12516 SAMN36690328 SRR25395016 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M3__bin.26 86.95736434 3.779069767 415 3182209 65.7 9629 SAMN36690328 SRR25395016 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 MASTER_WP4_FFoQSI_1__VB-08-M3__bin.26 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M3__bin.27 85.27131783 0.775193798 226 2580056 68.47 18816 SAMN36690328 SRR25395016 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M4__bin.18 96.25 1.018518519 248 2415039 32.92 20926 SAMN36690329 SRR25395015 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M4__bin.19 62.75862069 1.724137931 357 1915424 63.59 6508 SAMN36690329 SRR25395015 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M4__bin.6 85.96491228 3.177387914 539 3031761 70.57 8092 SAMN36690329 SRR25395015 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 MASTER_WP4_FFoQSI_2__VB16-29__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M4__bin.21 87.23196881 0 124 1537842 54.97 21356 SAMN36690329 SRR25395015 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M4__bin.29 96.09925008 1.430976431 185 2140478 65.95 19701 SAMN36690329 SRR25395015 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M4__bin.23 85.28090842 0.503663004 218 2396317 43.97 13995 SAMN36690329 SRR25395015 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy5_bin.lin.34 MASTER_WP4_FFoQSI_3__VB07-30__bin.42 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M4__bin.30 95.31317031 1.047297297 105 2875257 69.25 42751 SAMN36690329 SRR25395015 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_2__P2570__bin.32 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M4__bin.25 94.46321321 1.051051051 322 2528727 67.22 10124 SAMN36690329 SRR25395015 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M4__bin.22 87.37373737 3.460837887 217 1914510 36.54 12595 SAMN36690329 SRR25395015 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.34 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Ruoffia Ruoffia tabacinasalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M4__bin.38 94.32773109 0.840336134 111 2413483 59.11 35989 SAMN36690329 SRR25395015 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M4__bin.24 95.77464789 0.176056338 121 2436166 28.35 38715 SAMN36690329 SRR25395015 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB07-30__bin.41 MASTER_WP4_FFoQSI_3__VB07-30__bin.41 Bacillota;Clostridia;Tissierellales;SIT17;Anaeromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M4__bin.9 98.67549669 3.642384106 168 2557820 36.46 25430 SAMN36690329 SRR25395015 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_2__bin.27 DeFilippisF_xxxx__DS_2__bin.27 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus koreensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M4__bin.28 58.07776322 0.715377894 139 1316287 55.52 11783 SAMN36690329 SRR25395015 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M4__bin.3 83.2748538 3.313840156 482 3239518 70.15 9739 SAMN36690329 SRR25395015 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M4__bin.44 88.56589147 0.290697674 284 2520839 69 15043 SAMN36690329 SRR25395015 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M4__bin.1 88.54166667 0 181 2539547 59.75 17425 SAMN36690329 SRR25395015 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M4__bin.32 70.47101449 0.815217391 154 1308552 35.94 11862 SAMN36690329 SRR25395015 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M4__bin.11 91.02713178 1.453488372 478 3408799 65.54 10400 SAMN36690329 SRR25395015 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 MASTER_WP4_FFoQSI_1__VB-08-M4__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-08-M4__bin.12 66.17554859 1.724137931 449 2489566 68.59 7194 SAMN36690329 SRR25395015 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-AG__bin.27 83.84689922 0.775193798 377 2469514 63.48 8421 SAMN36690330 SRR25395014 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-AG__bin.13 68.31765935 3.448275862 793 5253037 69.97 10293 SAMN36690330 SRR25395014 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__771_Tarentaise__bin.3 MASTER_WP4_FFoQSI_1__VB-09-AG__bin.13 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium tyrofermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-AG__bin.43 89.3694521 1.01010101 258 1959589 66.11 12127 SAMN36690330 SRR25395014 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-AG__bin.44 97.4969475 1.556776557 157 2735920 43.82 24853 SAMN36690330 SRR25395014 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy5_bin.lin.34 MASTER_WP4_FFoQSI_3__VB07-30__bin.42 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-AG__bin.33 90.41899087 0.470219436 221 3210663 53.58 21052 SAMN36690330 SRR25395014 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.20 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-AG__bin.8 69.07895069 0.790229885 131 1702451 55.91 23232 SAMN36690330 SRR25395014 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-AG__bin.52 91.15615616 0.965250965 296 2551229 67.81 12596 SAMN36690330 SRR25395014 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 FalardeauJ_2023__SRR20811223__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-AG__bin.49 91.13674625 3.156565657 299 2173761 68.98 10435 SAMN36690330 SRR25395014 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 160 160 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-AG__bin.42 94.61336336 0.878378378 324 2530365 67.21 11048 SAMN36690330 SRR25395014 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-AG__bin.9 92.2976841 0.273224044 124 1969223 36.31 26016 SAMN36690330 SRR25395014 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Ruoffia Ruoffia tabacinasalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-AG__bin.41 79.72709552 0.341130604 348 2764286 70.98 11399 SAMN36690330 SRR25395014 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-29__bin.23 MASTER_WP4_FFoQSI_2__VB11-29__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp030457675 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-AG__bin.21 86.68916253 2.641165756 171 1624138 36.4 11914 SAMN36690330 SRR25395014 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-AG__bin.38 98.56954225 1.936619718 294 2367310 28.39 11677 SAMN36690330 SRR25395014 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB07-30__bin.41 MASTER_WP4_FFoQSI_3__VB07-30__bin.41 Bacillota;Clostridia;Tissierellales;SIT17;Anaeromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-AG__bin.3 93.90142022 4.970760234 307 3633626 70.09 19538 SAMN36690330 SRR25395014 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-AG__bin.19 98.64341085 0.581395349 112 3340531 68.57 55847 SAMN36690330 SRR25395014 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-AG__bin.50 95.48611111 0.833333333 242 2388602 59.83 12468 SAMN36690330 SRR25395014 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-AG__bin.34 88.03389399 3.301114024 432 3669655 65.24 12495 SAMN36690330 SRR25395014 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;CmP2 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-AG__bin.28 91.98198198 0.540540541 174 2546914 47.06 20834 SAMN36690330 SRR25395014 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M15__bin.1 MASTER_WP4_FFoQSI_1__VB-16-M15__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Aeromonadaceae;Oceanimonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-AG__bin.40 89.76608187 4.288499025 386 3104386 68.42 11502 SAMN36690330 SRR25395014 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-09-M7__bin.36 MASTER_WP4_FFoQSI_1__VB-09-M7__bin.36 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-AG__bin.31 95.36978043 4.733840304 275 2449782 33.48 12693 SAMN36690330 SRR25395014 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-09-AG__bin.31 MASTER_WP4_FFoQSI_1__VB-09-AG__bin.31 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;Psychroflexus Psychroflexus halocasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-AG__bin.57 54.83692746 2.752628765 527 1718774 32.79 3350 SAMN36690330 SRR25395014 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-09-AG__bin.57 MASTER_WP4_FFoQSI_1__VB-09-AG__bin.57 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-AG__bin.36 94.1 0.1 734 27999531 49.93 55632 SAMN36690330 SRR25395014 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-09-BD__bin.42 MASTER_WP4_FFoQSI_1__VB-09-BD__bin.42 Ascomycota;Sordariomycetes;Hypocreales;Nectriaceae;Fusarium Fusarium domesticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-BD__bin.17 57.29689367 0.851851852 190 955474 32.83 6496 SAMN36690331 SRR25395013 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-BD__bin.13 83.6627907 1.162790698 570 2989546 63.46 6427 SAMN36690331 SRR25395013 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-BD__bin.20 54.68883295 0.03671072 257 1412299 55.49 6198 SAMN36690331 SRR25395013 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-BD__bin.16 89.96101365 1.033138402 181 1883243 55.28 19942 SAMN36690331 SRR25395013 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-BD__bin.25 64.37449896 2.168109668 444 1516406 65 3888 SAMN36690331 SRR25395013 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-09-BD__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-BD__bin.9 97.93956044 1.671245421 175 2720474 43.9 23422 SAMN36690331 SRR25395013 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy5_bin.lin.34 MASTER_WP4_FFoQSI_3__VB07-30__bin.42 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-BD__bin.27 89.540662 1.364942529 235 2683602 55.5 18163 SAMN36690331 SRR25395013 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-BD__bin.37 95.55555556 3.126984127 217 3466852 43.69 30660 SAMN36690331 SRR25395013 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2G__bin.45 MASTER_WP4_FFoQSI_1__KM-2G__bin.45 Bacteroidota;Bacteroidia;Sphingobacteriales;Sphingobacteriaceae;Sphingobacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-BD__bin.3 95.3480266 1.576576577 427 2722149 67.11 8492 SAMN36690331 SRR25395013 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-BD__bin.32 85.24590164 0.910746812 139 1855918 36.7 20553 SAMN36690331 SRR25395013 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Ruoffia Ruoffia tabacinasalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-BD__bin.45 93.43909748 2.504553734 195 2272825 36.63 17150 SAMN36690331 SRR25395013 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-BD__bin.29 95.8638253 0.431034483 69 3629161 54.11 98153 SAMN36690331 SRR25395013 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-09-BD__bin.29 MASTER_WP4_FFoQSI_1__VB-09-BD__bin.29 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-BD__bin.42 95.6 0.1 799 28558427 49.9 54471 SAMN36690331 SRR25395013 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-09-BD__bin.42 MASTER_WP4_FFoQSI_1__VB-09-BD__bin.42 Ascomycota;Sordariomycetes;Hypocreales;Nectriaceae;Fusarium Fusarium domesticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M7__bin.79 85.7484231 1.420253691 248 1565293 38.93 7978 SAMN36690332 SRR25395012 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 SomervilleV_2019__SRS3593113__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M7__bin.14 92.01105137 3.888888889 511 2423701 32.74 5848 SAMN36690332 SRR25395012 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__VB-09-M8__bin.67 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M7__bin.35 77.96788483 3.682170543 472 2411183 63.51 6582 SAMN36690332 SRR25395012 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M7__bin.28 87.85575049 1.510721248 188 1700148 55 16988 SAMN36690332 SRR25395012 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M7__bin.60 87.60521886 0.887664524 286 1834906 66.13 8977 SAMN36690332 SRR25395012 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M7__bin.57 90.67814207 0.686813187 174 2363792 43.96 17756 SAMN36690332 SRR25395012 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy5_bin.lin.34 MASTER_WP4_FFoQSI_3__VB07-30__bin.42 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M7__bin.49 63.51121731 0.732758621 132 1780324 56.26 22161 SAMN36690332 SRR25395012 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M7__bin.85 88.31746032 2.380952381 253 3071284 43.54 21286 SAMN36690332 SRR25395012 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2G__bin.45 MASTER_WP4_FFoQSI_1__KM-2G__bin.45 Bacteroidota;Bacteroidia;Sphingobacteriales;Sphingobacteriaceae;Sphingobacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M7__bin.29 90.65315315 2.267267267 206 2514442 67.81 22791 SAMN36690332 SRR25395012 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 FalardeauJ_2023__SRR20811223__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M7__bin.61 96.8487395 0 60 2523143 58.99 77213 SAMN36690332 SRR25395012 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M7__bin.44 92.63705271 4.677335415 225 2281347 36.67 15697 SAMN36690332 SRR25395012 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M7__bin.54 84.98050682 2.631578947 400 3175238 70.31 12696 SAMN36690332 SRR25395012 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M7__bin.46 91.86046512 1.162790698 340 2766476 68.98 12866 SAMN36690332 SRR25395012 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M7__bin.1 92.20833333 0.916666667 332 2274020 59.94 8233 SAMN36690332 SRR25395012 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M7__bin.69 92.93478261 1.630434783 80 2220589 35.86 41015 SAMN36690332 SRR25395012 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M7__bin.42 78.63189981 2.735690236 560 2627442 68.24 6162 SAMN36690332 SRR25395012 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-28__bin.25 MASTER_WP4_FFoQSI_2__VB04-29__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium sp900163665 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M7__bin.43 85.5620155 1.550387597 553 3689354 69.36 9075 SAMN36690332 SRR25395012 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M7__bin.27 82.73190622 2.46450415 532 2721147 63.99 6392 SAMN36690332 SRR25395012 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB03-30__bin.18 MASTER_WP4_FFoQSI_1__VB-09-M7__bin.27 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M7__bin.13 93.00518135 1.03626943 179 3501204 66.32 45357 SAMN36690332 SRR25395012 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-09-M8__bin.3 MASTER_WP4_FFoQSI_1__VB-09-M8__bin.3 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Avipropionibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M7__bin.39 64.28032125 4.208754209 441 1962115 67.7 5808 SAMN36690332 SRR25395012 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-BG__bin.13 MASTER_WP4_FFoQSI_1__VB-09-M7__bin.39 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M7__bin.76 92.05653021 3.118908382 301 3528083 60.78 20126 SAMN36690332 SRR25395012 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__PU007_71775__bin.44 MASTER_WP4_UNINA_1__PU007_71775__bin.44 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M7__bin.82 97.66081871 4.873294347 105 3118791 65.52 78459 SAMN36690332 SRR25395012 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.48 MASTER_WP4_FFoQSI_3__VB13-29__bin.48 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M7__bin.18 92.64132554 1.851851852 324 3478507 71 16316 SAMN36690332 SRR25395012 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M15__bin.31 MASTER_WP4_FFoQSI_1__VB-09-M7__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Gulosibacter Gulosibacter sp900163695 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M7__bin.80 94.46187259 1.236573112 276 3679550 39.6 21326 SAMN36690332 SRR25395012 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_632 MASTER_WP4_FFoQSI_1__VB-09-M7__bin.80 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M7__bin.36 91.36452242 4.288499025 216 3144276 68.92 29557 SAMN36690332 SRR25395012 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-09-M7__bin.36 MASTER_WP4_FFoQSI_1__VB-09-M7__bin.36 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M7__bin.19 97.59590609 3.033175355 56 4158634 55.21 113739 SAMN36690332 SRR25395012 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_440 MASTER_WP4_FFoQSI_1__VB-09-M7__bin.19 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Advenella Advenella sp003533245 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M7__bin.47 97.08994709 3.61952862 169 4025766 64.41 96333 SAMN36690332 SRR25395012 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-09-M7__bin.47 MASTER_WP4_FFoQSI_1__VB-09-M7__bin.47 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M7__bin.53 94.99593087 0.473933649 101 3791957 54.69 75184 SAMN36690332 SRR25395012 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-09-M7__bin.53 MASTER_WP4_FFoQSI_1__VB-09-M7__bin.53 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Advenella Advenella sp002810445 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M7__bin.64 71.87830688 1.461988304 754 2580829 67.54 3922 SAMN36690332 SRR25395012 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-09-M7__bin.64 MASTER_WP4_FFoQSI_1__VB-09-M7__bin.64 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Pseudoclavibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M7__bin.74 84.8 0.4 2928 30478809 48.56 13613 SAMN36690332 SRR25395012 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__O-30__bin.13 MASTER_WP4_UNINA_2__O-30__bin.13 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium camemberti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M8__bin.26 55.48589342 1.724137931 400 1821227 34.27 5760 SAMN36690333 SRR25395010 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_FFoQSI_1__VB-09-M8__bin.26 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M8__bin.45 68.96551724 0 223 1310700 39.37 6512 SAMN36690333 SRR25395010 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 SomervilleV_2019__SRS3593113__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M8__bin.67 94.91161616 4.444444444 466 2868375 32.86 8304 SAMN36690333 SRR25395010 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__VB-09-M8__bin.67 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M8__bin.36 77.21207087 1.744186047 418 2056923 63.43 5912 SAMN36690333 SRR25395010 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M8__bin.5 93.46978558 0.584795322 149 1910440 55.13 25750 SAMN36690333 SRR25395010 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M8__bin.72 89.98125191 1.178451178 320 1961211 66 9982 SAMN36690333 SRR25395010 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M8__bin.51 88.38862603 1.509227952 294 2463105 43.9 10706 SAMN36690333 SRR25395010 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy5_bin.lin.34 MASTER_WP4_FFoQSI_3__VB07-30__bin.42 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M8__bin.52 90.41564214 0.574712644 215 2794938 55.41 20815 SAMN36690333 SRR25395010 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M8__bin.32 83.83333333 1.206349206 245 2808210 43.54 18520 SAMN36690333 SRR25395010 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2G__bin.45 MASTER_WP4_FFoQSI_1__KM-2G__bin.45 Bacteroidota;Bacteroidia;Sphingobacteriales;Sphingobacteriaceae;Sphingobacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M8__bin.66 94.63960448 4.799635701 242 2071000 36.37 11685 SAMN36690333 SRR25395010 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Ruoffia Ruoffia tabacinasalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M8__bin.14 59.48275862 3.448275862 369 3336705 70.9 16904 SAMN36690333 SRR25395010 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-29__bin.23 MASTER_WP4_FFoQSI_1__VB-09-M8__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp030457675 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M8__bin.56 71.46317829 4.748062016 613 4362123 62.32 9694 SAMN36690333 SRR25395010 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_619 MASTER_WP4_FFoQSI_1__VB-09-M8__bin.56 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp900169365 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M8__bin.25 55.13259436 3.460837887 383 1285300 36.23 3560 SAMN36690333 SRR25395010 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-09-M8__bin.25 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M8__bin.31 66.21068152 1.594582787 194 1524260 55.74 10061 SAMN36690333 SRR25395010 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M8__bin.73 78.7454748 1.461988304 296 2773205 70.2 13948 SAMN36690333 SRR25395010 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M8__bin.70 87.20930233 0.484496124 355 2746695 68.79 12554 SAMN36690333 SRR25395010 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M8__bin.33 91.38888889 2.430555556 315 2346697 59.9 9258 SAMN36690333 SRR25395010 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M8__bin.69 87.25396825 4.444444444 488 3330199 72.98 9839 SAMN36690333 SRR25395010 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M8__bin.63 91.71195652 1.630434783 143 2095647 36.06 23821 SAMN36690333 SRR25395010 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M8__bin.60 75.19500561 3.872053872 539 2578380 68.04 6363 SAMN36690333 SRR25395010 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-28__bin.25 MASTER_WP4_FFoQSI_2__VB04-29__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium sp900163665 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M8__bin.43 88.2751938 2.131782946 481 4224323 69.13 13470 SAMN36690333 SRR25395010 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M8__bin.8 96.38888889 2.083333333 303 3126640 72.32 19026 SAMN36690333 SRR25395010 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-AD__bin.33 MASTER_WP4_FFoQSI_1__VB-05-AD__bin.33 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 JB111 sp900163555 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M8__bin.44 83.37101354 1.021188292 504 2597013 64.06 6172 SAMN36690333 SRR25395010 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB03-30__bin.18 MASTER_WP4_FFoQSI_1__VB-09-M8__bin.44 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M8__bin.47 78.83796323 0.431034483 30 3203097 54.26 250083 SAMN36690333 SRR25395010 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-09-BD__bin.29 MASTER_WP4_FFoQSI_1__VB-09-BD__bin.29 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M8__bin.3 98.1865285 1.295336788 172 3640744 66.3 43519 SAMN36690333 SRR25395010 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-09-M8__bin.3 MASTER_WP4_FFoQSI_1__VB-09-M8__bin.3 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Avipropionibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-09-M8__bin.57 52.9 0.4 3378 17066731 50.16 5463 SAMN36690333 SRR25395010 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-09-BD__bin.42 MASTER_WP4_FFoQSI_1__VB-09-BD__bin.42 Ascomycota;Sordariomycetes;Hypocreales;Nectriaceae;Fusarium Fusarium domesticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-12D__bin.4 88.6627907 3.343023256 500 3302968 63.51 8940 SAMN36690583 SRR25395066 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-12D__bin.1 80.54331865 1.519823789 257 2183083 55.72 11170 SAMN36690583 SRR25395066 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 MASTER_WP4_FFoQSI_2__VB05-25__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-12D__bin.8 82.12475634 1.705653021 220 1522901 55.01 8296 SAMN36690583 SRR25395066 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-12D__bin.11 99.82399755 0.168350168 38 2492499 65.47 107297 SAMN36690583 SRR25395066 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-12D__bin.20 96.44396552 0 109 3610986 53.5 62572 SAMN36690583 SRR25395066 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.20 MASTER_WP4_FFoQSI_1__VB-12D__bin.20 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-12D__bin.25 94.57614943 0.574712644 136 3113377 55.26 41767 SAMN36690583 SRR25395066 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-12D__bin.45 94.9047619 2.619047619 148 3632215 43.45 53724 SAMN36690583 SRR25395066 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2G__bin.45 MASTER_WP4_FFoQSI_1__KM-2G__bin.45 Bacteroidota;Bacteroidia;Sphingobacteriales;Sphingobacteriaceae;Sphingobacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-12D__bin.19 95.38288288 1.051051051 156 2963118 67.07 31638 SAMN36690583 SRR25395066 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-12D__bin.12 70.0039032 3.825136612 148 1288311 35.9 11783 SAMN36690583 SRR25395066 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 MASTER_WP4_FFoQSI_1__VB-12D__bin.12 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Ruoffia Ruoffia tabacinasalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-12D__bin.2 71.42311053 1.21231979 201 1542516 55.71 9506 SAMN36690583 SRR25395066 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-12D__bin.37 84.01559454 0.877192982 360 2641864 70.26 12060 SAMN36690583 SRR25395066 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-12D__bin.13 81.68604651 0.775193798 343 2423658 69.1 10187 SAMN36690583 SRR25395066 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-12D__bin.32 84.69246032 0.416666667 361 1816692 60.19 5729 SAMN36690583 SRR25395066 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-12D__bin.27 95.13888889 1.25 305 3039865 73.09 14845 SAMN36690583 SRR25395066 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-12D__bin.24 91.20795107 1.376146789 50 3461870 65.31 143266 SAMN36690583 SRR25395066 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;CmP2 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-12D__bin.17 95.84261686 1.337920489 218 2514867 65.45 20094 SAMN36690583 SRR25395066 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-12D__bin.10 97.27833895 0.942760943 69 2862900 68.58 77590 SAMN36690583 SRR25395066 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.1 MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-12D__bin.15 85.8290883 2.083333333 471 2508812 63.23 6424 SAMN36690583 SRR25395066 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB07-30__bin.45 MASTER_WP4_FFoQSI_1__VB-12D__bin.15 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Halomonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-12D__bin.16 51.72413793 0 300 1443476 46.93 5265 SAMN36690583 SRR25395066 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M15__bin.1 MASTER_WP4_FFoQSI_1__VB-12D__bin.16 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Aeromonadaceae;Oceanimonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-12D__bin.31 69 0.1 4005 24710928 58.25 7139 SAMN36690583 SRR25395066 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-AD__bin.3 98.88888889 1.805555556 169 2719317 32.77 36135 SAMN36690334 SRR25395009 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-AD__bin.24 76.63067553 3.197674419 581 2805872 63.16 6050 SAMN36690334 SRR25395009 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_FFoQSI_1__VB-14-AD__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-AD__bin.7 89.00881057 1.101321586 240 2463501 55.58 14157 SAMN36690334 SRR25395009 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-AD__bin.9 92.30019493 2.046783626 159 1961656 55.13 19288 SAMN36690334 SRR25395009 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-AD__bin.31 66.66939712 0.734491044 221 1579959 55.56 8352 SAMN36690334 SRR25395009 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-AD__bin.6 50.87719298 0 827 2710817 69.48 3563 SAMN36690334 SRR25395009 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 MASTER_WP4_FFoQSI_1__VB-14-AD__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-AD__bin.11 85.7 0 2105 23361736 47.95 15256 SAMN36690334 SRR25395009 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14-AD__bin.11 MASTER_WP4_FFoQSI_1__VB-14-AD__bin.11 Ascomycota;Eurotiomycetes;Onygenales;Arachnomycetaceae;unknown unknown cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-AD__bin.18 59.2 0.5 2494 27446771 57.38 16062 SAMN36690334 SRR25395009 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-BG__bin.33 96.15740741 1.388888889 270 2416880 32.86 15891 SAMN36690335 SRR25395008 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-BG__bin.12 77.85119922 1.468428781 248 2031181 55.79 9844 SAMN36690335 SRR25395008 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-BG__bin.8 94.24951267 0 116 1998371 55.09 27066 SAMN36690335 SRR25395008 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-BG__bin.37 93.76876877 2.072072072 396 2794907 67.14 9572 SAMN36690335 SRR25395008 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-BG__bin.31 79.36111111 0 327 2149413 59.69 8104 SAMN36690335 SRR25395008 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-BG__bin.3 84.51086957 2.355072464 207 1752964 35.89 12251 SAMN36690335 SRR25395008 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-BG__bin.28 93.77839668 3.363914373 290 2657550 65.28 13997 SAMN36690335 SRR25395008 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__VB-14-BG__bin.28 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-BG__bin.19 58.38557994 4.106583072 597 2089412 65.77 4020 SAMN36690335 SRR25395008 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 MASTER_WP4_FFoQSI_1__VB-14-BG__bin.19 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M17__bin.22 83.22729988 2.546296296 389 2339568 32.69 7343 SAMN36690336 SRR25395007 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M17__bin.2 91.01946619 1.821192053 309 2207703 35.71 9854 SAMN36690336 SRR25395007 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 MASTER_WP4_FFoQSI_1__VB-14-M17__bin.2 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M17__bin.26 89.35672515 4.561403509 712 4043089 70.4 7769 SAMN36690336 SRR25395007 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 MASTER_WP4_FFoQSI_1__VB-14-M17__bin.26 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M17__bin.13 77.582846 0.584795322 112 1187187 54.49 14426 SAMN36690336 SRR25395007 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M17__bin.3 76.76767677 2.398989899 168 2371709 68.27 26060 SAMN36690336 SRR25395007 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 160 MASTER_WP4_FFoQSI_2__VB05-30__bin.16 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M17__bin.15 92.71771772 1.126126126 291 2575991 67.11 12438 SAMN36690336 SRR25395007 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M17__bin.12 93.48739496 0 174 2220180 59.17 20344 SAMN36690336 SRR25395007 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M17__bin.31 89.13043478 2.449181254 187 1541557 37.85 10495 SAMN36690336 SRR25395007 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2239_73323__bin.20 MASTER_WP4_FFoQSI_1__VB-06-BG__bin.35 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M17__bin.29 87.30125154 2.732240437 161 1594437 36.46 13399 SAMN36690336 SRR25395007 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M17__bin.20 84.71540439 3.804347826 485 2277347 30.39 6170 SAMN36690336 SRR25395007 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2558__bin.17 MASTER_WP4_FFoQSI_1__VB-14-M17__bin.20 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M17__bin.28 93.21192053 1.655629139 271 1938765 36.75 9825 SAMN36690336 SRR25395007 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_2__bin.27 DeFilippisF_xxxx__DS_2__bin.27 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus koreensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M17__bin.11 80.19604631 1.326998689 219 2338861 55.96 14468 SAMN36690336 SRR25395007 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M17__bin.10 85.76998051 0.779727096 383 3062712 70.27 13285 SAMN36690336 SRR25395007 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M17__bin.16 85.16057586 0.445736434 330 2712996 69.02 12136 SAMN36690336 SRR25395007 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M17__bin.1 95.625 0.833333333 149 2398492 59.9 24540 SAMN36690336 SRR25395007 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M17__bin.17 73.50543478 0.543478261 142 1298573 36.09 12550 SAMN36690336 SRR25395007 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M17__bin.27 97.6146789 2.217125382 130 2518267 65.6 30712 SAMN36690336 SRR25395007 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M17__bin.24 92.5872093 1.356589147 261 3568504 67.98 23158 SAMN36690336 SRR25395007 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M17__bin.19 53.05068226 0.584795322 557 1777495 66.22 3360 SAMN36690336 SRR25395007 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.48 MASTER_WP4_FFoQSI_1__VB-14-M17__bin.19 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M17__bin.7 97.26775956 3.479052823 131 2676760 37.73 37775 SAMN36690336 SRR25395007 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-06-AD__bin.9 MASTER_WP4_FFoQSI_1__VB-06-AD__bin.9 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;NA NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M18__bin.20 97.77777778 2.083333333 161 2616990 32.95 29093 SAMN36690337 SRR25395006 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M18__bin.32 81.01744186 2.519379845 382 3101618 63.64 10924 SAMN36690337 SRR25395006 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_FFoQSI_1__KM-4G__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M18__bin.17 57.17047759 0.660792952 167 1455170 55.53 9429 SAMN36690337 SRR25395006 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 MASTER_WP4_FFoQSI_2__VB05-25__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M18__bin.39 79.27875244 0 121 1297550 54.88 14422 SAMN36690337 SRR25395006 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M18__bin.35 89.47661948 1.67042042 363 2725284 67.1 9943 SAMN36690337 SRR25395006 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M18__bin.60 86.7816092 1.340996169 37 1833375 41.89 81061 SAMN36690337 SRR25395006 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KumarJ_2019__SRS4562503__bin.9 MASTER_WP4_FFoQSI_1__VB-14-M18__bin.60 Bacillota;Bacilli;Staphylococcales;Salinicoccaceae;Jeotgalicoccus Jeotgalicoccus nanhaiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M18__bin.5 88.30532213 1.260504202 161 1980439 59.14 19161 SAMN36690337 SRR25395006 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M18__bin.59 55.17241379 3.448275862 142 1232470 36.55 10358 SAMN36690337 SRR25395006 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2239_73323__bin.20 MASTER_WP4_FFoQSI_1__VB-14-M18__bin.59 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M18__bin.31 62.06896552 0 170 1081147 36.31 7432 SAMN36690337 SRR25395006 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M18__bin.23 77.1778069 2.167977283 189 1919730 55.68 12670 SAMN36690337 SRR25395006 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M18__bin.11 93.07992203 2.826510721 344 3311699 70.17 15038 SAMN36690337 SRR25395006 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M18__bin.19 86.67635659 4.941860465 286 2580460 68.97 14291 SAMN36690337 SRR25395006 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M18__bin.44 51.58333333 0 162 994006 60.53 6826 SAMN36690337 SRR25395006 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M18__bin.26 95.55555556 1.666666667 327 3035815 73.02 13665 SAMN36690337 SRR25395006 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M18__bin.29 85.27131783 0.581395349 244 4084232 69.26 33883 SAMN36690337 SRR25395006 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M18__bin.41 86.47171254 1.867627785 245 2033767 65.81 12045 SAMN36690337 SRR25395006 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M18__bin.27 72.03488372 1.453488372 485 2179626 65.88 5408 SAMN36690337 SRR25395006 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 MASTER_WP4_FFoQSI_1__VB-14-M18__bin.27 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M18__bin.46 85.36821705 0.968992248 250 2485269 68.48 15546 SAMN36690337 SRR25395006 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M18__bin.47 65.32046657 4.04040404 614 1797524 69.01 3124 SAMN36690337 SRR25395006 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.1 MASTER_WP4_FFoQSI_1__VB-14-M18__bin.47 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M18__bin.50 99.30232558 1.162790698 89 3765524 67.58 71391 SAMN36690337 SRR25395006 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.39 MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.39 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;CALKWS01 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M18__bin.8 96.15384615 1.048951049 209 2418585 29.72 22131 SAMN36690337 SRR25395006 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-30__bin.23 MASTER_WP4_FFoQSI_3__VB13-30__bin.23 Bacillota;Clostridia;Tissierellales;Tissierellaceae;Tissierella_A NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14-M18__bin.1 77.63157895 4.678362573 900 4366051 69.1 6037 SAMN36690337 SRR25395006 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-BD__bin.9 MASTER_WP4_FFoQSI_1__VB-14-M18__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14D__bin.26 95.41666667 2.546296296 391 2594731 32.81 9160 SAMN36690592 SRR25395318 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14D__bin.37 80.26439646 0.872093023 446 2470268 63.52 6980 SAMN36690592 SRR25395318 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14D__bin.3 83.62573099 0.438596491 183 1592043 54.92 11117 SAMN36690592 SRR25395318 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14D__bin.35 86.56789639 0.807152249 223 2394818 43.99 15081 SAMN36690592 SRR25395318 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy5_bin.lin.34 MASTER_WP4_FFoQSI_3__VB07-30__bin.42 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14D__bin.48 99.13793103 0.75811359 114 3309911 55.25 52078 SAMN36690592 SRR25395318 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14D__bin.1 94.27927928 1.126126126 281 2604204 67.19 13635 SAMN36690592 SRR25395318 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14D__bin.63 68.04093567 0.292397661 222 2357906 71.2 15513 SAMN36690592 SRR25395318 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-29__bin.23 MASTER_WP4_FFoQSI_2__VB11-29__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp030457675 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14D__bin.28 91.2464986 1.260504202 144 2162381 59.16 25491 SAMN36690592 SRR25395318 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14D__bin.19 88.30021908 1.4571949 207 1477974 36.25 10615 SAMN36690592 SRR25395318 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14D__bin.62 79.8245614 1.754385965 343 2823865 70.25 12430 SAMN36690592 SRR25395318 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14D__bin.47 92.43055556 2.083333333 238 2495851 59.77 13443 SAMN36690592 SRR25395318 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14D__bin.15 96.38888889 2.361111111 255 2929920 73.21 18288 SAMN36690592 SRR25395318 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14D__bin.58 85.27131783 2.906976744 421 3890712 69.33 15187 SAMN36690592 SRR25395318 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14D__bin.31 91.04526426 1.373626374 879 6164792 69.21 9926 SAMN36690592 SRR25395318 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.28 MASTER_WP4_FFoQSI_1__KM-2D__bin.28 Actinomycetota;Actinomycetes;Streptosporangiales;Streptosporangiaceae;Nocardiopsis Nocardiopsis sp900143625 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14D__bin.8 83.29510703 1.032110092 247 1922142 65.82 12124 SAMN36690592 SRR25395318 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14D__bin.60 79.6996124 4.670542636 596 2518095 65.66 5150 SAMN36690592 SRR25395318 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 MASTER_WP4_FFoQSI_1__VB-14D__bin.60 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14D__bin.56 95.43604651 2.034883721 281 5069909 64.38 36915 SAMN36690592 SRR25395318 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2020__ERS3466771__bin.3 WalshAM_2020__ERS3466771__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745485 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14D__bin.44 96.49122807 0.66833751 140 3163409 65.58 48679 SAMN36690592 SRR25395318 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.48 MASTER_WP4_FFoQSI_3__VB13-29__bin.48 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14D__bin.6 96.28026295 2.260702261 232 2705346 68.78 20034 SAMN36690592 SRR25395318 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.1 MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14D__bin.53 71.30555556 1.666666667 696 2513618 71.54 4366 SAMN36690592 SRR25395318 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-BD__bin.19 MASTER_WP4_FFoQSI_1__VB-14D__bin.53 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JAZGOL01 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14D__bin.9 89.0990991 1.081081081 242 2567074 47.01 13661 SAMN36690592 SRR25395318 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M15__bin.1 MASTER_WP4_FFoQSI_1__VB-16-M15__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Aeromonadaceae;Oceanimonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14D__bin.49 98.54651163 0 141 3818626 67.44 52096 SAMN36690592 SRR25395318 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.39 MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.39 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;CALKWS01 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14D__bin.23 92.60060927 0.328683662 80 2005028 46.33 32589 SAMN36690592 SRR25395318 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB14-F-AR__bin.13 MASTER_WP4_FFoQSI_1__VB14-F-AR__bin.13 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Idiomarina NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-14D__bin.5 97.84722222 2.5 113 2824004 60.97 46816 SAMN36690592 SRR25395318 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.5 MASTER_WP4_FFoQSI_1__VB-14D__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-AG__bin.28 91.61917563 4.166666667 436 2568249 32.59 8230 SAMN36690338 SRR25395005 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-AG__bin.4 81.24307863 2.325581395 627 3264111 63.32 6560 SAMN36690338 SRR25395005 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-AG__bin.3 66.2958884 2.246696035 272 1629361 55.75 7178 SAMN36690338 SRR25395005 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-AG__bin.27 93.95711501 0 74 1875331 55.17 88204 SAMN36690338 SRR25395005 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-AG__bin.1 99.35344828 1.867816092 153 3417660 55.35 39522 SAMN36690338 SRR25395005 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-AG__bin.22 87.8003003 3.040540541 509 2709582 67.03 6640 SAMN36690338 SRR25395005 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-AG__bin.17 96.42857143 0 77 2487790 59.02 67036 SAMN36690338 SRR25395005 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-AG__bin.41 82.99614306 4.324953477 263 1532202 38.09 7196 SAMN36690338 SRR25395005 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2239_73323__bin.20 MASTER_WP4_FFoQSI_1__VB-06-BG__bin.35 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-AG__bin.33 67.93103448 0.862068966 200 1397458 36.46 9512 SAMN36690338 SRR25395005 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-AG__bin.6 64.49432066 1.059414592 195 1479722 55.81 8649 SAMN36690338 SRR25395005 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-AG__bin.9 73.00194932 3.615984405 866 2951468 69.35 3846 SAMN36690338 SRR25395005 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_1__VB-15-AG__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-AG__bin.30 86.875 1.25 267 2269978 59.94 11602 SAMN36690338 SRR25395005 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-AG__bin.16 89.67391304 4.483695652 196 2233949 35.92 16574 SAMN36690338 SRR25395005 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-AG__bin.2 61.85077519 4.748062016 979 3554904 68.1 4100 SAMN36690338 SRR25395005 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 MASTER_WP4_FFoQSI_1__VB-15-AG__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-AG__bin.38 88.6025557 3.455657492 410 2360232 65.54 7958 SAMN36690338 SRR25395005 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-AG__bin.14 93.64942529 0.915948276 100 3390547 54.04 74423 SAMN36690338 SRR25395005 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-AG__bin.44 96.44808743 3.843351548 167 2728160 37.55 29780 SAMN36690338 SRR25395005 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-06-AD__bin.9 MASTER_WP4_FFoQSI_1__VB-06-AD__bin.9 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;NA NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-AG__bin.42 71.4 0.6 1857 28995925 57.8 23451 SAMN36690338 SRR25395005 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-BD__bin.31 98.33333333 0.972222222 246 2708151 32.71 17051 SAMN36690339 SRR25394848 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-BD__bin.27 59.80490875 0.368855325 207 1514819 55.65 8153 SAMN36690339 SRR25394848 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-BD__bin.7 94.54191033 0 94 1870290 55.31 81677 SAMN36690339 SRR25394848 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-BD__bin.2 96.02102102 1.501501502 261 2703922 67.21 15988 SAMN36690339 SRR25394848 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-BD__bin.8 98.52941176 0 46 2533432 58.96 107630 SAMN36690339 SRR25394848 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-BD__bin.34 79.27152318 2.196467991 365 1770195 36.7 5896 SAMN36690339 SRR25394848 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_2__bin.27 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.9 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus koreensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-BD__bin.30 72.93086501 0.557011796 214 1866356 55.92 10941 SAMN36690339 SRR25394848 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-BD__bin.18 88.76914508 1.851851852 477 3817068 70.03 11708 SAMN36690339 SRR25394848 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_1__VB-15-BD__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-BD__bin.39 86.83554817 1.065891473 304 2744467 68.76 13352 SAMN36690339 SRR25394848 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-BD__bin.41 97.29166667 0.416666667 117 2607478 59.67 32327 SAMN36690339 SRR25394848 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-BD__bin.56 94.44444444 0.416666667 430 2808534 73.18 9227 SAMN36690339 SRR25394848 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-BD__bin.23 88.24889258 2.034883721 428 4005794 69.39 15744 SAMN36690339 SRR25394848 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-BD__bin.32 77.18272171 0.554281346 247 1755825 65.97 10595 SAMN36690339 SRR25394848 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-BD__bin.19 94.62209302 0.19379845 196 2856232 68.47 26234 SAMN36690339 SRR25394848 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-BD__bin.47 54.62753436 3.872053872 660 1839937 68.39 2967 SAMN36690339 SRR25394848 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.1 MASTER_WP4_FFoQSI_1__VB-15-BD__bin.47 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-BD__bin.9 85.65302144 2.631578947 487 3578372 69.46 11166 SAMN36690339 SRR25394848 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-BD__bin.9 MASTER_WP4_FFoQSI_1__VB-15-BD__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-BD__bin.54 94.03914591 1.613285884 512 6335967 68.08 19692 SAMN36690339 SRR25394848 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2020__ERS3466771__bin.2 WalshAM_2020__ERS3466771__bin.2 Actinomycetota;Actinomycetes;Streptomycetales;Streptomycetaceae;Streptomyces NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-BD__bin.16 89.5 0.1 921 26170054 47.24 41973 SAMN36690339 SRR25394848 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-BD__bin.16 MASTER_WP4_FFoQSI_1__VB-15-BD__bin.16 Ascomycota;Eurotiomycetes;Onygenales;Ajellomycetaceae;unknown unknown cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-BD__bin.28 59.2 0 1877 15852856 47.98 9675 SAMN36690339 SRR25394848 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14-AD__bin.11 MASTER_WP4_FFoQSI_1__VB-14-AD__bin.11 Ascomycota;Eurotiomycetes;Onygenales;Arachnomycetaceae;unknown unknown cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-BD__bin.26 87.6 0.3 244 27261811 58.51 187555 SAMN36690339 SRR25394848 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M10__bin.10 88.49902534 1.959064327 495 3210817 70.58 9406 SAMN36690340 SRR25394847 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.10 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M10__bin.52 80.12236907 1.138032305 188 2142244 55.74 13970 SAMN36690340 SRR25394847 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M10__bin.44 95.71150097 0 58 1972386 55.17 63459 SAMN36690340 SRR25394847 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M10__bin.54 82.59653541 0.776627219 209 2213613 44.05 12253 SAMN36690340 SRR25394847 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy5_bin.lin.34 MASTER_WP4_FFoQSI_3__VB07-30__bin.42 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M10__bin.35 94.82758621 0.506138976 144 3186486 55.26 32626 SAMN36690340 SRR25394847 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M10__bin.34 98.53603604 1.351351351 114 2886474 67.11 41483 SAMN36690340 SRR25394847 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M10__bin.51 50 0.862068966 98 642449 33.16 7941 SAMN36690340 SRR25394847 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M10__bin.17 98.94957983 0 53 2522617 59 75576 SAMN36690340 SRR25394847 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M10__bin.9 97.01986755 0.662251656 217 2597067 36.4 18518 SAMN36690340 SRR25394847 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_2__bin.27 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.9 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus koreensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M10__bin.13 51.72413793 0.862068966 75 861801 54.75 14400 SAMN36690340 SRR25394847 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M10__bin.28 79.08361019 0.290697674 206 2219090 68.96 14240 SAMN36690340 SRR25394847 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M10__bin.49 94.72222222 0.416666667 268 2898860 73.17 16771 SAMN36690340 SRR25394847 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 95.65217391 1.630434783 61 2341245 35.75 59233 SAMN36690340 SRR25394847 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M10__bin.46 78.87596899 0.581395349 290 3452626 69.51 25303 SAMN36690340 SRR25394847 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M10__bin.6 67.61119833 1.373626374 1201 4414055 69.53 4034 SAMN36690340 SRR25394847 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.28 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.6 Actinomycetota;Actinomycetes;Streptosporangiales;Streptosporangiaceae;Nocardiopsis Nocardiopsis sp900143625 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M10__bin.31 85.31345566 1.574923547 265 1927111 65.86 9683 SAMN36690340 SRR25394847 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M10__bin.32 58.89534884 3.197674419 442 2014844 66.27 5283 SAMN36690340 SRR25394847 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.32 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M10__bin.19 93.02325581 0 235 3048857 68.39 23164 SAMN36690340 SRR25394847 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M10__bin.25 97.07912458 4.765712682 270 2839570 69.29 16819 SAMN36690340 SRR25394847 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.36 MASTER_WP4_FFoQSI_1__VB-03-M6__bin.10 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium stercoravium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M10__bin.12 99.54954955 1.711711712 50 3320778 71.37 132903 SAMN36690340 SRR25394847 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.12 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Dermatophilaceae;Janibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M10__bin.27 96.36279926 4.051565378 141 2661921 31.82 37162 SAMN36690340 SRR25394847 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M11__bin.27 MASTER_WP4_FFoQSI_1__VB-15-M11__bin.27 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Mammaliicoccus NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M10__bin.14 99.70760234 0.14619883 276 4004135 69.62 32347 SAMN36690340 SRR25394847 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.14 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M10__bin.16 70.40229885 3.448275862 1218 5024961 68.16 4696 SAMN36690340 SRR25394847 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2020__ERS3466771__bin.2 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.16 Actinomycetota;Actinomycetes;Streptomycetales;Streptomycetaceae;Streptomyces NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M10__bin.4 86.9 0.5 187 27472937 58.43 227369 SAMN36690340 SRR25394847 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M11__bin.2 77.18992248 1.453488372 442 2367944 63.47 6378 SAMN36690341 SRR25394846 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M11__bin.3 67.19646799 4.470198675 406 1500951 35.72 4066 SAMN36690341 SRR25394846 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 MASTER_WP4_FFoQSI_1__VB-15-M11__bin.3 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M11__bin.12 64.02594224 0.697503671 207 1547096 55.72 8729 SAMN36690341 SRR25394846 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 MASTER_WP4_FFoQSI_2__VB05-25__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M11__bin.40 90.48732943 0 81 1647494 55.08 48983 SAMN36690341 SRR25394846 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M11__bin.16 66.91924067 3.123123123 565 2000911 66.34 3855 SAMN36690341 SRR25394846 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_FFoQSI_1__VB-15-M11__bin.16 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M11__bin.30 97.26890756 0 101 2468698 59.05 37013 SAMN36690341 SRR25394846 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M11__bin.14 81.32117809 2.367941712 184 1323701 36.41 9660 SAMN36690341 SRR25394846 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M11__bin.22 98.67549669 2.649006623 229 2796951 36.39 19170 SAMN36690341 SRR25394846 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_2__bin.27 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.9 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus koreensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M11__bin.37 63.86577108 0.524246396 164 1332988 55.59 9858 SAMN36690341 SRR25394846 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M11__bin.32 95.0297619 0 132 2524448 59.74 30333 SAMN36690341 SRR25394846 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M11__bin.33 92.11956522 1.630434783 124 2164404 35.91 27114 SAMN36690341 SRR25394846 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M11__bin.23 76.64045435 3.869047619 460 1975331 65.01 4809 SAMN36690341 SRR25394846 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__VB-15-M11__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M11__bin.34 72.75193798 4.554263566 703 2669518 65.45 4354 SAMN36690341 SRR25394846 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 MASTER_WP4_FFoQSI_1__VB-15-M11__bin.34 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M11__bin.21 81.57253599 4.651162791 925 4914216 63.98 6926 SAMN36690341 SRR25394846 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2020__ERS3466771__bin.3 MASTER_WP4_FFoQSI_1__VB-15-M11__bin.21 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745485 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M11__bin.27 95.5801105 2.209944751 66 2617539 31.87 111450 SAMN36690341 SRR25394846 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M11__bin.27 MASTER_WP4_FFoQSI_1__VB-15-M11__bin.27 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Mammaliicoccus NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M11__bin.39 80 0.5 1130 29606112 58.01 40354 SAMN36690341 SRR25394846 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M12__bin.10 94.49074074 2.777777778 364 2527352 32.86 9177 SAMN36690342 SRR25394845 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M12__bin.1 81.25 1.889534884 542 2839728 63.47 6513 SAMN36690342 SRR25394845 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M12__bin.9 89.01982379 1.864904552 239 2431046 55.65 14423 SAMN36690342 SRR25394845 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M12__bin.7 93.31384016 0 120 1800346 55.14 35286 SAMN36690342 SRR25394845 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 97.81420765 1.821493625 97 2090656 36.45 45125 SAMN36690342 SRR25394845 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M12__bin.27 99.33774834 3.642384106 126 2538676 36.43 34772 SAMN36690342 SRR25394845 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_2__bin.27 DeFilippisF_xxxx__DS_2__bin.27 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus koreensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M12__bin.3 64.836173 1.174093491 213 1577154 55.77 8953 SAMN36690342 SRR25394845 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M12__bin.4 92.66304348 2.173913043 76 2258638 35.77 48506 SAMN36690342 SRR25394845 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M12__bin.12 65.69767442 3.837209302 845 2775747 64.45 3422 SAMN36690342 SRR25394845 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M12__bin.22 81.4 0.6 1201 30272065 57.93 38870 SAMN36690342 SRR25394845 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M9__bin.56 53.60501567 0 217 918935 33.27 4747 SAMN36690343 SRR25394843 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M9__bin.47 76.78571429 2.906976744 442 2481896 63.49 6736 SAMN36690343 SRR25394843 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M9__bin.17 89.18128655 2.53411306 544 3583346 70.4 9333 SAMN36690343 SRR25394843 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.10 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M9__bin.8 95.90643275 0 67 1982724 55.25 74607 SAMN36690343 SRR25394843 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M9__bin.39 68.10344828 0 233 2301174 43.85 12071 SAMN36690343 SRR25394843 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy5_bin.lin.34 MASTER_WP4_FFoQSI_3__VB07-30__bin.42 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M9__bin.15 50.39250261 0.862068966 101 1363256 56.11 19538 SAMN36690343 SRR25394843 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M9__bin.55 97.69144144 1.351351351 167 2910321 67.07 29289 SAMN36690343 SRR25394843 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M9__bin.22 96.42857143 0 82 2445878 59.03 70735 SAMN36690343 SRR25394843 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M9__bin.50 96.02649007 2.98013245 178 2208455 36.6 19144 SAMN36690343 SRR25394843 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_2__bin.27 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.9 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus koreensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M9__bin.45 50.31347962 0 83 754865 54.44 11460 SAMN36690343 SRR25394843 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M9__bin.13 84.2192691 1.162790698 313 2427426 68.83 11124 SAMN36690343 SRR25394843 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M9__bin.29 98.95833333 1.666666667 89 2718730 59.53 56594 SAMN36690343 SRR25394843 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M9__bin.36 95.27777778 0.952380952 322 2763090 73.32 13766 SAMN36690343 SRR25394843 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M9__bin.53 91.66666667 1.630434783 186 2288511 35.65 18534 SAMN36690343 SRR25394843 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M9__bin.40 77.22868217 0.290697674 315 3457999 69.49 21106 SAMN36690343 SRR25394843 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M9__bin.27 78.73088685 1.930428135 314 1931116 65.83 8262 SAMN36690343 SRR25394843 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M9__bin.12 87.9748062 4.069767442 621 2992116 65.57 6019 SAMN36690343 SRR25394843 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 MASTER_WP4_FFoQSI_1__VB-15-M9__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M9__bin.23 95.58139535 3.003875969 305 5286758 63.83 41790 SAMN36690343 SRR25394843 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2020__ERS3466771__bin.3 WalshAM_2020__ERS3466771__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745485 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M9__bin.2 94.67054264 0.19379845 263 3069961 68.42 22085 SAMN36690343 SRR25394843 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M9__bin.5 94.15204678 0.14619883 180 3978696 69.62 51725 SAMN36690343 SRR25394843 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.14 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M9__bin.42 73.44827586 0 124 2336213 61.23 32000 SAMN36690343 SRR25394843 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-30__bin.19 MASTER_WP4_FFoQSI_2__VB11-30__bin.19 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella sp030457605 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-15-M9__bin.49 50.3 0.4 3684 20434556 57.73 6207 SAMN36690343 SRR25394843 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-AG__bin.46 95.27777778 1.666666667 230 2706709 32.83 20658 SAMN36690344 SRR25394842 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-AG__bin.10 74.63178295 0.19379845 368 2243447 63.43 7778 SAMN36690344 SRR25394842 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-AG__bin.30 92.16374269 3.50877193 412 4030915 70.48 14793 SAMN36690344 SRR25394842 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 MASTER_WP4_FFoQSI_2__VB16-29__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-AG__bin.12 84.69785575 0 117 1532694 55.1 20193 SAMN36690344 SRR25394842 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-AG__bin.22 94.78114478 1.178451178 181 2131440 65.86 22034 SAMN36690344 SRR25394842 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-AG__bin.28 88.83417864 0.961538462 227 2389274 43.98 14412 SAMN36690344 SRR25394842 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy5_bin.lin.34 MASTER_WP4_FFoQSI_3__VB07-30__bin.42 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-AG__bin.36 74.48275862 0 264 3087052 53.64 14414 SAMN36690344 SRR25394842 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.20 MASTER_WP4_FFoQSI_1__VB-16-BD__bin.54 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-AG__bin.16 60.34482759 3.448275862 161 2345108 55.41 23034 SAMN36690344 SRR25394842 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-AG__bin.48 83.24753325 0.563063063 356 2759763 69.43 12010 SAMN36690344 SRR25394842 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_2__P2570__bin.32 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-AG__bin.49 91.81681682 0.675675676 305 2483569 67.24 12041 SAMN36690344 SRR25394842 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-AG__bin.57 86.88387636 2.631578947 369 2797984 71.01 12203 SAMN36690344 SRR25394842 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-29__bin.23 MASTER_WP4_FFoQSI_2__VB11-29__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp030457675 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-AG__bin.5 92.01680672 0.420168067 148 2280559 59.11 23683 SAMN36690344 SRR25394842 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-AG__bin.17 87.60343482 0.72859745 165 1419967 36.37 12598 SAMN36690344 SRR25394842 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-AG__bin.19 95.07042254 0.176056338 105 2382656 28.33 38387 SAMN36690344 SRR25394842 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB07-30__bin.41 MASTER_WP4_FFoQSI_3__VB07-30__bin.41 Bacillota;Clostridia;Tissierellales;SIT17;Anaeromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-AG__bin.15 53.84010485 0.638925295 124 1241634 55.17 11688 SAMN36690344 SRR25394842 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-AG__bin.9 85.1744186 0.581395349 285 2418186 69.1 12197 SAMN36690344 SRR25394842 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-AG__bin.47 76.38888889 0.202380952 264 1629285 60.18 6868 SAMN36690344 SRR25394842 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-AG__bin.53 95.13888889 1.25 282 2922370 73.17 16455 SAMN36690344 SRR25394842 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-AG__bin.32 87.58838384 2.306615943 213 3186867 68.02 28550 SAMN36690344 SRR25394842 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-28__bin.25 MASTER_WP4_FFoQSI_2__VB04-29__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium sp900163665 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-AG__bin.44 96.89922481 0.581395349 271 4312668 69.25 36257 SAMN36690344 SRR25394842 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-AG__bin.43 97.08333333 1.666666667 312 3418247 72.31 18985 SAMN36690344 SRR25394842 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-AD__bin.33 MASTER_WP4_FFoQSI_1__VB-05-AD__bin.33 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 JB111 sp900163555 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-AG__bin.14 98.70466321 2.07253886 84 3614013 66.31 77475 SAMN36690344 SRR25394842 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-09-M8__bin.3 MASTER_WP4_FFoQSI_1__VB-16-BD__bin.33 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Avipropionibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-AG__bin.52 76.22870249 2.844036697 733 4012844 65.95 6980 SAMN36690344 SRR25394842 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;CmP2 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-AG__bin.50 90.29434251 2.274464832 225 2061618 65.78 13369 SAMN36690344 SRR25394842 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-AG__bin.27 98.37209302 0.639534884 157 4502686 64.45 52327 SAMN36690344 SRR25394842 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2020__ERS3466771__bin.3 WalshAM_2020__ERS3466771__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745485 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-AG__bin.45 98.24561404 2.046783626 44 3042010 65.46 210285 SAMN36690344 SRR25394842 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.48 MASTER_WP4_FFoQSI_3__VB13-29__bin.48 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-AG__bin.21 87.71317829 2.519379845 450 2817763 71.43 8271 SAMN36690344 SRR25394842 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-BD__bin.19 MASTER_WP4_FFoQSI_1__VB-05-BD__bin.19 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JAZGOL01 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-AG__bin.3 91 0.4 514 30144048 58.16 95573 SAMN36690344 SRR25394842 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.47 97.57575758 2.934587814 233 2879962 33.12 18105 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.28 76.03682171 1.162790698 364 2220708 63.38 7703 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.52 61.79882526 0.146842878 219 1587409 55.61 8712 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.71 92.46632997 0.589225589 202 2071596 65.94 17307 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.24 89.78598782 0.717338217 238 2376642 43.99 12925 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy5_bin.lin.34 MASTER_WP4_FFoQSI_3__VB07-30__bin.42 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.54 83.10344828 0.862068966 184 3498762 53.61 29651 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.20 MASTER_WP4_FFoQSI_1__VB-16-BD__bin.54 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.46 73.9831161 1.091954023 189 2291017 55.55 17952 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.22 92.06349206 2.857142857 173 3209264 43.53 36372 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2G__bin.45 MASTER_WP4_FFoQSI_1__KM-2G__bin.45 Bacteroidota;Bacteroidia;Sphingobacteriales;Sphingobacteriaceae;Sphingobacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.38 94.36936937 1.351351351 303 2597513 67.2 11858 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.70 70.68965517 0 326 2484714 70.97 10754 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-29__bin.23 MASTER_WP4_FFoQSI_2__VB11-29__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp030457675 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.14 63.27586207 0 318 3173057 54.37 13084 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811293__bin.2 MAG_642 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella citrativorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.16 97.12885154 0 167 2329472 59.17 19378 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.20 84.75409836 0.591985428 164 1519177 36.44 13064 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.40 85.33597418 1.408450704 508 2180234 28.31 5304 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB07-30__bin.41 MASTER_WP4_FFoQSI_3__VB07-30__bin.41 Bacillota;Clostridia;Tissierellales;SIT17;Anaeromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.64 84.17540411 1.3652249890000001 192 2368547 55.95 17126 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.69 89.72868217 1.162790698 294 2621043 69 14214 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.6 93.81944444 1.666666667 195 2428867 59.87 16746 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.43 95.93023256 3.246124031 274 3042037 73.07 17611 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.72 90.78282828 1.856661857 265 3232381 68.04 26884 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-28__bin.25 MASTER_WP4_FFoQSI_2__VB04-29__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium sp900163665 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.56 96.60852713 0.581395349 230 4377120 69.22 46875 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.31 91.06944444 4.166666667 461 3418006 72.23 10589 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-AD__bin.33 MASTER_WP4_FFoQSI_1__VB-05-AD__bin.33 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 JB111 sp900163555 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.58 91.56345566 2.886085627 332 2761562 64.18 12391 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB03-30__bin.18 MASTER_WP4_FFoQSI_1__VB-16-BD__bin.58 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.49 98.70865289 3.473630832 64 3914500 54.06 129540 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-09-BD__bin.29 MASTER_WP4_FFoQSI_1__VB-09-BD__bin.29 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.33 97.32297064 1.208981002 94 3615178 66.29 69468 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-09-M8__bin.3 MASTER_WP4_FFoQSI_1__VB-16-BD__bin.33 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Avipropionibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.26 94.50549451 0.549450549 604 6122659 69.25 19795 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.28 MASTER_WP4_FFoQSI_1__KM-2D__bin.28 Actinomycetota;Actinomycetes;Streptosporangiales;Streptosporangiaceae;Nocardiopsis Nocardiopsis sp900143625 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.35 90.8295107 1.146788991 242 2173128 65.77 13314 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.2 97.96511628 2.61627907 218 4803495 64.14 48361 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2020__ERS3466771__bin.3 WalshAM_2020__ERS3466771__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745485 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.8 94.73684211 1.169590643 42 2721118 65.75 124988 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.48 MASTER_WP4_FFoQSI_3__VB13-29__bin.48 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.4 62.72286822 1.162790698 621 2178104 71.53 3936 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-BD__bin.19 MASTER_WP4_FFoQSI_1__VB-05-BD__bin.19 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JAZGOL01 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.1 54.28849903 0 96 1293253 55.61 19362 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.13 93.84567587 2.53544597 708 6076383 68.01 12379 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2020__ERS3466771__bin.2 WalshAM_2020__ERS3466771__bin.2 Actinomycetota;Actinomycetes;Streptomycetales;Streptomycetaceae;Streptomyces NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.61 87.2347952 1.588451438 309 2765276 64.54 11723 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-BD__bin.61 MASTER_WP4_FFoQSI_1__VB-16-BD__bin.61 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Halomonas Halomonas sp947490095 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.18 88.6 0.6 237 30169460 58.05 197526 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-BD__bin.41 70.3 0.3 2477 19607109 56.94 9085 SAMN36690345 SRR25394841 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-BD__bin.41 MASTER_WP4_FFoQSI_1__VB-16-BD__bin.41 Ascomycota;Sordariomycetes;Hypocreales;Bionectriaceae;Hapsidospora unknown cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M13__bin.16 78.28405018 1.851851852 470 2002795 32.8 5097 SAMN36690346 SRR25394840 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M13__bin.4 80.91085271 0 438 2746983 63.39 8258 SAMN36690346 SRR25394840 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M13__bin.7 57.50244738 0.660792952 252 1578802 55.5 7525 SAMN36690346 SRR25394840 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M13__bin.13 62.6705653 0.584795322 107 954188 54.07 13300 SAMN36690346 SRR25394840 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M13__bin.14 71.03956229 1.528379028 481 1741628 65.14 4226 SAMN36690346 SRR25394840 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M13__bin.10 88.15958816 3.127413127 528 2741390 67.41 6629 SAMN36690346 SRR25394840 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.10 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M13__bin.5 74.33290433 3.490990991 629 2239367 66.44 4032 SAMN36690346 SRR25394840 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M13__bin.1 95.49180328 1.59794668 227 2148874 36.53 13799 SAMN36690346 SRR25394840 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Ruoffia Ruoffia tabacinasalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M13__bin.21 96.14647647 2.949644515 229 2080817 36.3 13643 SAMN36690346 SRR25394840 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 95.83060288 0.524246396 61 2848956 56.02 73415 SAMN36690346 SRR25394840 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M13__bin.20 66.80509413 2.044573643 785 2603054 67.33 3575 SAMN36690346 SRR25394840 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M14__bin.18 59.23715651 1.111111111 525 1562817 32.67 3185 SAMN36690347 SRR25394839 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__VB-16-M14__bin.18 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M14__bin.7 88.98255814 3.488372093 543 3267339 63.22 8187 SAMN36690347 SRR25394839 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M14__bin.23 66.89864345 0.80763583 332 1749280 55.76 5994 SAMN36690347 SRR25394839 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M14__bin.11 95.71150097 0.194931774 130 2029127 55.24 27993 SAMN36690347 SRR25394839 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M14__bin.6 67.09616001 1.40291807 472 1734122 64.84 4266 SAMN36690347 SRR25394839 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M14__bin.2 98.36065574 1.366120219 136 2266553 36.44 29817 SAMN36690347 SRR25394839 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Ruoffia Ruoffia tabacinasalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M14__bin.10 76 0.5 2555 30020678 57.81 19159 SAMN36690347 SRR25394839 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M15__bin.26 68.61111111 0.712365591 279 1736657 32.46 8481 SAMN36690348 SRR25394838 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__VB-09-M8__bin.67 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M15__bin.12 50.87719298 0 35 585597 54.08 25724 SAMN36690348 SRR25394838 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M15__bin.24 83.83838384 0.420875421 257 1779195 66.12 10439 SAMN36690348 SRR25394838 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M15__bin.7 95.61496196 0.824175824 254 2702541 43.63 14774 SAMN36690348 SRR25394838 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy5_bin.lin.34 MASTER_WP4_FFoQSI_1__VB-16-M15__bin.7 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M15__bin.36 96.76935429 0.484913793 235 3458785 53.52 21869 SAMN36690348 SRR25394838 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.20 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M15__bin.39 91.3979232 1.415229885 218 2868521 55.37 21278 SAMN36690348 SRR25394838 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M15__bin.14 51.5015015 0.540540541 40 1971589 67.71 79852 SAMN36690348 SRR25394838 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 FalardeauJ_2023__SRR20811223__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M15__bin.43 94.44444444 1.893939394 259 2543350 68.68 15218 SAMN36690348 SRR25394838 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 160 160 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M15__bin.17 94.96996997 0.755040755 327 2530013 67.19 11127 SAMN36690348 SRR25394838 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M15__bin.22 96.72131148 1.912568306 142 2023081 36.41 23245 SAMN36690348 SRR25394838 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Ruoffia Ruoffia tabacinasalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M15__bin.9 87.22500696 1.364522417 289 2763949 70.81 16670 SAMN36690348 SRR25394838 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-29__bin.23 MASTER_WP4_FFoQSI_2__VB11-29__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp030457675 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M15__bin.15 90.00499442 2.9143898 205 1519886 36.52 9575 SAMN36690348 SRR25394838 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M15__bin.28 94.38820423 1.995305164 162 2318503 28.25 25022 SAMN36690348 SRR25394838 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB07-30__bin.41 MASTER_WP4_FFoQSI_3__VB07-30__bin.41 Bacillota;Clostridia;Tissierellales;SIT17;Anaeromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M15__bin.18 96.89922481 2.906976744 226 3679557 68.39 30550 SAMN36690348 SRR25394838 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M15__bin.16 86.73611111 0.833333333 292 2262889 59.89 9362 SAMN36690348 SRR25394838 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M15__bin.2 95.15993266 4.280521667 284 3622620 68.15 26665 SAMN36690348 SRR25394838 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-28__bin.25 MASTER_WP4_FFoQSI_2__VB04-29__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium sp900163665 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M15__bin.5 72.36111111 0 80 2476243 72.05 44758 SAMN36690348 SRR25394838 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-AD__bin.33 MASTER_WP4_FFoQSI_1__VB-16-M15__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 JB111 sp900163555 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M15__bin.1 97.2972973 0 121 2914228 46.93 36099 SAMN36690348 SRR25394838 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M15__bin.1 MASTER_WP4_FFoQSI_1__VB-16-M15__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Aeromonadaceae;Oceanimonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M15__bin.31 98.63547758 0.877192982 48 3572335 70.87 110225 SAMN36690348 SRR25394838 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M15__bin.31 MASTER_WP4_FFoQSI_1__VB-16-M15__bin.31 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Gulosibacter Gulosibacter sp900163695 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M15__bin.27 51.17879592 0.844594595 503 1792446 39.74 3898 SAMN36690348 SRR25394838 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_632 MASTER_WP4_FFoQSI_1__VB-16-M15__bin.27 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M15__bin.29 78.13561682 1.949317739 564 2921567 68.55 6311 SAMN36690348 SRR25394838 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-09-M7__bin.36 MASTER_WP4_FFoQSI_1__VB-09-M7__bin.36 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M15__bin.33 59.48081977 0.887198986 505 1445046 33.56 2999 SAMN36690348 SRR25394838 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.15 MASTER_WP4_FFoQSI_1__VB-16-M15__bin.33 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;Psychroflexus NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M16__bin.23 60.02777778 0.277777778 184 1993629 32.95 16629 SAMN36690349 SRR25394837 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__VB-09-M8__bin.67 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M16__bin.11 76.00083056 2.228682171 395 2598898 63.36 8591 SAMN36690349 SRR25394837 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M16__bin.22 95.71150097 0 62 2037954 55.37 60677 SAMN36690349 SRR25394837 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M16__bin.28 87.54208754 0.462962963 249 1910449 66.11 10730 SAMN36690349 SRR25394837 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M16__bin.9 51.576617830000004 0.549450549 122 1377354 43.79 14765 SAMN36690349 SRR25394837 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy5_bin.lin.34 MASTER_WP4_FFoQSI_1__VB-16-M15__bin.7 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M16__bin.4 96.16294794 0.251436782 151 3580115 53.62 37782 SAMN36690349 SRR25394837 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.20 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M16__bin.33 91.09913793 0.862068966 171 2827311 55.36 26387 SAMN36690349 SRR25394837 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M16__bin.17 95.00750751 0.990990991 231 2781025 67.81 19410 SAMN36690349 SRR25394837 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 FalardeauJ_2023__SRR20811223__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M16__bin.29 98.0359147 0.841750842 228 2559685 68.68 15139 SAMN36690349 SRR25394837 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 160 160 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M16__bin.26 92.19594595 1.051051051 297 2532163 67.23 11599 SAMN36690349 SRR25394837 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 97.81420765 0.819672131 105 2209413 36.46 35440 SAMN36690349 SRR25394837 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Ruoffia Ruoffia tabacinasalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M16__bin.16 92.37816764 0.779727096 312 2985087 70.91 17735 SAMN36690349 SRR25394837 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-29__bin.23 MASTER_WP4_FFoQSI_2__VB11-29__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp030457675 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M16__bin.37 97.1316123 1.615969582 181 3091859 36.01 24334 SAMN36690349 SRR25394837 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We4_bin.full.28 We4_bin.full.28 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;Mesonia Mesonia profundi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M16__bin.12 83.53739098 1.411657559 188 1403997 36.54 9958 SAMN36690349 SRR25394837 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M16__bin.20 95.77464789 0.176056338 116 2308193 28.31 33277 SAMN36690349 SRR25394837 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB07-30__bin.41 MASTER_WP4_FFoQSI_3__VB07-30__bin.41 Bacillota;Clostridia;Tissierellales;SIT17;Anaeromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M16__bin.13 77.60233918 3.996101365 662 3651893 69.81 7244 SAMN36690349 SRR25394837 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.13 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 97.48062016 0.290697674 186 3181059 68.8 28114 SAMN36690349 SRR25394837 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M16__bin.36 97.29166667 0.361111111 174 2429283 59.87 18643 SAMN36690349 SRR25394837 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M16__bin.15 60.08286326 2.651515152 769 2416236 68.48 3379 SAMN36690349 SRR25394837 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-28__bin.25 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.15 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium sp900163665 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M16__bin.35 93.78378378 0.540540541 135 2786968 46.99 30617 SAMN36690349 SRR25394837 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M15__bin.1 MASTER_WP4_FFoQSI_1__VB-16-M15__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Aeromonadaceae;Oceanimonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M16__bin.32 93.84015595 1.461988304 321 3482199 70.81 16453 SAMN36690349 SRR25394837 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M15__bin.31 MASTER_WP4_FFoQSI_1__VB-16-M15__bin.31 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Gulosibacter Gulosibacter sp900163695 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB-16-M16__bin.27 89.30609181 1.996708247 270 3296721 39.75 17812 SAMN36690349 SRR25394837 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_632 MASTER_WP4_FFoQSI_1__VB-09-M7__bin.80 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.36 79.23414447 0.954478708 251 1964037 55.72 9480 SAMN36690586 SRR25395063 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 MASTER_WP4_FFoQSI_2__VB05-25__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.40 99.91582492 0.918273646 40 2509908 65.43 110350 SAMN36690586 SRR25395063 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.14 98.44066937 0.66091954 170 3736814 53.59 38880 SAMN36690586 SRR25395063 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.20 MASTER_WP4_FFoQSI_1__VB-12D__bin.20 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.30 96.76724138 0.969827586 122 3260008 55.44 46761 SAMN36690586 SRR25395063 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.18 95.96724824 3.114478114 190 2702824 68.6 24208 SAMN36690586 SRR25395063 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 160 MASTER_WP4_FFoQSI_2__VB05-30__bin.16 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.9 98.76126126 0.900900901 129 2918258 67.07 41766 SAMN36690586 SRR25395063 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.8 86.11111111 3.759398496 469 3704717 70.8 12147 SAMN36690586 SRR25395063 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-29__bin.23 MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp030457675 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.47 65.78473132 0.581585845 189 1503379 55.78 10819 SAMN36690586 SRR25395063 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.27 82.53411306 0.935672515 347 2581289 70.16 10815 SAMN36690586 SRR25395063 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.31 84.68992248 3.197674419 330 2390792 69.09 9715 SAMN36690586 SRR25395063 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.19 75.06944444 0 337 1824948 60.15 6354 SAMN36690586 SRR25395063 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.20 97.22222222 2.083333333 384 3153467 73.06 11811 SAMN36690586 SRR25395063 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.25 80.92396617 1.729249012 230 1788377 35.92 12272 SAMN36690586 SRR25395063 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.44 90.74923547 1.834862385 50 3049406 65.38 129959 SAMN36690586 SRR25395063 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;CmP2 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.7 91.89984709 2.236238532 244 2369596 65.62 15951 SAMN36690586 SRR25395063 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.43 86.7248062 3.197674419 271 2933385 68.04 21214 SAMN36690586 SRR25395063 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.1 98.20426487 0.336700337 82 2890061 68.58 88785 SAMN36690586 SRR25395063 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.1 MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.11 96.49122807 0.14619883 92 3367715 60.68 63108 SAMN36690586 SRR25395063 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.11 MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Gulosibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-BR__bin.25 94.16666667 1.851851852 290 2545315 32.97 12480 SAMN36690587 SRR25395062 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-BR__bin.50 95.02923977 3.567251462 550 3727220 70.51 9791 SAMN36690587 SRR25395062 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.10 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-BR__bin.49 98.30884604 0.168350168 35 2453513 65.55 110350 SAMN36690587 SRR25395062 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-BR__bin.31 91.89168196 0.754310345 176 3300249 53.59 29730 SAMN36690587 SRR25395062 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.20 MASTER_WP4_FFoQSI_1__VB-12D__bin.20 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-BR__bin.39 96.18534483 0.646551724 124 3161382 55.23 46114 SAMN36690587 SRR25395062 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-BR__bin.35 95.10135135 1.126126126 147 2856535 67.08 28225 SAMN36690587 SRR25395062 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-BR__bin.17 68.26018809 3.448275862 201 1839406 36.29 11672 SAMN36690587 SRR25395062 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-BR__bin.38 95.07042254 2.288732394 376 2685769 28.5 11650 SAMN36690587 SRR25395062 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB07-30__bin.41 MASTER_WP4_FFoQSI_3__VB07-30__bin.41 Bacillota;Clostridia;Tissierellales;SIT17;Anaeromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-BR__bin.4 54.62382445 0 77 840721 54.67 16207 SAMN36690587 SRR25395062 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-BR__bin.43 80.91617934 0 318 2392123 70.31 11240 SAMN36690587 SRR25395062 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-BR__bin.29 78.40531561 3.391472868 318 2353339 69.18 10293 SAMN36690587 SRR25395062 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-BR__bin.30 62.71825397 0 250 1636400 60.18 7664 SAMN36690587 SRR25395062 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-BR__bin.41 90.41666667 1.888888889 446 2971466 72.99 9266 SAMN36690587 SRR25395062 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-BR__bin.16 64.7864072 1.222826087 174 1353696 35.89 10445 SAMN36690587 SRR25395062 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-BR__bin.48 91.66666667 0.917431193 42 3310767 65.35 153128 SAMN36690587 SRR25395062 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;CmP2 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-BR__bin.15 88.65607252 0.879204893 206 2265358 65.7 15998 SAMN36690587 SRR25395062 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-BR__bin.6 78.03030303 0.699300699 123 1337418 32.28 21226 SAMN36690587 SRR25395062 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-5G__bin.38 MASTER_WP4_FFoQSI_1__KM-5G__bin.38 Bacillota;Clostridia;Tissierellales;Tissierellaceae;Tissierella_A NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-BR__bin.18 86.87015504 1.937984496 259 2807876 68.28 20926 SAMN36690587 SRR25395062 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-BR__bin.32 92.30769231 2.097902098 145 2210426 29.83 26755 SAMN36690587 SRR25395062 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-30__bin.23 MASTER_WP4_FFoQSI_3__VB13-30__bin.23 Bacillota;Clostridia;Tissierellales;Tissierellaceae;Tissierella_A NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-BR__bin.37 99.44751381 3.17679558 223 3042134 32.66 25052 SAMN36690587 SRR25395062 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB12-F-BR__bin.37 MASTER_WP4_FFoQSI_1__VB12-F-BR__bin.37 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus Vagococcus carniphilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB12-F-BR__bin.28 89.4 0.4 1279 30397301 58.1 33930 SAMN36690587 SRR25395062 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-AR__bin.27 94.16666667 1.406810036 319 2420153 32.86 11494 SAMN36690595 SRR25395314 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-AR__bin.43 79.46982281 0.484496124 398 2415408 63.52 7686 SAMN36690595 SRR25395314 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-AR__bin.12 90.74074074 0.292397661 170 1704761 55.06 14073 SAMN36690595 SRR25395314 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-AR__bin.37 84.98012061 0.305250305 210 2453503 43.88 13901 SAMN36690595 SRR25395314 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy5_bin.lin.34 MASTER_WP4_FFoQSI_3__VB07-30__bin.42 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-AR__bin.24 92.09834835 1.734234234 301 2555773 67.19 12573 SAMN36690595 SRR25395314 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-AR__bin.45 91.94677871 0.420168067 158 2074170 59.19 22021 SAMN36690595 SRR25395314 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-AR__bin.1 50.47021944 4.022988506 202 990435 37.9 5889 SAMN36690595 SRR25395314 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2239_73323__bin.20 MASTER_WP4_FFoQSI_1__VB14-F-AR__bin.1 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-AR__bin.38 74.48275862 1.724137931 171 1517478 36.39 12083 SAMN36690595 SRR25395314 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-AR__bin.32 52.93250328 0.180209699 135 1192397 55.59 11113 SAMN36690595 SRR25395314 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-AR__bin.42 86.33528265 1.364522417 364 2915344 70.04 11629 SAMN36690595 SRR25395314 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-AR__bin.50 81.29844961 0.775193798 307 2194459 69.04 9851 SAMN36690595 SRR25395314 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-AR__bin.48 95.625 0.916666667 183 2489945 59.77 17194 SAMN36690595 SRR25395314 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-AR__bin.9 94.86111111 2.083333333 237 3006746 73.14 19440 SAMN36690595 SRR25395314 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-AR__bin.10 84.4513154 3.115357644 258 2356161 35.56 14599 SAMN36690595 SRR25395314 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-AR__bin.20 85.1744186 1.744186047 365 4026855 69.24 17684 SAMN36690595 SRR25395314 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-AR__bin.23 89.82415902 0.745412844 225 2078626 65.74 13312 SAMN36690595 SRR25395314 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-AR__bin.3 75.29069767 2.238372093 528 2345812 65.68 5370 SAMN36690595 SRR25395314 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 MASTER_WP4_FFoQSI_1__VB14-F-AR__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-AR__bin.29 88.18106312 4.263565891 320 4897328 63.93 24453 SAMN36690595 SRR25395314 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2020__ERS3466771__bin.3 WalshAM_2020__ERS3466771__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745485 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-AR__bin.47 97.86756453 3.44680572 337 3115775 68.65 16318 SAMN36690595 SRR25395314 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.1 MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-AR__bin.2 99.41860465 1.453488372 48 3919130 67.39 153930 SAMN36690595 SRR25395314 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.39 MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.39 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;CALKWS01 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-AR__bin.13 96.18406285 0.440917108 78 2280295 46.48 46699 SAMN36690595 SRR25395314 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB14-F-AR__bin.13 MASTER_WP4_FFoQSI_1__VB14-F-AR__bin.13 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Idiomarina NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.28 92.41666667 3.055555556 239 2376540 32.85 16407 SAMN36690596 SRR25395313 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.32 73.14230343 1.647286822 309 2120358 63.49 8665 SAMN36690596 SRR25395313 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.2 88.10916179 0.730994152 140 1558769 54.99 14006 SAMN36690596 SRR25395313 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.35 91.68543544 0.675675676 275 2503819 67.19 13555 SAMN36690596 SRR25395313 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.43 82.45559039 3.448275862 428 3196639 70.66 10087 SAMN36690596 SRR25395313 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-29__bin.23 MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.43 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp030457675 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.33 96.70868347 0 152 2177860 59.25 23213 SAMN36690596 SRR25395313 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.24 72.4137931 0 167 1564301 36.41 11759 SAMN36690596 SRR25395313 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.12 73.10344828 0 363 2767621 70.19 10864 SAMN36690596 SRR25395313 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.30 71.12403101 1.744186047 234 1770725 69.27 11335 SAMN36690596 SRR25395313 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.45 94.375 0.208333333 184 2348025 59.84 15601 SAMN36690596 SRR25395313 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.38 96.52777778 1.111111111 274 2938379 73.09 16280 SAMN36690596 SRR25395313 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.5 85.6884058 1.449275362 220 2148369 35.79 13987 SAMN36690596 SRR25395313 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.8 86.43410853 1.162790698 340 3940600 69.3 19020 SAMN36690596 SRR25395313 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.31 86.98776758 0.05733945 189 1921655 65.86 16377 SAMN36690596 SRR25395313 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.36 70.16472868 1.744186047 491 2151442 65.78 4935 SAMN36690596 SRR25395313 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.36 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.18 93.54651163 0.872093023 194 4410259 64.65 46702 SAMN36690596 SRR25395313 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2020__ERS3466771__bin.3 WalshAM_2020__ERS3466771__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745485 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.22 71.70542636 3.197674419 309 2251550 68.65 11000 SAMN36690596 SRR25395313 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.15 90.93567251 0.097465887 205 2814885 65.98 20048 SAMN36690596 SRR25395313 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.48 MASTER_WP4_FFoQSI_3__VB13-29__bin.48 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.41 95.70306237 1.645240282 213 2584312 68.69 20668 SAMN36690596 SRR25395313 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.1 MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.23 95.81056466 4.116575592 245 2937614 37.2 18527 SAMN36690596 SRR25395313 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-06-AD__bin.9 MASTER_WP4_FFoQSI_1__VB-06-AD__bin.9 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;NA NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.39 99.41860465 0 95 3943531 67.36 72690 SAMN36690596 SRR25395313 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.39 MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.39 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;CALKWS01 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.13 69.5 0.277777778 322 1779821 61.42 6359 SAMN36690596 SRR25395313 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.5 MASTER_WP4_FFoQSI_1__VB-14D__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-23__bin.3 69.33770015 0.586400499 115 1128535 39.71 15690 SAMN36690222 SRR25395050 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-23__bin.1 57.14285714 0 41 757512 50.82 28662 SAMN36690222 SRR25395050 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_2__VB05-21__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-24__bin.5 61.69032023 0.062383032 133 995088 39.81 11693 SAMN36690223 SRR25395048 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-24__bin.1 61.86321783 0.144927536 116 1482527 46.91 20179 SAMN36690223 SRR25395048 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-24__bin.7 60.34482759 0 51 851647 50.53 27716 SAMN36690223 SRR25395048 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-25__bin.6 71.07662716 0.681014764 188 1136471 39.66 7517 SAMN36690224 SRR25395047 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-25__bin.3 63.33664722 0 538 1966326 46.26 4111 SAMN36690224 SRR25395047 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_FFoQSI_2__VB01-25__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-25__bin.1 50 0 37 593686 50.8 24166 SAMN36690224 SRR25395047 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-26__bin.2 90.88739863 1.769598669 229 1395851 39.49 7695 SAMN36690225 SRR25395046 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-26__bin.1 63.49288567 0.724637681 563 1892308 46.18 3675 SAMN36690225 SRR25395046 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_FFoQSI_2__VB01-26__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-26__bin.5 55.84415584 0 58 853039 50.82 28276 SAMN36690225 SRR25395046 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_2__VB05-21__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-27__bin.2 57.21927636 0.280723643 132 923644 39.89 9183 SAMN36690543 SRR25394789 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-27__bin.4 99.45652174 0 39 2845853 46.41 102877 SAMN36690543 SRR25394789 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-27__bin.1 90.90909091 0 86 1400330 50.54 26640 SAMN36690543 SRR25394789 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-28__bin.2 87.90522978 2.263464338 234 1400465 39.37 7390 SAMN36690544 SRR25394788 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-28__bin.3 99.45652174 0 43 2885057 46.38 109491 SAMN36690544 SRR25394788 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-28__bin.1 95.12987013 0 106 1580712 50.71 24167 SAMN36690544 SRR25394788 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_2__VB05-21__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-29__bin.20 95.69490587 1.744186047 338 3860569 63.12 17579 SAMN36690545 SRR25394787 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_FFoQSI_2__VB01-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-29__bin.4 50.43318649 0.513950073 178 1234277 55.28 7913 SAMN36690545 SRR25394787 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 MASTER_WP4_FFoQSI_2__VB01-29__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-29__bin.19 54.38596491 0 24 660752 53.74 48547 SAMN36690545 SRR25394787 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-29__bin.13 98.34834835 1.351351351 89 3014923 66.94 56862 SAMN36690545 SRR25394787 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-29__bin.5 91.92982456 1.949317739 328 3270244 70.17 16437 SAMN36690545 SRR25394787 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-29__bin.10 91.61821705 3.546511628 297 2623747 68.98 13109 SAMN36690545 SRR25394787 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-29__bin.21 98.125 0.833333333 86 2637765 59.66 59603 SAMN36690545 SRR25394787 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-29__bin.15 95.97222222 2.5 293 3050243 73.06 14729 SAMN36690545 SRR25394787 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-29__bin.17 77.19298246 0 241 4155613 69.28 36779 SAMN36690545 SRR25394787 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-29__bin.14 98.01605505 1.873088685 172 2611861 65.64 27820 SAMN36690545 SRR25394787 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-29__bin.16 97.94573643 4.069767442 271 4718906 67.28 31138 SAMN36690545 SRR25394787 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB01-30__bin.8 MASTER_WP4_FFoQSI_2__VB01-30__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;CALKWS01 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-30__bin.26 99.30555556 1.527777778 202 2626095 32.96 27939 SAMN36690546 SRR25394786 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-30__bin.3 93.17552602 1.356589147 434 3665882 63.32 12838 SAMN36690546 SRR25394786 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_FFoQSI_2__VB01-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-30__bin.5 96.25550661 1.358296623 132 2741580 55.61 36568 SAMN36690546 SRR25394786 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-30__bin.33 68.22612086 3.118908382 72 1008625 54.12 19429 SAMN36690546 SRR25394786 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-30__bin.10 93.25751134 1.053113553 365 2656424 43.69 9678 SAMN36690546 SRR25394786 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy5_bin.lin.34 MASTER_WP4_FFoQSI_2__VB01-30__bin.10 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-30__bin.11 96.95945946 0.675675676 98 3031753 66.92 61234 SAMN36690546 SRR25394786 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-30__bin.15 91.40645329 2.550091075 325 2012472 36.36 8323 SAMN36690546 SRR25394786 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-30__bin.1 72.85659677 1.990498034 283 1862565 56.01 8874 SAMN36690546 SRR25394786 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-30__bin.21 94.5112782 4.385964912 417 3620065 69.98 13144 SAMN36690546 SRR25394786 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-30__bin.23 87.20930233 4.34662237 343 2700516 68.74 11641 SAMN36690546 SRR25394786 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-30__bin.13 98.125 0 91 2783132 59.62 50183 SAMN36690546 SRR25394786 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-30__bin.32 90.97222222 1.666666667 561 3060150 72.75 7282 SAMN36690546 SRR25394786 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-30__bin.24 91.86046512 1.162790698 271 4140951 69.28 32901 SAMN36690546 SRR25394786 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-30__bin.17 97.78669725 3.019877676 224 2680439 65.55 19764 SAMN36690546 SRR25394786 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-30__bin.18 94.44444444 2.631578947 536 3250293 64.82 8267 SAMN36690546 SRR25394786 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.48 MASTER_WP4_FFoQSI_3__VB13-29__bin.48 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB01-30__bin.8 96.80232558 2.325581395 88 4539784 67.27 181014 SAMN36690546 SRR25394786 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB01-30__bin.8 MASTER_WP4_FFoQSI_2__VB01-30__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;CALKWS01 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-23__bin.1 63.04949054 1.059471824 108 983727 39.87 12638 SAMN36690230 SRR25395041 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-23__bin.2 91.74734357 0.324675325 178 1641500 50.5 12406 SAMN36690230 SRR25395041 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_2__VB05-21__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-24__bin.2 59.65550704 0.862965273 100 946558 39.64 14584 SAMN36690231 SRR25395040 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-24__bin.1 96.18933698 0.162337662 130 1683006 50.46 17365 SAMN36690231 SRR25395040 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_2__VB05-21__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-25__bin.2 68.03458793 0.280723643 127 1067753 39.74 11232 SAMN36690232 SRR25395039 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-26__bin.1 54.92028835 0.633187773 108 911574 39.69 11859 SAMN36690233 SRR25395037 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-27__bin.8 67.65162542 0.212102308 124 1119012 39.56 13234 SAMN36690550 SRR25394782 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-27__bin.9 98.91304348 0.27173913 98 2915659 46.31 49369 SAMN36690550 SRR25394782 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-27__bin.6 87.72874595 1.308900524 532 2610016 53.57 5971 SAMN36690550 SRR25394782 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic MASTER_WP4_FFoQSI_2__VB03-28__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-27__bin.4 62.06896552 1.724137931 36 696640 43.7 30574 SAMN36690550 SRR25394782 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-27__bin.3 72.07792208 0 53 947696 50.59 29667 SAMN36690550 SRR25394782 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-28__bin.6 66.53185 0.731960907 123 1107197 39.6 12586 SAMN36690551 SRR25394781 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-28__bin.5 98.1884058 1.337560386 130 2864862 46.38 34146 SAMN36690551 SRR25394781 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-28__bin.2 98.16753927 1.151832461 237 2746231 53.74 16587 SAMN36690551 SRR25394781 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic MASTER_WP4_FFoQSI_2__VB03-28__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-28__bin.4 98 1.354166667 217 2317635 43.81 16803 SAMN36690551 SRR25394781 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-28__bin.9 74.02597403 0 54 938862 50.55 28666 SAMN36690551 SRR25394781 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-29__bin.21 96.66666667 2.222222222 267 2717575 32.71 20746 SAMN36690552 SRR25394780 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-29__bin.20 96.41472868 3.604651163 427 3646066 63.31 12715 SAMN36690552 SRR25394780 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-29__bin.15 84.87273617 2.437591777 313 2223584 55.67 8728 SAMN36690552 SRR25394780 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-29__bin.32 94.83430799 1.072124756 157 1894396 55.28 23533 SAMN36690552 SRR25394780 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-29__bin.5 99.49494949 1.637205387 168 2427504 65.72 25218 SAMN36690552 SRR25394780 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-29__bin.33 80.30390485 4.391133558 768 2919141 67.81 4514 SAMN36690552 SRR25394780 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 160 MASTER_WP4_FFoQSI_2__VB03-29__bin.33 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-29__bin.11 96.24624625 0.900900901 325 2740366 67.16 11921 SAMN36690552 SRR25394780 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-29__bin.17 90.13645224 2.485380117 406 3623721 69.95 14239 SAMN36690552 SRR25394780 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-29__bin.16 71.02579365 2.607142857 527 2157002 59.86 4603 SAMN36690552 SRR25394780 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB03-29__bin.16 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-29__bin.31 90.64922481 3.507751938 546 2827475 72.65 6212 SAMN36690552 SRR25394780 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-29__bin.34 92.71317829 3.391472868 582 4805867 68.97 13402 SAMN36690552 SRR25394780 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-29__bin.30 96.47335081 2.290301442 215 3380323 63.44 28945 SAMN36690552 SRR25394780 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB03-30__bin.18 MASTER_WP4_FFoQSI_2__VB03-30__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-29__bin.18 94.14181057 2.289377289 582 6493360 69.11 18790 SAMN36690552 SRR25394780 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.28 MASTER_WP4_FFoQSI_1__KM-2D__bin.28 Actinomycetota;Actinomycetes;Streptosporangiales;Streptosporangiaceae;Nocardiopsis Nocardiopsis sp900143625 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-29__bin.9 86.66612058 1.987767584 252 2194409 65.73 13152 SAMN36690552 SRR25394780 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-30__bin.8 98.19444444 1.805555556 252 2753230 32.78 16876 SAMN36690553 SRR25394778 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-30__bin.23 96.22093023 2.906976744 349 3440137 63.18 14479 SAMN36690553 SRR25394778 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-30__bin.4 86.22928467 0.352422907 248 2226693 55.66 11663 SAMN36690553 SRR25394778 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-30__bin.28 90.25341131 0.779727096 126 1795243 55.18 30318 SAMN36690553 SRR25394778 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-30__bin.20 97.47474747 1.136363636 149 2336644 65.83 25070 SAMN36690553 SRR25394778 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-30__bin.22 90.3480266 2.927927928 334 3006160 69.29 13884 SAMN36690553 SRR25394778 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_2__P2570__bin.32 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-30__bin.14 96.84684685 1.013513514 325 2739808 67.25 11581 SAMN36690553 SRR25394778 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-30__bin.16 92.57309942 1.851851852 331 3394046 70.19 16888 SAMN36690553 SRR25394778 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-30__bin.7 89.87403101 2.325581395 333 2851148 68.93 13377 SAMN36690553 SRR25394778 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-30__bin.27 93.19444444 2.083333333 406 2969925 72.93 10440 SAMN36690553 SRR25394778 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-30__bin.3 96.10465116 3.294573643 417 4578867 69.22 20855 SAMN36690553 SRR25394778 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-30__bin.18 97.46941896 2.244429882 68 3191344 63.64 69635 SAMN36690553 SRR25394778 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB03-30__bin.18 MASTER_WP4_FFoQSI_2__VB03-30__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-30__bin.9 84.97324159 2.224770642 234 2136355 65.79 14568 SAMN36690553 SRR25394778 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB03-30__bin.19 96.56007752 4.263565891 353 5206467 64.21 28510 SAMN36690553 SRR25394778 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2020__ERS3466771__bin.3 WalshAM_2020__ERS3466771__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745485 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-23__bin.2 98.69723435 0.363901019 99 1742810 38.89 29735 SAMN36690234 SRR25395036 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-23__bin.1 50 0 35 538589 50.66 25362 SAMN36690234 SRR25395036 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-24__bin.5 95.05475844 1.570232897 175 1594718 39.17 12220 SAMN36690235 SRR25395035 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-24__bin.2 99.45652174 0 43 2842897 46.41 103000 SAMN36690235 SRR25395035 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-24__bin.3 56.89655172 0 41 705334 50.99 27783 SAMN36690235 SRR25395035 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-25__bin.4 95.00987731 1.605323352 180 1571923 39.2 11883 SAMN36690236 SRR25395034 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-25__bin.3 63.79310345 0 28 1415320 46.57 117090 SAMN36690236 SRR25395034 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-25__bin.7 99.54707577 0.322420635 217 4553535 51.09 35377 SAMN36690236 SRR25395034 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967688__bin.2 MASTER_WP4_FFoQSI_2__VB04-25__bin.7 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-25__bin.1 86.37114788 1.98630137 747 2842319 39.07 4443 SAMN36690236 SRR25395034 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_312 MASTER_WP4_FFoQSI_2__VB04-25__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter baumannii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-26__bin.5 94.81752963 1.940112289 175 1627838 39.14 14459 SAMN36690237 SRR25395033 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-26__bin.2 96.29011387 0.766443701 283 2887048 46.21 16422 SAMN36690237 SRR25395033 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-26__bin.3 50.64935065 0 44 756657 50.81 26554 SAMN36690237 SRR25395033 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_2__VB05-21__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-26__bin.4 87.99591901 1.740532533 767 3861306 51.24 6244 SAMN36690237 SRR25395033 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967688__bin.2 MASTER_WP4_FFoQSI_2__VB04-25__bin.7 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-27__bin.1 93.95439107 0.881160324 177 1610663 39.31 13298 SAMN36690554 SRR25394777 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-27__bin.9 97.6171875 3.333333333 146 2617012 42.34 66316 SAMN36690554 SRR25394777 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-27__bin.2 56.89655172 0 11 979105 46.63 164305 SAMN36690554 SRR25394777 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-27__bin.4 96.39117427 2.373472949 242 2852830 53.64 16283 SAMN36690554 SRR25394777 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic MASTER_WP4_FFoQSI_2__VB03-28__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-27__bin.3 90.38636364 3.204427083 425 1752191 43.86 4848 SAMN36690554 SRR25394777 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_FFoQSI_2__VB04-27__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-27__bin.8 85.52257267 0.324675325 181 1294899 51.16 9879 SAMN36690554 SRR25394777 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_2__VB05-21__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-28__bin.8 74.49053857 0.145560408 112 1251113 38.98 16510 SAMN36690555 SRR25394776 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-28__bin.3 56.718789460000004 1.25 467 1932946 42.42 4950 SAMN36690555 SRR25394776 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-28__bin.2 75 0 34 2049747 46.27 153346 SAMN36690555 SRR25394776 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-28__bin.7 85.77303649 1.012677798 185 1322914 51.09 9404 SAMN36690555 SRR25394776 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_2__VB05-21__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-29__bin.6 89.07795699 1.759259259 451 2322211 32.77 6328 SAMN36690556 SRR25394775 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-29__bin.4 68.11306902 1.211453744 246 1841346 55.55 8415 SAMN36690556 SRR25394775 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-29__bin.18 86.06237817 0.194931774 137 1757189 55.12 21408 SAMN36690556 SRR25394775 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-29__bin.14 99.41077441 2.167508418 105 2459370 65.68 42772 SAMN36690556 SRR25394775 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-29__bin.25 94.78228228 0.900900901 160 3027624 69.09 38570 SAMN36690556 SRR25394775 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_2__P2570__bin.32 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-29__bin.3 94.85735736 1.951951952 310 2636647 67.22 12028 SAMN36690556 SRR25394775 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-29__bin.8 91.44222368 0.524246396 163 2636899 56.12 30624 SAMN36690556 SRR25394775 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-29__bin.24 92.2417154 1.851851852 404 3841585 70.05 14750 SAMN36690556 SRR25394775 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-29__bin.11 94.18604651 1.841085271 294 3094343 68.79 15034 SAMN36690556 SRR25394775 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-29__bin.5 97.6010101 2.807840308 259 3252619 68.23 24282 SAMN36690556 SRR25394775 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-28__bin.25 MASTER_WP4_FFoQSI_2__VB04-29__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium sp900163665 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-29__bin.20 88.45565749 1.452599388 63 3291387 65.38 109842 SAMN36690556 SRR25394775 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;CmP2 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-29__bin.16 98.95259939 2.790519878 185 2569542 65.56 23162 SAMN36690556 SRR25394775 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-29__bin.10 77.51937984 4.651162791 874 4535379 64.31 6434 SAMN36690556 SRR25394775 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2020__ERS3466771__bin.3 MASTER_WP4_FFoQSI_2__VB04-29__bin.10 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745485 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB04-29__bin.28 89.9 0.6 731 30928787 58.04 67762 SAMN36690556 SRR25394775 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-23__bin.2 70.11540861 0.696177306 136 1166611 39.72 11647 SAMN36690238 SRR25394877 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-23__bin.4 57.79220779 0 33 769723 51.08 30580 SAMN36690238 SRR25394877 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_2__VB05-21__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-24__bin.4 57.24526929 0.354803493 96 910790 39.87 13203 SAMN36690239 SRR25394875 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-24__bin.1 68.18181818 0 48 933475 51.05 29803 SAMN36690239 SRR25394875 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_2__VB05-21__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-25__bin.16 68.83116883 0 54 914063 50.87 27651 SAMN36690240 SRR25394874 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-25__bin.5 93.94273128 1.629955947 212 2594887 55.58 20854 SAMN36690240 SRR25394874 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 MASTER_WP4_FFoQSI_2__VB05-25__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-25__bin.12 90.38986355 1.169590643 171 1795812 55.09 19130 SAMN36690240 SRR25394874 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-25__bin.18 91.8972544 4.10982411 497 2795201 67.04 7428 SAMN36690240 SRR25394874 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-25__bin.13 89.43152031 1.785714286 281 2857740 55.78 16516 SAMN36690240 SRR25394874 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-25__bin.10 86.87134503 1.559454191 723 3257320 69.94 5796 SAMN36690240 SRR25394874 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_2__VB05-25__bin.10 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-25__bin.1 95.15503876 2.519379845 292 3877284 68.22 22311 SAMN36690240 SRR25394874 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-25__bin.2 94.10168196 2.630515509 480 2690734 65.21 7507 SAMN36690240 SRR25394874 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-25__bin.7 89.18189369 1.802325581 291 3109772 68.06 17294 SAMN36690240 SRR25394874 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-26__bin.2 56.87590975 0.181950509 95 927743 39.57 13700 SAMN36690241 SRR25394873 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-27__bin.1 65.51724138 0 18 1446193 46.58 157925 SAMN36690558 SRR25394772 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-27__bin.5 98.79385965 0 90 2514741 67.4 47449 SAMN36690558 SRR25394772 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MASTER_WP4_FFoQSI_2__VB05-27__bin.5 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-27__bin.6 71.42857143 0 62 1068492 50.7 26933 SAMN36690558 SRR25394772 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-28__bin.1 70.65217391 0 21 1645277 46.6 153346 SAMN36690559 SRR25395234 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-28__bin.6 98.13596491 0 158 2545177 67.38 22888 SAMN36690559 SRR25395234 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MASTER_WP4_FFoQSI_2__VB05-27__bin.5 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-28__bin.3 95.77922078 0 111 1579959 50.63 23314 SAMN36690559 SRR25395234 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-29__bin.1 99.44444444 2.222222222 221 2814130 32.72 26173 SAMN36690560 SRR25395233 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-29__bin.36 96.60852713 3.488372093 373 3810058 63.21 15168 SAMN36690560 SRR25395233 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-29__bin.21 72.10107685 0.477239354 284 1866609 55.64 7642 SAMN36690560 SRR25395233 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 MASTER_WP4_FFoQSI_2__VB05-25__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-29__bin.33 93.95711501 0.81871345 113 1968313 55.24 39320 SAMN36690560 SRR25395233 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-29__bin.23 97.39057239 0.862794613 107 2404389 65.75 37652 SAMN36690560 SRR25395233 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-29__bin.14 67.07260832 0.241312741 615 2306591 69.5 4372 SAMN36690560 SRR25395233 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_FFoQSI_2__VB05-29__bin.14 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-29__bin.12 83.51571268 3.383838384 425 2224593 68.9 6882 SAMN36690560 SRR25395233 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 160 MASTER_WP4_FFoQSI_2__VB05-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-29__bin.35 95.23273273 1.415701416 349 2600795 67.2 11076 SAMN36690560 SRR25395233 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-29__bin.27 95.51912568 1.643960951 160 1950370 36.65 19183 SAMN36690560 SRR25395233 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-29__bin.31 76.38937793 0.938967136 580 2053512 28.5 4068 SAMN36690560 SRR25395233 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB07-30__bin.41 MASTER_WP4_FFoQSI_2__VB05-29__bin.31 Bacillota;Clostridia;Tissierellales;SIT17;Anaeromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-29__bin.28 90.15399738 1.823940585 173 2630816 55.92 26308 SAMN36690560 SRR25395233 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-29__bin.22 91.32553606 1.949317739 367 3378635 70.07 13316 SAMN36690560 SRR25395233 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-29__bin.29 88.46899225 0.290697674 334 2795889 68.95 11202 SAMN36690560 SRR25395233 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-29__bin.6 92.56944444 0.833333333 220 2360556 59.92 14585 SAMN36690560 SRR25395233 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-29__bin.26 90.35852713 2.713178295 548 2953170 72.52 6990 SAMN36690560 SRR25395233 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-29__bin.32 56.89655172 0.862068966 606 2293526 64.11 4294 SAMN36690560 SRR25395233 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB03-30__bin.18 MASTER_WP4_FFoQSI_2__VB05-29__bin.32 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-29__bin.16 58.2257277 1.980118647 655 1953743 67.45 3176 SAMN36690560 SRR25395233 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-BG__bin.13 MASTER_WP4_FFoQSI_2__VB05-29__bin.16 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-29__bin.5 90.51987768 0.917431193 63 3342294 65.36 107570 SAMN36690560 SRR25395233 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;CmP2 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-29__bin.19 90.60015291 0.573394495 237 2299721 65.66 15091 SAMN36690560 SRR25395233 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-29__bin.25 89.64562569 0.387596899 244 3019973 68.23 21064 SAMN36690560 SRR25395233 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-30__bin.21 98.88888889 2.222222222 237 2799664 32.79 19344 SAMN36690561 SRR25395232 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-30__bin.18 95.31007752 2.034883721 416 3687320 63.18 13389 SAMN36690561 SRR25395232 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-30__bin.11 63.68942731 1.174743025 236 1458966 55.43 7034 SAMN36690561 SRR25395232 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 MASTER_WP4_FFoQSI_2__VB05-25__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-30__bin.34 93.37231969 0.779727096 127 1849358 55.22 23703 SAMN36690561 SRR25395232 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-30__bin.43 98.90572391 1.367845118 128 2324101 65.81 35207 SAMN36690561 SRR25395232 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-30__bin.26 71.12796138 0.193965517 381 1979784 55.63 5828 SAMN36690561 SRR25395232 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-30__bin.16 92.78772574 2.280379553 214 2475551 68.88 18562 SAMN36690561 SRR25395232 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 160 MASTER_WP4_FFoQSI_2__VB05-30__bin.16 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-30__bin.40 95.27027027 0.675675676 354 2585462 67.22 9862 SAMN36690561 SRR25395232 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-30__bin.29 93.98554557 2.641165756 188 1907071 36.6 14222 SAMN36690561 SRR25395232 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-30__bin.38 98.5915493 1.819248826 165 2423102 28.44 24982 SAMN36690561 SRR25395232 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB07-30__bin.41 MASTER_WP4_FFoQSI_3__VB07-30__bin.41 Bacillota;Clostridia;Tissierellales;SIT17;Anaeromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-30__bin.9 88.93457842 2.041830494 185 2680965 56.06 23688 SAMN36690561 SRR25395232 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-30__bin.17 87.66081871 0.779727096 320 2957710 70.07 15155 SAMN36690561 SRR25395232 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-30__bin.44 83.72093023 2.131782946 334 2768615 68.93 12307 SAMN36690561 SRR25395232 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-30__bin.42 89.375 1.041666667 298 2274082 59.91 9637 SAMN36690561 SRR25395232 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-30__bin.1 91.52777778 1.25 332 3022405 73.16 14005 SAMN36690561 SRR25395232 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-30__bin.15 96.70542636 1.841085271 406 4645243 69.18 19357 SAMN36690561 SRR25395232 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-30__bin.24 78.54166667 4.236111111 755 2873647 71.82 4332 SAMN36690561 SRR25395232 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-AD__bin.33 MASTER_WP4_FFoQSI_2__VB05-30__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 JB111 sp900163555 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-30__bin.23 96.55198777 3.860856269 79 3173635 63.69 85518 SAMN36690561 SRR25395232 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB03-30__bin.18 MASTER_WP4_FFoQSI_2__VB03-30__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-30__bin.35 88.11360357 3.484848485 578 3487198 67 8222 SAMN36690561 SRR25395232 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-BG__bin.13 MASTER_WP4_FFoQSI_2__VB05-30__bin.35 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-30__bin.10 89.37308869 0.917431193 44 3200953 65.36 111082 SAMN36690561 SRR25395232 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;CmP2 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-30__bin.30 87.49399301 1.357033639 258 2055289 65.79 12605 SAMN36690561 SRR25395232 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-30__bin.25 88.37486157 3.217054264 326 4559213 64.1 23242 SAMN36690561 SRR25395232 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2020__ERS3466771__bin.3 WalshAM_2020__ERS3466771__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745485 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB05-30__bin.4 87.06810631 1.259689922 224 2857745 68.18 20569 SAMN36690561 SRR25395232 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-23__bin.3 74.55812019 0.622790601 127 1204026 39.74 14232 SAMN36690242 SRR25394872 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-23__bin.5 86.73597403 2.09692029 418 2486240 46.57 7959 SAMN36690242 SRR25394872 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-23__bin.4 51.72413793 0 42 695043 50.47 27783 SAMN36690242 SRR25394872 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-24__bin.4 55.17241379 0 27 573058 51.26 29803 SAMN36690243 SRR25394870 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-25__bin.3 94.11312123 0.291120815 175 1503293 39.34 11290 SAMN36690244 SRR25394869 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-25__bin.5 95.10869565 0.176630435 50 2762841 46.37 91211 SAMN36690244 SRR25394869 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-25__bin.1 56.89655172 0 43 745714 51.04 27783 SAMN36690244 SRR25394869 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-25__bin.2 98.5975212 0.709838107 384 3630334 38.9 14153 SAMN36690244 SRR25394869 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_312 MASTER_WP4_FFoQSI_2__VB06-25__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter baumannii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-26__bin.10 94.12317183 0.254730713 188 1557917 39.4 11223 SAMN36690245 SRR25394868 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-26__bin.11 69.6124031 1.744186047 959 2841994 63.39 3204 SAMN36690245 SRR25394868 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_FFoQSI_2__VB06-26__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-26__bin.8 51.72413793 0 16 763248 46.84 58886 SAMN36690245 SRR25394868 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-26__bin.4 50 0 43 692731 50.93 28547 SAMN36690245 SRR25394868 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-26__bin.1 96.58590308 3.083700441 258 2716192 55.67 17249 SAMN36690245 SRR25394868 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-27__bin.1 95.37845706 1.168642129 148 1591474 39.21 15275 SAMN36690562 SRR25395231 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-27__bin.4 78.80434783 0 29 2033491 46.52 140485 SAMN36690562 SRR25395231 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-28__bin.9 75.75656755 0.644624662 139 1260831 39.47 13006 SAMN36690563 SRR25395228 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-28__bin.3 99.45652174 0 39 2823343 46.43 140621 SAMN36690563 SRR25395228 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-28__bin.12 98.0620155 3.023255814 350 3834765 63.11 17753 SAMN36690563 SRR25395228 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-28__bin.11 53.44827586 0 30 603586 51.11 29803 SAMN36690563 SRR25395228 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-28__bin.2 98.08558559 1.051051051 142 2949277 67.05 38200 SAMN36690563 SRR25395228 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-28__bin.14 94.13608563 1.681957187 234 2422102 65.67 15345 SAMN36690563 SRR25395228 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-28__bin.10 97.48062016 2.796234773 425 3548409 68.12 11903 SAMN36690563 SRR25395228 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-29__bin.18 97.96296296 1.666666667 273 2562723 32.92 16325 SAMN36690564 SRR25395227 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-29__bin.21 84.38953488 1.453488372 397 2525117 63.37 8039 SAMN36690564 SRR25395227 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-29__bin.36 80.47723935 1.943220754 204 2127413 55.65 13280 SAMN36690564 SRR25395227 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 MASTER_WP4_FFoQSI_2__VB05-25__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-29__bin.13 88.84015595 0 81 1822960 55.13 55463 SAMN36690564 SRR25395227 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-29__bin.37 94.59459459 0.465465465 293 2536993 67.25 11588 SAMN36690564 SRR25395227 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-29__bin.30 98.52941176 0 69 2520176 59.02 64879 SAMN36690564 SRR25395227 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-29__bin.23 83.00899953 3.260869565 240 1481901 38.12 7580 SAMN36690564 SRR25395227 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2239_73323__bin.20 MASTER_WP4_FFoQSI_2__VB06-29__bin.23 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-29__bin.20 92.40437158 3.734061931 165 1747140 36.44 17306 SAMN36690564 SRR25395227 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-29__bin.33 71.15224989 0.524246396 188 1718367 55.69 11051 SAMN36690564 SRR25395227 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-29__bin.5 77.82392027 0.581395349 235 2387658 69.06 16425 SAMN36690564 SRR25395227 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-29__bin.2 98.125 0.833333333 70 2618400 59.66 56436 SAMN36690564 SRR25395227 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-29__bin.12 72.76388889 3.75 683 2534688 72.93 4336 SAMN36690564 SRR25395227 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_2__VB06-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-29__bin.6 57.08333333 0.872093023 988 3194570 69.25 3512 SAMN36690564 SRR25395227 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 MASTER_WP4_FFoQSI_2__VB06-29__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-29__bin.11 79.22782875 1.586391437 265 1765331 65.95 9734 SAMN36690564 SRR25395227 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-29__bin.8 89.1375969 2.374031008 556 3026233 65.57 6919 SAMN36690564 SRR25395227 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 MASTER_WP4_FFoQSI_2__VB06-29__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-29__bin.19 67.35109718 2.742946708 499 4331879 64.62 13456 SAMN36690564 SRR25395227 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2020__ERS3466771__bin.3 WalshAM_2020__ERS3466771__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745485 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-29__bin.3 95.78488372 3.003875969 283 3284068 68.18 23005 SAMN36690564 SRR25395227 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-29__bin.29 94.1091954 0.628591954 67 3426800 53.98 96722 SAMN36690564 SRR25395227 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-29__bin.26 96.21212121 2.441077441 317 2971735 68.55 15932 SAMN36690564 SRR25395227 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB06-30__bin.23 MASTER_WP4_FFoQSI_2__VB06-30__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-29__bin.15 98.5380117 1.315789474 116 4191160 69.76 89339 SAMN36690564 SRR25395227 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB06-30__bin.8 MASTER_WP4_FFoQSI_2__VB06-30__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-30__bin.20 95.31810036 1.25 289 2384296 32.87 13540 SAMN36690565 SRR25395086 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-30__bin.4 77.03488372 0 358 2448866 63.46 8628 SAMN36690565 SRR25395086 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-30__bin.12 82.72760646 2.34948605 197 2015302 55.57 13195 SAMN36690565 SRR25395086 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 MASTER_WP4_FFoQSI_2__VB05-25__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-30__bin.25 94.83430799 0 70 1905209 55.25 60573 SAMN36690565 SRR25395086 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-30__bin.10 90.53678679 0.675675676 286 2473213 67.23 12041 SAMN36690565 SRR25395086 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-30__bin.22 96.28851541 1.260504202 84 2463290 59.08 45243 SAMN36690565 SRR25395086 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-30__bin.6 90.87732919 3.442028986 197 1577595 37.95 10717 SAMN36690565 SRR25395086 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2239_73323__bin.20 MASTER_WP4_FFoQSI_1__VB-06-BG__bin.35 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-30__bin.9 90.6010929 1.821493625 173 1629827 36.33 13367 SAMN36690565 SRR25395086 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-30__bin.3 81.58914729 0 222 2261376 69.2 16976 SAMN36690565 SRR25395086 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-30__bin.34 97.29166667 0.208333333 94 2602740 59.74 45364 SAMN36690565 SRR25395086 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-30__bin.29 73.55357143 2.5 699 2404172 72.86 3848 SAMN36690565 SRR25395086 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_2__VB06-30__bin.29 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-30__bin.17 53.32801701 3.50877193 969 3732298 69.27 4477 SAMN36690565 SRR25395086 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 MASTER_WP4_FFoQSI_2__VB06-30__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-30__bin.5 76.76605505 0.286697248 248 1671879 65.91 9667 SAMN36690565 SRR25395086 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-30__bin.19 89.72868217 3.875968992 548 3190751 65.67 7873 SAMN36690565 SRR25395086 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 MASTER_WP4_FFoQSI_2__VB06-30__bin.19 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-30__bin.16 94.28294574 0 312 3275876 68.16 18579 SAMN36690565 SRR25395086 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-30__bin.18 95.30172414 0.484913793 86 3414168 54.12 84609 SAMN36690565 SRR25395086 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-30__bin.23 96.46464646 2.104377104 237 2876153 68.45 20377 SAMN36690565 SRR25395086 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB06-30__bin.23 MASTER_WP4_FFoQSI_2__VB06-30__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-30__bin.8 99.12280702 1.413255361 122 4197734 69.7 81782 SAMN36690565 SRR25395086 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB06-30__bin.8 MASTER_WP4_FFoQSI_2__VB06-30__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB06-30__bin.24 84.51982238 3.114754098 411 2353344 37.47 6755 SAMN36690565 SRR25395086 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-06-AD__bin.9 MASTER_WP4_FFoQSI_1__VB-06-AD__bin.9 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;NA NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-23__bin.1 69.02173913 0 25 1920858 46.39 153346 SAMN36690250 SRR25394863 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-23__bin.6 67.24137931 0 43 744085 51.18 28662 SAMN36690250 SRR25394863 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-24__bin.4 71.42441256 0.681014764 96 1169220 39.58 19170 SAMN36690251 SRR25394862 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-24__bin.5 56.89655172 0 11 1026185 46.52 164305 SAMN36690251 SRR25394862 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-24__bin.2 87.01298701 0 80 1285911 50.85 24167 SAMN36690251 SRR25394862 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-25__bin.4 65.68413392 0.109170306 112 1062852 39.72 14147 SAMN36690252 SRR25394861 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-25__bin.7 75.54347826 0 31 2010100 46.44 140621 SAMN36690252 SRR25394861 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-25__bin.6 80.20397067 0.346320346 270 1564350 36.18 8195 SAMN36690252 SRR25394861 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 MASTER_WP4_FFoQSI_2__VB08-26__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-25__bin.5 70.12987013 0 56 915765 50.94 27783 SAMN36690252 SRR25394861 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-26__bin.1 68.69723435 0.465793304 105 1151900 39.58 14435 SAMN36690253 SRR25394859 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-26__bin.6 71.73913043 0 24 1770718 46.6 153346 SAMN36690253 SRR25394859 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-26__bin.4 67.54677927 0.546448087 298 1052519 53.91 3776 SAMN36690253 SRR25394859 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 MASTER_WP4_FFoQSI_2__VB08-26__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-26__bin.7 96.42857143 0.324675325 176 1747517 36.17 14150 SAMN36690253 SRR25394859 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 MASTER_WP4_FFoQSI_2__VB08-26__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-26__bin.8 60.34482759 0 41 695666 51.19 29667 SAMN36690253 SRR25394859 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-27__bin.4 63.56622999 0.291640674 78 1029772 39.55 19192 SAMN36690568 SRR25395083 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-27__bin.6 65.76086957 0 24 1637385 46.49 153346 SAMN36690568 SRR25395083 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-27__bin.5 88.53580232 0.167256985 311 1566473 36.34 6293 SAMN36690568 SRR25395083 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 MASTER_WP4_FFoQSI_2__VB08-26__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-27__bin.7 58.62068966 0 43 680205 51.03 24155 SAMN36690568 SRR25395083 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-28__bin.5 65.60615513 0.422645041 73 1064269 39.69 19192 SAMN36690569 SRR25395082 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-28__bin.4 88.04347826 0 34 2365117 46.51 102880 SAMN36690569 SRR25395082 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-28__bin.6 85.71428571 0.216450216 64 1138423 50.99 27717 SAMN36690569 SRR25395082 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-30__bin.49 98.75 3.37962963 286 2778139 32.86 15714 SAMN36690571 SRR25395080 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-30__bin.46 73.6000979 0.80763583 256 1942190 55.58 9586 SAMN36690571 SRR25395080 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-30__bin.52 88.30409357 0.097465887 154 1599450 55.02 18730 SAMN36690571 SRR25395080 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-30__bin.23 95.18097643 2.28956229 279 2247994 65.94 13315 SAMN36690571 SRR25395080 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-30__bin.2 97.27011494 1.203304598 174 3244522 55.26 34623 SAMN36690571 SRR25395080 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-30__bin.16 93.73123123 0.825825826 344 2557648 67.21 10347 SAMN36690571 SRR25395080 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-30__bin.33 96.98879552 0.140056022 168 2453945 59.11 21577 SAMN36690571 SRR25395080 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-30__bin.48 91.83039124 1.4571949 197 1686182 36.45 12065 SAMN36690571 SRR25395080 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-30__bin.12 93.25032765 0.684796855 166 3130706 55.75 31214 SAMN36690571 SRR25395080 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-30__bin.36 62.64411028 1.169590643 248 2398638 69.94 16330 SAMN36690571 SRR25395080 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-30__bin.30 90.01937984 0.872093023 319 2722591 68.87 13256 SAMN36690571 SRR25395080 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-30__bin.34 76 0 327 1747091 60.25 6104 SAMN36690571 SRR25395080 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-30__bin.51 96.60852713 1.453488372 352 4573291 69.13 25105 SAMN36690571 SRR25395080 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-30__bin.9 88.60856269 1.376146789 65 3266268 65.33 91040 SAMN36690571 SRR25395080 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;CmP2 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-30__bin.56 94.15204678 0.877192982 175 2812952 61 35706 SAMN36690571 SRR25395080 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__PU007_71775__bin.44 MASTER_WP4_UNINA_1__PU007_71775__bin.44 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-30__bin.45 90.88173731 4.075091575 782 6359310 69.12 13003 SAMN36690571 SRR25395080 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.28 MASTER_WP4_FFoQSI_1__KM-2D__bin.28 Actinomycetota;Actinomycetes;Streptosporangiales;Streptosporangiaceae;Nocardiopsis Nocardiopsis sp900143625 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-30__bin.6 87.31269113 1.880733945 232 2041025 65.81 13498 SAMN36690571 SRR25395080 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-30__bin.43 55.67398119 1.724137931 713 3747834 67.21 6693 SAMN36690571 SRR25395080 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_2__VB08-30__bin.43 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-30__bin.42 93.56725146 2.005012531 99 3086922 65.36 77889 SAMN36690571 SRR25395080 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.48 MASTER_WP4_FFoQSI_3__VB13-29__bin.48 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-30__bin.3 94.46018062 0.431034483 94 3289564 54.02 78103 SAMN36690571 SRR25395080 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-30__bin.29 51.95837777 2.359385783 1068 3095380 68.33 3106 SAMN36690571 SRR25395080 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.53 MASTER_WP4_FFoQSI_2__VB08-30__bin.29 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Gordonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-30__bin.20 88.624606 0.796934866 570 2882371 68.74 6472 SAMN36690571 SRR25395080 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_629 MASTER_WP4_FFoQSI_2__VB08-30__bin.20 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Xanthomonadaceae;Luteimonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB08-30__bin.25 56 0.5 4137 20209788 58.52 5416 SAMN36690571 SRR25395080 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-23__bin.4 78.97157191 0 44 2409819 46.31 87228 SAMN36690258 SRR25394854 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-23__bin.7 52.92207792 0 69 945348 50.88 19464 SAMN36690258 SRR25394854 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_2__VB05-21__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-26__bin.1 96.54891304 1.313405797 276 2845547 46.3 17049 SAMN36690261 SRR25394851 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-27__bin.1 64.76449275 0 24 1574714 46.57 101581 SAMN36690575 SRR25395075 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-27__bin.2 87.01298701 0 83 1297529 50.87 24167 SAMN36690575 SRR25395075 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-28__bin.4 56.89655172 0 8 974650 46.67 164305 SAMN36690576 SRR25395074 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-28__bin.6 74.5898838 0 93 1243259 50.71 19420 SAMN36690576 SRR25395074 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_2__VB05-21__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-29__bin.25 97.77777778 1.685185185 275 2788221 32.8 18065 SAMN36690577 SRR25395073 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-29__bin.5 86.43410853 1.647286822 404 2734359 63.52 9006 SAMN36690577 SRR25395073 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-29__bin.42 86.35477583 1.364522417 157 1530369 54.86 14728 SAMN36690577 SRR25395073 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-29__bin.36 94.71036119 1.346801347 201 2159166 65.96 16584 SAMN36690577 SRR25395073 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-29__bin.1 96.4021164 1.19047619 274 3301209 43.76 16377 SAMN36690577 SRR25395073 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2G__bin.45 MASTER_WP4_FFoQSI_1__KM-2G__bin.45 Bacteroidota;Bacteroidia;Sphingobacteriales;Sphingobacteriaceae;Sphingobacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-29__bin.15 97.14714715 1.565851566 258 2649156 67.18 14936 SAMN36690577 SRR25395073 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-29__bin.44 85.32442217 4.873294347 461 3611107 70.7 12978 SAMN36690577 SRR25395073 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-29__bin.23 MASTER_WP4_FFoQSI_2__VB11-29__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp030457675 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-29__bin.29 94.01357259 2.200888192 243 3449897 54.41 18855 SAMN36690577 SRR25395073 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811293__bin.2 MASTER_WP4_FFoQSI_2__VB10-29__bin.29 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella citrativorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-29__bin.20 99.78991597 0.840336134 48 2554543 58.97 82273 SAMN36690577 SRR25395073 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-29__bin.12 94.31693989 1.4571949 173 1719261 36.47 12754 SAMN36690577 SRR25395073 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-29__bin.43 82.80005569 0.877192982 446 2875706 70.19 9186 SAMN36690577 SRR25395073 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-29__bin.30 87.30620155 3.391472868 342 3065116 68.69 13923 SAMN36690577 SRR25395073 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-29__bin.41 79.29761905 0 287 2164418 59.94 9322 SAMN36690577 SRR25395073 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-29__bin.32 96.80555556 0.277777778 295 3126348 73.06 16710 SAMN36690577 SRR25395073 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-29__bin.28 78.45901293 1.489097322 352 2294792 67.5 9157 SAMN36690577 SRR25395073 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-BG__bin.13 MASTER_WP4_FFoQSI_2__VB10-29__bin.28 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-29__bin.21 93.42889908 1.834862385 231 2335552 65.67 15976 SAMN36690577 SRR25395073 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-29__bin.16 93.60465116 3.169988926 569 3247871 65.56 7321 SAMN36690577 SRR25395073 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 MASTER_WP4_FFoQSI_2__VB10-29__bin.16 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-29__bin.6 88.6 0.5 1912 30192794 58.1 22672 SAMN36690577 SRR25395073 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-30__bin.15 98.88888889 1.5 294 2837889 32.68 15949 SAMN36690578 SRR25395072 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-30__bin.5 90.64922481 1.065891473 430 3003754 63.39 9544 SAMN36690578 SRR25395072 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-30__bin.16 53.58174254 1.027900147 238 1456391 55.57 6899 SAMN36690578 SRR25395072 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-30__bin.11 90.74074074 0.779727096 151 1800249 54.97 21625 SAMN36690578 SRR25395072 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-30__bin.23 91.38684828 1.430976431 382 2150245 65.92 7301 SAMN36690578 SRR25395072 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-30__bin.28 96.20870871 1.276276276 282 2697946 67.18 15518 SAMN36690578 SRR25395072 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-30__bin.10 76.72160526 1.4571949 362 1394688 36.45 4431 SAMN36690578 SRR25395072 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_2__VB10-30__bin.10 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-30__bin.8 77.24497597 0.982961992 259 1984450 55.82 9263 SAMN36690578 SRR25395072 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-30__bin.4 84.41798942 1.559454191 333 2946488 70.17 13570 SAMN36690578 SRR25395072 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-30__bin.12 96.45833333 0 189 2629992 59.69 18941 SAMN36690578 SRR25395072 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-30__bin.13 94.16666667 3.833333333 294 3095900 73.08 15533 SAMN36690578 SRR25395072 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-30__bin.29 94.78593272 1.987767584 221 2356083 65.63 17393 SAMN36690578 SRR25395072 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-30__bin.20 96.31782946 1.308139535 504 3354078 65.49 9349 SAMN36690578 SRR25395072 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 MASTER_WP4_FFoQSI_2__VB10-30__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-30__bin.26 80.18410853 3.439922481 278 2987580 67.83 20910 SAMN36690578 SRR25395072 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB10-30__bin.3 80 0.4 3157 28777074 58.18 11850 SAMN36690578 SRR25395072 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-23__bin.7 77.26449275 0 29 2158338 46.45 125295 SAMN36690262 SRR25394850 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-25__bin.8 65.30797101 0 23 1717637 46.52 153855 SAMN36690264 SRR25395168 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-25__bin.3 68.83116883 0 46 800138 51.07 24165 SAMN36690264 SRR25395168 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-25__bin.11 90.23979768 0.96803653 672 3200027 39.14 5836 SAMN36690264 SRR25395168 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_312 MASTER_WP4_FFoQSI_2__VB11-25__bin.11 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter baumannii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-26__bin.3 61.67342483 0.353503847 102 986159 39.6 13710 SAMN36690265 SRR25395167 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-26__bin.5 99.45652174 0 41 2859963 46.4 109491 SAMN36690265 SRR25395167 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-26__bin.6 51.72413793 0 35 574526 50.86 24167 SAMN36690265 SRR25395167 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-26__bin.7 100 0.273972603 52 3286849 41.6 107250 SAMN36690265 SRR25395167 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-26__bin.7 MASTER_WP4_FFoQSI_2__VB11-26__bin.7 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter johnsonii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-27__bin.1 73.36956522 0 26 1830955 46.59 109354 SAMN36690579 SRR25395071 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-27__bin.7 65.51724138 0 37 728778 51.14 27783 SAMN36690579 SRR25395071 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-28__bin.5 73.91304348 0 21 1767107 46.75 153346 SAMN36690580 SRR25395070 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-28__bin.6 62.06896552 0 24 559490 51.46 30579 SAMN36690580 SRR25395070 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-29__bin.8 72.01612903 1.944444444 662 2139165 33.09 3570 SAMN36690581 SRR25395069 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_2__VB11-29__bin.8 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-29__bin.3 89.92248062 1.744186047 453 2936497 63.33 8736 SAMN36690581 SRR25395069 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-29__bin.22 87.92951542 2.393538913 265 2253552 55.76 11611 SAMN36690581 SRR25395069 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-29__bin.7 96.02011494 1.307471264 170 3139958 55.31 36877 SAMN36690581 SRR25395069 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-29__bin.9 96.56531532 1.591591592 333 2640246 67.17 11076 SAMN36690581 SRR25395069 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-29__bin.23 92.90448343 0 305 3193613 70.89 18900 SAMN36690581 SRR25395069 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-29__bin.23 MASTER_WP4_FFoQSI_2__VB11-29__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp030457675 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-29__bin.10 92.59953162 4.143897996 202 2028032 36.61 16849 SAMN36690581 SRR25395069 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-29__bin.16 87.50491481 2.221494102 265 2436514 55.9 14163 SAMN36690581 SRR25395069 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-29__bin.13 94.04051988 1.376146789 295 2469111 65.5 13194 SAMN36690581 SRR25395069 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-29__bin.25 94.6012931 1.493926332 136 3281285 54.14 55221 SAMN36690581 SRR25395069 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-29__bin.24 96.91810345 0.05387931 142 2540772 61.06 30362 SAMN36690581 SRR25395069 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-30__bin.19 MASTER_WP4_FFoQSI_2__VB11-30__bin.19 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella sp030457605 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-30__bin.16 91.2037037 2.333333333 505 2689078 32.86 7410 SAMN36690582 SRR25395068 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-30__bin.15 87.78100775 1.356589147 473 2864461 63.46 8021 SAMN36690582 SRR25395068 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-30__bin.10 88.8161667 0.675477239 296 2378713 55.62 10586 SAMN36690582 SRR25395068 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-30__bin.7 89.72701149 0.718390805 151 3014351 55.34 36877 SAMN36690582 SRR25395068 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-30__bin.13 96.50900901 2.552552553 301 2633571 67.17 13518 SAMN36690582 SRR25395068 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-30__bin.2 93.66471735 0.877192982 326 3327728 70.84 17820 SAMN36690582 SRR25395068 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-29__bin.23 MASTER_WP4_FFoQSI_2__VB11-29__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp030457675 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-30__bin.17 96.92050062 2.367941712 157 1894052 36.67 21085 SAMN36690582 SRR25395068 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-30__bin.9 87.45139799 1.462429008 248 2332219 55.84 13701 SAMN36690582 SRR25395068 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-30__bin.8 97.55733945 3.363914373 269 2532306 65.56 14683 SAMN36690582 SRR25395068 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-30__bin.1 92.96742051 0.484913793 123 3250199 54.12 65416 SAMN36690582 SRR25395068 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB11-30__bin.19 97.98850575 0 104 2545340 61 52704 SAMN36690582 SRR25395068 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-30__bin.19 MASTER_WP4_FFoQSI_2__VB11-30__bin.19 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella sp030457605 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-23__bin.6 65.51724138 0 18 1462245 46.57 157925 SAMN36690277 SRR25395154 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-23__bin.1 60.34482759 0 38 698638 51.15 27783 SAMN36690277 SRR25395154 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-24__bin.1 65.51724138 0 21 1506693 46.57 157925 SAMN36690278 SRR25395153 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-25__bin.6 56.04075691 0.545851528 93 925485 39.89 15473 SAMN36690279 SRR25395152 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-25__bin.11 80.43478261 0 30 2136984 46.45 153346 SAMN36690279 SRR25395152 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-25__bin.8 50 0 37 581516 50.81 24167 SAMN36690279 SRR25395152 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-25__bin.4 99.33774834 1.876379691 135 2752236 36.57 32721 SAMN36690279 SRR25395152 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967702__bin.3 MASTER_WP4_FFoQSI_2__VB15-25__bin.4 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Kurthia Kurthia gibsonii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-25__bin.5 98.28767123 2.84300935 509 3990822 38.79 11961 SAMN36690279 SRR25395152 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_312 MASTER_WP4_FFoQSI_2__VB15-25__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter baumannii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-26__bin.9 56.89655172 0 12 1103835 46.56 164305 SAMN36690280 SRR25395151 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-26__bin.4 50 0 36 543907 50.7 24167 SAMN36690280 SRR25395151 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-26__bin.11 93.61529199 4.194260486 523 2508432 36.58 5790 SAMN36690280 SRR25395151 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967702__bin.3 MASTER_WP4_FFoQSI_2__VB15-25__bin.4 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Kurthia Kurthia gibsonii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-27__bin.7 75 0 32 1821763 46.56 109491 SAMN36690597 SRR25395312 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-27__bin.5 98.20833333 2.708333333 434 2321295 43.89 6970 SAMN36690597 SRR25395312 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_FFoQSI_2__VB15-27__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-27__bin.4 54.22077922 0 89 1048215 50.48 16406 SAMN36690597 SRR25395312 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_2__VB05-21__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-28__bin.9 70.65217391 0 26 1667769 46.55 153346 SAMN36690598 SRR25395311 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-28__bin.5 65.51724138 0 45 741727 51.1 27716 SAMN36690598 SRR25395311 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-28__bin.1 83.05876772 3.410388128 647 2587914 39.15 4696 SAMN36690598 SRR25395311 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_312 MASTER_WP4_FFoQSI_2__VB15-28__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter baumannii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-29__bin.11 95.78703704 3.055555556 312 2703153 32.87 13504 SAMN36690599 SRR25395310 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-29__bin.14 85.12062094 1.468428781 223 2248872 55.76 13074 SAMN36690599 SRR25395310 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-29__bin.2 95.71150097 0 79 2015648 55.22 70269 SAMN36690599 SRR25395310 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-29__bin.15 97.63513514 0.675675676 221 2783003 67.18 21281 SAMN36690599 SRR25395310 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-29__bin.8 88.16526611 1.260504202 269 2266359 59.14 10113 SAMN36690599 SRR25395310 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-29__bin.19 94.4209413 2.190409039 162 1765957 36.66 17273 SAMN36690599 SRR25395310 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-29__bin.9 81.05613805 1.25054609 220 2240538 55.98 12678 SAMN36690599 SRR25395310 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-29__bin.22 91.8128655 0.935672515 326 3339919 70.09 16439 SAMN36690599 SRR25395310 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-29__bin.24 83.67248062 0 231 2564170 68.89 16475 SAMN36690599 SRR25395310 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-29__bin.12 99.79166667 0 62 2693105 59.62 71083 SAMN36690599 SRR25395310 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-29__bin.10 94.16666667 2.5 401 3001838 72.95 9960 SAMN36690599 SRR25395310 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-29__bin.21 92.53875969 1.162790698 236 4361266 69.23 31917 SAMN36690599 SRR25395310 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-29__bin.13 94.39220183 1.146788991 149 2397316 65.66 25525 SAMN36690599 SRR25395310 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-29__bin.17 77.55813953 0.872093023 318 2799592 65.88 12961 SAMN36690599 SRR25395310 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 MASTER_WP4_FFoQSI_2__VB15-29__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-30__bin.31 96.52777778 4.166666667 380 2967397 32.76 12032 SAMN36690601 SRR25395308 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-30__bin.4 83.54231975 4.231974922 413 3212766 63.09 10712 SAMN36690601 SRR25395308 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-30__bin.22 59.48849731 1.688693098 241 1537654 55.63 7524 SAMN36690601 SRR25395308 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-30__bin.34 93.37231969 0 103 1919469 55.39 52483 SAMN36690601 SRR25395308 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-30__bin.42 95.98348348 1.126126126 296 2666900 67.17 12863 SAMN36690601 SRR25395308 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-30__bin.36 87.4909496 3.859649123 772 4046212 70.14 6892 SAMN36690601 SRR25395308 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-29__bin.23 MASTER_WP4_FFoQSI_2__VB15-30__bin.36 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp030457675 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-30__bin.17 98.94957983 0 46 2560172 58.93 89425 SAMN36690601 SRR25395308 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-30__bin.16 88.57699149 1.762945615 202 1525948 36.45 10864 SAMN36690601 SRR25395308 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-30__bin.25 72.42463958 0.065530799 230 1786698 55.87 10204 SAMN36690601 SRR25395308 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-30__bin.20 89.37621832 2.729044834 461 3223803 70.09 10350 SAMN36690601 SRR25395308 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-30__bin.1 96.45833333 1.666666667 145 2624303 59.72 28273 SAMN36690601 SRR25395308 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-30__bin.43 91.37596899 2.034883721 330 4503226 69.18 26642 SAMN36690601 SRR25395308 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-30__bin.32 88.99464832 1.720183486 251 2295154 65.72 14800 SAMN36690601 SRR25395308 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-30__bin.12 71.80232558 2.906976744 177 2648943 63.73 28896 SAMN36690601 SRR25395308 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2020__ERS3466771__bin.3 MASTER_WP4_FFoQSI_2__VB15-30__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745485 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-30__bin.37 75.97093835 1.149425287 416 2592604 54.13 7328 SAMN36690601 SRR25395308 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-30__bin.14 92.8875969 2.42248062 224 5024696 68.92 48792 SAMN36690601 SRR25395308 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1D__bin.27 MASTER_WP4_FFoQSI_1__KM-1D__bin.27 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB15-30__bin.29 75.9 0.5 3647 27212482 58.16 9040 SAMN36690601 SRR25395308 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-24__bin.4 52.86719346 0.305676856 95 838208 39.7 12842 SAMN36690282 SRR25395149 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-24__bin.1 75.51226869 0.380434783 475 2366628 46.3 6375 SAMN36690282 SRR25395149 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-25__bin.3 64.95286615 0.353503847 119 1057852 39.75 11159 SAMN36690283 SRR25395147 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-25__bin.4 70.48338691 0.923913043 492 2171979 46.4 5331 SAMN36690283 SRR25395147 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-26__bin.2 59.44063215 0.426284051 108 918579 39.78 11907 SAMN36690284 SRR25395146 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-26__bin.1 90.29811325 1.535326087 354 2659991 46.3 11576 SAMN36690284 SRR25395146 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-27__bin.6 52.07250295 0.58224163 98 824847 39.26 11770 SAMN36690602 SRR25395307 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-27__bin.1 78.80434783 0 27 1978374 46.6 140485 SAMN36690602 SRR25395307 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-27__bin.7 75.86206897 0 53 897545 51.17 27447 SAMN36690602 SRR25395307 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-28__bin.11 98.58527132 3.446843854 497 3954834 63.22 13314 SAMN36690603 SRR25395305 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_FFoQSI_1__KM-4G__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-28__bin.8 55.17241379 0 12 1101529 46.72 164305 SAMN36690603 SRR25395305 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-28__bin.10 79.19097222 0.989583333 283 2228677 43.72 12330 SAMN36690603 SRR25395305 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 LandisEA_2021__SRS5653155__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-28__bin.9 79.22077922 0 58 1066227 51.07 29803 SAMN36690603 SRR25395305 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-28__bin.4 96.21546149 0.514403292 153 1770345 42.54 17991 SAMN36690603 SRR25395305 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 MASTER_WP4_FFoQSI_2__VB16-28__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-28__bin.2 75.13084513 1.891891892 677 2376895 67.03 4037 SAMN36690603 SRR25395305 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_FFoQSI_2__VB16-28__bin.2 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-29__bin.5 77.86821705 1.356589147 428 2380490 63.48 7101 SAMN36690604 SRR25395304 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_FFoQSI_1__KM-4G__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-29__bin.3 89.61988304 2.397660819 300 3799757 70.29 20113 SAMN36690604 SRR25395304 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 MASTER_WP4_FFoQSI_2__VB16-29__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-29__bin.20 75.01072501 2.417417417 548 2811686 67.71 6260 SAMN36690604 SRR25395304 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS11-30__bin.13 MASTER_WP4_TEAGASC_1__TGS11-30__bin.13 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-29__bin.19 92.19219219 1.126126126 315 2584648 67.22 12371 SAMN36690604 SRR25395304 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-29__bin.4 98.1092437 0.420168067 98 2505461 58.98 41084 SAMN36690604 SRR25395304 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-29__bin.11 68.13192742 1.001821494 314 1222402 36.4 4424 SAMN36690604 SRR25395304 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_2__VB16-29__bin.11 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-29__bin.23 90.69767442 0.872093023 341 2781218 68.9 13116 SAMN36690604 SRR25395304 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-29__bin.21 59.05753968 1.666666667 364 1685944 60.14 5137 SAMN36690604 SRR25395304 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB16-29__bin.21 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-29__bin.8 61.45833333 1 684 2242884 72.65 3632 SAMN36690604 SRR25395304 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_2__VB16-29__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-29__bin.13 98.54651163 0.581395349 228 4604532 69.21 37535 SAMN36690604 SRR25395304 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-29__bin.18 98.08868502 3.849934469 193 3262450 63.72 27930 SAMN36690604 SRR25395304 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB03-30__bin.18 MASTER_WP4_FFoQSI_2__VB03-30__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-29__bin.10 96.63990826 1.995412844 207 2462433 65.52 18111 SAMN36690604 SRR25395304 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-29__bin.7 83.83419689 4.766839378 840 4085975 68.41 6349 SAMN36690604 SRR25395304 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB16-30__bin.31 MASTER_WP4_FFoQSI_2__VB16-30__bin.31 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Avipropionibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-30__bin.4 90.88595203 0.991189427 168 2427277 55.65 18362 SAMN36690605 SRR25395303 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-30__bin.20 53.95711501 0 171 1240366 55.5 8185 SAMN36690605 SRR25395303 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-30__bin.22 97.52359502 1.689189189 96 3307320 67.58 56287 SAMN36690605 SRR25395303 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS11-30__bin.13 MASTER_WP4_TEAGASC_1__TGS11-30__bin.13 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-30__bin.18 90.55930931 1.576576577 301 2469181 67.24 11581 SAMN36690605 SRR25395303 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-30__bin.26 94.32773109 1.260504202 107 2256669 59.14 35864 SAMN36690605 SRR25395303 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-30__bin.5 94.0066984 2.367941712 162 1840560 36.64 16134 SAMN36690605 SRR25395303 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-30__bin.25 87.96909492 2.538631347 339 2017767 36.66 7311 SAMN36690605 SRR25395303 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_2__bin.27 MASTER_WP4_FFoQSI_2__VB16-30__bin.25 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus koreensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-30__bin.1 81.00775194 0.290697674 310 2437435 69.01 10958 SAMN36690605 SRR25395303 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-30__bin.3 96.45833333 0.972222222 159 2556426 59.84 25344 SAMN36690605 SRR25395303 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-30__bin.14 97.77777778 1.527777778 297 3043211 73.12 15877 SAMN36690605 SRR25395303 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-30__bin.24 96.12403101 1.162790698 357 4413468 69.15 21570 SAMN36690605 SRR25395303 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-30__bin.17 94.65214067 3.211009174 222 2304106 65.67 15650 SAMN36690605 SRR25395303 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-30__bin.15 94.79097453 4.941860465 418 3997645 65.34 13769 SAMN36690605 SRR25395303 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 MASTER_WP4_FFoQSI_2__VB16-30__bin.15 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-30__bin.30 54.46708464 1.724137931 661 3318627 64.92 5828 SAMN36690605 SRR25395303 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2020__ERS3466771__bin.3 MASTER_WP4_FFoQSI_2__VB16-30__bin.30 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745485 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-30__bin.27 79.50867052 3.275529865 337 2932579 68.37 12014 SAMN36690605 SRR25395303 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-30__bin.31 98.791019 0.690846287 79 4234495 68.66 91805 SAMN36690605 SRR25395303 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB16-30__bin.31 MASTER_WP4_FFoQSI_2__VB16-30__bin.31 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Avipropionibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-30__bin.6 95.29411765 0.784313725 190 3441116 65.55 31834 SAMN36690605 SRR25395303 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB16-30__bin.6 MASTER_WP4_FFoQSI_2__VB16-30__bin.6 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Dietzia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-30__bin.11 93.21637427 3.235867446 637 5420668 68.07 12864 SAMN36690605 SRR25395303 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB16-30__bin.11 MASTER_WP4_FFoQSI_2__VB16-30__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-30__bin.16 90.21959043 1.714779176 429 4301711 68.56 14694 SAMN36690605 SRR25395303 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB16-30__bin.16 MASTER_WP4_FFoQSI_2__VB16-30__bin.16 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;JBBSQO01 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_2__VB16-30__bin.19 97.81849913 1.090750436 135 3751956 68.66 42970 SAMN36690605 SRR25395303 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-30__bin.31 MASTER_WP4_FFoQSI_3__VB13-30__bin.31 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Arachnia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-23__bin.3 93.91534392 0.529100529 98 1289321 38.09 19466 SAMN36690226 SRR25395045 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_FFoQSI_3__VB09-26__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-23__bin.9 75.05240374 0.649350649 101 1103501 51.26 13852 SAMN36690226 SRR25395045 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_2__VB05-21__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-24__bin.6 94.50019677 0 137 1731144 36.25 19105 SAMN36690227 SRR25395044 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-25__bin.8 90.10013085 0 132 1298362 38.09 13194 SAMN36690228 SRR25395043 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_FFoQSI_3__VB09-26__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-25__bin.6 66.31001944 0.730027548 217 1138705 36.47 6384 SAMN36690228 SRR25395043 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-26__bin.1 98.41269841 0 104 1358674 38.12 19303 SAMN36690229 SRR25395042 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_FFoQSI_3__VB09-26__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-26__bin.2 55.17241379 0 193 953587 36.66 5607 SAMN36690229 SRR25395042 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-28__bin.10 76.89655172 1.724137931 136 2160706 46.73 20416 SAMN36690547 SRR25394785 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-28__bin.16 79.89296244 1.545031056 231 2317927 47 12103 SAMN36690547 SRR25394785 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-28__bin.1 79.6875 1.875 17 751454 43.48 85610 SAMN36690547 SRR25394785 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-28__bin.12 91.66666667 0 78 1353693 51.1 23529 SAMN36690547 SRR25394785 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_2__VB05-21__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-29__bin.41 74.13793103 1.724137931 386 2330585 32.84 7739 SAMN36690548 SRR25394784 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-29__bin.20 76.8120155 1.065891473 390 2400329 63.55 7853 SAMN36690548 SRR25394784 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-29__bin.17 75.14106583 3.448275862 744 5471586 69.61 10783 SAMN36690548 SRR25394784 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 MASTER_WP4_FFoQSI_3__VB02-29__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-29__bin.36 53.50877193 0 67 784680 54.13 19366 SAMN36690548 SRR25394784 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-29__bin.31 89.62197735 0.925925926 282 1946929 65.95 9550 SAMN36690548 SRR25394784 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-29__bin.13 81.25627292 1.510989011 308 2157947 44.04 8218 SAMN36690548 SRR25394784 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy5_bin.lin.34 MASTER_WP4_FFoQSI_3__VB07-30__bin.42 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-29__bin.3 83.53327466 1.113505747 295 2762931 55.57 12715 SAMN36690548 SRR25394784 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-29__bin.11 94.15165165 0.990990991 331 2627562 67.27 11270 SAMN36690548 SRR25394784 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-29__bin.34 89.52641166 4.935660145 257 1978002 36.43 9508 SAMN36690548 SRR25394784 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Ruoffia Ruoffia tabacinasalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-29__bin.28 92.04956837 4.483430799 443 3692865 70.61 13474 SAMN36690548 SRR25394784 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-29__bin.23 MASTER_WP4_FFoQSI_2__VB11-29__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp030457675 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-29__bin.9 89.84593838 1.540616246 186 1983694 59.14 15270 SAMN36690548 SRR25394784 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-29__bin.33 71.83908046 0 181 1501875 36.41 11957 SAMN36690548 SRR25394784 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-29__bin.22 93.41105657 4.578392622 305 2317228 33.86 12613 SAMN36690548 SRR25394784 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2239_73323__bin.32 MASTER_WP4_CSIC_1__P2239_73323__bin.32 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-29__bin.44 97.18309859 2.171361502 272 2245063 28.38 14621 SAMN36690548 SRR25394784 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB07-30__bin.41 MASTER_WP4_FFoQSI_3__VB07-30__bin.41 Bacillota;Clostridia;Tissierellales;SIT17;Anaeromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-29__bin.19 88.52687274 1.471734893 321 2954813 70.25 13175 SAMN36690548 SRR25394784 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-29__bin.21 89.8255814 1.065891473 337 2650519 68.93 12112 SAMN36690548 SRR25394784 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-29__bin.30 83.40277778 0.5 259 2149557 59.99 10067 SAMN36690548 SRR25394784 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-29__bin.38 93.96024465 2.637614679 120 3519127 65.14 78581 SAMN36690548 SRR25394784 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 MASTER_WP4_FFoQSI_1__VB-08-BD__bin.60 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;CmP2 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-29__bin.24 84.06432749 2.729044834 455 3158572 70.55 10264 SAMN36690548 SRR25394784 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M15__bin.31 MASTER_WP4_FFoQSI_1__VB-16-M15__bin.31 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Gulosibacter Gulosibacter sp900163695 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-30__bin.5 56.19122257 0 340 1875558 32.79 6840 SAMN36690549 SRR25394783 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_3__VB02-30__bin.5 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-30__bin.3 83.56589147 0.581395349 369 2382856 63.46 8287 SAMN36690549 SRR25394783 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-30__bin.22 84.69785575 0.960735171 146 1555369 55.05 15119 SAMN36690549 SRR25394783 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-30__bin.27 87.18089991 1.851851852 295 1807955 66.05 8089 SAMN36690549 SRR25394783 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-30__bin.19 86.32326007 0.70970696 184 2288802 44.09 17295 SAMN36690549 SRR25394783 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy5_bin.lin.34 MASTER_WP4_FFoQSI_3__VB07-30__bin.42 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-30__bin.31 96.04885057 0.862068966 156 3170803 55.41 38331 SAMN36690549 SRR25394783 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-30__bin.30 91.72672673 0.990990991 261 2573454 67.87 16714 SAMN36690549 SRR25394783 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 FalardeauJ_2023__SRR20811223__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-30__bin.11 91.85435435 1.576576577 320 2580949 67.26 11181 SAMN36690549 SRR25394783 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-30__bin.37 92.98488397 4.389212057 239 2046335 36.39 10868 SAMN36690549 SRR25394783 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Ruoffia Ruoffia tabacinasalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-30__bin.35 92.95600111 3.216374269 365 3349000 70.83 15603 SAMN36690549 SRR25394783 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-29__bin.23 MASTER_WP4_FFoQSI_2__VB11-29__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp030457675 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-30__bin.13 86.34453782 1.470588235 162 2058751 59.03 19075 SAMN36690549 SRR25394783 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-30__bin.40 65.51724138 0 159 1368995 36.42 11642 SAMN36690549 SRR25394783 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-30__bin.24 97.18309859 2.992957746 267 2223514 28.36 13073 SAMN36690549 SRR25394783 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB07-30__bin.41 MASTER_WP4_FFoQSI_3__VB07-30__bin.41 Bacillota;Clostridia;Tissierellales;SIT17;Anaeromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-30__bin.15 82.49512671 1.169590643 339 2938827 70.25 13723 SAMN36690549 SRR25394783 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-30__bin.32 90.69767442 0.290697674 346 2683118 68.86 11799 SAMN36690549 SRR25394783 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-30__bin.23 80 1.785714286 267 1885733 60.06 8282 SAMN36690549 SRR25394783 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-30__bin.6 91.51162791 2.810077519 757 4816174 69.09 9207 SAMN36690549 SRR25394783 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-30__bin.45 68.20286195 2.109988777 331 2130637 67.16 9562 SAMN36690549 SRR25394783 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-BG__bin.13 MASTER_WP4_FFoQSI_3__VB02-30__bin.45 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-30__bin.8 55.58103976 0.917431193 70 2499900 65.64 93942 SAMN36690549 SRR25394783 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;CmP2 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-30__bin.9 97.46588694 2.631578947 243 3615243 70.74 25896 SAMN36690549 SRR25394783 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M15__bin.31 MASTER_WP4_FFoQSI_1__VB-16-M15__bin.31 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Gulosibacter Gulosibacter sp900163695 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB02-30__bin.26 56.89655172 0 26 1025664 64.37 134958 SAMN36690549 SRR25394783 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 MASTER_WP4_FFoQSI_1__VB-08-BD__bin.60 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;CmP2 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB04-30__bin.5 93.41248507 1.944444444 353 2391587 32.91 10116 SAMN36690557 SRR25394774 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB04-30__bin.24 91.47286822 0.581395349 370 2965295 63.32 11171 SAMN36690557 SRR25394774 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB04-30__bin.16 70.56530214 0 53 1006302 54.41 41396 SAMN36690557 SRR25394774 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB04-30__bin.40 96.45699418 0.736531987 169 2218546 65.85 21666 SAMN36690557 SRR25394774 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB04-30__bin.9 94.52327327 0.900900901 156 2918762 69.25 32344 SAMN36690557 SRR25394774 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_2__P2570__bin.32 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB04-30__bin.26 92.97138047 3.661616162 267 2474721 68.83 13689 SAMN36690557 SRR25394774 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 160 MASTER_WP4_FFoQSI_2__VB05-30__bin.16 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB04-30__bin.17 91.7042042 1.866151866 295 2521233 67.19 12306 SAMN36690557 SRR25394774 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB04-30__bin.28 85.84170633 0.92837417 128 1673637 36.67 17336 SAMN36690557 SRR25394774 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB04-30__bin.7 90.49803408 0.723023154 129 2552582 55.97 35167 SAMN36690557 SRR25394774 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB04-30__bin.21 83.58674464 0.730994152 416 2823011 70.26 9534 SAMN36690557 SRR25394774 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB04-30__bin.15 86.62790698 1.453488372 309 2795743 69.05 12977 SAMN36690557 SRR25394774 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB04-30__bin.30 96.45833333 0 170 2463505 59.84 21608 SAMN36690557 SRR25394774 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB04-30__bin.45 92.60598408 3.358585859 314 2954044 68.24 16370 SAMN36690557 SRR25394774 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-28__bin.25 MASTER_WP4_FFoQSI_2__VB04-29__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium sp900163665 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB04-30__bin.42 75.41648464 4.155744867 404 2386920 64.3 6896 SAMN36690557 SRR25394774 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB03-30__bin.18 MASTER_WP4_FFoQSI_2__VB03-30__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB04-30__bin.29 90.97859327 0.917431193 43 3126090 65.39 102959 SAMN36690557 SRR25394774 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;CmP2 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB04-30__bin.10 91.42857143 2.884615385 563 6475149 69.18 18479 SAMN36690557 SRR25394774 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.28 MASTER_WP4_FFoQSI_1__KM-2D__bin.28 Actinomycetota;Actinomycetes;Streptosporangiales;Streptosporangiaceae;Nocardiopsis Nocardiopsis sp900143625 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB04-30__bin.23 89.63685015 1.720183486 209 2227832 65.7 14470 SAMN36690557 SRR25394774 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB04-30__bin.34 85.27131783 0.581395349 192 2699763 68.39 20120 SAMN36690557 SRR25394774 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB04-30__bin.20 51.19617225 1.754385965 640 2102662 68.98 3663 SAMN36690557 SRR25394774 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.36 MASTER_WP4_FFoQSI_3__VB04-30__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium stercoravium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB04-30__bin.11 53.7037037 1.072124756 209 2679079 68.63 22272 SAMN36690557 SRR25394774 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.14 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB04-30__bin.12 89.8 0.6 306 30693265 58.02 154420 SAMN36690557 SRR25394774 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-23__bin.4 65.51724138 0 39 723867 51.07 29667 SAMN36690246 SRR25394867 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-24__bin.4 58.95439107 0.291120815 105 909726 39.96 11311 SAMN36690247 SRR25394866 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-25__bin.3 57.00630762 0.135163236 95 920895 39.66 14409 SAMN36690248 SRR25394865 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-25__bin.5 51.72413793 0 39 626333 50.88 23314 SAMN36690248 SRR25394865 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-25__bin.4 54.78428035 1.005981452 738 2244072 51.9 3181 SAMN36690248 SRR25394865 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967688__bin.2 MASTER_WP4_FFoQSI_3__VB07-25__bin.4 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-25__bin.1 89.35070865 1.369863014 715 3275092 39.01 5640 SAMN36690248 SRR25394865 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_312 MASTER_WP4_FFoQSI_3__VB14-25__bin.11 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter baumannii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-26__bin.7 56.89655172 0 56 867291 50.43 25364 SAMN36690249 SRR25394864 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-26__bin.3 61.48282482 1.187214612 766 2145340 39.07 2908 SAMN36690249 SRR25394864 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_312 MASTER_WP4_FFoQSI_3__VB07-26__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter baumannii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-29__bin.13 92.73255814 2.034883721 478 3407667 63.45 9665 SAMN36690566 SRR25395085 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-29__bin.19 82.87270121 1.666666667 274 2103227 55.64 9469 SAMN36690566 SRR25395085 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-29__bin.12 89.4834308 0.701754386 171 1977846 55.26 16141 SAMN36690566 SRR25395085 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-29__bin.8 92.97135706 1.522988506 204 3115978 55.34 24515 SAMN36690566 SRR25395085 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-29__bin.15 95.68318318 1.666666667 338 2637794 67.23 11607 SAMN36690566 SRR25395085 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-29__bin.21 99.22969188 0.280112045 173 2389368 59.21 28680 SAMN36690566 SRR25395085 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-29__bin.10 84.24408015 4.095170943 303 1664236 36.65 7691 SAMN36690566 SRR25395085 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-29__bin.7 84.41186107 1.785714286 258 2288101 55.85 11562 SAMN36690566 SRR25395085 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-29__bin.11 89.0503876 0.775193798 366 2799454 68.99 11310 SAMN36690566 SRR25395085 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-29__bin.6 73.51388889 0 445 2080305 60.01 5468 SAMN36690566 SRR25395085 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_3__VB07-29__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-29__bin.26 89.2248062 2.519379845 559 4928176 68.89 14365 SAMN36690566 SRR25395085 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-29__bin.25 91.4411315 2.44648318 256 2326053 65.66 13412 SAMN36690566 SRR25395085 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-30__bin.30 96.80555556 1.666666667 324 2760852 32.65 11625 SAMN36690567 SRR25395084 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-30__bin.34 78.56589147 1.162790698 408 2558286 63.62 8061 SAMN36690567 SRR25395084 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-30__bin.42 95.54099746 1.051352494 175 2650225 43.83 21467 SAMN36690567 SRR25395084 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy5_bin.lin.34 MASTER_WP4_FFoQSI_3__VB07-30__bin.42 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-30__bin.36 92.47372372 1.051051051 361 2404357 67.23 9004 SAMN36690567 SRR25395084 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-30__bin.23 85.78251184 1.364522417 381 3184876 70.86 12807 SAMN36690567 SRR25395084 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-29__bin.23 MASTER_WP4_FFoQSI_2__VB11-29__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp030457675 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-30__bin.18 90.12605042 0.700280112 184 1968241 59.17 17371 SAMN36690567 SRR25395084 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-30__bin.38 91.61486055 1.548269581 171 1564783 36.56 12472 SAMN36690567 SRR25395084 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-30__bin.19 53.30599815 1.268115942 319 955619 33.98 3177 SAMN36690567 SRR25395084 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2239_73323__bin.32 MASTER_WP4_FFoQSI_3__VB07-30__bin.19 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-30__bin.41 97.88732394 0.176056338 237 2502788 28.38 19401 SAMN36690567 SRR25395084 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB07-30__bin.41 MASTER_WP4_FFoQSI_3__VB07-30__bin.41 Bacillota;Clostridia;Tissierellales;SIT17;Anaeromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-30__bin.14 67.87516383 0.192951798 193 1726726 55.65 10349 SAMN36690567 SRR25395084 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-30__bin.10 88.2751938 0 334 2405257 69.1 10654 SAMN36690567 SRR25395084 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-30__bin.32 94.51388889 0.416666667 215 2300432 59.98 13960 SAMN36690567 SRR25395084 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-30__bin.39 96.94444444 0 340 2932113 73 12096 SAMN36690567 SRR25395084 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-30__bin.20 93.53815937 2.28956229 359 3337778 68.04 13539 SAMN36690567 SRR25395084 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-28__bin.25 MASTER_WP4_FFoQSI_2__VB04-29__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium sp900163665 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-30__bin.31 96.70542636 2.374031008 349 4803112 69.06 25866 SAMN36690567 SRR25395084 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-30__bin.29 93.50152905 3.671545071 88 3181307 63.64 89870 SAMN36690567 SRR25395084 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB03-30__bin.18 MASTER_WP4_FFoQSI_2__VB03-30__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-30__bin.6 83.30439056 0.630733945 269 1951842 65.81 10650 SAMN36690567 SRR25395084 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-30__bin.46 79.68992248 0.19379845 236 2782703 68.33 19309 SAMN36690567 SRR25395084 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-30__bin.45 95.92826355 1.041666667 138 3113333 62.62 35837 SAMN36690567 SRR25395084 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB07-30__bin.45 MASTER_WP4_FFoQSI_3__VB07-30__bin.45 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Halomonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-30__bin.1 98.70689655 0.915948276 87 3414612 54.11 93936 SAMN36690567 SRR25395084 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-30__bin.24 57.89473684 0.292397661 90 1458125 55.64 27886 SAMN36690567 SRR25395084 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB07-30__bin.25 86.39475132 3.187613843 160 1797856 43.68 16478 SAMN36690567 SRR25395084 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB07-30__bin.25 MASTER_WP4_FFoQSI_3__VB07-30__bin.25 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium putridalgicola cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB08-29__bin.8 96.66666667 4.305555556 311 2839953 32.74 14797 SAMN36690570 SRR25395081 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB08-29__bin.37 78.31445353 0.440528634 269 2146768 55.6 9330 SAMN36690570 SRR25395081 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB08-29__bin.54 91.61793372 1.754385965 177 1713826 55.09 15958 SAMN36690570 SRR25395081 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB08-29__bin.12 95.53106826 2.260702261 207 2272343 65.9 21945 SAMN36690570 SRR25395081 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB08-29__bin.49 84.14521665 0.755040755 342 2956546 68.95 11995 SAMN36690570 SRR25395081 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_2__P2570__bin.32 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB08-29__bin.31 94.18168168 1.216216216 355 2559112 67.2 10395 SAMN36690570 SRR25395081 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB08-29__bin.51 92.91316527 0.56022409 272 2246682 59.23 10512 SAMN36690570 SRR25395081 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB08-29__bin.57 89.12568306 0.72859745 208 1883059 36.52 13044 SAMN36690570 SRR25395081 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB08-29__bin.21 74.81220657 1.291079812 595 2207732 28.69 4311 SAMN36690570 SRR25395081 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB07-30__bin.41 MASTER_WP4_FFoQSI_3__VB08-29__bin.21 Bacillota;Clostridia;Tissierellales;SIT17;Anaeromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB08-29__bin.4 62.15833835 4.028697572 479 1377036 36.83 3027 SAMN36690570 SRR25395081 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_2__bin.27 MASTER_WP4_FFoQSI_3__VB08-29__bin.4 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus koreensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB08-29__bin.30 91.64482307 1.135867191 150 2882151 56.1 34532 SAMN36690570 SRR25395081 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB08-29__bin.52 66.87412977 1.26705653 243 2196115 70.08 13933 SAMN36690570 SRR25395081 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB08-29__bin.32 86.53100775 0.581395349 297 2709884 68.93 14164 SAMN36690570 SRR25395081 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB08-29__bin.35 95.83333333 3.488372093 327 4351185 69.16 28132 SAMN36690570 SRR25395081 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB08-29__bin.19 90.74923547 1.376146789 52 3335430 65.33 95130 SAMN36690570 SRR25395081 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;CmP2 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB08-29__bin.18 96.43274854 1.364522417 177 2974974 61.11 35342 SAMN36690570 SRR25395081 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__PU007_71775__bin.44 MASTER_WP4_UNINA_1__PU007_71775__bin.44 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB08-29__bin.7 66.48902821 1.724137931 429 2789280 68.26 8997 SAMN36690570 SRR25395081 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB08-29__bin.9 95.32163743 0.643274854 51 2677344 65.74 141946 SAMN36690570 SRR25395081 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.48 MASTER_WP4_FFoQSI_3__VB13-29__bin.48 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB08-29__bin.20 94.47044335 1.293103448 96 3300236 54.11 79651 SAMN36690570 SRR25395081 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB08-29__bin.55 91.72470042 4.715634607 775 4485124 68.71 8061 SAMN36690570 SRR25395081 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.53 MASTER_WP4_FFoQSI_1__VB-08-AG__bin.53 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Gordonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB08-29__bin.27 79.74463468 1.482758621 674 2444503 69.08 4154 SAMN36690570 SRR25395081 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_629 MASTER_WP4_FFoQSI_3__VB08-29__bin.27 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Xanthomonadaceae;Luteimonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-23__bin.8 61.83355735 0.126262626 92 1225267 35.08 22930 SAMN36690254 SRR25394858 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-23__bin.11 97.35449735 0 84 1405659 37.98 24910 SAMN36690254 SRR25394858 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_FFoQSI_3__VB09-26__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-23__bin.6 90.88744589 0.216450216 99 1426030 50.99 20692 SAMN36690254 SRR25394858 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_2__VB05-21__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-24__bin.4 97.35449735 0 85 1377863 37.99 22534 SAMN36690255 SRR25394857 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_FFoQSI_3__VB09-26__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-25__bin.3 96.2962963 0 83 1393881 37.98 26442 SAMN36690256 SRR25394856 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_FFoQSI_3__VB09-26__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-26__bin.4 100 0 85 1453788 37.99 24630 SAMN36690257 SRR25394855 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_FFoQSI_3__VB09-26__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-27__bin.4 90.78282828 1.075268817 258 1311706 37.95 6696 SAMN36690572 SRR25395079 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_FFoQSI_3__VB09-26__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-27__bin.5 90.28384279 0.145560408 36 1504540 39.31 75187 SAMN36690572 SRR25395079 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 SomervilleV_2019__SRS3593113__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-27__bin.1 88.71940773 0.454545455 221 1444400 50.95 7871 SAMN36690572 SRR25395079 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_2__VB05-21__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-27__bin.3 96.35220126 0.440251572 43 2030072 39.15 78213 SAMN36690572 SRR25395079 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 WalshL_xxxx__V9__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-29__bin.5 88.55809753 0.993377483 345 2101837 35.63 8783 SAMN36690573 SRR25395077 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 MASTER_WP4_FFoQSI_1__DC18-032__bin.14 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-29__bin.14 57.44808055 1.138032305 241 1449859 55.37 6970 SAMN36690573 SRR25395077 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-29__bin.26 89.80506823 0.438596491 181 1802396 55.19 17455 SAMN36690573 SRR25395077 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-29__bin.23 95.95194368 1.220538721 224 2234926 65.92 18826 SAMN36690573 SRR25395077 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-29__bin.28 93.51898102 0.808913309 193 2494377 44.02 17597 SAMN36690573 SRR25395077 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy5_bin.lin.34 MASTER_WP4_FFoQSI_3__VB07-30__bin.42 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-29__bin.48 97.34195402 1.293103448 144 3251980 55.29 37549 SAMN36690573 SRR25395077 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-29__bin.6 96.90690691 0.900900901 275 2826535 67.79 16404 SAMN36690573 SRR25395077 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 FalardeauJ_2023__SRR20811223__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-29__bin.9 92.87317621 4.559483726 385 2605709 68.64 9400 SAMN36690573 SRR25395077 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 160 160 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-29__bin.34 90.07078507 0.825825826 338 2648687 67.25 11204 SAMN36690573 SRR25395077 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-29__bin.17 96.53916211 3.857663284 168 2167257 36.48 18895 SAMN36690573 SRR25395077 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Ruoffia Ruoffia tabacinasalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-29__bin.33 67.87962963 2.147550777 362 1533722 32.53 4918 SAMN36690573 SRR25395077 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_3__VB09-29__bin.33 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-29__bin.38 88.57699805 1.169590643 467 3142464 70.83 10598 SAMN36690573 SRR25395077 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-29__bin.23 MASTER_WP4_FFoQSI_2__VB11-29__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp030457675 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-29__bin.27 90.16821536 0.591985428 202 1747705 36.57 12144 SAMN36690573 SRR25395077 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-29__bin.18 91.30434783 3.260869565 263 1847882 33.95 9345 SAMN36690573 SRR25395077 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2239_73323__bin.32 MASTER_WP4_CSIC_1__P2239_73323__bin.32 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-29__bin.45 75.86206897 0.862068966 235 2186905 28.37 15397 SAMN36690573 SRR25395077 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB07-30__bin.41 MASTER_WP4_FFoQSI_3__VB07-30__bin.41 Bacillota;Clostridia;Tissierellales;SIT17;Anaeromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-29__bin.32 93.50775194 1.937984496 397 2888116 68.95 10556 SAMN36690573 SRR25395077 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-29__bin.1 94.58333333 2.083333333 227 2534305 59.74 16402 SAMN36690573 SRR25395077 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-29__bin.24 92.11840629 4.07046657 441 3420930 67.97 12692 SAMN36690573 SRR25395077 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-28__bin.25 MASTER_WP4_FFoQSI_2__VB04-29__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium sp900163665 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-29__bin.19 87.9969419 1.448776758 228 3928369 65.29 39678 SAMN36690573 SRR25395077 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 MASTER_WP4_FFoQSI_1__VB-08-BD__bin.60 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;CmP2 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-29__bin.41 76.03729604 0.839160839 496 1828274 30.09 4284 SAMN36690573 SRR25395077 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-30__bin.23 MASTER_WP4_FFoQSI_3__VB09-29__bin.41 Bacillota;Clostridia;Tissierellales;Tissierellaceae;Tissierella_A NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-29__bin.43 85.03898635 3.118908382 638 2995075 70.37 5863 SAMN36690573 SRR25395077 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M15__bin.31 MASTER_WP4_FFoQSI_1__VB-16-M15__bin.31 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Gulosibacter Gulosibacter sp900163695 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-30__bin.59 82.09302326 1.356589147 454 2599562 63.52 7317 SAMN36690574 SRR25395076 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-30__bin.54 75.47758285 0.779727096 98 1170518 54.52 20179 SAMN36690574 SRR25395076 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-30__bin.56 95.78359351 0.619288119 279 2155099 65.93 13161 SAMN36690574 SRR25395076 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-30__bin.40 86.99154021 0.366300366 188 2221653 44.09 16034 SAMN36690574 SRR25395076 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy5_bin.lin.34 MASTER_WP4_FFoQSI_3__VB07-30__bin.42 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-30__bin.63 95.27953854 2.729885057 230 3489540 53.61 24161 SAMN36690574 SRR25395076 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.20 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-30__bin.61 96.04885057 0.431034483 156 3087335 55.41 36439 SAMN36690574 SRR25395076 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-30__bin.62 94.01587302 1.428571429 379 3192415 43.66 10986 SAMN36690574 SRR25395076 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2G__bin.45 MASTER_WP4_FFoQSI_1__KM-2G__bin.45 Bacteroidota;Bacteroidia;Sphingobacteriales;Sphingobacteriaceae;Sphingobacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-30__bin.46 94.42942943 1.253753754 320 2659669 67.85 13898 SAMN36690574 SRR25395076 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 FalardeauJ_2023__SRR20811223__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-30__bin.38 95.14845424 3.156565657 334 2568446 68.73 11717 SAMN36690574 SRR25395076 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 160 160 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-30__bin.39 93.1493994 1.081081081 348 2546165 67.24 10286 SAMN36690574 SRR25395076 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-30__bin.34 94.86456314 2.992453812 150 2066940 36.54 21341 SAMN36690574 SRR25395076 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Ruoffia Ruoffia tabacinasalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-30__bin.60 60.76851852 1.990740741 273 1231935 32.45 5704 SAMN36690574 SRR25395076 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_3__VB09-30__bin.60 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-30__bin.41 80.61403509 0 368 2672602 70.86 10854 SAMN36690574 SRR25395076 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-29__bin.23 MASTER_WP4_FFoQSI_2__VB11-29__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp030457675 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-30__bin.33 86.90904283 2.204007286 195 1582059 36.47 11414 SAMN36690574 SRR25395076 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-30__bin.15 77.74294671 0 164 1857586 33.83 19706 SAMN36690574 SRR25395076 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2239_73323__bin.32 MASTER_WP4_CSIC_1__P2239_73323__bin.32 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-30__bin.47 95.07042254 1.254401408 229 2184638 28.4 14851 SAMN36690574 SRR25395076 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB07-30__bin.41 MASTER_WP4_FFoQSI_3__VB07-30__bin.41 Bacillota;Clostridia;Tissierellales;SIT17;Anaeromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-30__bin.16 84.52520189 4.678362573 434 3718086 69.59 13536 SAMN36690574 SRR25395076 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB09-30__bin.16 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-30__bin.36 93.50775194 0.581395349 406 3035220 68.83 11636 SAMN36690574 SRR25395076 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-30__bin.7 89.79166667 0.833333333 260 2451690 59.82 12582 SAMN36690574 SRR25395076 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-30__bin.27 92.25589226 4.613013249 408 3074725 68.24 13838 SAMN36690574 SRR25395076 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-28__bin.25 MASTER_WP4_FFoQSI_2__VB04-29__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium sp900163665 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-30__bin.8 62.01379787 1.671035387 546 1946513 64.28 4061 SAMN36690574 SRR25395076 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB03-30__bin.18 MASTER_WP4_FFoQSI_3__VB09-30__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-30__bin.13 95.8041958 1.864801865 248 2344502 29.88 13831 SAMN36690574 SRR25395076 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-30__bin.23 MASTER_WP4_FFoQSI_3__VB09-30__bin.13 Bacillota;Clostridia;Tissierellales;Tissierellaceae;Tissierella_A NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-30__bin.11 95.58406345 2.74137931 288 3179822 68.72 16178 SAMN36690574 SRR25395076 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_629 MAG_629 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Xanthomonadaceae;Luteimonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-30__bin.31 90.36062378 4.288499025 504 3404949 70.62 9336 SAMN36690574 SRR25395076 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M15__bin.31 MASTER_WP4_FFoQSI_1__VB-16-M15__bin.31 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Gulosibacter Gulosibacter sp900163695 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-30__bin.37 60.34482759 0 71 1889255 64.28 100913 SAMN36690574 SRR25395076 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 MASTER_WP4_FFoQSI_1__VB-08-BD__bin.60 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;CmP2 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-30__bin.24 94.11189571 4.895889915 355 2672544 33.28 10165 SAMN36690574 SRR25395076 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-09-AG__bin.31 MASTER_WP4_FFoQSI_1__VB-09-AG__bin.31 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;Psychroflexus Psychroflexus halocasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB09-30__bin.51 93.4 0.1 1566 27270958 50.02 24761 SAMN36690574 SRR25395076 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-09-BD__bin.42 MASTER_WP4_FFoQSI_1__VB-09-BD__bin.42 Ascomycota;Sordariomycetes;Hypocreales;Nectriaceae;Fusarium Fusarium domesticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB10-24__bin.1 94.56521739 0 46 2770898 46.36 95013 SAMN36690259 SRR25394853 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB10-24__bin.3 50 0 32 554570 50.86 27567 SAMN36690259 SRR25394853 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB11-24__bin.2 63.79310345 0 19 1415353 46.55 157925 SAMN36690263 SRR25395169 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB11-24__bin.1 50 0 36 633054 50.93 27783 SAMN36690263 SRR25395169 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB12-23__bin.5 82.08503545 1.110417966 143 1396753 39.35 13711 SAMN36690266 SRR25395166 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB12-23__bin.2 88.04347826 0 35 2355249 46.41 125164 SAMN36690266 SRR25395166 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB12-23__bin.1 85.71428571 0 69 1197183 50.89 26554 SAMN36690266 SRR25395166 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB12-24__bin.1 94.26249393 0.295279684 160 1522507 39.35 13382 SAMN36690267 SRR25395165 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB12-24__bin.2 99.45652174 0 40 2847185 46.4 102877 SAMN36690267 SRR25395165 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB12-24__bin.3 61.03896104 0 48 826330 50.91 26554 SAMN36690267 SRR25395165 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_2__VB05-21__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB12-25__bin.8 82.06521739 0 32 2164668 46.49 125138 SAMN36690268 SRR25395164 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB12-25__bin.4 98.61819728 1.812996032 253 5145133 57.97 34501 SAMN36690268 SRR25395164 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_19 MAG_19 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella pneumoniae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB12-27__bin.5 91.61156166 0.145560408 154 1484546 39.52 13699 SAMN36690584 SRR25395065 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB12-27__bin.10 75.54347826 0 39 2299707 46.34 109354 SAMN36690584 SRR25395065 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB12-27__bin.12 65.51724138 0 48 775774 51.11 28666 SAMN36690584 SRR25395065 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB12-27__bin.3 75.94379353 1.698369565 539 1846021 43.13 3773 SAMN36690584 SRR25395065 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 MASTER_WP4_FFoQSI_3__VB12-27__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB12-27__bin.6 94.0545809 1.033138402 239 2014507 55.11 12888 SAMN36690584 SRR25395065 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB12-27__bin.11 91.16699432 3.826998689 325 2665413 55.96 12419 SAMN36690584 SRR25395065 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB12-27__bin.15 96.89922481 1.744186047 473 3445287 68.4 10607 SAMN36690584 SRR25395065 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_3__VB12-27__bin.15 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB12-28__bin.4 89.79621543 0.218340611 160 1453014 39.59 12708 SAMN36690585 SRR25395064 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB12-28__bin.5 99.45652174 0 43 2856983 46.38 153346 SAMN36690585 SRR25395064 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB12-28__bin.6 65.51724138 0 43 762156 51.13 28662 SAMN36690585 SRR25395064 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-23__bin.1 69.3772094 0.357662716 118 1199154 39.69 14679 SAMN36690269 SRR25395163 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-23__bin.4 95.61384125 0.650527009 320 2697928 46.49 13045 SAMN36690269 SRR25395163 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-23__bin.2 95.77922078 0 108 1535588 50.78 23015 SAMN36690269 SRR25395163 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_2__VB05-21__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-24__bin.8 70.9856519 0.145560408 125 1175487 39.74 13072 SAMN36690270 SRR25395162 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-24__bin.6 56.89655172 0 18 1202972 46.61 125259 SAMN36690270 SRR25395162 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-25__bin.3 74.52450267 0.644624662 123 1216155 39.71 12657 SAMN36690271 SRR25395161 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-25__bin.1 76.63043478 0 30 2023797 46.47 148979 SAMN36690271 SRR25395161 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-25__bin.5 85.71428571 0 60 1120210 50.99 28666 SAMN36690271 SRR25395161 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-26__bin.4 93.78353088 0.488667083 176 1534579 39.42 11793 SAMN36690272 SRR25395160 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-26__bin.7 53.17028986 0.543478261 29 1487941 46.27 82740 SAMN36690272 SRR25395160 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-26__bin.6 50 0 15 550373 46.98 56242 SAMN36690272 SRR25395160 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-26__bin.3 52.96909492 1.545253863 534 1427904 36.51 2743 SAMN36690272 SRR25395160 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967702__bin.3 MASTER_WP4_FFoQSI_3__VB14-26__bin.5 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Kurthia Kurthia gibsonii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-26__bin.1 68.10344828 1.724137931 950 3686067 58.43 4501 SAMN36690272 SRR25395160 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_19 MASTER_WP4_FFoQSI_3__VB13-26__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella pneumoniae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-27__bin.3 97.13003396 0.972135579 173 1663186 39.22 14002 SAMN36690588 SRR25395061 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-27__bin.1 99.45652174 0 50 2849931 46.41 94925 SAMN36690588 SRR25395061 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-27__bin.2 97.07792208 0 115 1670190 50.43 22408 SAMN36690588 SRR25395061 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-28__bin.1 91.72636376 0.669577875 171 1527600 39.32 12647 SAMN36690589 SRR25395060 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-28__bin.3 86.95652174 0 34 2307375 46.5 109354 SAMN36690589 SRR25395060 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-28__bin.2 87.01298701 0 81 1284035 50.83 28257 SAMN36690589 SRR25395060 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-29__bin.34 99.44444444 2.777777778 177 3015138 32.81 43264 SAMN36690590 SRR25395059 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-29__bin.17 94.67054264 0.581395349 213 3803444 63.27 47010 SAMN36690590 SRR25395059 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_FFoQSI_3__VB13-30__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-29__bin.10 94.93243243 0.900900901 282 2727494 67.05 15363 SAMN36690590 SRR25395059 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-29__bin.16 98.52941176 0.840336134 93 2482039 59.08 65370 SAMN36690590 SRR25395059 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-29__bin.11 91.87261296 3.051001821 219 1700356 36.5 11678 SAMN36690590 SRR25395059 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-29__bin.39 94.56521739 2.495059289 136 1923778 34.4 23305 SAMN36690590 SRR25395059 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2239_73323__bin.32 MASTER_WP4_CSIC_1__P2239_73323__bin.32 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-29__bin.14 54.56476627 1.22324159 188 1821975 56.61 14523 SAMN36690590 SRR25395059 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-29__bin.20 92.69005848 0.584795322 285 2987380 70.2 18342 SAMN36690590 SRR25395059 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-29__bin.6 91.66666667 0 324 2819454 68.86 13649 SAMN36690590 SRR25395059 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-29__bin.43 85.48611111 1.666666667 279 2290008 59.94 11776 SAMN36690590 SRR25395059 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-29__bin.29 97.77777778 2.5 281 3046170 73.1 16842 SAMN36690590 SRR25395059 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-29__bin.35 61.32198228 4.069767442 1114 3583611 68.96 3539 SAMN36690590 SRR25395059 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 MASTER_WP4_FFoQSI_3__VB13-29__bin.35 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-29__bin.40 97.17125382 3.211009174 168 3936021 65.18 66284 SAMN36690590 SRR25395059 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;CmP2 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-29__bin.7 65.27290448 0.779727096 531 2132846 61.57 4626 SAMN36690590 SRR25395059 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__PU007_71775__bin.44 MASTER_WP4_FFoQSI_3__VB13-29__bin.7 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-29__bin.44 88.38302752 3.497706422 258 2227762 65.87 13499 SAMN36690590 SRR25395059 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-29__bin.19 81.9324474 1.453488372 220 2699195 68.41 21311 SAMN36690590 SRR25395059 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-29__bin.48 98.24561404 0.584795322 41 2855982 65.41 183332 SAMN36690590 SRR25395059 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.48 MASTER_WP4_FFoQSI_3__VB13-29__bin.48 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-29__bin.36 98.68125701 1.276655443 189 2911738 69.03 27640 SAMN36690590 SRR25395059 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.36 MASTER_WP4_FFoQSI_3__VB13-29__bin.36 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium stercoravium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-29__bin.50 95.03232759 1.023706897 104 3283830 54.13 77881 SAMN36690590 SRR25395059 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-29__bin.13 98.36065574 3.752276867 136 2882756 37.49 52231 SAMN36690590 SRR25395059 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-06-AD__bin.9 MASTER_WP4_FFoQSI_1__VB-06-AD__bin.9 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;NA NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-29__bin.37 53.21637427 0.584795322 139 1229840 55.71 14309 SAMN36690590 SRR25395059 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-29__bin.27 63.42985843 3.693693694 920 2469712 71.36 2822 SAMN36690590 SRR25395059 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.12 MASTER_WP4_FFoQSI_3__VB13-29__bin.27 Actinomycetota;Actinomycetes;Actinomycetales;Dermatophilaceae;Janibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-29__bin.24 97.02797203 3.146853147 279 2586796 30.29 15753 SAMN36690590 SRR25395059 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-30__bin.23 MASTER_WP4_FFoQSI_3__VB13-30__bin.23 Bacillota;Clostridia;Tissierellales;Tissierellaceae;Tissierella_A NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-29__bin.22 98.77835951 0.959860384 231 4060574 68.65 30361 SAMN36690590 SRR25395059 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-30__bin.31 MASTER_WP4_FFoQSI_3__VB13-30__bin.31 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Arachnia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-29__bin.32 97.36842105 0 34 2630462 61.87 206342 SAMN36690590 SRR25395059 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.32 MASTER_WP4_FFoQSI_3__VB13-29__bin.32 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Dermabacter Dermabacter sp943913905 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-29__bin.38 92.7027027 0.810810811 114 3865584 70.7 52794 SAMN36690590 SRR25395059 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-30__bin.32 MASTER_WP4_FFoQSI_3__VB13-30__bin.32 Actinomycetota;Actinomycetes;Actinomycetales;Dermatophilaceae;Ornithinicoccus NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-30__bin.17 70.69145759 1.527777778 648 2385737 32.42 4345 SAMN36690591 SRR25395319 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_3__VB13-30__bin.17 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-30__bin.18 95.05813953 0 164 3678582 63.2 56216 SAMN36690591 SRR25395319 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_FFoQSI_3__VB13-30__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-30__bin.1 87.3294347 1.072124756 154 1555853 55.09 18563 SAMN36690591 SRR25395319 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-30__bin.16 98.76126126 1.332582583 197 2838101 67.07 26553 SAMN36690591 SRR25395319 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-30__bin.6 98.94957983 0 56 2553802 59.01 80829 SAMN36690591 SRR25395319 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-30__bin.29 86.95652174 2.309782609 187 1427905 37.96 10362 SAMN36690591 SRR25395319 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2239_73323__bin.20 MASTER_WP4_FFoQSI_1__VB-06-BG__bin.35 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-30__bin.8 95.07214626 4.189435337 187 1727417 36.5 12801 SAMN36690591 SRR25395319 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-30__bin.30 94.07114625 1.902173913 110 1777192 34.11 27992 SAMN36690591 SRR25395319 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2239_73323__bin.32 MASTER_WP4_CSIC_1__P2239_73323__bin.32 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-30__bin.13 51.72413793 0 82 1091492 55.21 21007 SAMN36690591 SRR25395319 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-30__bin.22 90.05847953 0.877192982 289 3098469 70.21 19480 SAMN36690591 SRR25395319 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-30__bin.5 89.34108527 1.162790698 292 2752276 68.92 14861 SAMN36690591 SRR25395319 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-30__bin.19 85.77380952 1.666666667 290 2176766 59.92 11033 SAMN36690591 SRR25395319 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-30__bin.25 97.36111111 0.416666667 274 3078135 73.07 18458 SAMN36690591 SRR25395319 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-30__bin.7 95.64220183 1.605504587 174 2469569 65.57 21052 SAMN36690591 SRR25395319 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-30__bin.10 71.50193798 1.453488372 294 2509405 68.41 12706 SAMN36690591 SRR25395319 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-30__bin.11 70.1754386 0 13 1324603 65.51 192583 SAMN36690591 SRR25395319 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.48 MASTER_WP4_FFoQSI_3__VB13-29__bin.48 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-30__bin.2 67.96877505 2.370931538 641 2129982 69.14 3634 SAMN36690591 SRR25395319 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.36 MASTER_WP4_FFoQSI_3__VB13-29__bin.36 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium stercoravium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-30__bin.20 94.40373563 1.346982759 99 3221375 54.14 79650 SAMN36690591 SRR25395319 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-30__bin.23 95.97902098 0.699300699 188 2145967 29.7 19675 SAMN36690591 SRR25395319 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-30__bin.23 MASTER_WP4_FFoQSI_3__VB13-30__bin.23 Bacillota;Clostridia;Tissierellales;Tissierellaceae;Tissierella_A NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-30__bin.31 98.2547993 0.436300175 178 3802781 68.62 38765 SAMN36690591 SRR25395319 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-30__bin.31 MASTER_WP4_FFoQSI_3__VB13-30__bin.31 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Arachnia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-30__bin.33 96.78362573 0 26 2621795 61.9 206512 SAMN36690591 SRR25395319 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.32 MASTER_WP4_FFoQSI_3__VB13-29__bin.32 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Dermabacter Dermabacter sp943913905 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB13-30__bin.32 96.57657658 0.990990991 206 3806226 70.93 28094 SAMN36690591 SRR25395319 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-30__bin.32 MASTER_WP4_FFoQSI_3__VB13-30__bin.32 Actinomycetota;Actinomycetes;Actinomycetales;Dermatophilaceae;Ornithinicoccus NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB14-24__bin.1 61.72627712 0.925348305 105 978713 39.69 13287 SAMN36690274 SRR25395157 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB14-24__bin.2 51.72413793 0 27 535746 51.02 27783 SAMN36690274 SRR25395157 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB14-25__bin.4 58.62068966 0 26 1085882 46.5 61870 SAMN36690275 SRR25395156 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB14-25__bin.7 82.26168975 0.883002208 639 2172040 36.54 3835 SAMN36690275 SRR25395156 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967702__bin.3 MASTER_WP4_FFoQSI_3__VB14-25__bin.7 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Kurthia Kurthia gibsonii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB14-25__bin.2 97.79816454 1.481492218 471 4943283 58.02 16842 SAMN36690275 SRR25395156 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_19 MASTER_WP4_FFoQSI_3__VB14-25__bin.2 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella pneumoniae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB14-25__bin.11 98.05936073 1.979642314 514 3700217 38.57 11063 SAMN36690275 SRR25395156 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_312 MASTER_WP4_FFoQSI_3__VB14-25__bin.11 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter baumannii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB14-26__bin.9 64.88355167 0.717404866 94 1099720 39.66 18321 SAMN36690276 SRR25395155 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB14-26__bin.4 88.14197166 0.99025974 266 1650229 36.45 8772 SAMN36690276 SRR25395155 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 MASTER_WP4_FFoQSI_3__VB14-26__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB14-26__bin.5 73.50993377 1.876379691 84 1825710 36.53 32203 SAMN36690276 SRR25395155 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967702__bin.3 MASTER_WP4_FFoQSI_3__VB14-26__bin.5 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Kurthia Kurthia gibsonii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB14-27__bin.5 71.31888126 0.841737714 137 1127677 39.53 10830 SAMN36690593 SRR25395316 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB14-27__bin.1 65.51724138 0 13 1398212 46.72 157925 SAMN36690593 SRR25395316 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB14-27__bin.7 65.51724138 0 47 785845 50.98 28512 SAMN36690593 SRR25395316 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB14-28__bin.7 65.51724138 0 11 1289789 46.8 157925 SAMN36690594 SRR25395315 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB15-29__bin.34 69.35185185 3.888888889 383 1835971 32.69 5544 SAMN36690600 SRR25395309 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB15-29__bin.38 58.54651163 2.713178295 240 1718264 63.05 9289 SAMN36690600 SRR25395309 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB15-29__bin.19 51.36363636 2.586206897 1101 4550056 69.54 5029 SAMN36690600 SRR25395309 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 MASTER_WP4_FFoQSI_3__VB15-29__bin.19 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB15-29__bin.36 59.64912281 0 6 837651 54.25 188272 SAMN36690600 SRR25395309 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB15-29__bin.8 92.31981982 0.720720721 271 2534246 67.23 13059 SAMN36690600 SRR25395309 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB15-29__bin.39 73.17850638 1.639344262 238 1607437 36.5 8500 SAMN36690600 SRR25395309 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 MASTER_WP4_FFoQSI_3__VB15-29__bin.39 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Ruoffia Ruoffia tabacinasalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB15-29__bin.17 96.8487395 0.420168067 64 2457396 59.05 83121 SAMN36690600 SRR25395309 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_FFoQSI_1__KM-4D__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB15-29__bin.21 73.27586207 0 161 1423208 37.81 10445 SAMN36690600 SRR25395309 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2239_73323__bin.20 MASTER_WP4_FFoQSI_1__VB-06-BG__bin.35 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB15-29__bin.50 62.57053292 3.448275862 162 1097032 36.36 8547 SAMN36690600 SRR25395309 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB15-29__bin.9 63.97662735 0.294888598 155 1361778 55.7 9962 SAMN36690600 SRR25395309 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB15-29__bin.40 61.44200627 0 348 2651325 70.3 11929 SAMN36690600 SRR25395309 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB15-29__bin.23 83.43023256 0.872093023 285 2368633 69.12 12042 SAMN36690600 SRR25395309 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB15-29__bin.10 94.79166667 0.416666667 146 2367950 59.94 23105 SAMN36690600 SRR25395309 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB15-29__bin.29 90.41666667 4.583333333 472 3081684 72.87 9252 SAMN36690600 SRR25395309 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB15-29__bin.49 77.5862069 4.310344828 279 3179070 35.46 20033 SAMN36690600 SRR25395309 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB15-29__bin.14 90.50664452 1.744186047 287 4058921 69.24 26895 SAMN36690600 SRR25395309 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB15-29__bin.3 65.51724138 0 275 1825322 65.93 8468 SAMN36690600 SRR25395309 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB15-29__bin.43 67.57751938 1.065891473 486 2262089 65.8 5513 SAMN36690600 SRR25395309 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 MASTER_WP4_FFoQSI_2__VB15-29__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB15-29__bin.28 91.13372093 1.744186047 205 2711654 68.46 22474 SAMN36690600 SRR25395309 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB15-29__bin.35 94.70108696 4.81884058 181 2707316 37.54 21161 SAMN36690600 SRR25395309 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-06-AD__bin.9 MASTER_WP4_FFoQSI_1__VB-06-AD__bin.9 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;NA NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB15-29__bin.42 95.15503876 0.581395349 122 4887234 68.93 94311 SAMN36690600 SRR25395309 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1D__bin.27 MASTER_WP4_FFoQSI_1__KM-1D__bin.27 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB15-29__bin.33 55.830721 4.310344828 835 4547937 69.94 6845 SAMN36690600 SRR25395309 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB15-29__bin.33 MASTER_WP4_FFoQSI_3__VB15-29__bin.33 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_FFoQSI_3__VB15-29__bin.18 83 0.4 2184 28489490 58.11 16855 SAMN36690600 SRR25395309 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS001_71775__bin.20 98.125 0 124 2161978 45.96 30225 SAMN40695663 SRR28523115 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_UNINA_1__AS001_71775__bin.20 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS001_71775__bin.15 86.03773585 1.037735849 54 2030046 34.88 123138 SAMN40695663 SRR28523115 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS001_71775__bin.11 98.94179894 0.264550265 111 1969082 37.62 57426 SAMN40695663 SRR28523115 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS001_71775__bin.1 88.42405403 0.597484277 158 2056340 35.34 23452 SAMN40695663 SRR28523115 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS001_71775__bin.8 96.2962963 2.160493827 143 2751083 44.81 33425 SAMN40695663 SRR28523115 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__AS001_71775__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS001_71775__bin.3 78.77757721 1.308900524 433 2018308 54.13 5456 SAMN40695663 SRR28523115 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic MASTER_WP4_UNINA_1__AS001_71775__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS001_71775__bin.13 84.50421627 4.797619048 486 1918453 43.67 4426 SAMN40695663 SRR28523115 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__AS001_71775__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS001_71775__bin.18 96.4673913 1.086956522 155 2472171 43.03 26058 SAMN40695663 SRR28523115 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 MASTER_WP4_UNINA_1__AS211_71775__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS001_71775__bin.7 67.24723186 0.708382527 260 1053498 51.54 4338 SAMN40695663 SRR28523115 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_1__AS001_71775__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS003_73417__bin.4 91.80726314 1.320754717 182 2060311 35.08 19813 SAMN40695664 SRR28523114 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS003_73417__bin.9 83.5978836 0 14 1406333 37.86 167130 SAMN40695664 SRR28523114 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS003_73417__bin.3 50.39725861 0.242600679 82 848902 40.16 12778 SAMN40695664 SRR28523114 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS003_73417__bin.7 73.85057471 0 222 1951711 35.17 13369 SAMN40695664 SRR28523114 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS005_71775__bin.6 93.93284642 0.377358491 196 2233830 34.98 21911 SAMN40695668 SRR28523108 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS005_71775__bin.8 91.86604912 2.380952381 315 1312865 38.2 5115 SAMN40695668 SRR28523108 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS005_71775__bin.5 95.79710145 0.954026824 307 2389590 46.69 10334 SAMN40695668 SRR28523108 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS005_71775__bin.2 95.95494112 0.793650794 66 1728608 39.13 57663 SAMN40695668 SRR28523108 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS005_71775__bin.1 76.26921218 1.183127572 417 1724689 36.82 5062 SAMN40695668 SRR28523108 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KharnaiorP_2023__SRR22859379__bin.8 MASTER_WP4_UNINA_1__AS005_71775__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS005_71775__bin.4 89.93506494 0 62 1490858 50.65 39941 SAMN40695668 SRR28523108 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS006_71775__bin.4 94.69567864 0.377358491 234 2261635 34.95 20178 SAMN40695665 SRR28523113 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS006_71775__bin.10 71.29049112 1.724137931 445 2034334 46.81 5531 SAMN40695665 SRR28523113 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_UNINA_1__AS006_71775__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS006_71775__bin.1 51.08695652 0 36 1621953 46.64 60839 SAMN40695665 SRR28523113 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 DeFilippisF_xxxx__DF_96__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS006_71775__bin.8 95.5026455 1.785714286 306 2005572 38.75 9330 SAMN40695665 SRR28523113 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS006_71775__bin.6 60.34482759 0 29 1141488 46.81 81882 SAMN40695665 SRR28523113 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 ODFM-BA-A-0135-001_Lactobacillus_rhamnosus_DPC_7102 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS006_71775__bin.5 58.625 0.3125 17 558765 43.97 36725 SAMN40695665 SRR28523113 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS006_71775__bin.7 62.8 0 1896 7257625 41.91 4390 SAMN40695665 SRR28523113 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__AS006_71775__bin.7 MASTER_WP4_UNINA_1__AS006_71775__bin.7 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Torulaspora Torulaspora delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS102_71775__bin.1 93.51186853 0 87 2288185 34.97 56895 SAMN40695661 SRR28523117 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS102_71775__bin.5 58.20327699 0.769927536 481 1297312 47.04 2766 SAMN40695661 SRR28523117 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_UNINA_1__AS102_71775__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS107_71775__bin.18 97.9245283 1.572327044 191 2125811 34.95 20067 SAMN40695657 SRR28523121 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS107_71775__bin.6 89.03396484 0 104 1305695 38.01 21230 SAMN40695657 SRR28523121 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_FFoQSI_3__VB09-26__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS107_71775__bin.14 93.93115942 0.108695652 135 2316957 46.71 30386 SAMN40695657 SRR28523121 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS107_71775__bin.8 59.1954023 0 496 2172210 35.32 5782 SAMN40695657 SRR28523121 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_UNINA_1__AS107_71775__bin.8 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS107_71775__bin.5 54.76328904 0 660 1764353 63.4 2776 SAMN40695657 SRR28523121 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_UNINA_1__AS107_71775__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS107_71775__bin.12 96.70592251 0.264550265 55 1568365 39.29 47259 SAMN40695657 SRR28523121 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS107_71775__bin.7 97.07792208 0 59 1598386 50.48 42037 SAMN40695657 SRR28523121 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS107_71775__bin.1 79.72708566 0.663313136 882 4033026 60.43 5625 SAMN40695657 SRR28523121 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__AS107_71775__bin.1 MASTER_WP4_UNINA_1__AS107_71775__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E paracarnis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS107_71775__bin.17 98.77300613 0 53 1786231 36.97 67690 SAMN40695657 SRR28523121 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_012396435.1_ASM1239643v1_genomic GCF_012396435.1_ASM1239643v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella hellenica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS111_71775__bin.6 89.50943396 0.660377358 72 2253490 34.8 59468 SAMN40695659 SRR28523119 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS111_71775__bin.10 84.76275815 0 39 1508912 37.79 85832 SAMN40695659 SRR28523119 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS111_71775__bin.8 71.87664277 1.203703704 413 1781307 32.72 5040 SAMN40695659 SRR28523119 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS111_71775__bin.3 62.63565891 0.775193798 288 1718105 63.16 7875 SAMN40695659 SRR28523119 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_UNINA_1__AS111_71775__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS111_71775__bin.5 52.63157895 0 43 767965 39.22 28432 SAMN40695659 SRR28523119 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS111_71775__bin.16 93.18181818 0 38 1489919 50.68 56320 SAMN40695659 SRR28523119 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS112_71775__bin.6 94.58105092 0.566037736 155 1945093 35.06 23512 SAMN40695666 SRR28523110 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS112_71775__bin.7 90.88979917 1.499118166 304 1472576 37.89 6053 SAMN40695666 SRR28523110 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_UNINA_1__AS112_71775__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS112_71775__bin.4 93.94155844 1.53030303 162 1675636 64.38 17584 SAMN40695666 SRR28523110 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_296__bin.3 CM_UNINA_FFOOD__FFOOD_296__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS112_71775__bin.12 97.76412357 0 86 1607834 39.38 29521 SAMN40695666 SRR28523110 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS112_71775__bin.13 53.44827586 0 26 952124 46.67 73562 SAMN40695666 SRR28523110 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS112_71775__bin.9 70.50304332 0 227 1089826 50.97 5738 SAMN40695666 SRR28523110 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_1__AS112_71775__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS112_71775__bin.14 54.64723087 2.45675049 547 1628312 42.18 3202 SAMN40695666 SRR28523110 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO004_71775__bin.8 MASTER_WP4_UNINA_1__AS112_71775__bin.14 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_A Enterococcus A gilvus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS202_73417__bin.5 100 0.529100529 25 2024627 37.66 207800 SAMN40695662 SRR28523116 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS202_73417__bin.3 83.60348652 0.436681223 245 1268022 39.46 6225 SAMN40695662 SRR28523116 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 FontanaF_2023__SRR20746838__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS202_73417__bin.1 98.91304348 0.675863991 83 2941273 46.68 59667 SAMN40695662 SRR28523116 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS202_73417__bin.2 97.73484848 0.696969697 59 1916549 63.72 55919 SAMN40695662 SRR28523116 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_296__bin.3 CM_UNINA_FFOOD__FFOOD_296__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS202_73417__bin.4 74.98917457 1.891049463 602 1891003 30.37 3315 SAMN40695662 SRR28523116 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0172-001_Clostridium_tyrobutyricum_FAM22553 ODFM-BA-A-0172-001_Clostridium_tyrobutyricum_FAM22553 Bacillota;Clostridia;Clostridiales;Clostridiaceae;Clostridium_B Clostridium B tyrobutyricum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS202_73417__bin.7 90.58441558 0 51 1533394 50.24 50354 SAMN40695662 SRR28523116 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS202_73417__bin.6 69.13793103 0 863 3231123 61.45 4335 SAMN40695662 SRR28523116 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2184_73322__bin.5 MASTER_WP4_UNINA_1__AS202_73417__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E sp012985465 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS207_73417__bin.3 100 1.41509434 76 2463423 34.78 76888 SAMN40695658 SRR28523120 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS207_73417__bin.7 98.02867384 0 84 1354379 38.05 24912 SAMN40695658 SRR28523120 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_FFoQSI_3__VB09-26__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS207_73417__bin.4 65.51724138 0 127 959572 39.82 10838 SAMN40695658 SRR28523120 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS207_73417__bin.6 66.24869383 2.586206897 410 1822819 35.1 5268 SAMN40695658 SRR28523120 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_UNINA_1__AS207_73417__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS207_73417__bin.10 99.81225465 0 56 1675810 39.32 45124 SAMN40695658 SRR28523120 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS207_73417__bin.5 57.7173913 0 36 1350638 46.75 54261 SAMN40695658 SRR28523120 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS211_71775__bin.9 67.1957672 0.017067759 33 1173229 37.78 86235 SAMN40695660 SRR28523118 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS211_71775__bin.3 75.88819227 0 248 2032127 35.16 13571 SAMN40695660 SRR28523118 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS211_71775__bin.12 98.64130435 1.358695652 149 2697890 42.97 29910 SAMN40695660 SRR28523118 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 MASTER_WP4_UNINA_1__AS211_71775__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS211_71775__bin.2 89.40913767 0.925925926 241 1664370 37.12 10419 SAMN40695660 SRR28523118 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KharnaiorP_2023__SRR22859379__bin.8 MASTER_WP4_UNINA_1__AS211_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS212_71775__bin.11 97.26415094 0.503144654 152 2051594 35 27987 SAMN40695667 SRR28523109 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS212_71775__bin.3 94.53262787 0.705467372 187 1476359 38.02 10901 SAMN40695667 SRR28523109 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS212_71775__bin.7 60.34482759 0 23 1204434 39.36 88582 SAMN40695667 SRR28523109 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS212_71775__bin.1 82.62332195 1.499118166 270 1812802 38.47 9636 SAMN40695667 SRR28523109 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS212_71775__bin.4 83.11688312 0 27 1089242 50.86 70508 SAMN40695667 SRR28523109 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS212_71775__bin.12 94.29943364 0.034698126 41 1916954 36.38 176149 SAMN40695667 SRR28523109 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS14-28__bin.1 MASTER_WP4_UNINA_1__AS212_71775__bin.12 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus uberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__AS212_71775__bin.14 59.48275862 1.724137931 498 1610476 36.62 3511 SAMN40695667 SRR28523109 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_385__bin.9 MASTER_WP4_UNINA_1__AS212_71775__bin.14 Bacteroidota;Bacteroidia;Flavobacteriales;Weeksellaceae;Kaistella Kaistella haifensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CF008_71775__bin.1 99.24528302 0.377358491 51 2353256 35.05 95896 SAMN40695718 SRR28523287 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CF008_71775__bin.14 63.95159792 1.522784281 277 1623955 46.78 7502 SAMN40695718 SRR28523287 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746827__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CF008_71775__bin.9 95.7318892 3.194444444 157 2393275 42.48 26122 SAMN40695718 SRR28523287 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CF008_71775__bin.5 97.45181759 2.876712329 286 2839606 38.18 16495 SAMN40695718 SRR28523287 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MagliuloR_2024__SRR28235359__bin.3 MASTER_WP4_UNINA_1__CF008_71775__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CF008_71775__bin.3 92.95657468 3.764322917 516 2104312 43.79 4581 SAMN40695718 SRR28523287 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__CF008_71775__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CF008_71775__bin.10 75.97402597 0 13 940316 50.91 121726 SAMN40695718 SRR28523287 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CF008_71775__bin.12 85.73216735 1.916152263 331 1395711 37.25 5271 SAMN40695718 SRR28523287 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KharnaiorP_2023__SRR22859379__bin.8 MASTER_WP4_UNINA_1__CF008_71775__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CF008_71775__bin.11 97.32988803 0.968992248 39 1772617 34.9 119453 SAMN40695718 SRR28523287 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__CF008_71775__bin.11 MASTER_WP4_UNINA_1__CF008_71775__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus gasseri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CM008_71775__bin.19 98.10606061 0 81 2142688 35.09 40685 SAMN40695704 SRR28523069 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CM008_71775__bin.9 80.92382311 1.95164437 486 2074676 47.02 5062 SAMN40695704 SRR28523069 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_UNINA_1__CM008_71775__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CM008_71775__bin.20 95.28733766 1.325757576 268 1769092 64.11 9243 SAMN40695704 SRR28523069 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_296__bin.3 CM_UNINA_FFOOD__FFOOD_296__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CM008_71775__bin.16 83.90625 1.5625 82 2200364 42.61 44810 SAMN40695704 SRR28523069 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CM008_71775__bin.7 97.74305556 0.3125 114 2267267 41.82 37236 SAMN40695704 SRR28523069 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CM008_71775__bin.8 53.02940115 0.545454545 403 1160326 58.43 3088 SAMN40695704 SRR28523069 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_290__bin.1 MASTER_WP4_UNINA_1__CM008_71775__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia crudilactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CM008_71775__bin.4 56.83539945 0 66 919690 38.66 24956 SAMN40695704 SRR28523069 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CM008_71775__bin.21 99.375 0.416666667 57 2204365 49.48 68639 SAMN40695704 SRR28523069 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_003946095.1_ASM394609v1_genomic MASTER_WP4_UNINA_1__CM008_71775__bin.21 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus lindianensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CS001_71775__bin.3 53.44827586 0 81 1018836 47.07 22132 SAMN40695706 SRR28523066 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 AlvarezOrdonezA_xxxx__Q02-30__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CS001_71775__bin.14 76.0917569 2.621722846 309 1458966 39.67 5461 SAMN40695706 SRR28523066 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_270__bin.3 MASTER_WP4_UNINA_1__CS001_71775__bin.14 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus suis AA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CS001_71775__bin.11 51.72413793 0 83 938104 36.47 18102 SAMN40695706 SRR28523066 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CS001_71775__bin.12 78.02092143 0.686641698 120 1385793 37.77 20162 SAMN40695706 SRR28523066 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 MASTER_WP4_UNINA_1__PM012_71775__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CS001_71775__bin.18 97.1875 0.625 113 2047783 44.57 25965 SAMN40695706 SRR28523066 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CS001_71775__bin.16 99.3369709 0.504298942 113 4605979 50.86 64914 SAMN40695706 SRR28523066 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967688__bin.2 MASTER_WP4_FFoQSI_2__VB04-25__bin.7 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CS001_71775__bin.7 81.88528486 3.453038674 188 1454343 37.4 11010 SAMN40695706 SRR28523066 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308520__bin.4 YouL_2022__SRR13308520__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CS001_71775__bin.4 94.58157142 0.672949136 213 2412782 38.23 17741 SAMN40695706 SRR28523066 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS12-29__bin.6 MASTER_WP4_TEAGASC_1__TGS12-29__bin.6 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B faecium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CS001_71775__bin.6 92.56979091 0.505050505 401 4192227 59.07 19372 SAMN40695706 SRR28523066 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__CS001_71775__bin.6 MASTER_WP4_UNINA_1__CS001_71775__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E lundensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CS001_71775__bin.13 88.3299285 4.915730337 528 2428157 38.04 5439 SAMN40695706 SRR28523066 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746834__bin.2 MASTER_WP4_UNINA_1__CS001_71775__bin.13 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B durans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CS005_71775__bin.3 57.53379081 0.145560408 56 869041 39.82 22876 SAMN40695707 SRR28523065 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CS005_71775__bin.5 89.16211293 0.546448087 94 1384339 53.38 21350 SAMN40695707 SRR28523065 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 FontanaF_2023__SRR20746839__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CS005_71775__bin.4 81.99310076 0.792564657 395 3805599 61.37 12626 SAMN40695707 SRR28523065 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2184_73322__bin.5 MASTER_WP4_UNINA_1__CS005_71775__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E sp012985465 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CS007_71775__bin.8 69.67512107 1.326776056 404 1467830 47.11 4038 SAMN40695705 SRR28523068 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_UNINA_1__CS007_71775__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CS007_71775__bin.15 98.41010439 0.585284281 90 2878294 46.61 64907 SAMN40695705 SRR28523068 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 MASTER_WP4_UNINA_1__CS007_71775__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CS007_71775__bin.4 97.1875 2.083333333 164 2620128 42.33 27766 SAMN40695705 SRR28523068 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_61__bin.3 DeFilippisF_xxxx__DF_61__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus dabitei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CS007_71775__bin.13 51.72413793 0 511 1544508 38.51 3188 SAMN40695705 SRR28523068 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MagliuloR_2024__SRR28235359__bin.3 MASTER_WP4_UNINA_1__CS007_71775__bin.13 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CS007_71775__bin.10 92.85714286 0.683526999 215 1611024 36.66 10923 SAMN40695705 SRR28523068 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__CS007_71775__bin.7 53.4375 1.25 194 1841657 44.86 12536 SAMN40695705 SRR28523068 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FF007_71775__bin.1 87.71022172 2.095552297 205 2026347 34.83 16595 SAMN40695719 SRR28523286 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FF007_71775__bin.2 93.20652174 0 37 2682157 46.41 109491 SAMN40695719 SRR28523286 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FF007_71775__bin.4 92.14846272 2.830188679 338 2437619 35.34 11089 SAMN40695719 SRR28523286 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO001_71775__bin.3 97.24867725 2.028218695 208 1715384 37.99 13298 SAMN40695701 SRR28523072 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic FontanaF_2023__SRR20746925__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO001_71775__bin.10 90.10917031 1.018922853 135 1448902 39.51 18244 SAMN40695701 SRR28523072 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO001_71775__bin.2 90.83333333 1.805555556 358 2811602 32.82 13414 SAMN40695701 SRR28523072 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO001_71775__bin.9 51.72413793 0 14 868986 46.67 77221 SAMN40695701 SRR28523072 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746915__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO001_71775__bin.11 98.9375 0.208333333 59 2378698 43.8 88122 SAMN40695701 SRR28523072 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO001_71775__bin.7 97.5974026 0.12987013 110 1665811 50.25 18929 SAMN40695701 SRR28523072 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_1__FO001_71775__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO005_71775__bin.9 67.58005822 0.20014556 104 1079349 39.88 14746 SAMN40695703 SRR28523070 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO005_71775__bin.13 97.82608696 0.135869565 64 2766724 46.53 73394 SAMN40695703 SRR28523070 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746915__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO005_71775__bin.27 98.45679012 3.114478114 83 3082277 44.74 64937 SAMN40695703 SRR28523070 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FontanaF_2023__SRR20746957__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO005_71775__bin.24 86.1627907 1.744186047 511 3123203 63.51 8518 SAMN40695703 SRR28523070 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO005_71775__bin.16 97.74122807 1.221804511 257 2547472 67.49 16379 SAMN40695703 SRR28523070 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO005_71775__bin.8 97.72727273 0.649350649 159 2018209 36.2 23628 SAMN40695703 SRR28523070 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746915__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO005_71775__bin.19 98.22321429 0.089285714 99 2174005 43.85 57320 SAMN40695703 SRR28523070 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO005_71775__bin.26 81.15153109 3.713768116 423 1855201 43.55 4991 SAMN40695703 SRR28523070 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 MASTER_WP4_UNINA_1__FO005_71775__bin.26 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO005_71775__bin.14 87.76803119 0.994152047 363 3535642 70.33 14370 SAMN40695703 SRR28523070 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__771_Tarentaise__bin.3 MASTER_WP4_UNINA_1__FO005_71775__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium tyrofermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO005_71775__bin.21 88.76407244 1.395007342 291 2357001 55.65 11595 SAMN40695703 SRR28523070 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO005_71775__bin.1 97.97979798 1.851851852 230 2249720 65.91 19248 SAMN40695703 SRR28523070 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO005_71775__bin.15 95.02714929 1.392704518 301 2651998 43.93 12325 SAMN40695703 SRR28523070 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy5_bin.lin.34 MASTER_WP4_TEAGASC_1__TGS04-29__bin.14 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO005_71775__bin.7 97.34465871 4.166666667 311 2698488 68.66 14036 SAMN40695703 SRR28523070 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 160 160 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO005_71775__bin.12 82.4243607 3.460837887 394 1970609 36.68 6026 SAMN40695703 SRR28523070 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 MASTER_WP4_UNINA_1__FO005_71775__bin.12 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Ruoffia Ruoffia tabacinasalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO005_71775__bin.17 94.26387069 0.764525994 257 3264284 56.37 21909 SAMN40695703 SRR28523070 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_114__bin.22 MASTER_WP4_UNINA_1__FO005_71775__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO007_71775__bin.16 79.85082305 3.034979424 370 2188257 45.05 6695 SAMN40695699 SRR28523074 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__FO007_71775__bin.16 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO007_71775__bin.49 94.44444444 0.833333333 65 2618680 32.88 95385 SAMN40695699 SRR28523074 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO007_71775__bin.47 85.75581395 4.031007752 465 2744161 63.62 7405 SAMN40695699 SRR28523074 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO007_71775__bin.8 58.62068966 1.724137931 229 1106163 46.7 5550 SAMN40695699 SRR28523074 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_UNINA_1__FO007_71775__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO007_71775__bin.59 59.3837535 0.840336134 103 1149755 59.3 23251 SAMN40695699 SRR28523074 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__FO011_71775__bin.8 MASTER_WP4_UNINA_1__FO011_71775__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO007_71775__bin.52 90.9985119 2.224702381 367 1947964 43.79 6123 SAMN40695699 SRR28523074 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__FO007_71775__bin.52 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO007_71775__bin.45 80.52370031 0.458715596 119 2714826 66.87 37856 SAMN40695699 SRR28523074 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2558__bin.5 MASTER_WP4_CSIC_2__P2558__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Arthrobacter_H Arthrobacter H sp030452125 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO007_71775__bin.19 94.15584416 0 64 1541378 50.55 35298 SAMN40695699 SRR28523074 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_1__FO007_71775__bin.19 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO007_71775__bin.18 99.43181818 2.188552189 208 2255916 65.92 20052 SAMN40695699 SRR28523074 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO007_71775__bin.1 81.78319502 0.708128079 238 2955323 53.55 17787 SAMN40695699 SRR28523074 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.20 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO007_71775__bin.55 68.10344828 1.724137931 224 2479577 55.55 16967 SAMN40695699 SRR28523074 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO007_71775__bin.43 92.76094276 2.777777778 290 2372454 68.89 12504 SAMN40695699 SRR28523074 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 160 160 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO007_71775__bin.14 91.36452242 2.485380117 271 3309834 70.96 20076 SAMN40695699 SRR28523074 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-29__bin.23 MASTER_WP4_FFoQSI_2__VB11-29__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp030457675 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO007_71775__bin.34 93.7896071 0.990594357 223 2829069 36.11 21919 SAMN40695699 SRR28523074 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We4_bin.full.28 We4_bin.full.28 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;Mesonia Mesonia profundi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO007_71775__bin.10 73.05881439 0.503144654 326 1502825 39.33 5765 SAMN40695699 SRR28523074 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2230_73323__bin.3 MASTER_WP4_UNINA_1__FO007_71775__bin.10 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus dysgalactiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO007_71775__bin.5 74.29467085 0 164 1683353 33.79 20107 SAMN40695699 SRR28523074 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2239_73323__bin.32 MASTER_WP4_CSIC_1__P2239_73323__bin.32 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO007_71775__bin.41 90.84507042 1.232394366 296 2196951 28.25 10783 SAMN40695699 SRR28523074 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB07-30__bin.41 MASTER_WP4_FFoQSI_3__VB07-30__bin.41 Bacillota;Clostridia;Tissierellales;SIT17;Anaeromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO007_71775__bin.23 92.01388889 2.202380952 278 2303300 59.92 11087 SAMN40695699 SRR28523074 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO007_71775__bin.32 100 0 82 2001232 27.3 50252 SAMN40695699 SRR28523074 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__FO007_71775__bin.32 MASTER_WP4_UNINA_1__FO007_71775__bin.32 Fusobacteriota;Fusobacteriia;Fusobacteriales;Fusobacteriaceae;Fusobacterium_B Fusobacterium B sp041668805 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO007_71775__bin.2 97.54098361 1.675774135 291 2972438 37.39 15839 SAMN40695699 SRR28523074 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__FO007_71775__bin.2 MASTER_WP4_UNINA_1__FO007_71775__bin.2 Bacteroidota;Bacteroidia;Bacteroidales;Dysgonomonadaceae;UBA2632 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO007_71775__bin.37 97.9020979 1.398601399 168 2197316 28.25 40022 SAMN40695699 SRR28523074 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__FO007_71775__bin.37 MASTER_WP4_UNINA_1__FO007_71775__bin.37 Bacillota;Clostridia;Tissierellales;Peptoniphilaceae;NA NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO007_71775__bin.38 82.78608826 2.460732984 502 2582598 63.16 6176 SAMN40695699 SRR28523074 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__FO007_71775__bin.38 MASTER_WP4_UNINA_1__FO007_71775__bin.38 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Arachnia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO007_71775__bin.9 86.17365887 1.719443108 611 2913765 36.48 5673 SAMN40695699 SRR28523074 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__FO007_71775__bin.9 MASTER_WP4_UNINA_1__FO007_71775__bin.9 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Colwellia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO011_71775__bin.24 98.625 1.25 235 3112323 39.76 24530 SAMN40695700 SRR28523073 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK027-2-G-48h-04A3_S103__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO011_71775__bin.20 53.03467457 0.106051154 86 812184 39.74 15497 SAMN40695700 SRR28523073 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO011_71775__bin.18 95.53755144 2.914951989 257 2954206 45.38 16321 SAMN40695700 SRR28523073 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__FO011_71775__bin.18 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO011_71775__bin.9 78.07217262 3 718 2629492 40.49 4121 SAMN40695700 SRR28523073 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 MASTER_WP4_UNINA_1__FO011_71775__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO011_71775__bin.17 98.79385965 0.657894737 128 2664071 67.32 39622 SAMN40695700 SRR28523073 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO011_71775__bin.10 94.51789177 0.683060109 156 1601764 53.35 14005 SAMN40695700 SRR28523073 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 FontanaF_2023__SRR20746839__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO011_71775__bin.5 96.86329588 1.19809915 186 2667769 37.75 23842 SAMN40695700 SRR28523073 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2235_73323__bin.9 MASTER_WP4_CSIC_1__P2235_73323__bin.9 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO011_71775__bin.19 73.78277154 0 59 1648999 39.46 40937 SAMN40695700 SRR28523073 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_270__bin.3 MASTER_WP4_UNINA_1__FO011_71775__bin.19 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus suis AA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO011_71775__bin.8 97.26890756 0.840336134 166 2626806 59.29 25307 SAMN40695700 SRR28523073 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__FO011_71775__bin.8 MASTER_WP4_UNINA_1__FO011_71775__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO011_71775__bin.15 60.8125 0 7 564284 43.74 137800 SAMN40695700 SRR28523073 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO013_71775__bin.7 96.73913043 0 104 1995857 42.02 54406 SAMN40695702 SRR28523071 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_UNINA_1__FO013_71775__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO013_71775__bin.3 78.25830041 0.409388646 115 1202440 39.73 14621 SAMN40695702 SRR28523071 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO013_71775__bin.10 96.73913043 0 65 2714707 46.54 70736 SAMN40695702 SRR28523071 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746915__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO013_71775__bin.6 81.99561404 0.438596491 338 1581292 67.6 6443 SAMN40695702 SRR28523071 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO013_71775__bin.5 78.86543031 1.029962547 646 2538788 36.98 4608 SAMN40695702 SRR28523071 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2235_73323__bin.9 MASTER_WP4_UNINA_1__FO013_71775__bin.5 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO013_71775__bin.9 95.72743056 1.40625 470 2099551 43.76 5204 SAMN40695702 SRR28523071 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO013_71775__bin.8 97.96195652 2.445652174 212 2568373 42.96 17411 SAMN40695702 SRR28523071 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 MASTER_WP4_UNINA_1__AS211_71775__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__FO013_71775__bin.2 99.25093633 0.374531835 106 2621918 38.05 72450 SAMN40695702 SRR28523071 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS12-29__bin.6 MASTER_WP4_UNINA_1__FO013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B faecium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO001_73417__bin.3 82.99004219 1.688500728 270 1259025 39.39 5382 SAMN40695652 SRR28523169 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 MASTER_WP4_UNINA_1__GO001_73417__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO001_73417__bin.5 73.32546793 1.587569838 786 3338883 47.26 4822 SAMN40695652 SRR28523169 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811137__bin.9 MASTER_WP4_UNINA_1__GO001_73417__bin.5 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia paralvei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO001_73417__bin.1 92.39576213 0 183 1369488 51.35 9985 SAMN40695652 SRR28523169 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO001_73417__bin.14 99.25093633 2.165639725 111 2817837 37.95 55987 SAMN40695652 SRR28523169 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746834__bin.2 FontanaF_2023__SRR20746834__bin.2 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B durans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO001_73417__bin.8 95.3 0.1 191 26608818 48.97 326597 SAMN40695652 SRR28523169 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO003_71775__bin.11 87.11857472 0.451237263 152 1359115 39.46 11703 SAMN40695653 SRR28523168 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO003_71775__bin.10 88.61111111 1.296296296 198 2403300 32.78 18981 SAMN40695653 SRR28523168 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259377__bin.4 AlvarezOrdonezA_xxxx__Q06-30__bin.11 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO003_71775__bin.1 93.61471861 0.03417635 113 1418147 51.06 16489 SAMN40695653 SRR28523168 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO003_71775__bin.2 97.26775956 0.546448087 19 2659194 35.36 281191 SAMN40695653 SRR28523168 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO003_71775__bin.2 MASTER_WP4_UNINA_1__GO003_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Carnobacterium Carnobacterium divergens A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO003_71775__bin.4 93.9 0 186 26059127 48.99 288381 SAMN40695653 SRR28523168 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO003_71775__bin.8 98.4 1.9 287 11247413 38.21 64861 SAMN40695653 SRR28523168 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO004_71775__bin.47 52.36968878 0.862965273 155 839411 39.15 6501 SAMN40695655 SRR28523124 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 MASTER_WP4_UNINA_1__GO202_71775__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO004_71775__bin.34 67.0411985 0 45 1969276 37.59 82282 SAMN40695655 SRR28523124 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2235_73323__bin.9 MASTER_WP4_CSIC_1__P2235_73323__bin.9 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO004_71775__bin.49 60.34482759 0 98 668469 51.56 8575 SAMN40695655 SRR28523124 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO004_71775__bin.8 83.61473561 2.84019975 49 3447191 42.06 125977 SAMN40695655 SRR28523124 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO004_71775__bin.8 MASTER_WP4_UNINA_1__GO004_71775__bin.8 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_A Enterococcus A gilvus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO004_71775__bin.26 58.21756225 1.26146789 361 2133839 56.3 6726 SAMN40695655 SRR28523124 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_114__bin.22 MASTER_WP4_UNINA_1__GO004_71775__bin.26 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO004_71775__bin.29 65.51724138 0 80 2261970 40.34 54848 SAMN40695655 SRR28523124 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MacoriG_2019__CS_R33__bin.1 MacoriG_2019__CS_R33__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio hibernica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO004_71775__bin.1 75.18416206 1.565377532 372 2365355 37.53 8419 SAMN40695655 SRR28523124 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__TA012_71775__bin.5 MASTER_WP4_UNINA_1__GO004_71775__bin.1 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus_D Vagococcus D salmoninarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO004_71775__bin.12 56.89655172 0 94 1117250 34.11 19115 SAMN40695655 SRR28523124 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811179__bin.4 FalardeauJ_2023__SRR20811179__bin.4 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Carnobacterium_A NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO004_71775__bin.16 53.00546448 0 22 1110184 35 175356 SAMN40695655 SRR28523124 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO004_71775__bin.16 MASTER_WP4_UNINA_1__GO004_71775__bin.16 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Jeotgalibaca NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO004_71775__bin.17 75.82781457 0.662251656 18 1744908 35.34 168402 SAMN40695655 SRR28523124 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO004_71775__bin.17 MASTER_WP4_UNINA_1__GO004_71775__bin.17 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO004_71775__bin.2 67.83216783 0 9 1029730 29.12 159038 SAMN40695655 SRR28523124 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO004_71775__bin.2 MASTER_WP4_UNINA_1__GO004_71775__bin.2 Bacillota;Clostridia;Tissierellales;Tissierellaceae;JARICQ01 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO004_71775__bin.32 66.7218543 1.324503311 19 1608280 36.9 145383 SAMN40695655 SRR28523124 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO004_71775__bin.32 MASTER_WP4_UNINA_1__GO004_71775__bin.32 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO004_71775__bin.3 74.93407173 1.265822785 602 2734661 40.01 5228 SAMN40695655 SRR28523124 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO004_71775__bin.3 MASTER_WP4_UNINA_1__GO004_71775__bin.3 Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lacrimispora NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO004_71775__bin.13 93.8 0.1 208 25912147 49.05 250412 SAMN40695655 SRR28523124 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO004_71775__bin.18 93.2 0 931 11471134 36.24 17581 SAMN40695655 SRR28523124 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO004_71775__bin.7 93.3 1.9 938 11353672 38.1 17876 SAMN40695655 SRR28523124 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO005_71775__bin.2 68.25429247 0.618631732 246 926926 39.68 4129 SAMN40695656 SRR28523122 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 DeFilippisF_xxxx__DF_59__bin.15 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO005_71775__bin.1 66.13172542 0.142401458 109 1162216 50.95 15009 SAMN40695656 SRR28523122 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO005_71775__bin.7 95.4 0.1 174 26637010 48.97 320842 SAMN40695656 SRR28523122 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO005_71775__bin.3 95.3 1.9 663 11096904 38.16 25483 SAMN40695656 SRR28523122 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO005_71775__bin.6 99.4 0.1 197 11841648 36.25 166084 SAMN40695656 SRR28523122 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO011_71775__bin.7 67.75334442 0.900655022 217 921186 39.79 5294 SAMN40695649 SRR28523172 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 MASTER_WP4_UNINA_1__GO011_71775__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO011_71775__bin.5 91.34557945 3.148148148 318 2682662 32.79 12770 SAMN40695649 SRR28523172 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259377__bin.4 AlvarezOrdonezA_xxxx__Q06-30__bin.11 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO011_71775__bin.6 96.75324675 0.108225108 115 1526232 50.84 19952 SAMN40695649 SRR28523172 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO011_71775__bin.3 86.63328197 2.5 450 1629985 68.42 4043 SAMN40695649 SRR28523172 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_58__bin.5 MASTER_WP4_UNINA_1__GO011_71775__bin.3 Deinococcota;Deinococci;Deinococcales;Thermaceae;Thermus Thermus parvatiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO011_71775__bin.10 96.1 0.1 190 26690148 48.98 276801 SAMN40695649 SRR28523172 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO011_71775__bin.13 98 0.2 232 11663351 36.25 111734 SAMN40695649 SRR28523172 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO011_71775__bin.8 89 1.6 1124 10781653 38.1 13325 SAMN40695649 SRR28523172 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO013_71775__bin.31 72.63117765 0.9643377 175 1192694 39.36 8162 SAMN40695654 SRR28523167 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 MASTER_WP4_UNINA_1__GO001_73417__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO013_71775__bin.13 89.54457364 1.889534884 496 3085157 63.03 7891 SAMN40695654 SRR28523167 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_UNINA_1__GO013_71775__bin.13 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO013_71775__bin.14 81.80461854 0 156 991001 51.72 7624 SAMN40695654 SRR28523167 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO013_71775__bin.10 70.03003495 0.114678899 236 1993912 55.94 10976 SAMN40695654 SRR28523167 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_114__bin.22 MASTER_WP4_UNINA_1__FO005_71775__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO013_71775__bin.2 92.25479712 4.742173112 441 2326751 36.17 6796 SAMN40695654 SRR28523167 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001703515.1_ASM170351v1_genomic MASTER_WP4_UNINA_1__GO013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO013_71775__bin.5 87.52675841 2.958351536 508 3145894 64.54 8734 SAMN40695654 SRR28523167 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259376__bin.8 MASTER_WP4_UNINA_1__GO013_71775__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Arthrobacter_H Arthrobacter H rhombi A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO013_71775__bin.19 96.27071823 1.104972376 166 2498119 32.57 23044 SAMN40695654 SRR28523167 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811284__bin.4 FalardeauJ_2023__SRR20811284__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Mammaliicoccus Mammaliicoccus vitulinus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO013_71775__bin.11 94.06130268 2.490421456 191 1964941 38.77 15173 SAMN40695654 SRR28523167 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO013_71775__bin.11 MASTER_WP4_UNINA_1__GO013_71775__bin.11 Bacillota;Bacilli;Staphylococcales;Salinicoccaceae;Jeotgalicoccus NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO013_71775__bin.23 76.56732892 1.876379691 418 2784058 41.05 7851 SAMN40695654 SRR28523167 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO013_71775__bin.23 MASTER_WP4_UNINA_1__GO013_71775__bin.23 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Sporosarcina Sporosarcina sp038618305 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO013_71775__bin.20 94.1 0.1 480 26287652 49.02 94867 SAMN40695654 SRR28523167 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO013_71775__bin.28 91 1.8 909 10803716 38.14 17069 SAMN40695654 SRR28523167 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO013_71775__bin.32 97 0.1 318 11482341 36.25 98379 SAMN40695654 SRR28523167 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO102_71775__bin.30 65.55232558 0 339 1729030 63.42 6201 SAMN40695650 SRR28523171 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO102_71775__bin.12 73.73294347 1.754385965 569 2777447 70.4 6101 SAMN40695650 SRR28523171 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__771_Tarentaise__bin.3 MASTER_WP4_UNINA_1__FO005_71775__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium tyrofermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO102_71775__bin.31 56.53775322 0 51 963119 32.33 48220 SAMN40695650 SRR28523171 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811284__bin.4 FalardeauJ_2023__SRR20811284__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Mammaliicoccus Mammaliicoccus vitulinus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO102_71775__bin.35 61.82474443 2.298938195 329 2333958 40.28 9858 SAMN40695650 SRR28523171 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MacoriG_2019__CS_R33__bin.1 MASTER_WP4_UNINA_1__GO102_71775__bin.35 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio hibernica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO102_71775__bin.18 58.38557994 2.586206897 413 3032837 64.8 11034 SAMN40695650 SRR28523171 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259372__bin.15 MASTER_WP4_UNINA_1__GO102_71775__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Arthrobacter_H NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO102_71775__bin.42 92.7293578 0.658038445 434 3033146 68.46 9613 SAMN40695650 SRR28523171 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO102_71775__bin.42 MASTER_WP4_UNINA_1__GO102_71775__bin.42 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Citricoccus NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO102_71775__bin.45 69.8 0.3 2906 21250444 49.07 8469 SAMN40695650 SRR28523171 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO102_71775__bin.29 52.4 1 2027 7670223 37.76 4249 SAMN40695650 SRR28523171 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MASTER_WP4_UNINA_1__GO102_71775__bin.29 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO102_71775__bin.43 96.4 0.1 294 11378016 36.26 94039 SAMN40695650 SRR28523171 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO202_71775__bin.6 88.35806295 1.106259098 175 1405374 39.59 11414 SAMN40695651 SRR28523170 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 MASTER_WP4_UNINA_1__GO202_71775__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO202_71775__bin.5 70.68965517 1.724137931 206 985749 51.79 5657 SAMN40695651 SRR28523170 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO202_71775__bin.7 95.1 0.1 195 26728794 48.94 321953 SAMN40695651 SRR28523170 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GO202_71775__bin.2 94.4 1.6 740 11199142 38.15 23040 SAMN40695651 SRR28523170 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR001_73417__bin.6 87.17023636 0.975254731 150 1440425 39.47 13916 SAMN40695696 SRR28523077 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR001_73417__bin.13 90.62192607 1.483420593 265 2206825 53.92 12744 SAMN40695696 SRR28523077 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic DeFilippisF_xxxx__DF_33__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR001_73417__bin.12 98.79385965 0 91 2516623 67.47 39860 SAMN40695696 SRR28523077 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR001_73417__bin.18 67.74019183 0 235 929998 53.5 4170 SAMN40695696 SRR28523077 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 MASTER_WP4_UNINA_1__GR001_73417__bin.18 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR001_73417__bin.17 94.55676899 0 226 1458048 36.5 8698 SAMN40695696 SRR28523077 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR001_73417__bin.15 88.96103896 0 135 1418524 50.9 13352 SAMN40695696 SRR28523077 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR001_73417__bin.19 72.94336661 1.643913538 1170 3859743 64.9 3542 SAMN40695696 SRR28523077 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__SC012_71775__bin.18 MASTER_WP4_UNINA_1__GR001_73417__bin.19 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Sphingobium Sphingobium yanoikuyae A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR001_73417__bin.10 60.46315078 2.205882353 474 1366228 36.55 3060 SAMN40695696 SRR28523077 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_385__bin.9 MASTER_WP4_UNINA_1__GR001_73417__bin.10 Bacteroidota;Bacteroidia;Flavobacteriales;Weeksellaceae;Kaistella Kaistella haifensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR001_73417__bin.3 99.25 1.71875 58 3052468 41.51 103557 SAMN40695696 SRR28523077 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GR001_73417__bin.3 MASTER_WP4_UNINA_1__GR001_73417__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus raoultii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR002_73417__bin.12 83.27059255 0.964857559 311 1380511 39.18 5423 SAMN40695695 SRR28523079 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 MASTER_WP4_UNINA_1__GR002_73417__bin.12 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR002_73417__bin.11 75.55833079 0.828970332 477 2037492 54.06 5030 SAMN40695695 SRR28523079 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic MASTER_WP4_UNINA_1__GR002_73417__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR002_73417__bin.17 93.16939891 0.546448087 90 1485611 53.35 29016 SAMN40695695 SRR28523079 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 MASTER_WP4_UNINA_1__PA207_73417__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR002_73417__bin.10 94.26406926 0 227 1529460 36.49 8956 SAMN40695695 SRR28523079 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR002_73417__bin.18 94.48051948 0 122 1524436 50.87 18232 SAMN40695695 SRR28523079 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR002_73417__bin.1 79.90233015 2.18487395 1103 4274208 64.86 4524 SAMN40695695 SRR28523079 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__SC012_71775__bin.18 MASTER_WP4_UNINA_1__SC012_71775__bin.18 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Sphingobium Sphingobium yanoikuyae A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR002_73417__bin.7 85.60677932 2.263431013 649 2859112 41.58 4921 SAMN40695695 SRR28523079 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GR002_73417__bin.7 MASTER_WP4_UNINA_1__GR002_73417__bin.7 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR003_71775__bin.6 95.80786026 1.052417398 194 1676048 39.11 11099 SAMN40695697 SRR28523076 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR003_71775__bin.3 92.8030303 0 175 1509917 36.46 12035 SAMN40695697 SRR28523076 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR003_71775__bin.2 88.90151515 0 110 1332029 51.22 16758 SAMN40695697 SRR28523076 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR003_71775__bin.4 51.09717868 0 408 2333807 47.79 6621 SAMN40695697 SRR28523076 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 YangC_2021__SRR13259374__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR012_71775__bin.2 91.81222707 0.145560408 68 1553650 39.31 36895 SAMN40695698 SRR28523075 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR012_71775__bin.6 54.8255979 0.546448087 197 760814 53.56 4291 SAMN40695698 SRR28523075 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 MASTER_WP4_UNINA_1__GR012_71775__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR012_71775__bin.5 86.68831169 0 112 1242099 51.45 14104 SAMN40695698 SRR28523075 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR012_71775__bin.10 67.93103448 0 52 1398069 48.48 52758 SAMN40695698 SRR28523075 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 CM_UNINA_FFOOD__FFOOD_415__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR111_73417__bin.2 93.54092877 0.324675325 187 1598587 36.46 11986 SAMN40695693 SRR28523081 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR111_73417__bin.5 83.44827586 0 85 2730611 47.99 51687 SAMN40695693 SRR28523081 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 MASTER_WP4_UNINA_1__GR111_73417__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR111_73417__bin.1 65.8125 1.40625 28 2581451 41.68 150377 SAMN40695693 SRR28523081 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GR001_73417__bin.3 MASTER_WP4_UNINA_1__GR001_73417__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus raoultii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR211_71775__bin.4 66.08636193 1.588911472 345 1121704 39.28 3544 SAMN40695694 SRR28523080 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 MASTER_WP4_UNINA_1__GR211_71775__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR211_71775__bin.2 68.30198537 0.862068966 568 1757472 47.04 3239 SAMN40695694 SRR28523080 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_UNINA_1__GR211_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR211_71775__bin.3 55.67458357 1.271636449 490 1702074 46.49 3824 SAMN40695694 SRR28523080 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 MASTER_WP4_UNINA_1__GR211_71775__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR211_71775__bin.9 96.59685864 1.810645724 240 2554193 53.83 19867 SAMN40695694 SRR28523080 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic DeFilippisF_xxxx__DF_33__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR211_71775__bin.10 98.13596491 1.885964912 263 2561269 67.38 14478 SAMN40695694 SRR28523080 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR211_71775__bin.8 97.51082251 0 223 1630540 36.62 10126 SAMN40695694 SRR28523080 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__GR211_71775__bin.12 88.57733176 0 103 1448367 50.8 19773 SAMN40695694 SRR28523080 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_73__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MO002_71775__bin.11 100 0 46 2056292 37.54 139143 SAMN40695673 SRR28523103 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MO002_71775__bin.20 95 1.25 126 2639288 32.85 62158 SAMN40695673 SRR28523103 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MO002_71775__bin.8 75.86206897 1.724137931 49 1276675 39.65 55497 SAMN40695673 SRR28523103 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 LeechJ_2020__ERS3967690__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MO002_71775__bin.2 85.37949811 0.625 343 1555834 44.03 5017 SAMN40695673 SRR28523103 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MO002_71775__bin.12 81.89655172 0 171 2300482 44.42 22736 SAMN40695673 SRR28523103 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MO002_71775__bin.1 53.97260274 0 30 1655806 38.48 105395 SAMN40695673 SRR28523103 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__PM002_71775__bin.13 MASTER_WP4_UNINA_1__MO002_71775__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter junii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MO002_71775__bin.7 97.3 0.1 327 11671668 36.29 91009 SAMN40695673 SRR28523103 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MO005_73417__bin.5 88.51285784 0.349344978 181 1385160 39.42 10683 SAMN40695675 SRR28523101 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MO005_73417__bin.6 82.92726719 1.635220126 361 1813473 40.22 6510 SAMN40695675 SRR28523101 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 MASTER_WP4_UNINA_1__MO005_73417__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MO005_73417__bin.1 69.59770115 1.724137931 476 2185375 47.06 5317 SAMN40695675 SRR28523101 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_325__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MO005_73417__bin.10 82.20492312 2.140151515 644 2864523 40.25 5310 SAMN40695675 SRR28523101 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 LeechJ_2020__ERS3967690__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MO005_73417__bin.2 70.25666647 0.776255708 470 1881072 39.04 4764 SAMN40695675 SRR28523101 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MagliuloR_2024__SRR28235359__bin.3 MASTER_WP4_UNINA_1__MO005_73417__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MO005_73417__bin.3 91.23376623 0 157 1628181 36.29 17409 SAMN40695675 SRR28523101 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MO005_73417__bin.9 98.9375 0 59 2359140 43.85 79031 SAMN40695675 SRR28523101 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MO005_73417__bin.12 76.948051950000007 0 34 1307847 50.46 96615 SAMN40695675 SRR28523101 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MAG_503 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MO007_73418__bin.3 93.96964164 2.51572327 385 2160377 34.86 7639 SAMN40695671 SRR28523105 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MO007_73418__bin.2 89.80262702 2.380952381 253 1386607 39.45 7356 SAMN40695671 SRR28523105 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MO007_73418__bin.8 82.09365125 2.201086957 429 1880429 46.95 4859 SAMN40695671 SRR28523105 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MO007_73418__bin.4 94.41164896 0.974025974 234 1617551 36.4 9801 SAMN40695671 SRR28523105 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MO007_73418__bin.5 51.72413793 0 17 650017 50.48 55424 SAMN40695671 SRR28523105 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MO007_73418__bin.1 52.27272727 0 33 1016682 50.2 61388 SAMN40695671 SRR28523105 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MAG_503 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MO007_73418__bin.7 96.79622142 0.306748466 222 1760061 36.86 12692 SAMN40695671 SRR28523105 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_012396435.1_ASM1239643v1_genomic GCF_012396435.1_ASM1239643v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella hellenica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MO011_71775__bin.4 84.77947324 1.443077803 322 2583943 46.64 10164 SAMN40695672 SRR28523104 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MO011_71775__bin.7 76.625 1.046401515 393 1390204 43.86 3904 SAMN40695672 SRR28523104 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO011_71775__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MO011_71775__bin.1 95.26564345 0.162337662 130 1366419 51.18 21184 SAMN40695672 SRR28523104 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MO013_71775__bin.6 52.5862069 1.724137931 350 1242364 46.71 3745 SAMN40695674 SRR28523102 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_UNINA_1__MO013_71775__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MO013_71775__bin.4 92.53246753 0 131 1586454 36.46 18675 SAMN40695674 SRR28523102 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MO013_71775__bin.8 90.70833333 2.052083333 231 1300006 43.86 6845 SAMN40695674 SRR28523102 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MO013_71775__bin.10 86.03896104 0 36 1431608 50.38 84477 SAMN40695674 SRR28523102 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MO013_71775__bin.1 96.42857143 2.001633987 191 2419872 36.73 18854 SAMN40695674 SRR28523102 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_385__bin.9 MASTER_WP4_UNINA_1__MO013_71775__bin.1 Bacteroidota;Bacteroidia;Flavobacteriales;Weeksellaceae;Kaistella Kaistella haifensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MV011_71775__bin.17 80.97826087 0 46 1261529 42.25 43158 SAMN40695720 SRR28523285 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MV011_71775__bin.4 80.830721 0 239 2009368 34.85 14266 SAMN40695720 SRR28523285 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MV011_71775__bin.11 94.97354497 2.134038801 281 1544734 37.97 6572 SAMN40695720 SRR28523285 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_UNINA_1__MV011_71775__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MV011_71775__bin.18 74.85582588 0.207943439 184 1137744 39.77 8162 SAMN40695720 SRR28523285 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MV011_71775__bin.13 81.14676236 1.581661093 349 1757792 46.84 5828 SAMN40695720 SRR28523285 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MV011_71775__bin.16 88.49041849 4.559748428 154 2074078 35.41 23922 SAMN40695720 SRR28523285 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MV011_71775__bin.5 87.92635659 1.01744186 888 3428599 63.21 4409 SAMN40695720 SRR28523285 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_UNINA_1__MV011_71775__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MV011_71775__bin.14 77.62845392 2.022012579 362 1532336 39.58 5028 SAMN40695720 SRR28523285 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.11 MASTER_WP4_UNINA_1__MV011_71775__bin.14 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A carnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MV011_71775__bin.19 86.03896104 0 36 1331100 50.7 60342 SAMN40695720 SRR28523285 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MV011_71775__bin.6 67.24137931 3.448275862 1194 3619988 60.69 3273 SAMN40695720 SRR28523285 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF54__bin.1 MASTER_WP4_UNINA_1__MV011_71775__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E paracarnis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MV011_71775__bin.12 98.1981982 0.938438438 240 3109085 67.63 25399 SAMN40695720 SRR28523285 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 FalardeauJ_2023__SRR20811223__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MV011_71775__bin.1 93.37231969 1.900584795 487 2929833 72.28 7972 SAMN40695720 SRR28523285 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__MV011_71775__bin.1 MASTER_WP4_UNINA_1__MV011_71775__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MZ011_71775__bin.6 52.91036832 1.092896175 186 664459 52.68 3681 SAMN40695721 SRR28523284 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 MagliuloR_2024__SRR28235350__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MZ011_71775__bin.2 56.03448276 0 89 741594 36.53 11477 SAMN40695721 SRR28523284 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MZ011_71775__bin.10 92.02648001 0.865800866 135 1408042 51.05 14101 SAMN40695721 SRR28523284 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__MZ011_71775__bin.5 82.17203548 3.465179175 541 1874019 36.83 3855 SAMN40695721 SRR28523284 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_385__bin.9 MASTER_WP4_UNINA_1__MZ011_71775__bin.5 Bacteroidota;Bacteroidia;Flavobacteriales;Weeksellaceae;Kaistella Kaistella haifensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA001_71775__bin.2 88.60989811 0.145560408 47 1514416 39.25 38776 SAMN40695690 SRR28523084 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA001_71775__bin.9 76.02957191 0.286835749 360 1758242 47.16 5856 SAMN40695690 SRR28523084 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_325__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA001_71775__bin.11 87.81106479 4.050422705 444 2160383 47.02 5813 SAMN40695690 SRR28523084 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 MASTER_WP4_UNINA_1__PA001_71775__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA001_71775__bin.3 91.2568306 0 64 1614741 53.14 34004 SAMN40695690 SRR28523084 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 FontanaF_2023__SRR20746839__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA001_71775__bin.8 73.3495671 0 148 1162221 36.39 11156 SAMN40695690 SRR28523084 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA001_71775__bin.1 89.93506494 0 89 1466999 50.96 22170 SAMN40695690 SRR28523084 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA001_71775__bin.4 97.81001138 1.322267039 297 5206983 64.61 27827 SAMN40695690 SRR28523084 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__SC012_71775__bin.18 MASTER_WP4_UNINA_1__SC012_71775__bin.18 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Sphingobium Sphingobium yanoikuyae A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA002_73417__bin.1 50.70362831 0.18115942 325 1162257 46.96 3806 SAMN40695689 SRR28523085 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_UNINA_1__PA002_73417__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA002_73417__bin.6 65.49634274 0 457 1689317 47.14 4046 SAMN40695689 SRR28523085 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 MASTER_WP4_UNINA_1__PA002_73417__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA002_73417__bin.2 92.67015707 1.308900524 225 2467178 53.69 17909 SAMN40695689 SRR28523085 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic DeFilippisF_xxxx__DF_33__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA002_73417__bin.5 98.79385965 0 62 2550009 67.37 69003 SAMN40695689 SRR28523085 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MASTER_WP4_UNINA_1__PA002_73417__bin.5 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA002_73417__bin.3 77.5862069 0 217 1573216 36.45 9613 SAMN40695689 SRR28523085 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA002_73417__bin.7 95.12987013 0 76 1548659 50.7 29651 SAMN40695689 SRR28523085 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA002_73417__bin.8 93.25592885 1.557971014 127 2467137 48.21 29683 SAMN40695689 SRR28523085 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 CM_UNINA_FFOOD__FFOOD_415__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA004_73417__bin.3 97.08359326 0.145560408 74 1699730 39.15 44520 SAMN40695692 SRR28523082 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA004_73417__bin.9 69.98484512 2.927191516 519 1860899 47 3937 SAMN40695692 SRR28523082 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 MASTER_WP4_UNINA_1__PA004_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA004_73417__bin.5 95.49180328 1.548269581 209 1481479 53.48 9051 SAMN40695692 SRR28523082 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 MASTER_WP4_UNINA_1__PA207_73417__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA004_73417__bin.7 95.50865801 0 206 1615062 36.49 9720 SAMN40695692 SRR28523082 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA004_73417__bin.4 96.8393425 1.131687243 159 1771256 42.32 15778 SAMN40695692 SRR28523082 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 MASTER_WP4_UNINA_1__PA011_73417__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA004_73417__bin.10 91.23376623 0 95 1517096 50.62 24659 SAMN40695692 SRR28523082 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA004_73417__bin.2 54.32260628 0.440583307 1046 2707348 64.8 2653 SAMN40695692 SRR28523082 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__SC012_71775__bin.18 MASTER_WP4_UNINA_1__PA004_73417__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Sphingobium Sphingobium yanoikuyae A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA011_73417__bin.6 92.28009981 0.194080543 54 1577279 39.28 44520 SAMN40695688 SRR28523086 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA011_73417__bin.2 90.96320346 0.324675325 209 1524546 36.41 10361 SAMN40695688 SRR28523086 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA011_73417__bin.3 99.38271605 0 28 1713026 42.51 100094 SAMN40695688 SRR28523086 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 MASTER_WP4_UNINA_1__PA011_73417__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA011_73417__bin.4 92.33766234 0.123966942 108 1405814 50.99 21398 SAMN40695688 SRR28523086 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA011_73417__bin.1 61.20775397 1.595969446 1141 3189978 64.57 2931 SAMN40695688 SRR28523086 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__SC012_71775__bin.18 MASTER_WP4_UNINA_1__PA011_73417__bin.1 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Sphingobium Sphingobium yanoikuyae A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA011_73417__bin.5 96.01449275 0 99 2475300 48.16 38821 SAMN40695688 SRR28523086 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 CM_UNINA_FFOOD__FFOOD_415__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA012_73417__bin.15 88.06033999 3.693181818 611 2413513 34.49 4393 SAMN40695691 SRR28523083 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_1__PA012_73417__bin.15 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA012_73417__bin.3 96.39737991 0.308709364 63 1683960 39.15 47274 SAMN40695691 SRR28523083 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA012_73417__bin.5 73.99981629 0.235507246 399 1479790 47.01 3955 SAMN40695691 SRR28523083 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_UNINA_1__PA012_73417__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA012_73417__bin.4 53.39030193 0.905797101 403 1365223 46.93 3706 SAMN40695691 SRR28523083 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 MASTER_WP4_UNINA_1__PA012_73417__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA012_73417__bin.10 90.12272702 1.221640489 243 2532549 53.71 15237 SAMN40695691 SRR28523083 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic DeFilippisF_xxxx__DF_33__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA012_73417__bin.1 92.62295082 0.455373406 144 1493797 53.33 14819 SAMN40695691 SRR28523083 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 MASTER_WP4_UNINA_1__PA207_73417__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA012_73417__bin.8 96.04978355 0 235 1632922 36.51 9938 SAMN40695691 SRR28523083 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA012_73417__bin.6 83.49016727 1.536796537 264 1329807 51.38 5891 SAMN40695691 SRR28523083 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_1__PA012_73417__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA012_73417__bin.13 93.97123354 2.420531352 731 4956568 64.67 9122 SAMN40695691 SRR28523083 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__SC012_71775__bin.18 MASTER_WP4_UNINA_1__SC012_71775__bin.18 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Sphingobium Sphingobium yanoikuyae A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA012_73417__bin.7 72.75664864 3.18627451 502 1590782 36.86 3368 SAMN40695691 SRR28523083 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_385__bin.9 MASTER_WP4_UNINA_1__PA012_73417__bin.7 Bacteroidota;Bacteroidia;Flavobacteriales;Weeksellaceae;Kaistella Kaistella haifensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA207_73417__bin.12 68.72270742 0.194080543 58 1201906 39.37 32785 SAMN40695687 SRR28523087 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA207_73417__bin.2 54.48275862 3.448275862 448 1413789 47.14 3238 SAMN40695687 SRR28523087 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 MASTER_WP4_UNINA_1__PA207_73417__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA207_73417__bin.1 93.16939891 0.136612022 90 1408701 53.2 28671 SAMN40695687 SRR28523087 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 MASTER_WP4_UNINA_1__PA207_73417__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA207_73417__bin.13 98.14814815 0 23 1690225 42.45 105770 SAMN40695687 SRR28523087 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 MASTER_WP4_UNINA_1__PA011_73417__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA207_73417__bin.3 89.8248721 0 99 1475891 50.86 22320 SAMN40695687 SRR28523087 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA207_73417__bin.5 78.99973 3.296526802 1218 4437933 64.63 4191 SAMN40695687 SRR28523087 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__SC012_71775__bin.18 MASTER_WP4_UNINA_1__PA207_73417__bin.5 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Sphingobium Sphingobium yanoikuyae A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA207_73417__bin.4 68.12770563 0 135 1068697 36.1 10857 SAMN40695687 SRR28523087 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 MASTER_WP4_UNINA_1__PA207_73417__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PA207_73417__bin.7 89.75068166 1.360981308 637 3390570 64.02 7058 SAMN40695687 SRR28523087 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__PA207_73417__bin.7 MASTER_WP4_UNINA_1__PA207_73417__bin.7 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Hylemonella Hylemonella delicata cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PB007_73417__bin.20 59.48275862 0 348 1367554 34.87 4813 SAMN40695640 SRR28523182 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_1__PB007_73417__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PB007_73417__bin.11 83.66814587 3.076341648 276 1371953 37.84 5750 SAMN40695640 SRR28523182 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PB007_73417__bin.30 72.30808915 1.698113208 201 1244462 40.59 7652 SAMN40695640 SRR28523182 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 FontanaF_2023__SRR20746866__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PB007_73417__bin.12 88.92210145 0.843900966 252 2089978 46.85 12334 SAMN40695640 SRR28523182 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PB007_73417__bin.1 79.95120714 2.327044025 442 1939017 35.26 5258 SAMN40695640 SRR28523182 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_UNINA_1__PB007_73417__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PB007_73417__bin.18 93.42124953 2.62345679 275 2406327 45.15 10332 SAMN40695640 SRR28523182 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_CSIC_2__P2504__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PB007_73417__bin.15 99.0625 0 39 2274230 42.58 79551 SAMN40695640 SRR28523182 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PB007_73417__bin.6 77.20026339 4.68164794 511 2442013 37.23 6009 SAMN40695640 SRR28523182 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2235_73323__bin.9 CM_UNINA_FFOOD__FFOOD_226__bin.1 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PB007_73417__bin.2 66.84823781 2.495059289 304 1662083 43.16 6345 SAMN40695640 SRR28523182 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 MASTER_WP4_UNINA_1__PB007_73417__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PB007_73417__bin.22 89.91015274 1.713836478 255 1825610 35.47 10617 SAMN40695640 SRR28523182 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_178 MAG_178 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PB007_73417__bin.29 83.71693122 0.037202381 58 3816392 51.05 93615 SAMN40695640 SRR28523182 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967688__bin.2 MAG_122 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PB007_73417__bin.9 98.57209738 1.050026752 76 2683187 32.69 64099 SAMN40695640 SRR28523182 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0136-001_Staphylococcus_aureus_18SBCL679 MASTER_WP4_UNINA_1__PB007_73417__bin.9 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus aureus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PB007_73417__bin.16 73.4082397 1.498127341 68 2220676 37.86 56145 SAMN40695640 SRR28523182 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746834__bin.2 FontanaF_2023__SRR20746834__bin.2 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B durans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PB007_73417__bin.4 86.08156028 1.182033097 65 1671626 39.59 37755 SAMN40695640 SRR28523182 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2230_73323__bin.3 MASTER_WP4_CSIC_1__P2230_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus dysgalactiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PB007_73417__bin.10 80.4964539 0.531914894 53 1713147 35.2 91467 SAMN40695640 SRR28523182 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__PB007_73417__bin.10 MASTER_WP4_UNINA_1__PB007_73417__bin.10 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus agalactiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM001_71775__bin.2 85.19122785 2.302154844 356 1968235 46.98 6422 SAMN40695643 SRR28523179 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_UNINA_1__PM001_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM001_71775__bin.5 74.19586214 1.740175585 507 2183945 46.77 4684 SAMN40695643 SRR28523179 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 MASTER_WP4_UNINA_1__PM001_71775__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM001_71775__bin.13 97.54098361 1.001821494 138 1577407 53.47 16325 SAMN40695643 SRR28523179 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 FontanaF_2023__SRR20746839__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM001_71775__bin.14 81.76755386 2.915106117 253 1489015 39.79 7961 SAMN40695643 SRR28523179 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_270__bin.3 MASTER_WP4_UNINA_1__PM012_71775__bin.16 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus suis AA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM001_71775__bin.8 93.83116883 0 133 1585393 36.53 19977 SAMN40695643 SRR28523179 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM001_71775__bin.17 87.84375 3.161616162 138 2349654 46.12 29734 SAMN40695643 SRR28523179 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_96__bin.15 DeFilippisF_xxxx__DF_96__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parafarraginis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM001_71775__bin.11 87.15809783 0.624219725 158 1466194 37.79 14986 SAMN40695643 SRR28523179 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 MASTER_WP4_UNINA_1__PM012_71775__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM001_71775__bin.6 88.87894213 4.360465116 525 2293874 34.21 5632 SAMN40695643 SRR28523179 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__CF008_71775__bin.11 MASTER_WP4_UNINA_1__CF008_71775__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus gasseri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM001_71775__bin.4 85.9375 0.138888889 41 927459 44.1 41365 SAMN40695643 SRR28523179 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM002_71775__bin.18 70.71577847 2.037617555 453 1785477 34.75 4711 SAMN40695642 SRR28523180 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_1__PM002_71775__bin.18 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM002_71775__bin.12 97.70742358 0.145560408 58 1706978 39.07 52375 SAMN40695642 SRR28523180 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 MASTER_WP4_UNINA_1__PM002_71775__bin.12 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM002_71775__bin.17 81.25538077 1.409559643 348 1906221 46.92 6482 SAMN40695642 SRR28523180 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM002_71775__bin.20 80.45977011 1.724137931 298 2417898 35 11930 SAMN40695642 SRR28523180 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM002_71775__bin.19 69.13793103 0.862068966 537 2691379 46.18 5727 SAMN40695642 SRR28523180 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 MASTER_WP4_UNINA_1__PM002_71775__bin.19 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM002_71775__bin.21 93.01327088 1.639344262 142 1532515 53.69 16138 SAMN40695642 SRR28523180 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 FontanaF_2023__SRR20746839__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM002_71775__bin.5 86.89450687 0.561797753 206 1322979 39.89 7772 SAMN40695642 SRR28523180 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_270__bin.3 FontanaF_2023__SRR20746869__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus suis AA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM002_71775__bin.4 85.63426033 2.686982181 179 1448881 37.7 11647 SAMN40695642 SRR28523180 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 MASTER_WP4_UNINA_1__PM012_71775__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM002_71775__bin.7 75.2020202 1.145833333 384 1678005 44.84 5046 SAMN40695642 SRR28523180 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM002_71775__bin.11 89.59220364 1.374684343 390 4095232 51.12 16363 SAMN40695642 SRR28523180 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967688__bin.2 MASTER_WP4_UNINA_1__PM002_71775__bin.11 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM002_71775__bin.9 70.27168234 1.724137931 212 1404013 37.57 9524 SAMN40695642 SRR28523180 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_104__bin.4 DeFilippisF_xxxx__DF_104__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus macedonicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM002_71775__bin.13 98.8879376 1.098499674 191 3407321 38.52 38591 SAMN40695642 SRR28523180 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__PM002_71775__bin.13 MASTER_WP4_UNINA_1__PM002_71775__bin.13 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter junii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM002_71775__bin.14 97.96875 1.26953125 100 1474375 37.67 22219 SAMN40695642 SRR28523180 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__PM002_71775__bin.14 MASTER_WP4_UNINA_1__PM002_71775__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kribbianus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM003_71775__bin.2 95.88456076 1.729559748 185 2372629 34.84 31228 SAMN40695644 SRR28523178 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM003_71775__bin.6 95.80551242 0.588768116 269 2266630 46.85 12344 SAMN40695644 SRR28523178 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM003_71775__bin.19 90.56682107 3.713768116 541 2545187 46.88 5683 SAMN40695644 SRR28523178 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 MASTER_WP4_UNINA_1__PM003_71775__bin.19 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM003_71775__bin.9 97.47807018 0 301 2415009 67.59 11677 SAMN40695644 SRR28523178 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM003_71775__bin.13 91.40786501 1.161202186 188 1441862 53.63 9831 SAMN40695644 SRR28523178 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 FontanaF_2023__SRR20746839__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM003_71775__bin.17 95.59765625 3.692708333 472 2315479 43.66 6019 SAMN40695644 SRR28523178 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__PM003_71775__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM003_71775__bin.11 97.3046875 0.3125 140 2151856 44.59 23394 SAMN40695644 SRR28523178 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM003_71775__bin.3 79.30434329 2.633908809 228 1464076 41.82 8034 SAMN40695644 SRR28523178 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__PM003_71775__bin.3 MASTER_WP4_UNINA_1__PM003_71775__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM003_71775__bin.5 59.6 0.2 2674 9274443 36.39 3884 SAMN40695644 SRR28523178 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__PM003_71775__bin.5 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM005_71775__bin.7 56.03448276 1.724137931 353 1182836 47.16 3695 SAMN40695647 SRR28523174 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_UNINA_1__PM005_71775__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM005_71775__bin.1 93.24074074 1.934587814 374 2702056 33.03 10809 SAMN40695647 SRR28523174 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM005_71775__bin.11 81.77278402 2.465667915 152 1852134 39.32 21396 SAMN40695647 SRR28523174 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_270__bin.3 MASTER_WP4_UNINA_1__PM012_71775__bin.16 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus suis AA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM005_71775__bin.2 92.53246753 0 142 1589793 36.43 18673 SAMN40695647 SRR28523174 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM005_71775__bin.10 93.50649351 0.899977216 108 1638455 50.67 22882 SAMN40695647 SRR28523174 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_62__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM005_71775__bin.13 98.125 0.260416667 238 2115595 44.59 11964 SAMN40695647 SRR28523174 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM005_71775__bin.5 95.90690209 0.142678794 100 1336571 44.16 22430 SAMN40695647 SRR28523174 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM005_71775__bin.6 66.95898944 1.117751217 244 1237415 41.9 6684 SAMN40695647 SRR28523174 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__PM012_71775__bin.11 MASTER_WP4_UNINA_1__PM012_71775__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM005_71775__bin.12 56.8 0 2628 8298542 36.39 3405 SAMN40695647 SRR28523174 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__PM005_71775__bin.12 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM007_71775__bin.11 57.20073473 0.800582242 89 945316 39.61 15506 SAMN40695641 SRR28523181 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM007_71775__bin.3 86.92942379 1.455234554 380 2042898 46.82 6445 SAMN40695641 SRR28523181 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM007_71775__bin.4 62.12643678 0 542 2138258 47.03 4406 SAMN40695641 SRR28523181 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 MASTER_WP4_UNINA_1__PM007_71775__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM007_71775__bin.12 76.66666667 1.863741751 304 1412455 39.43 5882 SAMN40695641 SRR28523181 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_270__bin.3 CM_UNINA_FFOOD__FFOOD_286__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus suis AA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM007_71775__bin.7 91.78473042 3.448393712 266 1613448 36.56 8587 SAMN40695641 SRR28523181 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM007_71775__bin.6 79.454939 0 182 1132424 51.55 8457 SAMN40695641 SRR28523181 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM007_71775__bin.15 97.1875 0.9375 125 2077297 44.57 25762 SAMN40695641 SRR28523181 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM007_71775__bin.2 95.83333333 2.696078431 357 2796993 33.01 12246 SAMN40695641 SRR28523181 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__PM007_71775__bin.2 MASTER_WP4_UNINA_1__PM007_71775__bin.2 Bacteroidota;Bacteroidia;Flavobacteriales;Weeksellaceae;Cloacibacterium Cloacibacterium caeni A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM007_71775__bin.9 98.29059829 0 83 2791722 63.81 50519 SAMN40695641 SRR28523181 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__PM007_71775__bin.9 MASTER_WP4_UNINA_1__PM007_71775__bin.9 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Chromobacteriaceae;Gulbenkiania Gulbenkiania mobilis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM012_71775__bin.12 95.25362319 1.946571417 316 2426201 46.99 10473 SAMN40695646 SRR28523175 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_UNINA_1__PM012_71775__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM012_71775__bin.4 73.33333333 0.865209472 214 948362 53.73 4781 SAMN40695646 SRR28523175 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 MAG_385 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM012_71775__bin.16 89.68225202 2.106741573 187 1771522 39.71 13437 SAMN40695646 SRR28523175 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_270__bin.3 MASTER_WP4_UNINA_1__PM012_71775__bin.16 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus suis AA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM012_71775__bin.2 92.76859504 0.216450216 232 1561315 36.31 8535 SAMN40695646 SRR28523175 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM012_71775__bin.21 91.45900974 2.895275298 429 2015217 43.84 5388 SAMN40695646 SRR28523175 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__PM012_71775__bin.21 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM012_71775__bin.20 92.11956522 1.086956522 192 2426092 43.23 18037 SAMN40695646 SRR28523175 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 MASTER_WP4_UNINA_1__PM012_71775__bin.20 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM012_71775__bin.5 91.26092385 0.136925617 145 1501972 37.73 13962 SAMN40695646 SRR28523175 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 MASTER_WP4_UNINA_1__PM012_71775__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM012_71775__bin.1 87.00911641 0.407608696 77 1439168 54.25 29699 SAMN40695646 SRR28523175 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009428965.1_ASM942896v1_genomic GCF_009428965.1_ASM942896v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus pontis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM012_71775__bin.18 82.78618732 0 411 2108530 71.99 7025 SAMN40695646 SRR28523175 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_286__bin.4 CM_UNINA_FFOOD__FFOOD_286__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia kristinae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM012_71775__bin.11 96.95883134 1.241699867 76 1834920 41.17 43003 SAMN40695646 SRR28523175 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__PM012_71775__bin.11 MASTER_WP4_UNINA_1__PM012_71775__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM012_71775__bin.13 68.27956989 1.138519924 680 2397858 37.11 4012 SAMN40695646 SRR28523175 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__PM012_71775__bin.13 MASTER_WP4_UNINA_1__PM012_71775__bin.13 Bacteroidota;Bacteroidia;Flavobacteriales;Weeksellaceae;Elizabethkingia Elizabethkingia meningoseptica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM013_71775__bin.23 90.55665349 0.144927536 172 2034478 46.87 18307 SAMN40695645 SRR28523177 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM013_71775__bin.17 61.20689655 1.724137931 433 1858836 32.98 5061 SAMN40695645 SRR28523177 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM013_71775__bin.6 87.21489379 2.597402597 301 1716722 36.41 7144 SAMN40695645 SRR28523177 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746829__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM013_71775__bin.13 93.67708333 2.161458333 401 2053833 43.91 5937 SAMN40695645 SRR28523177 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM013_71775__bin.20 80.24547792 1.028138528 212 1121511 51.5 6465 SAMN40695645 SRR28523177 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_62__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM013_71775__bin.12 97.3046875 0.625 151 2178085 44.55 22709 SAMN40695645 SRR28523177 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM013_71775__bin.4 100 1.225490196 123 2552352 36.74 40057 SAMN40695645 SRR28523177 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_385__bin.9 MASTER_WP4_UNINA_1__PM013_71775__bin.4 Bacteroidota;Bacteroidia;Flavobacteriales;Weeksellaceae;Kaistella Kaistella haifensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PM013_71775__bin.1 80.75664217 1.551631889 620 2241951 38.04 4028 SAMN40695645 SRR28523177 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746834__bin.2 MASTER_WP4_UNINA_1__PM013_71775__bin.1 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B durans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR003_71775__bin.4 94.42312669 2.084842995 321 2217211 46.78 10406 SAMN40695681 SRR28523094 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR003_71775__bin.6 90.74675325 0.162337662 121 1532805 50.94 17851 SAMN40695681 SRR28523094 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_62__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR003_71775__bin.5 54.31034483 1.724137931 464 1227699 36.83 2649 SAMN40695681 SRR28523094 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_385__bin.9 MASTER_WP4_UNINA_1__PR003_71775__bin.5 Bacteroidota;Bacteroidia;Flavobacteriales;Weeksellaceae;Kaistella Kaistella haifensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR004_71775__bin.11 99.25 2.5 171 2898041 39.76 43106 SAMN40695684 SRR28523091 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 DeFilippisF_xxxx__DF_79__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR004_71775__bin.1 71.00645636 0.35326087 322 1570909 46.93 5710 SAMN40695684 SRR28523091 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_CSIC_2__P2635__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR004_71775__bin.10 96.2962963 4.012345679 169 2545789 45.24 22636 SAMN40695684 SRR28523091 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FontanaF_2023__SRR20746957__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR004_71775__bin.8 88.01638237 1.221640489 244 2467901 53.86 14563 SAMN40695684 SRR28523091 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic DeFilippisF_xxxx__DF_33__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR004_71775__bin.7 92.15367965 1.734856622 219 1594578 36.49 10121 SAMN40695684 SRR28523091 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR004_71775__bin.9 89.7594697 3.28125 362 1924806 43.87 6342 SAMN40695684 SRR28523091 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__PR004_71775__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR004_71775__bin.6 66.57756433 0.717852684 118 1099797 37.69 16976 SAMN40695684 SRR28523091 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_104__bin.4 DeFilippisF_xxxx__DF_104__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus macedonicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR005_71775__bin.4 96.51041667 2.296401515 304 2788402 39.89 13535 SAMN40695685 SRR28523090 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK027-2-G-48h-04A3_S103__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR005_71775__bin.2 65.3930131 0.145560408 26 1081836 39.01 63417 SAMN40695685 SRR28523090 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR005_71775__bin.8 89.55372725 1.439790576 175 2246833 53.8 20086 SAMN40695685 SRR28523090 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic DeFilippisF_xxxx__DF_33__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR005_71775__bin.16 70.68965517 0 36 1019761 51.44 37052 SAMN40695685 SRR28523090 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_62__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR005_71775__bin.12 98.79802956 0.679975802 318 2999454 30.82 15074 SAMN40695685 SRR28523090 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0172-001_Clostridium_tyrobutyricum_FAM22553 MASTER_WP4_UNINA_1__PR005_71775__bin.12 Bacillota;Clostridia;Clostridiales;Clostridiaceae;Clostridium_B Clostridium B tyrobutyricum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR005_71775__bin.15 83.9375 0.3125 22 862345 45.2 77119 SAMN40695685 SRR28523090 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_96__bin.15 DeFilippisF_xxxx__DF_96__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parafarraginis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR006_71775__bin.4 83.81132756 4.863980716 452 1772872 34.89 4394 SAMN40695682 SRR28523093 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_1__PR006_71775__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR006_71775__bin.6 88.11191649 0.817610063 234 1817936 40.28 10326 SAMN40695682 SRR28523093 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 WalshL_xxxx__F1__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR006_71775__bin.3 83.45062405 0.946477765 286 1351518 36.12 5700 SAMN40695682 SRR28523093 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 MASTER_WP4_UNINA_1__PR006_71775__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR006_71775__bin.2 77.92207792 0 34 970988 50.9 51022 SAMN40695682 SRR28523093 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_62__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR011_71775__bin.8 89.37229437 0 105 1386206 51.05 22245 SAMN40695678 SRR28523097 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_62__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR012_71775__bin.8 61.14420063 1.724137931 322 1072362 39.65 3856 SAMN40695683 SRR28523092 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.11 MASTER_WP4_UNINA_1__PR012_71775__bin.8 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A carnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR012_71775__bin.5 91.28787879 0.146103896 157 1455597 51.01 13155 SAMN40695683 SRR28523092 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_62__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR102_71775__bin.29 86.9286754 0.254730713 46 1494422 39.08 56295 SAMN40695679 SRR28523096 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR102_71775__bin.2 90.57398932 1.530797101 168 2133608 46.86 18319 SAMN40695679 SRR28523096 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR102_71775__bin.24 58.96551724 0 113 1209855 35.61 14303 SAMN40695679 SRR28523096 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR102_71775__bin.17 90.52410681 2.777777778 197 2516414 45.09 16749 SAMN40695679 SRR28523096 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR102_71775__bin.8 98.9375 1.964285714 267 2953884 40.05 15170 SAMN40695679 SRR28523096 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 FontanaF_2023__SRR20746856__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR102_71775__bin.1 97.44140625 0 24 2209912 42.57 121706 SAMN40695679 SRR28523096 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR102_71775__bin.6 63.61413043 1.086956522 210 1489562 42.98 8007 SAMN40695679 SRR28523096 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 MASTER_WP4_UNINA_1__AS211_71775__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR102_71775__bin.12 87.53829017 3.996101365 746 4058726 70.26 7568 SAMN40695679 SRR28523096 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__771_Tarentaise__bin.3 MASTER_WP4_UNINA_1__PR102_71775__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium tyrofermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR102_71775__bin.27 79.77598566 0.277777778 29 1810280 32.44 173311 SAMN40695679 SRR28523096 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR102_71775__bin.19 53.44827586 0 337 1747369 64.59 6383 SAMN40695679 SRR28523096 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259376__bin.8 MASTER_WP4_UNINA_1__PR102_71775__bin.19 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Arthrobacter_H Arthrobacter H rhombi A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR102_71775__bin.15 58.88714734 3.448275862 352 2968961 62.34 10883 SAMN40695679 SRR28523096 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q03-30__bin.5 MASTER_WP4_UNINA_1__PR102_71775__bin.15 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR102_71775__bin.33 97.3 0 417 11616037 36.26 47182 SAMN40695679 SRR28523096 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR107_71775__bin.4 93.4373098 2.13836478 320 2509925 34.8 11672 SAMN40695676 SRR28523099 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR107_71775__bin.8 94.26229508 0.136612022 140 1602207 53.42 19477 SAMN40695676 SRR28523099 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 FontanaF_2023__SRR20746839__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR107_71775__bin.5 81.55225727 2.902141718 224 1141137 51.8 6192 SAMN40695676 SRR28523099 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__O-25.1__bin.29 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR107_71775__bin.3 88.85564697 0.589005236 47 2155236 38.39 114306 SAMN40695676 SRR28523099 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR107_71775__bin.13 95.45834871 0.292188432 95 1931006 34.75 43377 SAMN40695676 SRR28523099 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_96__bin.12 DeFilippisF_xxxx__DF_96__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus paragasseri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR202_71775__bin.6 91.23376623 0.340909091 176 1397006 51.29 12009 SAMN40695680 SRR28523095 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_62__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR202_71775__bin.2 55.17241379 3.448275862 1444 3391633 60.91 2353 SAMN40695680 SRR28523095 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF54__bin.1 MASTER_WP4_UNINA_1__PR202_71775__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E paracarnis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR207_71775__bin.3 71.86458333 3.197916667 316 1600836 46.15 5616 SAMN40695677 SRR28523098 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_UNINA_1__PR207_71775__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR207_71775__bin.22 95.5 0.625 115 2823742 39.9 35508 SAMN40695677 SRR28523098 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK027-2-G-48h-04A3_S103__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR207_71775__bin.12 92.23371881 2.893081761 99 1934916 40.36 37351 SAMN40695677 SRR28523098 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 WalshL_xxxx__F1__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR207_71775__bin.31 96.69795784 0.543478261 126 2343719 46.83 30105 SAMN40695677 SRR28523098 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR207_71775__bin.16 97.23626869 1.912741546 292 2907592 46.56 13005 SAMN40695677 SRR28523098 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 MASTER_WP4_UNINA_1__CS007_71775__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR207_71775__bin.14 95.41446208 4.38957476 269 2844603 44.99 14346 SAMN40695677 SRR28523098 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_CSIC_2__P2504__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR207_71775__bin.21 97.453125 0.625 131 3131484 40.07 44426 SAMN40695677 SRR28523098 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 LeechJ_2020__ERS3967690__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR207_71775__bin.9 92.21311475 0.273224044 161 1464840 53.5 13749 SAMN40695677 SRR28523098 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 FontanaF_2023__SRR20746839__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR207_71775__bin.18 99.02597403 0 163 1741986 36.36 17246 SAMN40695677 SRR28523098 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR207_71775__bin.8 91.4375 0 21 1316954 43.82 119795 SAMN40695677 SRR28523098 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR207_71775__bin.15 90.35326087 1.539855072 192 2534985 43.11 19207 SAMN40695677 SRR28523098 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 MASTER_WP4_UNINA_1__PR207_71775__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PR207_71775__bin.6 70.59864887 2.244877257 350 1660032 38.96 5756 SAMN40695677 SRR28523098 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.11 DeFilippisF_xxxx__DF_28__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A carnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PS007_71775__bin.1 96.78233952 1.073232323 130 2072873 35.04 27994 SAMN40695648 SRR28523173 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PS007_71775__bin.5 55.64321069 1.574703956 417 1117344 37.07 2783 SAMN40695648 SRR28523173 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MAG_417 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PS007_71775__bin.6 60.91954023 0 344 1823751 35.44 6970 SAMN40695648 SRR28523173 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PS007_71775__bin.7 94.44444444 0.555555556 94 2902534 32.75 158048 SAMN40695648 SRR28523173 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PS007_71775__bin.11 85.8125 0.15625 50 1405679 39.78 48080 SAMN40695648 SRR28523173 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 LeechJ_2020__ERS3967690__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PS007_71775__bin.2 56.53172188 0 471 1229664 36.79 2668 SAMN40695648 SRR28523173 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_385__bin.9 MASTER_WP4_UNINA_1__PS007_71775__bin.2 Bacteroidota;Bacteroidia;Flavobacteriales;Weeksellaceae;Kaistella Kaistella haifensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PS007_71775__bin.9 99.4 0.1 198 11832808 36.28 141558 SAMN40695648 SRR28523173 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PT008_71775__bin.9 98.64130435 0 94 1736342 42.05 33822 SAMN40695669 SRR28523107 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PT008_71775__bin.6 98.59481916 0.946969697 135 2274040 34.95 33990 SAMN40695669 SRR28523107 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PT008_71775__bin.11 58.25812712 0.718704512 94 918973 39.78 13681 SAMN40695669 SRR28523107 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PT008_71775__bin.2 99.38858696 0 34 2809875 46.74 163954 SAMN40695669 SRR28523107 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 MASTER_WP4_UNINA_1__PT008_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PT008_71775__bin.3 99.38271605 0.308641975 26 1729963 37.05 121906 SAMN40695669 SRR28523107 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KharnaiorP_2023__SRR22859379__bin.8 MASTER_WP4_UNINA_1__PT008_71775__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PT008_71775__bin.7 83.21557172 3.772290809 492 2506828 43.92 6135 SAMN40695669 SRR28523107 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FranciosaI_2021__SRR12227952__bin.4 WalshAM_2020__ERS3466758__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraplantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PT008_71775__bin.4 98.04526749 0.056116723 105 1921865 38.55 30758 SAMN40695669 SRR28523107 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967740__bin.10 LeechJ_2020__ERS3967740__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus parvulus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PT008_71775__bin.8 67.24137931 2.586206897 42 1314166 37.09 58839 SAMN40695669 SRR28523107 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967712__bin.13 LeechJ_2020__ERS3967712__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PT014_71775__bin.2 90.43310463 0.503144654 122 1932640 34.96 24309 SAMN40695670 SRR28523106 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PT014_71775__bin.4 87.85973085 0.384963768 118 2001542 46.87 29794 SAMN40695670 SRR28523106 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PT014_71775__bin.3 86.72241281 0.503144654 192 1799077 35.53 12301 SAMN40695670 SRR28523106 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU007_71775__bin.10 99.72691586 0 38 1698370 37.76 84328 SAMN40695722 SRR28523283 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU007_71775__bin.7 78.40466114 0.543478261 284 1783183 46.96 7368 SAMN40695722 SRR28523283 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU007_71775__bin.4 66.66666667 1.724137931 590 3104648 34.29 6946 SAMN40695722 SRR28523283 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_UNINA_1__PU007_71775__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU007_71775__bin.12 58.21410757 2.160493827 315 1611079 44.98 5398 SAMN40695722 SRR28523283 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__PU007_71775__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU007_71775__bin.24 78.87596899 1.162790698 412 2322692 63.48 7158 SAMN40695722 SRR28523283 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU007_71775__bin.49 93.3030303 1.060606061 50 1738375 64.02 67890 SAMN40695722 SRR28523283 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_296__bin.3 CM_UNINA_FFOOD__FFOOD_296__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU007_71775__bin.52 98.75 0.3515625 38 2330366 42.55 107646 SAMN40695722 SRR28523283 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU007_71775__bin.50 58.6622807 0.712719298 193 1060018 67.17 7633 SAMN40695722 SRR28523283 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU007_71775__bin.11 93.88264669 4.56928839 152 2608811 37.57 27377 SAMN40695722 SRR28523283 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2235_73323__bin.9 MASTER_WP4_UNINA_1__PU007_71775__bin.11 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU007_71775__bin.28 93.72916667 0.3125 103 1987032 43.94 36095 SAMN40695722 SRR28523283 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU007_71775__bin.21 85.4288499 2.046783626 615 3584213 70.47 7975 SAMN40695722 SRR28523283 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__771_Tarentaise__bin.3 MASTER_WP4_UNINA_1__FO005_71775__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium tyrofermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU007_71775__bin.54 77.22350815 0.140200708 177 1148426 51.33 7824 SAMN40695722 SRR28523283 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_1__PU007_71775__bin.54 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU007_71775__bin.26 58.05992588 0.734214391 218 1597459 55.58 8268 SAMN40695722 SRR28523283 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU007_71775__bin.37 83.33333333 1.364522417 166 1640471 55.06 14894 SAMN40695722 SRR28523283 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU007_71775__bin.16 93.42873176 0.925925926 261 1864282 66.1 10062 SAMN40695722 SRR28523283 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU007_71775__bin.20 84.29238506 0.517241379 186 2534533 55.48 26833 SAMN40695722 SRR28523283 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU007_71775__bin.23 86.25841751 1.655443322 397 2120914 68.94 7313 SAMN40695722 SRR28523283 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 160 160 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU007_71775__bin.31 90.16225563 3.740567265 242 2009531 36.57 11955 SAMN40695722 SRR28523283 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Ruoffia Ruoffia tabacinasalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU007_71775__bin.55 87.42455957 0.845308538 255 2608755 42.09 13824 SAMN40695722 SRR28523283 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 181 MASTER_WP4_UNINA_1__PU007_71775__bin.55 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU007_71775__bin.46 89.64176496 0.344036697 138 2939340 56.4 36641 SAMN40695722 SRR28523283 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_114__bin.22 MASTER_WP4_UNINA_1__FO005_71775__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU007_71775__bin.9 97.86821705 2.325581395 270 3333317 68.82 21801 SAMN40695722 SRR28523283 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU007_71775__bin.3 97.29166667 0.277777778 72 2653693 59.67 76439 SAMN40695722 SRR28523283 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU007_71775__bin.29 87.90262172 1.685393258 436 1830204 27.18 5134 SAMN40695722 SRR28523283 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__FO007_71775__bin.32 MASTER_WP4_UNINA_1__PU007_71775__bin.29 Fusobacteriota;Fusobacteriia;Fusobacteriales;Fusobacteriaceae;Fusobacterium_B Fusobacterium B sp041668805 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU007_71775__bin.15 92.12707182 3.406998158 152 2169257 34.57 23892 SAMN40695722 SRR28523283 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__PU007_71775__bin.15 MASTER_WP4_UNINA_1__PU007_71775__bin.15 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU007_71775__bin.19 85.62691131 2.652905199 263 3519754 65.32 25873 SAMN40695722 SRR28523283 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;CmP2 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU007_71775__bin.44 95.32163743 0 55 2612411 60.95 73902 SAMN40695722 SRR28523283 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__PU007_71775__bin.44 MASTER_WP4_UNINA_1__PU007_71775__bin.44 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU010_71775__bin.11 63.33386626 0.978535354 478 1359881 35.03 2996 SAMN40695723 SRR28523282 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_1__PU010_71775__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU010_71775__bin.45 55.96518177 0.529100529 42 1065864 37.89 37555 SAMN40695723 SRR28523282 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU010_71775__bin.2 79.33646813 3.448275862 700 3681465 34.72 7721 SAMN40695723 SRR28523282 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_UNINA_1__PU010_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU010_71775__bin.25 82.5967829 3.704710145 452 2505894 46.65 6949 SAMN40695723 SRR28523282 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 MASTER_WP4_UNINA_1__PU010_71775__bin.25 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU010_71775__bin.12 93.50775194 4.215116279 457 3323804 63.22 10891 SAMN40695723 SRR28523282 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU010_71775__bin.31 96.63636364 1.515151515 106 1747949 64.35 29152 SAMN40695723 SRR28523282 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_296__bin.3 CM_UNINA_FFOOD__FFOOD_296__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU010_71775__bin.42 97.4609375 0.3125 31 2283019 42.55 107646 SAMN40695723 SRR28523282 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU010_71775__bin.5 83.92273994 2.354497354 394 1320962 39.24 3798 SAMN40695723 SRR28523282 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MASTER_WP4_UNINA_1__PU010_71775__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU010_71775__bin.23 76.47895523 2.137870855 442 1953750 54.34 5082 SAMN40695723 SRR28523282 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic MASTER_WP4_UNINA_1__PU010_71775__bin.23 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU010_71775__bin.3 89.25438596 1.864035088 380 2007178 67.7 6766 SAMN40695723 SRR28523282 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU010_71775__bin.13 98.625 2.3828125 126 2342625 43.92 36401 SAMN40695723 SRR28523282 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU010_71775__bin.29 80.24296537 4.825757576 445 1773763 58.19 4473 SAMN40695723 SRR28523282 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_290__bin.1 MASTER_WP4_UNINA_1__PU010_71775__bin.29 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia crudilactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU010_71775__bin.37 97.5308642 0.264550265 74 1810622 36.96 66076 SAMN40695723 SRR28523282 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KharnaiorP_2023__SRR22859379__bin.8 MASTER_WP4_UNINA_1__PU010_71775__bin.37 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU010_71775__bin.7 92.33480176 0.660792952 251 2534160 55.68 14972 SAMN40695723 SRR28523282 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU010_71775__bin.20 96.00389864 0.438596491 101 2059398 55.34 42065 SAMN40695723 SRR28523282 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU010_71775__bin.22 97.97979798 2.42003367 133 2231473 65.88 31611 SAMN40695723 SRR28523282 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU010_71775__bin.35 54.47401481 0.377747253 424 1321280 44.11 3261 SAMN40695723 SRR28523282 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy5_bin.lin.34 MASTER_WP4_UNINA_1__PU010_71775__bin.35 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU010_71775__bin.4 84.15759717 3.764749504 690 2944929 53.6 4793 SAMN40695723 SRR28523282 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.20 MASTER_WP4_UNINA_1__PU010_71775__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU010_71775__bin.33 97.48563218 1.903735632 222 3421225 55.35 26613 SAMN40695723 SRR28523282 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PU010_71775__bin.30 58.33068783 0 582 1887910 44.03 3505 SAMN40695723 SRR28523282 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2G__bin.45 MASTER_WP4_UNINA_1__PU010_71775__bin.30 Bacteroidota;Bacteroidia;Sphingobacteriales;Sphingobacteriaceae;Sphingobacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PV005_71775__bin.1 64.10116448 0.194080543 39 1055139 39.43 44519 SAMN40695708 SRR28523064 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PV005_71775__bin.10 93.76743727 3.03442029 354 2475248 46.81 9975 SAMN40695708 SRR28523064 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_UNINA_1__PV005_71775__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PV005_71775__bin.8 76.29044086 1.366120219 269 1124990 53.81 4734 SAMN40695708 SRR28523064 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 MASTER_WP4_UNINA_1__PV005_71775__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PV005_71775__bin.11 50.16233766 0 124 773340 36.89 8121 SAMN40695708 SRR28523064 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PV005_71775__bin.12 98.9375 0.78125 37 2427944 43.65 121628 SAMN40695708 SRR28523064 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 LandisEA_2021__SRS5653155__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__PV005_71775__bin.9 91.83222958 0.883002208 431 2263210 71.9 6767 SAMN40695708 SRR28523064 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_286__bin.4 MASTER_WP4_UNINA_1__PV005_71775__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia kristinae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA003_71775__bin.13 93.29710145 0.203804348 153 1581418 42.26 14532 SAMN40695638 SRR28523184 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA003_71775__bin.7 90.41126367 0.42184265 281 2149006 46.95 9856 SAMN40695638 SRR28523184 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA003_71775__bin.3 97.86821705 3.391472868 424 3810244 63.31 13645 SAMN40695638 SRR28523184 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 KastmanEK_2016__CSB907__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA003_71775__bin.2 89.8245614 1.656920078 709 3858234 70.43 7143 SAMN40695638 SRR28523184 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__771_Tarentaise__bin.3 MASTER_WP4_UNINA_1__TA003_71775__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium tyrofermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA003_71775__bin.1 96.875 1.131687243 111 1927828 38.58 35224 SAMN40695638 SRR28523184 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967740__bin.10 LeechJ_2020__ERS3967740__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus parvulus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA003_71775__bin.20 86.81498829 2.823315118 368 1930135 34.52 7162 SAMN40695638 SRR28523184 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.17 DeFilippisF_xxxx__DF_100__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Marinilactibacillus Marinilactibacillus psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA003_71775__bin.15 90.81203582 0.152905199 182 3124817 59.5 31944 SAMN40695638 SRR28523184 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_323 BertuzziAS_2018__ERS2032111__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA003_71775__bin.9 76.0249589 1.03021978 292 2068971 42.07 8638 SAMN40695638 SRR28523184 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 181 MAG_643 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA003_71775__bin.8 75.9860565 0.791830494 280 2043725 56.02 10062 SAMN40695638 SRR28523184 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_114__bin.22 MASTER_WP4_UNINA_1__FO005_71775__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA003_71775__bin.16 64.82758621 1.724137931 658 2399238 40.31 4023 SAMN40695638 SRR28523184 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MacoriG_2019__CS_R33__bin.1 MASTER_WP4_UNINA_1__TA003_71775__bin.16 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio hibernica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA003_71775__bin.6 98 0.1 348 11891081 36.27 76803 SAMN40695638 SRR28523184 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA011_71775__bin.33 82.98449612 1.308139535 466 2685389 63.42 7265 SAMN40695637 SRR28523185 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 CM_UNINA_FFOOD__FFOOD_320__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA011_71775__bin.32 83.33333333 1.754385965 598 3221987 70.44 7100 SAMN40695637 SRR28523185 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__771_Tarentaise__bin.3 MASTER_WP4_UNINA_1__TA011_71775__bin.32 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium tyrofermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA011_71775__bin.34 77.5974026 0 58 1232312 50.7 28366 SAMN40695637 SRR28523185 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA011_71775__bin.4 89.3336172 2.550091075 270 2188808 34.62 11708 SAMN40695637 SRR28523185 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.17 DeFilippisF_xxxx__DF_100__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Marinilactibacillus Marinilactibacillus psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA011_71775__bin.5 73.72699645 0.343406593 263 2092677 42.05 10392 SAMN40695637 SRR28523185 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 181 MAG_643 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA011_71775__bin.17 63.47477064 1.29969419 180 1897212 55.71 14059 SAMN40695637 SRR28523185 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_114__bin.22 MASTER_WP4_UNINA_1__FO005_71775__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA011_71775__bin.25 98.16223067 1.977186312 200 2995808 36.11 26037 SAMN40695637 SRR28523185 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We4_bin.full.28 We4_bin.full.28 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;Mesonia Mesonia profundi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA011_71775__bin.24 98.34254144 0.552486188 52 2649702 36.24 82136 SAMN40695637 SRR28523185 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001703515.1_ASM170351v1_genomic GCF_001703515.1_ASM170351v1_genomic Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA011_71775__bin.13 97.23756906 1.260916058 167 2428113 32.62 27275 SAMN40695637 SRR28523185 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811284__bin.4 FalardeauJ_2023__SRR20811284__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Mammaliicoccus Mammaliicoccus vitulinus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA011_71775__bin.2 81.47186335 1.351351351 349 2792407 39.89 11869 SAMN40695637 SRR28523185 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_632 DeFilippisF_xxxx__DF_100__bin.18 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA011_71775__bin.10 80.16197327 2.777777778 131 2276745 66.98 31804 SAMN40695637 SRR28523185 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__TA011_71775__bin.10 MASTER_WP4_UNINA_1__TA011_71775__bin.10 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA011_71775__bin.29 97.4175921 3.005464481 132 2304736 36.96 26678 SAMN40695637 SRR28523185 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__TA011_71775__bin.29 MASTER_WP4_UNINA_1__TA011_71775__bin.29 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Carnobacterium_A Carnobacterium A mobile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA011_71775__bin.26 71.9 2.4 1903 10162425 35.97 6536 SAMN40695637 SRR28523185 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA011_71775__bin.28 89.5 4.2 1053 13291927 38.8 17900 SAMN40695637 SRR28523185 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCA_003243815.1_ASM324381v1_genomic GCA_003243815.1_ASM324381v1_genomic Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Spathaspora Candida sake cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA012_71775__bin.34 87.24806202 1.453488372 438 3020011 63.21 10360 SAMN40695639 SRR28523183 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 CM_UNINA_FFOOD__FFOOD_320__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA012_71775__bin.24 94.68810916 4.385964912 666 4272918 70.23 9243 SAMN40695639 SRR28523183 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__771_Tarentaise__bin.3 MASTER_WP4_UNINA_1__TA011_71775__bin.32 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium tyrofermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA012_71775__bin.2 96.42857143 0 56 1462363 50.89 40061 SAMN40695639 SRR28523183 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA012_71775__bin.18 71.89270393 2.717313218 504 2246799 52.89 4771 SAMN40695639 SRR28523183 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-29__bin.9 MASTER_WP4_UNINA_1__TA012_71775__bin.18 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella sp030440445 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA012_71775__bin.8 56.89655172 3.448275862 223 1919337 55.99 11365 SAMN40695639 SRR28523183 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_114__bin.22 MASTER_WP4_UNINA_1__FO005_71775__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA012_71775__bin.36 90.1442603 1.087589491 499 2520208 36.27 6186 SAMN40695639 SRR28523183 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We4_bin.full.28 We4_bin.full.28 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;Mesonia Mesonia profundi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA012_71775__bin.17 89.72040192 4.109327217 513 3932161 64.02 11951 SAMN40695639 SRR28523183 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.1 DeFilippisF_xxxx__DF_100__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Specibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA012_71775__bin.5 99.30939227 0.552486188 34 2989050 37.44 126018 SAMN40695639 SRR28523183 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__TA012_71775__bin.5 MASTER_WP4_UNINA_1__TA012_71775__bin.5 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus_D Vagococcus D salmoninarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TA012_71775__bin.15 82.14936248 2.094717668 226 1500488 34.92 9118 SAMN40695639 SRR28523183 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__TA012_71775__bin.15 MASTER_WP4_UNINA_1__TA012_71775__bin.15 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Carnobacterium_A NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TO013_71775__bin.14 67.78181978 1.902173913 361 1327985 41.74 4124 SAMN40695731 SRR28523273 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_UNINA_1__TO013_71775__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TO013_71775__bin.3 98.79245283 0.377358491 140 2247886 34.99 27254 SAMN40695731 SRR28523273 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TO013_71775__bin.18 96.51740136 1.710758377 280 1627994 37.78 7408 SAMN40695731 SRR28523273 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TO013_71775__bin.19 91.24897985 1.483416511 173 1531790 39.35 13064 SAMN40695731 SRR28523273 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TO013_71775__bin.21 56.03448276 3.448275862 225 1441035 35.11 9046 SAMN40695731 SRR28523273 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MAG_424 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TO013_71775__bin.12 73.95064445 4.518985416 609 2830544 45.91 5265 SAMN40695731 SRR28523273 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 MASTER_WP4_UNINA_1__TO013_71775__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TO013_71775__bin.16 91.30190797 4.218106996 404 2408353 45.07 7396 SAMN40695731 SRR28523273 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__TO013_71775__bin.16 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TO013_71775__bin.17 94.37369792 1.09375 221 3317674 39.99 24318 SAMN40695731 SRR28523273 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 LandisEA_2021__SRS5653155__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TO013_71775__bin.15 97.97178131 1.075268817 111 1744720 39.2 26444 SAMN40695731 SRR28523273 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TO013_71775__bin.9 97.6875 1.391369048 294 2314687 43.76 10419 SAMN40695731 SRR28523273 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TO013_71775__bin.4 72.44505061 1.3136289 614 1670748 30.12 2803 SAMN40695731 SRR28523273 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_104__bin.11 MASTER_WP4_UNINA_1__TO013_71775__bin.4 Bacillota;Clostridia;Clostridiales;Clostridiaceae;Clostridium_B Clostridium B tyrobutyricum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_1__TO013_71775__bin.2 58 0 2529 8972112 35.73 4023 SAMN40695731 SRR28523273 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__TO013_71775__bin.2 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__A-28.0__bin.2 62.31302419 0 63 991558 39.92 21642 SAMN36690460 SRR25394798 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__B-28.0__bin.5 60.34482759 0 41 645805 51.06 25678 SAMN36690462 SRR25394796 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__C-27.0__bin.1 50.27309905 0 65 765236 40.16 15445 SAMN36690463 SRR25394793 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__C-27.0__bin.6 50 0 31 624796 51.1 26019 SAMN36690463 SRR25394793 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__C-27.0__bin.3 52.5862069 0 65 605323 36.55 11151 SAMN36690463 SRR25394793 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__D-27.0__bin.4 50.86206897 0 58 581835 36.21 11306 SAMN36690465 SRR25395113 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__F-27.0__bin.3 50 0 31 517802 51.16 28367 SAMN36690473 SRR25395104 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__F-28.0__bin.3 57.34109656 0 73 864953 40.04 19408 SAMN36690474 SRR25395103 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__F-28.0__bin.1 65.08658009 0 65 984386 51.15 20671 SAMN36690474 SRR25395103 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-23__bin.4 74.62121212 0.189393939 35 1561416 35.18 68049 SAMN36690161 SRR25394879 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-23__bin.3 58.62068966 0 112 978254 39.89 10413 SAMN36690161 SRR25394879 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-23__bin.1 76.3061651 0 152 1818956 35.43 18603 SAMN36690161 SRR25394879 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-24__bin.2 95.45454545 0.568181818 60 2195963 34.85 66282 SAMN36690162 SRR25394878 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-24__bin.3 69.86414362 0.145560408 121 1052667 39.89 10243 SAMN36690162 SRR25394878 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-24__bin.1 86.32101556 0.974842767 189 1968458 35.37 16358 SAMN36690162 SRR25394878 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-25__bin.4 75.75757576 0.568181818 38 1544955 35.25 60885 SAMN36690163 SRR25395197 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-25__bin.5 63.79310345 0 84 780896 39.86 11194 SAMN36690163 SRR25395197 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-25__bin.3 65.28735632 0 143 1627398 35.01 18282 SAMN36690163 SRR25395197 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-26__bin.1 98.10606061 0.378787879 47 2183820 34.99 66284 SAMN36690164 SRR25395196 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-26__bin.2 69.08643516 0.291120815 124 1021562 39.49 9748 SAMN36690164 SRR25395196 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-26__bin.3 85.69918558 1.144248326 173 1904270 35.35 16842 SAMN36690164 SRR25395196 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-27__bin.2 73.86363636 0.378787879 30 1568054 35.14 66284 SAMN36690475 SRR25395102 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-27__bin.3 51.57993692 0.145560408 92 765548 40.09 9917 SAMN36690475 SRR25395102 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-27__bin.5 89.70108696 0.295031056 132 2035687 46.8 24138 SAMN36690475 SRR25395102 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-27__bin.4 82.9414838 0 174 2000999 35.42 18601 SAMN36690475 SRR25395102 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-28__bin.4 80.3030303 0 30 1730663 35.1 69980 SAMN36690476 SRR25395101 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-28__bin.2 87.38095238 0.067934783 138 2063103 46.83 22124 SAMN36690476 SRR25395101 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-28__bin.1 79.02298851 1.724137931 148 1821706 35.48 18604 SAMN36690476 SRR25395101 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-29__bin.3 70.45454545 0 31 1512510 35.15 128084 SAMN36690477 SRR25395100 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-29__bin.18 68.85388508 0.363901019 123 1028990 39.75 10295 SAMN36690477 SRR25395100 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-29__bin.12 84.06478579 0 182 1909334 35.31 16254 SAMN36690477 SRR25395100 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-29__bin.16 81.5337763 1.569767442 519 2759284 63.43 7106 SAMN36690477 SRR25395100 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 KastmanEK_2016__CSB907__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-29__bin.14 94.63937622 4.434697856 780 4404701 70.39 7930 SAMN36690477 SRR25395100 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__771_Tarentaise__bin.3 MASTER_WP4_UNINA_2__H-29__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium tyrofermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-29__bin.17 95.71823204 2.854511971 335 2255003 36.43 8902 SAMN36690477 SRR25395100 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001703515.1_ASM170351v1_genomic GCF_001703515.1_ASM170351v1_genomic Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-29__bin.15 91.49847095 2.675840979 247 2998525 64.49 24731 SAMN36690477 SRR25395100 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259376__bin.8 CM_UNINA_FFOOD__FFOOD_329__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Arthrobacter_H Arthrobacter H rhombi A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-29__bin.1 97.7 0.1 345 11562056 36.28 63943 SAMN36690477 SRR25395100 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-30__bin.15 78.78787879 0 30 1648002 35.2 68062 SAMN36690478 SRR25395099 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-30__bin.2 56.89655172 0 87 778905 40.04 10027 SAMN36690478 SRR25395099 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-30__bin.7 81.89655172 0 159 1876082 35.36 18235 SAMN36690478 SRR25395099 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-30__bin.14 74.10244922 1.805555556 573 2322028 32.74 4602 SAMN36690478 SRR25395099 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_UNINA_2__H-30__bin.14 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-30__bin.5 71.61129568 1.744186047 425 2325398 63.44 7062 SAMN36690478 SRR25395099 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 KastmanEK_2016__CSB907__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-30__bin.3 90.15594542 4.288499025 733 3900269 70.49 7077 SAMN36690478 SRR25395099 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__771_Tarentaise__bin.3 MASTER_WP4_UNINA_2__H-30__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium tyrofermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-30__bin.13 85.28797146 0.955657492 337 2633693 64.65 10398 SAMN36690478 SRR25395099 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259376__bin.8 CM_UNINA_FFOOD__FFOOD_329__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Arthrobacter_H Arthrobacter H rhombi A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__H-30__bin.4 97.5 0.1 316 11621943 36.26 74752 SAMN36690478 SRR25395099 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-23__bin.3 50 0 20 497225 50.85 31382 SAMN36690165 SRR25395195 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_1__FO001_71775__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-23__bin.7 74.29467085 0 278 4401748 59.94 22926 SAMN36690165 SRR25395195 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q04-26__bin.13 AlvarezOrdonezA_xxxx__Q04-26__bin.13 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E haemolytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-23.1__bin.8 53.71179039 0.145560408 29 869454 39.86 46506 SAMN36690293 SRR25395397 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-23.1__bin.9 62.33766234 0 59 1049595 50.72 27389 SAMN36690293 SRR25395397 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_1__FO001_71775__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-24__bin.5 69.8890175 1.049240348 167 3501943 59.94 32760 SAMN36690166 SRR25395194 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q04-26__bin.13 AlvarezOrdonezA_xxxx__Q04-26__bin.13 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E haemolytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-24.1__bin.1 94.60533126 1.721014493 287 2462711 46.75 12626 SAMN36690294 SRR25395396 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-24.1__bin.3 58.7012987 0 26 641240 51.3 38178 SAMN36690294 SRR25395396 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_1__FO001_71775__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-25__bin.10 62.78494156 2.594261581 355 1758565 62.11 6011 SAMN36690167 SRR25395193 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic MASTER_WP4_UNINA_2__I-25__bin.10 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-25__bin.2 66.12554113 0 43 954690 50.38 37281 SAMN36690167 SRR25395193 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_1__FO001_71775__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-25__bin.6 89.87866449 2.470420582 876 5278319 60.19 8865 SAMN36690167 SRR25395193 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q04-26__bin.13 AlvarezOrdonezA_xxxx__Q04-26__bin.13 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E haemolytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-25.1__bin.10 89.9560801 2.016443701 522 2616309 46.31 6344 SAMN36690295 SRR25395395 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_UNINA_2__I-25.1__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-25.1__bin.5 95.60344828 3.0258092 518 2906778 61.47 7181 SAMN36690295 SRR25395395 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic MASTER_WP4_UNINA_2__I-25.1__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-26__bin.9 74.13793103 0 748 5542812 60.19 12490 SAMN36690168 SRR25395192 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q04-26__bin.13 AlvarezOrdonezA_xxxx__Q04-26__bin.13 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E haemolytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-26.1__bin.7 70.0517207 1.286231884 566 1906938 46.61 3866 SAMN36690296 SRR25395394 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_UNINA_2__I-26.1__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-26.1__bin.6 85.62807882 3.111829502 650 2573506 61.41 4546 SAMN36690296 SRR25395394 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic MASTER_WP4_UNINA_2__I-26.1__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-26.1__bin.9 61.03896104 0 35 806337 50.86 38178 SAMN36690296 SRR25395394 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_1__FO001_71775__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-27__bin.2 96.04553601 2.074314574 250 2400239 34.8 15896 SAMN36690479 SRR25395098 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__O-26.1__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-27__bin.4 92.11790393 0.636826783 128 1421802 39.42 16809 SAMN36690479 SRR25395098 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-27__bin.1 85.71428571 0 47 1321878 50.9 39466 SAMN36690479 SRR25395098 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__O-25.1__bin.29 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-28__bin.9 92.41852104 4.578804348 494 2436107 46.51 5938 SAMN36690480 SRR25395097 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_UNINA_2__I-28__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-28__bin.5 98.06640625 0.46875 57 2308490 42.61 85407 SAMN36690480 SRR25395097 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-28__bin.3 94.05631659 0.204701121 365 2587957 38.83 10114 SAMN36690480 SRR25395097 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MagliuloR_2024__SRR28235359__bin.3 MASTER_WP4_UNINA_2__M-26.1__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-28__bin.13 98.80078125 0.401785714 44 2287526 43.89 71913 SAMN36690480 SRR25395097 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 LandisEA_2021__SRS5653155__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-28__bin.2 83.31756544 1.832229581 341 1964046 56.45 7321 SAMN36690480 SRR25395097 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308537__bin.18 MASTER_WP4_UNINA_2__I-30__bin.19 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia endophytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-29__bin.13 95.4129256 4.898175301 245 2642413 34.41 18482 SAMN36690481 SRR25395096 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__I-29__bin.13 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-29__bin.9 97.2192029 2.079849498 279 2862087 46.31 14800 SAMN36690481 SRR25395096 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_357__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-29__bin.1 70.70490868 0 62 1925615 38.28 53901 SAMN36690481 SRR25395096 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MagliuloR_2024__SRR28235359__bin.3 MASTER_WP4_UNINA_2__M-26.1__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-29__bin.15 91.22971286 2.304262529 411 2585523 37.56 8351 SAMN36690481 SRR25395096 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2235_73323__bin.9 MAG_558 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-29__bin.2 97.0625 0.9375 92 2451889 43.6 45854 SAMN36690481 SRR25395096 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 LandisEA_2021__SRS5653155__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-29__bin.6 90.56603774 1.41509434 99 1995641 35.57 39865 SAMN36690481 SRR25395096 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_178 MAG_178 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-29__bin.22 98.88888889 1.111111111 102 2536334 33.02 44960 SAMN36690481 SRR25395096 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-29__bin.7 89.93377483 1.103752759 243 2122924 56.41 10780 SAMN36690481 SRR25395096 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308537__bin.18 MASTER_WP4_UNINA_2__I-30__bin.19 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia endophytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-29__bin.11 68.6 2.3 2860 11401953 36.02 4549 SAMN36690481 SRR25395096 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_2__I-29__bin.11 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-30__bin.16 95.60130992 3.168498168 451 2770885 46.43 8041 SAMN36690482 SRR25395095 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_UNINA_2__I-30__bin.16 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-30__bin.7 72.87927827 1.723484848 514 1841084 42.64 4104 SAMN36690482 SRR25395095 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-30__bin.8 96.77103718 0.399543379 173 2705717 38.65 28399 SAMN36690482 SRR25395095 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MagliuloR_2024__SRR28235359__bin.3 MASTER_WP4_UNINA_2__M-26.1__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-30__bin.14 98.3125 0.9375 118 2520961 43.46 36932 SAMN36690482 SRR25395095 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 LandisEA_2021__SRS5653155__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-30__bin.11 81.41509434 2.547169811 99 1704451 35.74 42373 SAMN36690482 SRR25395095 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_178 MAG_178 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-30__bin.2 93.33333333 1.111111111 54 2427655 33.09 90688 SAMN36690482 SRR25395095 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__I-30__bin.19 96.35761589 1.324503311 237 2227647 56.3 14625 SAMN36690482 SRR25395095 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308537__bin.18 MASTER_WP4_UNINA_2__I-30__bin.19 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia endophytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-23__bin.7 69.15584416 0 74 1099489 50.76 18698 SAMN36690169 SRR25395191 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__M-28__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-23.1__bin.4 68.12227074 0.145560408 34 1157769 39.38 44624 SAMN36690297 SRR25395393 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-23.1__bin.2 95.42400522 0.068493151 172 2744911 38.41 32048 SAMN36690297 SRR25395393 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MagliuloR_2024__SRR28235359__bin.3 MASTER_WP4_UNINA_2__M-26.1__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-23.1__bin.13 60.34482759 0 106 1076930 46.92 17210 SAMN36690297 SRR25395393 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 AlvarezOrdonezA_xxxx__Q02-30__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-23.1__bin.11 98.4375 0.694444444 147 2235925 44.45 27766 SAMN36690297 SRR25395393 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-23.1__bin.6 87.17228464 0 55 1395962 43.88 45119 SAMN36690297 SRR25395393 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-23.1__bin.9 60.34482759 0 95 828969 36.75 12785 SAMN36690297 SRR25395393 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-24.1__bin.14 54.14847162 0 28 960337 39.23 44720 SAMN36690298 SRR25395392 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-24.1__bin.6 56.47562582 0.028604119 119 1441741 46.89 17814 SAMN36690298 SRR25395392 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-24.1__bin.9 96.94087615 1.177536232 124 2884579 46.66 42268 SAMN36690298 SRR25395392 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_337__bin.6 DeFilippisF_xxxx__DF_96__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-24.1__bin.11 63.27586207 1.724137931 453 2555102 38.46 7470 SAMN36690298 SRR25395392 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MagliuloR_2024__SRR28235359__bin.3 MASTER_WP4_UNINA_2__M-26.1__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-24.1__bin.10 50 0 48 726537 46.7 27229 SAMN36690298 SRR25395392 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 AlvarezOrdonezA_xxxx__Q02-30__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-24.1__bin.4 72.4137931 0 74 956387 50.86 15257 SAMN36690298 SRR25395392 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__M-28__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-24.1__bin.8 99.0625 0 130 2271802 44.53 26151 SAMN36690298 SRR25395392 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-24.1__bin.7 94.94382022 0 52 1474106 43.74 58273 SAMN36690298 SRR25395392 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-25.1__bin.1 88.68428837 3.85916723 405 2612406 61.53 8330 SAMN36690299 SRR25395391 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic MASTER_WP4_UNINA_2__O-29__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-25.1__bin.10 58.62068966 0 33 495103 51.13 19521 SAMN36690299 SRR25395391 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__M-28__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-26__bin.5 89.47678209 1.332362756 568 2729180 61.43 5960 SAMN36690172 SRR25395188 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic MASTER_WP4_UNINA_2__M-26__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-26.1__bin.10 60.69868996 0.145560408 28 984488 39.58 63137 SAMN36690300 SRR25395390 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-26.1__bin.5 98.53881279 0.091324201 174 2904015 38.53 34030 SAMN36690300 SRR25395390 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MagliuloR_2024__SRR28235359__bin.3 MASTER_WP4_UNINA_2__M-26.1__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-26.1__bin.6 95.16142664 2.593602096 336 3096597 61.4 15002 SAMN36690300 SRR25395390 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic MASTER_WP4_UNINA_2__O-29__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-26.1__bin.8 55.17241379 0 47 638138 50.68 15344 SAMN36690300 SRR25395390 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__M-28__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-26.1__bin.4 56.89655172 0 98 823036 36.16 11819 SAMN36690300 SRR25395390 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-27__bin.14 88.51980368 2.334205934 392 2448348 53.9 7710 SAMN36690483 SRR25395093 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic MASTER_WP4_UNINA_2__M-27__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-27__bin.15 56.34796238 0 474 1813449 43.94 4329 SAMN36690483 SRR25395093 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_2__M-27__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-27__bin.20 95.8125 1.25 84 2583146 46.01 53947 SAMN36690483 SRR25395093 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_96__bin.15 DeFilippisF_xxxx__DF_96__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parafarraginis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-27__bin.2 80.84588033 3.018867925 382 1521146 39.32 4585 SAMN36690483 SRR25395093 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.11 MASTER_WP4_UNINA_2__M-27__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A carnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-27__bin.3 79.54545455 0 93 1280635 50.56 18193 SAMN36690483 SRR25395093 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__M-28__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-27__bin.17 70.3125 0.572916667 60 705785 44.19 19829 SAMN36690483 SRR25395093 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-27__bin.4 56.89655172 0 928 3271739 60.64 3933 SAMN36690483 SRR25395093 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__AS107_71775__bin.1 MASTER_WP4_UNINA_2__M-27__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E paracarnis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-27__bin.9 93.57945425 0.280898876 95 1331573 44 24272 SAMN36690483 SRR25395093 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-27__bin.1 83.88264669 3.18937838 614 2511394 38.2 4860 SAMN36690483 SRR25395093 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746834__bin.2 MASTER_WP4_UNINA_2__M-27__bin.1 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B durans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-28__bin.9 83.82732002 3.064534071 421 1893166 46.89 5346 SAMN36690484 SRR25395092 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-28__bin.4 96.5546875 1.979166667 140 2391971 43.82 28873 SAMN36690484 SRR25395092 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-28__bin.13 95.8125 1.25 90 2567756 45.96 48479 SAMN36690484 SRR25395092 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_96__bin.15 DeFilippisF_xxxx__DF_96__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parafarraginis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-28__bin.8 98.37662338 0 122 1638036 50.4 16902 SAMN36690484 SRR25395092 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__M-28__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-28__bin.3 71.48871528 0.78125 75 737453 44.02 18044 SAMN36690484 SRR25395092 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-28__bin.18 98.45505618 0.561797753 91 1568545 43.68 35571 SAMN36690484 SRR25395092 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-28__bin.7 55.17241379 0 119 814970 36.08 9715 SAMN36690484 SRR25395092 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-28__bin.16 50.47021944 3.448275862 576 1893900 34.87 3588 SAMN36690484 SRR25395092 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__PB007_73417__bin.10 MASTER_WP4_UNINA_2__M-28__bin.16 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus agalactiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-29__bin.14 94.83695652 2.27006689 231 2377740 46.84 15140 SAMN36690485 SRR25395091 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-29__bin.9 97.32291667 1.7578125 195 2459756 43.69 22240 SAMN36690485 SRR25395091 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-29__bin.13 56.56649832 0.555555556 596 1771378 33.16 3066 SAMN36690485 SRR25395091 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_UNINA_2__M-29__bin.13 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-29__bin.19 68.41240191 3.378995434 661 1786209 42.31 2818 SAMN36690485 SRR25395091 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-26__bin.7 MASTER_WP4_UNINA_2__M-29__bin.19 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter johnsonii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-29__bin.12 52.26305707 1.724137931 307 1386013 62.03 5092 SAMN36690485 SRR25395091 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic MASTER_WP4_UNINA_2__O-29__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-29__bin.23 84.2634779 2.433052819 997 3560927 66.93 4151 SAMN36690485 SRR25395091 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__M-29__bin.23 MASTER_WP4_UNINA_2__M-29__bin.23 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Xanthomonadaceae;Stenotrophomonas Stenotrophomonas geniculata cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-29__bin.8 94.06194749 1.713172448 427 2978431 52.86 9884 SAMN36690485 SRR25395091 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__M-29__bin.8 MASTER_WP4_UNINA_2__M-29__bin.8 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Limnobacter Limnobacter sp002954425 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-30__bin.7 86.59528353 1.619644723 501 2534975 61.47 6525 SAMN36690486 SRR25395090 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic MASTER_WP4_UNINA_2__O-29__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-30__bin.10 62.24137931 0 973 3658166 60.67 4368 SAMN36690486 SRR25395090 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__AS107_71775__bin.1 MASTER_WP4_UNINA_2__M-30__bin.10 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E paracarnis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__M-30__bin.14 97.22222222 0.694444444 140 2521267 33 35682 SAMN36690486 SRR25395090 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__N-28.0__bin.7 68.96551724 0 138 1112582 53.39 11353 SAMN36690488 SRR25395088 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 DeFilippisF_xxxx__DF_7__bin.24 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-23__bin.4 96.38257576 0.580400782 85 2360261 34.9 68130 SAMN36690173 SRR25395186 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__O-26.1__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-23__bin.2 69.4996361 0.145560408 102 1075779 39.77 13729 SAMN36690173 SRR25395186 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-23__bin.5 69.48051948 0 28 1010064 50.28 41629 SAMN36690173 SRR25395186 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__O-25.1__bin.29 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-23.1__bin.12 96.36363636 0.378787879 110 2092708 35.12 35271 SAMN36690301 SRR25395389 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__O-23.1__bin.12 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-23.1__bin.3 58.87736536 0.218340611 77 920737 39.5 15710 SAMN36690301 SRR25395389 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-23.1__bin.7 84.91471001 2.649006623 273 1406832 40 6180 SAMN36690301 SRR25395389 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001885995.1_ASM188599v1_genomic GCF_001885995.1_ASM188599v1_genomic Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_G Enterococcus G italicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-23.1__bin.8 88.63636364 0.297619048 111 1375036 51.24 17366 SAMN36690301 SRR25395389 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__O-25.1__bin.29 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-23.1__bin.11 80.62169312 0.037202381 22 3863026 50.67 320822 SAMN36690301 SRR25395389 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967688__bin.2 MASTER_WP4_UNINA_2__O-23.1__bin.11 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-23.1__bin.9 96.62921348 0 24 1593404 43.51 80083 SAMN36690301 SRR25395389 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-23.1__bin.4 98.87640449 1.061173533 114 2510263 38.13 32334 SAMN36690301 SRR25395389 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS12-29__bin.6 MASTER_WP4_TEAGASC_1__TGS12-29__bin.6 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B faecium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-24__bin.2 91.43939394 0.568181818 49 2126360 34.87 91913 SAMN36690174 SRR25395185 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__O-26.1__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-24__bin.3 91.75400291 0.291120815 145 1505192 39.27 14993 SAMN36690174 SRR25395185 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-24__bin.5 79.87012987 0 32 1183978 50.54 51741 SAMN36690174 SRR25395185 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__O-25.1__bin.29 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-24.1__bin.4 95.34090909 0.580400782 59 2228509 34.9 61232 SAMN36690302 SRR25395388 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__O-26.1__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-24.1__bin.5 69.15584416 0 42 1061481 50.72 37934 SAMN36690302 SRR25395388 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__O-25.1__bin.29 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-25__bin.5 87.8125 0.568181818 65 2022997 34.86 63483 SAMN36690175 SRR25395184 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__O-26.1__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-25__bin.2 93.42345873 2.510775862 280 2821151 61.45 21383 SAMN36690175 SRR25395184 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic MASTER_WP4_UNINA_2__O-29__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-25__bin.1 57.79220779 0.930735931 47 883940 50.79 25636 SAMN36690175 SRR25395184 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__O-25.1__bin.29 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-25.1__bin.30 86.81245054 2.446051423 395 1848491 35.01 5675 SAMN36690303 SRR25395386 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__O-25.1__bin.30 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-25.1__bin.15 85.31746032 0 29 1368291 37.95 101216 SAMN36690303 SRR25395386 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-25.1__bin.8 92.97671033 0.613693075 172 1525615 39.22 13931 SAMN36690303 SRR25395386 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-25.1__bin.31 52.89968652 1.724137931 716 2914232 35.45 4925 SAMN36690303 SRR25395386 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_UNINA_2__O-25.1__bin.31 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-25.1__bin.20 64.09090909 1.724137931 96 4964208 55.76 78724 SAMN36690303 SRR25395386 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS08-29__bin.64 EBC_145.4 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Serratia Serratia liquefaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-25.1__bin.1 81.89655172 4.310344828 528 4190722 53.03 11317 SAMN36690303 SRR25395386 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2596__bin.6 MASTER_WP4_UNINA_2__O-25.1__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Kluyvera Kluyvera intermedia cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-25.1__bin.34 90.57144723 1.149425287 280 2719270 61.41 19309 SAMN36690303 SRR25395386 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic MASTER_WP4_UNINA_2__O-29__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-25.1__bin.32 80.13245033 0.993377483 226 1686867 39.78 11287 SAMN36690303 SRR25395386 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001885995.1_ASM188599v1_genomic GCF_001885995.1_ASM188599v1_genomic Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_G Enterococcus G italicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-25.1__bin.29 98.37662338 0 96 1779962 50.31 25605 SAMN36690303 SRR25395386 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__O-25.1__bin.29 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-25.1__bin.13 97.2392638 0.613496933 99 1856516 36.89 32952 SAMN36690303 SRR25395386 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_012396435.1_ASM1239643v1_genomic GCF_012396435.1_ASM1239643v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella hellenica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-25.1__bin.9 93.92747925 0 95 3233584 59.64 60670 SAMN36690303 SRR25395386 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_323 MAG_323 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-25.1__bin.11 63.79310345 0 40 1559011 37.15 65507 SAMN36690303 SRR25395386 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308520__bin.4 YouL_2022__SRR13308524__bin.34 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-25.1__bin.26 71.70846395 1.724137931 771 2278439 41.78 3058 SAMN36690303 SRR25395386 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-26__bin.7 MASTER_WP4_UNINA_2__O-25.1__bin.26 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter johnsonii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-25.1__bin.21 73.85964912 3.399122807 689 2248423 70.24 3586 SAMN36690303 SRR25395386 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB16-22__bin.7 MASTER_WP4_UNINA_2__O-25.1__bin.21 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Kocuria Kocuria salsicia cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-25.1__bin.7 80.609319 1.111111111 15 2085147 32.94 381616 SAMN36690303 SRR25395386 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0167-001_Staphylococcus_succinus_BC15 MASTER_WP4_UNINA_1__SR008_71775__bin.14 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus succinus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-25.1__bin.19 92.76320583 3.187557275 110 4449479 50.91 61794 SAMN36690303 SRR25395386 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__O-25.1__bin.19 MASTER_WP4_UNINA_2__O-25.1__bin.19 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Dryocola NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-25.1__bin.33 97.17479675 1.638921151 78 5668924 61.39 123709 SAMN36690303 SRR25395386 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__O-25.1__bin.33 MASTER_WP4_UNINA_2__O-25.1__bin.33 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E putida Y cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-25.1__bin.4 67.7 0.3 5612 27746072 48.49 5930 SAMN36690303 SRR25395386 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__O-30__bin.13 MASTER_WP4_UNINA_2__O-30__bin.13 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium camemberti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-25.1__bin.16 98.6 0.1 392 11832052 36.26 70599 SAMN36690303 SRR25395386 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-26__bin.2 59.84848485 0.757575758 44 1588741 34.72 92640 SAMN36690176 SRR25395183 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__O-26.1__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-26__bin.3 61.97962154 0.145560408 77 927260 39.71 16810 SAMN36690176 SRR25395183 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-26__bin.8 94.75574713 2.507183908 270 3052126 61.48 20214 SAMN36690176 SRR25395183 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic MASTER_WP4_UNINA_2__O-29__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-26__bin.5 53.03030303 0 40 745757 50.89 29050 SAMN36690176 SRR25395183 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__O-25.1__bin.29 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-26.1__bin.20 96.06793744 0.378787879 72 2158014 35.11 63651 SAMN36690304 SRR25395385 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__O-26.1__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-26.1__bin.17 51.56299841 0 364 916325 37.82 2484 SAMN36690304 SRR25395385 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_UNINA_2__O-26.1__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-26.1__bin.5 51.30276565 0 74 803204 39.94 15710 SAMN36690304 SRR25395385 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-26.1__bin.15 86.40830346 2.796296296 659 2472308 32.49 4195 SAMN36690304 SRR25395385 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_UNINA_2__O-26.1__bin.15 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-26.1__bin.2 81.03448276 3.448275862 297 2791469 61.48 17985 SAMN36690304 SRR25395385 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic MASTER_WP4_UNINA_2__O-29__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-26.1__bin.21 67.24137931 0 58 864166 50.84 22115 SAMN36690304 SRR25395385 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__O-25.1__bin.29 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-26.1__bin.11 96.96236559 1.527777778 220 2865004 32.72 37559 SAMN36690304 SRR25395385 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-26.1__bin.16 84.83174284 1.657458564 19 2104018 32.94 381616 SAMN36690304 SRR25395385 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0167-001_Staphylococcus_succinus_BC15 MASTER_WP4_UNINA_1__SR008_71775__bin.14 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus succinus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-26.1__bin.12 75.86542638 1.969337735 1188 4007361 61.79 3703 SAMN36690304 SRR25395385 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__O-25.1__bin.33 MASTER_WP4_UNINA_2__O-25.1__bin.33 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E putida Y cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-26.1__bin.4 98.3 0.1 432 12094100 36.24 67336 SAMN36690304 SRR25395385 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-27__bin.9 94.17856147 1.598731884 323 2488524 46.59 10400 SAMN36690489 SRR25395087 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_357__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-27__bin.13 94.30681818 0.819444444 121 2289929 42.56 35509 SAMN36690489 SRR25395087 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-27__bin.3 81.65226136 2.097195042 158 2395103 38.36 28494 SAMN36690489 SRR25395087 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MagliuloR_2024__SRR28235359__bin.3 MASTER_WP4_UNINA_2__M-26.1__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-27__bin.10 63.39153587 2.795612627 547 1679124 38.02 3259 SAMN36690489 SRR25395087 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2235_73323__bin.9 MASTER_WP4_UNINA_2__O-27__bin.10 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-27__bin.4 98.9375 1.25 65 2483787 43.63 53916 SAMN36690489 SRR25395087 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 LandisEA_2021__SRS5653155__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-27__bin.6 53.54554676 1.132075472 133 1130109 36.11 11711 SAMN36690489 SRR25395087 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_178 MAG_178 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-27__bin.11 94.15584416 0 84 1447643 50.66 25927 SAMN36690489 SRR25395087 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_1__FO001_71775__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-27__bin.8 63.94984326 1.724137931 334 1830698 56.67 6805 SAMN36690489 SRR25395087 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308537__bin.18 MASTER_WP4_UNINA_2__O-27__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia endophytica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-28__bin.3 76.37304523 1.231060606 518 2002465 34.84 4460 SAMN36690490 SRR25395347 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__O-28__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-28__bin.1 56.044136 0.218340611 85 832880 38.66 14658 SAMN36690490 SRR25395347 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 FontanaF_2023__SRR20746838__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-28__bin.5 98.91304348 0 116 2503763 46.65 30539 SAMN36690490 SRR25395347 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-28__bin.6 85.38961039 0 57 1404697 50.78 37970 SAMN36690490 SRR25395347 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__O-25.1__bin.29 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-29__bin.13 95.06944444 1.893939394 176 2286283 35.02 26803 SAMN36690491 SRR25395346 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__O-26.1__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-29__bin.14 76.28820961 0.260189229 109 1223285 39.64 16059 SAMN36690491 SRR25395346 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-29__bin.9 93.60632184 1.221264368 239 2964317 61.4 22176 SAMN36690491 SRR25395346 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic MASTER_WP4_UNINA_2__O-29__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-29__bin.8 92.53246753 0 65 1604738 50.56 33303 SAMN36690491 SRR25395346 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__O-25.1__bin.29 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-29__bin.12 87.82894737 1.864035088 442 2511551 70.71 7128 SAMN36690491 SRR25395346 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__O-30__bin.2 MASTER_WP4_UNINA_2__O-30__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Kocuria Kocuria varians cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-29__bin.7 91 0.1 1979 31916151 48.52 23235 SAMN36690491 SRR25395346 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__O-30__bin.13 MASTER_WP4_UNINA_2__O-30__bin.13 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium camemberti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-29__bin.11 96.2 0.1 605 11717283 36.26 35575 SAMN36690491 SRR25395346 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-30__bin.16 94.38131313 0.568181818 313 2130951 35.17 10893 SAMN36690492 SRR25395345 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__O-26.1__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-30__bin.22 71.42857143 0 24 1182439 37.92 83967 SAMN36690492 SRR25395345 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-30__bin.6 77.86650031 0.353503847 115 1274772 39.69 16179 SAMN36690492 SRR25395345 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-30__bin.15 52.47983718 0.362318841 384 1242029 47 3580 SAMN36690492 SRR25395345 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_UNINA_2__O-30__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-30__bin.11 96.45459976 4.87962963 321 2693233 33.05 11809 SAMN36690492 SRR25395345 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-30__bin.14 92.63322884 1.58045977 273 2834895 61.47 21016 SAMN36690492 SRR25395345 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic MASTER_WP4_UNINA_2__O-29__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-30__bin.21 70.77922078 0 29 1008091 50.31 41629 SAMN36690492 SRR25395345 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__O-25.1__bin.29 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-30__bin.4 54.47205975 2.504604052 311 1016758 37.73 3347 SAMN36690492 SRR25395345 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308520__bin.4 MASTER_WP4_UNINA_2__O-30__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-30__bin.7 97.86134379 2.762430939 22 2599706 33.18 381616 SAMN36690492 SRR25395345 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0167-001_Staphylococcus_succinus_BC15 MASTER_WP4_UNINA_1__SR008_71775__bin.14 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus succinus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-30__bin.2 97.69736842 0.76754386 135 2664887 70.93 39747 SAMN36690492 SRR25395345 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__O-30__bin.2 MASTER_WP4_UNINA_2__O-30__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Kocuria Kocuria varians cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-30__bin.13 96 0.1 842 33121266 48.45 68939 SAMN36690492 SRR25395345 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__O-30__bin.13 MASTER_WP4_UNINA_2__O-30__bin.13 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium camemberti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__O-30__bin.18 98.2 0.1 441 11782194 36.28 52365 SAMN36690492 SRR25395345 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__P-27.0__bin.3 84.69945355 0 78 1336883 53.04 22904 SAMN36690493 SRR25395343 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF22__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__P-27.0__bin.1 73.24675325 0.649350649 76 1043930 50.93 19957 SAMN36690493 SRR25395343 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__P-28.0__bin.6 53.7815884 0.695570805 109 805021 39.77 8792 SAMN36690494 SRR25395342 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__P-28.0__bin.2 65.43715847 0 54 857239 52.89 20539 SAMN36690494 SRR25395342 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF22__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__P-28.0__bin.3 60.34482759 0 57 901403 50.99 24754 SAMN36690494 SRR25395342 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__S-27.0__bin.3 62.89318639 0.254730713 67 1085701 39.83 22395 SAMN36690531 SRR25394959 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__S-27.0__bin.5 89.61162969 0.46875 327 2081546 41.92 8018 SAMN36690531 SRR25394959 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__S-27.0__bin.4 58.62068966 0 77 703938 36.2 14229 SAMN36690531 SRR25394959 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__S-28.0__bin.4 67.31822278 0.400291121 70 1105376 39.81 22395 SAMN36690532 SRR25394958 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__S-28.0__bin.3 95.9375 0.538194444 193 2262353 41.84 19000 SAMN36690532 SRR25394958 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__S-28.0__bin.1 63.79310345 0.862068966 106 879253 36.26 12100 SAMN36690532 SRR25394958 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-23__bin.2 93.8490566 2.735849057 181 2650876 34.81 38933 SAMN36690214 SRR25395058 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-23__bin.3 91.55844156 0.878332194 180 1533185 36.62 11547 SAMN36690214 SRR25395058 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-23__bin.8 81.56343116 0.216450216 174 1400326 51.09 11131 SAMN36690214 SRR25395058 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-23.1__bin.1 84.27824063 4.100223169 627 2406546 34.49 4513 SAMN36690305 SRR25395384 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__T-23.1__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-23.1__bin.7 51.38282387 0 26 845481 39.4 44320 SAMN36690305 SRR25395384 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-23.1__bin.8 82.78688525 0 166 1227742 53.17 9513 SAMN36690305 SRR25395384 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 MASTER_WP4_UNINA_2__T-23.1__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-23.1__bin.3 96.52695789 0 142 1534109 50.94 17194 SAMN36690305 SRR25395384 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-23.1__bin.10 97.75280899 0.561797753 72 1574031 43.66 56421 SAMN36690305 SRR25395384 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-24__bin.2 95.35849057 1.163522013 123 2407338 34.92 37598 SAMN36690215 SRR25395057 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-24__bin.1 97.08776072 0.683526999 240 1890086 36.28 11596 SAMN36690215 SRR25395057 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-24__bin.8 55.07012809 0.12987013 266 844212 51.77 3351 SAMN36690215 SRR25395057 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__T-24__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-24.1__bin.11 93.5309973 1.713836478 291 2758747 34.7 20810 SAMN36690306 SRR25395383 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-24.1__bin.3 55.45851528 0 33 897675 39.36 42111 SAMN36690306 SRR25395383 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-24.1__bin.6 52.62820513 0.905797101 219 1162197 47.01 6180 SAMN36690306 SRR25395383 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_UNINA_2__T-24.1__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-24.1__bin.4 74.74238876 0.546448087 192 1201595 53.4 7466 SAMN36690306 SRR25395383 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 MASTER_WP4_UNINA_2__T-24.1__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-24.1__bin.10 91.95883007 0.649350649 222 1401385 51.09 7719 SAMN36690306 SRR25395383 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__T-24.1__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-24.1__bin.9 96.68028601 0.561797753 55 1582290 43.63 61028 SAMN36690306 SRR25395383 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-24.1__bin.8 93.65118577 0.634057971 84 2299085 48.33 42360 SAMN36690306 SRR25395383 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 CM_UNINA_FFOOD__FFOOD_415__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-25__bin.1 98.45283019 1.037735849 178 2636244 34.91 35617 SAMN36690216 SRR25395056 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-25__bin.5 80.35536746 1.744906096 443 1584777 36.08 4057 SAMN36690216 SRR25395056 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 MASTER_WP4_UNINA_2__T-25__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-25.1__bin.5 68.99580879 2.351641414 527 1597149 35.18 3260 SAMN36690307 SRR25395382 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__T-25.1__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-26__bin.1 90.89308176 1.191418138 128 2275785 34.79 42065 SAMN36690217 SRR25395055 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-26__bin.5 90.11237509 1.628787879 347 1911321 35.79 7880 SAMN36690217 SRR25395055 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-26.1__bin.1 97.73584906 2.424571776 279 2778265 34.68 18026 SAMN36690308 SRR25395381 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-26.1__bin.2 56.47743814 0 31 918501 39.16 42122 SAMN36690308 SRR25395381 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-26.1__bin.5 62.14558103 0.86627141 511 1535888 48.22 3135 SAMN36690308 SRR25395381 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 MASTER_WP4_UNINA_2__T-26.1__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-27__bin.9 53.48305261 0 25 873735 39.2 70728 SAMN36690533 SRR25394956 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-27__bin.3 98.31460674 0 58 1613233 43.6 41503 SAMN36690533 SRR25394956 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-28__bin.7 92.38554018 0.880053394 220 2090059 46.87 14014 SAMN36690534 SRR25394955 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-28__bin.8 79.84490077 1.19047619 286 1368501 51.04 5713 SAMN36690534 SRR25394955 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__T-28__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-28__bin.5 90.28423044 1.747815231 273 1351902 43.87 6269 SAMN36690534 SRR25394955 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-28__bin.4 59.6557971 0 62 1531855 48.27 38740 SAMN36690534 SRR25394955 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 CM_UNINA_FFOOD__FFOOD_415__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-29__bin.3 51.23726346 0 23 796068 39.71 63939 SAMN36690535 SRR25394954 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-29__bin.4 97.73550725 0.362318841 105 2656279 47.91 42698 SAMN36690535 SRR25394954 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 CM_UNINA_FFOOD__FFOOD_415__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-30__bin.4 62.26734511 0.852272727 495 1416593 35.42 3008 SAMN36690536 SRR25394953 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__T-30__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__T-30__bin.5 97.10144928 0.362318841 93 2599728 48.03 47088 SAMN36690536 SRR25394953 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_415__bin.4 CM_UNINA_FFOOD__FFOOD_415__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-23__bin.4 70.64263323 0 239 1876275 34.77 12741 SAMN36690218 SRR25395054 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-23__bin.16 99.20634921 3.323946066 200 1659787 37.88 12476 SAMN36690218 SRR25395054 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-23__bin.17 54.73354232 3.448275862 160 1393722 40.79 12888 SAMN36690218 SRR25395054 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 FontanaF_2023__SRR20746866__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-23__bin.1 66.24824308 0 279 1592713 47.03 6709 SAMN36690218 SRR25395054 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_UNINA_2__V-23__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-23__bin.9 81.72538973 0.485008818 318 1524217 39.23 5733 SAMN36690218 SRR25395054 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-23__bin.8 85.37735849 2.012578616 160 2124702 35.68 25226 SAMN36690218 SRR25395054 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_178 MAG_178 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-23__bin.12 75.12029779 0 183 1054619 51.36 6386 SAMN36690218 SRR25395054 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__V-23__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-23__bin.18 98.31460674 0 49 1477731 43.87 50974 SAMN36690218 SRR25395054 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-23__bin.14 63.50877193 0 772 3319245 59.13 5086 SAMN36690218 SRR25395054 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_900618535.1_TH39_genomic MASTER_WP4_UNINA_2__V-23__bin.14 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E bubulae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-23__bin.11 59.8490566 0.830188679 22 1178902 36.24 94285 SAMN36690218 SRR25395054 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__V-25__bin.15 MASTER_WP4_UNINA_2__V-25__bin.15 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A plantarum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-23.1__bin.4 99.45652174 0.543478261 60 1781922 41.94 44402 SAMN36690309 SRR25395380 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-23.1__bin.8 96.04377104 0.881834215 219 1717787 37.81 9846 SAMN36690309 SRR25395380 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-23.1__bin.19 84.97722464 3.522012579 177 1611994 40.65 12023 SAMN36690309 SRR25395380 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 FontanaF_2023__SRR20746866__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-23.1__bin.3 97.97844667 0.088990592 128 2340962 46.87 25904 SAMN36690309 SRR25395380 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-23.1__bin.17 65.87349453 3.679245283 311 1441893 39.12 5623 SAMN36690309 SRR25395380 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.11 MASTER_WP4_UNINA_2__V-23.1__bin.17 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A carnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-23.1__bin.18 90.75471698 1.446540881 141 1975395 35.55 24936 SAMN36690309 SRR25395380 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_178 MAG_178 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-23.1__bin.2 76.52037618 1.724137931 171 1984370 38.87 17697 SAMN36690309 SRR25395380 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 DeFilippisF_xxxx__DF_101__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-23.1__bin.1 70.83758938 0 31 927083 44.12 51354 SAMN36690309 SRR25395380 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-23.1__bin.9 67.71929825 1.754385965 743 4037997 59.09 6531 SAMN36690309 SRR25395380 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_900618535.1_TH39_genomic MASTER_WP4_UNINA_2__V-23.1__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E bubulae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-23.1__bin.10 96.99939136 1.823899371 40 1873668 36.37 75411 SAMN36690309 SRR25395380 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__V-25__bin.15 MASTER_WP4_UNINA_2__V-25__bin.15 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A plantarum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-23.1__bin.6 99.34086629 0.918079096 39 5207611 59.49 250070 SAMN36690309 SRR25395380 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__V-25.1__bin.6 MASTER_WP4_UNINA_2__V-25.1__bin.6 Pseudomonadota;Alphaproteobacteria;Rhizobiales;Rhizobiaceae;Agrobacterium Agrobacterium pusense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-24__bin.7 71.21734587 0 244 1902217 34.86 12688 SAMN36690219 SRR25395053 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-24__bin.15 96.7372134 1.886556295 202 1589927 37.9 11033 SAMN36690219 SRR25395053 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-24__bin.11 60.37043795 0.235507246 299 1539306 46.97 5775 SAMN36690219 SRR25395053 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_UNINA_2__V-24__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-24__bin.16 50 0 260 773343 35.78 3155 SAMN36690219 SRR25395053 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 LeechJ_2020__ERS3967700__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-24__bin.13 78.98274863 1.19047619 317 1447853 39.32 5112 SAMN36690219 SRR25395053 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-24__bin.6 96.22641509 4.163522013 223 2594422 35.34 23100 SAMN36690219 SRR25395053 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_178 MAG_178 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-24__bin.3 75.25114439 1.87400319 212 1169446 51.15 6294 SAMN36690219 SRR25395053 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__V-24__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-24__bin.8 84.22001512 3.444917833 146 1815528 39.19 19498 SAMN36690219 SRR25395053 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 DeFilippisF_xxxx__DF_101__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-24__bin.19 52.80898876 0 30 891524 43.95 40902 SAMN36690219 SRR25395053 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-24__bin.17 75.22079751 3.137735281 756 3410400 59.06 5180 SAMN36690219 SRR25395053 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_900618535.1_TH39_genomic MASTER_WP4_UNINA_2__V-24__bin.17 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E bubulae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-24__bin.20 55.17241379 0 22 1169184 36.2 108934 SAMN36690219 SRR25395053 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__V-25__bin.15 MASTER_WP4_UNINA_2__V-25__bin.15 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A plantarum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-24.1__bin.12 99.45652174 0.543478261 56 1742856 41.98 44789 SAMN36690310 SRR25395379 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-24.1__bin.5 96.22895623 1.25163566 212 1595435 37.97 11042 SAMN36690310 SRR25395379 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-24.1__bin.6 80.81232199 4.289308176 164 1545453 40.85 12627 SAMN36690310 SRR25395379 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 FontanaF_2023__SRR20746866__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-24.1__bin.7 88.76811594 0 110 2225087 46.84 36118 SAMN36690310 SRR25395379 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-24.1__bin.13 94.90566038 1.79245283 156 2030020 35.45 26076 SAMN36690310 SRR25395379 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_178 MAG_178 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-24.1__bin.16 89.88764045 0.187265918 66 1366158 43.87 38050 SAMN36690310 SRR25395379 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-24.1__bin.9 77.19298246 3.50877193 657 4184048 59.07 7817 SAMN36690310 SRR25395379 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_900618535.1_TH39_genomic MASTER_WP4_UNINA_2__V-24.1__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E bubulae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-24.1__bin.2 56.0754717 0.754716981 21 1118068 36.26 97000 SAMN36690310 SRR25395379 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__V-25__bin.15 MASTER_WP4_UNINA_2__V-25__bin.15 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A plantarum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-25__bin.8 73.27586207 1.724137931 249 2008952 34.76 13473 SAMN36690220 SRR25395052 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-25__bin.6 63.476874 1.754385965 317 1199760 39.39 4396 SAMN36690220 SRR25395052 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MASTER_WP4_UNINA_2__V-25__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-25__bin.5 89.38993711 4.603773585 212 2357295 35.42 23941 SAMN36690220 SRR25395052 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_178 MAG_178 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-25__bin.15 97.43761412 1.635220126 39 1862029 36.34 82005 SAMN36690220 SRR25395052 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__V-25__bin.15 MASTER_WP4_UNINA_2__V-25__bin.15 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A plantarum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-25.1__bin.22 98.91304348 0 60 1726696 42.07 42812 SAMN36690311 SRR25395378 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-25.1__bin.26 94.08168992 3.791887125 242 1466727 38.06 7368 SAMN36690311 SRR25395378 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-25.1__bin.5 68.81598702 2.264150943 144 1383121 40.62 13596 SAMN36690311 SRR25395378 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 FontanaF_2023__SRR20746866__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-25.1__bin.21 89.4242382 0.412137681 191 2158508 46.91 16010 SAMN36690311 SRR25395378 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-25.1__bin.14 91.26962873 1.383647799 122 1847917 35.52 27246 SAMN36690311 SRR25395378 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_178 MAG_178 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-25.1__bin.17 95.50561798 0.860252809 52 1455122 43.88 45336 SAMN36690311 SRR25395378 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-25.1__bin.10 72.98245614 3.50877193 785 4377197 58.93 6765 SAMN36690311 SRR25395378 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_900618535.1_TH39_genomic MASTER_WP4_UNINA_2__V-25.1__bin.10 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E bubulae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-25.1__bin.18 95.81862447 3.710691824 61 1990779 36.26 78475 SAMN36690311 SRR25395378 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__V-25__bin.15 MASTER_WP4_UNINA_2__V-25__bin.15 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A plantarum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-25.1__bin.1 99.38650307 0 25 1654339 40.86 155042 SAMN36690311 SRR25395378 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__V-25.1__bin.1 MASTER_WP4_UNINA_2__V-25.1__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella viridescens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-25.1__bin.12 99.44751381 0.801104972 161 2804547 36.13 40728 SAMN36690311 SRR25395378 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001703515.1_ASM170351v1_genomic GCF_001703515.1_ASM170351v1_genomic Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-25.1__bin.6 99.34086629 0.494350282 25 4981189 59.48 376885 SAMN36690311 SRR25395378 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__V-25.1__bin.6 MASTER_WP4_UNINA_2__V-25.1__bin.6 Pseudomonadota;Alphaproteobacteria;Rhizobiales;Rhizobiaceae;Agrobacterium Agrobacterium pusense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-25.1__bin.20 98.5 0.3 312 11737973 36.27 79900 SAMN36690311 SRR25395378 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-25.1__bin.8 98.6 0 155 13902401 38.7 154037 SAMN36690311 SRR25395378 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCA_003243815.1_ASM324381v1_genomic GCA_003243815.1_ASM324381v1_genomic Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Spathaspora Candida sake cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-26__bin.19 72.02194357 1.724137931 230 1896460 34.74 13473 SAMN36690221 SRR25395051 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-26__bin.5 67.14513557 1.754385965 340 1468320 39.28 5341 SAMN36690221 SRR25395051 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MASTER_WP4_UNINA_2__V-26__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-26__bin.6 95.28301887 4.79245283 323 2904128 35.25 20038 SAMN36690221 SRR25395051 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_178 MAG_178 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-26__bin.16 67.24137931 0 24 844510 43.96 56422 SAMN36690221 SRR25395051 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-26__bin.18 74.2057557 2.435064935 845 3038640 59.13 4045 SAMN36690221 SRR25395051 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_900618535.1_TH39_genomic MASTER_WP4_UNINA_2__V-26__bin.18 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E bubulae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-26__bin.10 97.71150335 1.858204688 49 1953342 36.34 104281 SAMN36690221 SRR25395051 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__V-25__bin.15 MASTER_WP4_UNINA_2__V-25__bin.15 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A plantarum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-26__bin.2 78.26629748 2.482251521 548 2340329 61.73 5143 SAMN36690221 SRR25395051 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q06-22__bin.2 MASTER_WP4_UNINA_2__V-26__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter canadensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-26.1__bin.13 99.45652174 0 58 1782676 42.03 43251 SAMN36690312 SRR25395377 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-26.1__bin.28 89.49214366 3.306878307 228 1454698 38.03 8313 SAMN36690312 SRR25395377 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-26.1__bin.3 84.13380918 2.156015419 161 1591952 40.59 13878 SAMN36690312 SRR25395377 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 FontanaF_2023__SRR20746866__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-26.1__bin.20 91.92934783 0.857408467 167 2240065 46.9 17609 SAMN36690312 SRR25395377 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-26.1__bin.14 50.47021944 1.724137931 388 1208061 37.01 3413 SAMN36690312 SRR25395377 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967741__bin.9 MASTER_WP4_UNINA_2__V-26.1__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc gasicomitatum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-26.1__bin.7 56.89655172 4.310344828 383 1612037 39.08 4888 SAMN36690312 SRR25395377 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.11 MASTER_WP4_UNINA_2__V-26.1__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A carnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-26.1__bin.22 94.99087036 3.647798742 195 2178990 35.59 21329 SAMN36690312 SRR25395377 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_178 MAG_178 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-26.1__bin.31 98.31460674 0.01755618 68 1483455 43.89 37973 SAMN36690312 SRR25395377 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-26.1__bin.18 78.07017544 0 701 4345988 58.99 7978 SAMN36690312 SRR25395377 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_900618535.1_TH39_genomic GCF_900618535.1_TH39_genomic Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E bubulae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-26.1__bin.12 71.52769324 1.257861635 39 1315190 36.5 75403 SAMN36690312 SRR25395377 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__V-25__bin.15 MASTER_WP4_UNINA_2__V-25__bin.15 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A plantarum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-26.1__bin.4 55.82822086 0.545330607 18 1013221 40.97 119568 SAMN36690312 SRR25395377 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__V-25.1__bin.1 MASTER_WP4_UNINA_2__V-25.1__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella viridescens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-26.1__bin.2 96.40883978 1.289134438 171 2738977 36.16 35704 SAMN36690312 SRR25395377 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001703515.1_ASM170351v1_genomic GCF_001703515.1_ASM170351v1_genomic Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-26.1__bin.24 99.31164361 0.517890772 20 4939925 59.53 338650 SAMN36690312 SRR25395377 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__V-25.1__bin.6 MASTER_WP4_UNINA_2__V-25.1__bin.6 Pseudomonadota;Alphaproteobacteria;Rhizobiales;Rhizobiaceae;Agrobacterium Agrobacterium pusense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-26.1__bin.11 52.06896552 0 973 4018282 57.46 4611 SAMN36690312 SRR25395377 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__V-26.1__bin.11 MASTER_WP4_UNINA_2__V-26.1__bin.11 Pseudomonadota;Alphaproteobacteria;Rhizobiales;Rhizobiaceae;Agrobacterium Agrobacterium sp005938205 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-26.1__bin.16 96.6 0.1 349 11612668 36.26 80461 SAMN36690312 SRR25395377 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-26.1__bin.6 85.8 0 1590 13007751 38.78 10688 SAMN36690312 SRR25395377 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCA_003243815.1_ASM324381v1_genomic GCA_003243815.1_ASM324381v1_genomic Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Spathaspora Candida sake cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-27__bin.1 97.2826087 0.543478261 61 1788099 41.96 47690 SAMN36690539 SRR25394950 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-27__bin.5 78.40125392 3.448275862 187 2116418 34.56 21383 SAMN36690539 SRR25394950 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-27__bin.12 95.05888377 1.76366843 150 1667200 37.84 19703 SAMN36690539 SRR25394950 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-27__bin.8 94.74363951 1.96557971 211 2265487 46.86 15080 SAMN36690539 SRR25394950 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-27__bin.15 55.95611285 0.313479624 92 1017518 35.86 17714 SAMN36690539 SRR25394950 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-27__bin.16 79.81910946 0.541125541 229 1330602 51.14 7192 SAMN36690539 SRR25394950 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__V-27__bin.16 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-27__bin.17 92.54615541 4.465408805 189 2055448 36.02 22515 SAMN36690539 SRR25394950 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__V-25__bin.15 MASTER_WP4_UNINA_2__V-25__bin.15 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A plantarum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-28__bin.14 96.73913043 0.543478261 65 1758494 42.02 41684 SAMN36690540 SRR25394949 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-28__bin.13 92.19499139 1.534391534 241 1655253 37.79 8974 SAMN36690540 SRR25394949 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-28__bin.3 59.56401192 0.295279684 124 906992 39.75 9854 SAMN36690540 SRR25394949 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 FontanaF_2023__SRR20746925__bin.9 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-28__bin.23 82.63166049 3.20754717 193 1632580 40.68 11353 SAMN36690540 SRR25394949 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 FontanaF_2023__SRR20746866__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-28__bin.20 86.68478261 0.290900223 142 2149336 46.89 29359 SAMN36690540 SRR25394949 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-28__bin.10 82.26415094 2.452830189 163 1941027 35.5 26693 SAMN36690540 SRR25394949 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_178 MAG_178 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-28__bin.16 85.73774876 4.34339043 178 2080871 38.98 20420 SAMN36690540 SRR25394949 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 DeFilippisF_xxxx__DF_101__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-28__bin.4 98.31460674 0 53 1491281 43.85 50974 SAMN36690540 SRR25394949 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-28__bin.15 66.66666667 1.754385965 650 4353407 59.02 8563 SAMN36690540 SRR25394949 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_900618535.1_TH39_genomic MASTER_WP4_UNINA_2__V-28__bin.15 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E bubulae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-28__bin.19 87.21850274 1.823899371 34 1681625 36.31 93562 SAMN36690540 SRR25394949 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__V-25__bin.15 MASTER_WP4_UNINA_2__V-25__bin.15 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A plantarum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-29__bin.14 67.63256394 0.938395079 146 1143754 39.69 10895 SAMN36690541 SRR25394792 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-29__bin.11 97.47593026 2.076502732 463 4577161 53.67 14378 SAMN36690541 SRR25394792 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q04-21__bin.16 AlvarezOrdonezA_xxxx__Q04-21__bin.16 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Rahnella Rahnella inusitata cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-29__bin.17 99.44444444 3.383838384 149 2897026 32.86 77106 SAMN36690541 SRR25394792 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-29__bin.6 90.36550294 0.674157303 196 1345548 44.14 9103 SAMN36690541 SRR25394792 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-29__bin.7 85.39536916 1.506116208 357 2905796 59.71 11872 SAMN36690541 SRR25394792 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_323 MAG_436 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-29__bin.30 60.39809961 1.162079511 294 2195407 55.64 11059 SAMN36690541 SRR25394792 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_114__bin.22 MASTER_WP4_UNINA_2__V-29__bin.30 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-29__bin.10 98.71086556 0.73664825 204 2388947 36.34 15915 SAMN36690541 SRR25394792 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001703515.1_ASM170351v1_genomic GCF_001703515.1_ASM170351v1_genomic Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-29__bin.27 97.97421731 2.900552486 269 3027939 32.08 26208 SAMN36690541 SRR25394792 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811284__bin.4 FalardeauJ_2023__SRR20811284__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Mammaliicoccus Mammaliicoccus vitulinus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-29__bin.29 68.12865497 0.194931774 18 1734625 61.16 287279 SAMN36690541 SRR25394792 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__V-29__bin.29 MASTER_WP4_UNINA_2__V-29__bin.29 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Arthrobacter Arthrobacter sp030063285 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-29__bin.1 88.46384884 3.73525557 483 3983382 55.94 11890 SAMN36690541 SRR25394792 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__V-29__bin.1 MASTER_WP4_UNINA_2__V-29__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter sp004320535 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-29__bin.28 81.49346004 4.599427754 660 2616857 41.68 4636 SAMN36690541 SRR25394792 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__V-29__bin.28 MASTER_WP4_UNINA_2__V-29__bin.28 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Marinomonadaceae;Marinomonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-29__bin.15 97.6 0.1 613 11871383 36.28 36621 SAMN36690541 SRR25394792 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-29__bin.22 98.5 0.1 219 13878384 38.71 108673 SAMN36690541 SRR25394792 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCA_003243815.1_ASM324381v1_genomic GCA_003243815.1_ASM324381v1_genomic Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Spathaspora Candida sake cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-30__bin.26 98.91304348 1.086956522 123 1805937 42.07 26159 SAMN36690542 SRR25394791 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-30__bin.18 98.90766342 0.665642601 104 1759728 37.76 27843 SAMN36690542 SRR25394791 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-30__bin.4 62.73410966 0.709606987 123 1091173 39.81 12144 SAMN36690542 SRR25394791 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 FontanaF_2023__SRR20746925__bin.9 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-30__bin.29 96.91652807 1.181628936 402 4433553 53.78 16138 SAMN36690542 SRR25394791 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q04-21__bin.16 AlvarezOrdonezA_xxxx__Q04-21__bin.16 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Rahnella Rahnella inusitata cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-30__bin.30 78.18721385 3.464419476 375 1412617 37.11 4269 SAMN36690542 SRR25394791 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967741__bin.9 MASTER_WP4_UNINA_2__V-30__bin.30 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc gasicomitatum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-30__bin.19 85.75935301 1.872659176 202 1302174 44.15 7858 SAMN36690542 SRR25394791 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_245__bin.2 CM_UNINA_FFOOD__FFOOD_245__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-30__bin.3 71.6011941 2.999594238 360 1260528 36.89 3966 SAMN36690542 SRR25394791 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__V-25__bin.15 MASTER_WP4_UNINA_2__V-25__bin.15 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A plantarum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-30__bin.22 90.60943644 2.889908257 313 3300043 59.59 16931 SAMN36690542 SRR25394791 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_323 MAG_436 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-30__bin.5 51.84162063 0.276243094 146 1305695 36.49 12786 SAMN36690542 SRR25394791 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001703515.1_ASM170351v1_genomic GCF_001703515.1_ASM170351v1_genomic Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-30__bin.10 98.2 0 284 13869402 38.74 95460 SAMN36690542 SRR25394791 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCA_003243815.1_ASM324381v1_genomic GCA_003243815.1_ASM324381v1_genomic Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Spathaspora Candida sake cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-30__bin.11 52.5 0 228 5898345 55.85 38859 SAMN36690542 SRR25394791 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2561__bin.3 MASTER_WP4_UNINA_2__V-30__bin.11 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Kurtzmaniella Candida zeylanoides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-30__bin.15 88 0.1 928 9478124 35.8 14520 SAMN36690542 SRR25394791 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__V-30__bin.15 MASTER_WP4_UNINA_2__V-30__bin.15 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;unknown unknown cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_UNINA_2__V-30__bin.25 98.9 0.2 329 11795040 36.27 87806 SAMN36690542 SRR25394791 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MilaniC_2019__SRS3591582__bin.15 95.08733624 0.194080543 58 1613658 39.24 40114 SRS3591582 SRR7587240 Italy PRJNA482503 SRP155009 NCBI Milani C, Duranti S, Napoli S, Alessandri G, Mancabelli L, Anzalone R, Longhi G, Viappiani A, Mangifesta M, Lugli GA, Bernasconi S, Ossiprandi MC, van Sinderen D, Ventura M, Turroni F. Colonization of the human gut by bovine bacteria present in Parmesan cheese. Nat Commun. 2019 Mar 20;10(1):1286. doi: 10.1038/s41467-019-09303-w. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MilaniC_2019__SRS3591582__bin.12 93.22727273 3.272727273 286 1799028 64.52 8372 SRS3591582 SRR7587240 Italy PRJNA482503 SRP155009 NCBI Milani C, Duranti S, Napoli S, Alessandri G, Mancabelli L, Anzalone R, Longhi G, Viappiani A, Mangifesta M, Lugli GA, Bernasconi S, Ossiprandi MC, van Sinderen D, Ventura M, Turroni F. Colonization of the human gut by bovine bacteria present in Parmesan cheese. Nat Commun. 2019 Mar 20;10(1):1286. doi: 10.1038/s41467-019-09303-w. CM_UNINA_FFOOD__FFOOD_296__bin.3 MilaniC_2019__SRS3591582__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MilaniC_2019__SRS3591582__bin.19 97.95081967 0.273224044 158 1649727 53.33 14799 SRS3591582 SRR7587240 Italy PRJNA482503 SRP155009 NCBI Milani C, Duranti S, Napoli S, Alessandri G, Mancabelli L, Anzalone R, Longhi G, Viappiani A, Mangifesta M, Lugli GA, Bernasconi S, Ossiprandi MC, van Sinderen D, Ventura M, Turroni F. Colonization of the human gut by bovine bacteria present in Parmesan cheese. Nat Commun. 2019 Mar 20;10(1):1286. doi: 10.1038/s41467-019-09303-w. FontanaF_2023__SRR20746839__bin.4 FontanaF_2023__SRR20746839__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MilaniC_2019__SRS3591582__bin.8 72.47920049 0.958333333 444 1871302 43.67 5013 SRS3591582 SRR7587240 Italy PRJNA482503 SRP155009 NCBI Milani C, Duranti S, Napoli S, Alessandri G, Mancabelli L, Anzalone R, Longhi G, Viappiani A, Mangifesta M, Lugli GA, Bernasconi S, Ossiprandi MC, van Sinderen D, Ventura M, Turroni F. Colonization of the human gut by bovine bacteria present in Parmesan cheese. Nat Commun. 2019 Mar 20;10(1):1286. doi: 10.1038/s41467-019-09303-w. LandisEA_2021__SRS5653155__bin.1 MilaniC_2019__SRS3591582__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MilaniC_2019__SRS3591582__bin.18 92.14285714 0 105 1420051 50.92 19609 SRS3591582 SRR7587240 Italy PRJNA482503 SRP155009 NCBI Milani C, Duranti S, Napoli S, Alessandri G, Mancabelli L, Anzalone R, Longhi G, Viappiani A, Mangifesta M, Lugli GA, Bernasconi S, Ossiprandi MC, van Sinderen D, Ventura M, Turroni F. Colonization of the human gut by bovine bacteria present in Parmesan cheese. Nat Commun. 2019 Mar 20;10(1):1286. doi: 10.1038/s41467-019-09303-w. GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_33__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MilaniC_2019__SRS3591582__bin.10 62.06896552 0 106 847842 35.95 10880 SRS3591582 SRR7587240 Italy PRJNA482503 SRP155009 NCBI Milani C, Duranti S, Napoli S, Alessandri G, Mancabelli L, Anzalone R, Longhi G, Viappiani A, Mangifesta M, Lugli GA, Bernasconi S, Ossiprandi MC, van Sinderen D, Ventura M, Turroni F. Colonization of the human gut by bovine bacteria present in Parmesan cheese. Nat Commun. 2019 Mar 20;10(1):1286. doi: 10.1038/s41467-019-09303-w. FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MilaniC_2019__SRS3591582__bin.4 94.26048565 0.993377483 346 2283791 72.21 9057 SRS3591582 SRR7587240 Italy PRJNA482503 SRP155009 NCBI Milani C, Duranti S, Napoli S, Alessandri G, Mancabelli L, Anzalone R, Longhi G, Viappiani A, Mangifesta M, Lugli GA, Bernasconi S, Ossiprandi MC, van Sinderen D, Ventura M, Turroni F. Colonization of the human gut by bovine bacteria present in Parmesan cheese. Nat Commun. 2019 Mar 20;10(1):1286. doi: 10.1038/s41467-019-09303-w. CM_UNINA_FFOOD__FFOOD_286__bin.4 MilaniC_2019__SRS3591582__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia kristinae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MilaniC_2019__SRS3591582__bin.20 52.42324561 3.026315789 747 1958144 69.12 2743 SRS3591582 SRR7587240 Italy PRJNA482503 SRP155009 NCBI Milani C, Duranti S, Napoli S, Alessandri G, Mancabelli L, Anzalone R, Longhi G, Viappiani A, Mangifesta M, Lugli GA, Bernasconi S, Ossiprandi MC, van Sinderen D, Ventura M, Turroni F. Colonization of the human gut by bovine bacteria present in Parmesan cheese. Nat Commun. 2019 Mar 20;10(1):1286. doi: 10.1038/s41467-019-09303-w. MASTER_WP4_CSIC_2__P2517__bin.17 MilaniC_2019__SRS3591582__bin.20 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Acidipropionibacterium Acidipropionibacterium jensenii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MilaniC_2019__SRS3591582__bin.17 83.2 0.5 163 8808512 50.25 102881 SRS3591582 SRR7587240 Italy PRJNA482503 SRP155009 NCBI Milani C, Duranti S, Napoli S, Alessandri G, Mancabelli L, Anzalone R, Longhi G, Viappiani A, Mangifesta M, Lugli GA, Bernasconi S, Ossiprandi MC, van Sinderen D, Ventura M, Turroni F. Colonization of the human gut by bovine bacteria present in Parmesan cheese. Nat Commun. 2019 Mar 20;10(1):1286. doi: 10.1038/s41467-019-09303-w. MilaniC_2019__SRS3591582__bin.17 MilaniC_2019__SRS3591582__bin.17 Ascomycota;Saccharomycetes;Saccharomycetales;Trichomonascaceae;Wickerhamiella Wickerhamiella pararugosa cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MilaniC_2019__SRS3591582__bin.9 64 0.3 1672 7651286 36.17 5658 SRS3591582 SRR7587240 Italy PRJNA482503 SRP155009 NCBI Milani C, Duranti S, Napoli S, Alessandri G, Mancabelli L, Anzalone R, Longhi G, Viappiani A, Mangifesta M, Lugli GA, Bernasconi S, Ossiprandi MC, van Sinderen D, Ventura M, Turroni F. Colonization of the human gut by bovine bacteria present in Parmesan cheese. Nat Commun. 2019 Mar 20;10(1):1286. doi: 10.1038/s41467-019-09303-w. MASTER_WP4_UNINA_2__A-22__bin.12 MilaniC_2019__SRS3591582__bin.9 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia norvegensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MilaniC_2019__SRS3591585__bin.3 98.71179039 0.218340611 59 1695055 39.06 44504 SRS3591585 SRR7587236 Italy PRJNA482503 SRP155009 NCBI Milani C, Duranti S, Napoli S, Alessandri G, Mancabelli L, Anzalone R, Longhi G, Viappiani A, Mangifesta M, Lugli GA, Bernasconi S, Ossiprandi MC, van Sinderen D, Ventura M, Turroni F. Colonization of the human gut by bovine bacteria present in Parmesan cheese. Nat Commun. 2019 Mar 20;10(1):1286. doi: 10.1038/s41467-019-09303-w. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MilaniC_2019__SRS3591585__bin.5 50 1.724137931 110 710778 35.78 8369 SRS3591585 SRR7587236 Italy PRJNA482503 SRP155009 NCBI Milani C, Duranti S, Napoli S, Alessandri G, Mancabelli L, Anzalone R, Longhi G, Viappiani A, Mangifesta M, Lugli GA, Bernasconi S, Ossiprandi MC, van Sinderen D, Ventura M, Turroni F. Colonization of the human gut by bovine bacteria present in Parmesan cheese. Nat Commun. 2019 Mar 20;10(1):1286. doi: 10.1038/s41467-019-09303-w. FontanaF_2023__SRR20746979__bin.3 MASTER_WP4_UNINA_1__PA207_73417__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870567__bin.7 99.72826087 1.902173913 152 1737750 42.09 17481 SRS2870567 SRR6514690 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870567__bin.12 50.94339623 0.754716981 73 901797 35.39 20377 SRS2870567 SRR6514690 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870567__bin.3 63.60467905 2.36863748 160 2679230 55.59 27783 SRS2870567 SRR6514690 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). FontanaF_2023__SRR20746854__bin.2 PfeferT_xxxx__SRS2870592__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter Enterobacter intestinihominis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870568__bin.4 99.52830189 0.754716981 116 2304463 35.06 37675 SRS2870568 SRR6514689 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870568__bin.2 53.3331152 0.618356914 359 2187166 51.63 7690 SRS2870568 SRR6514689 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). LeechJ_2020__ERS3967688__bin.2 PfeferT_xxxx__SRS2870590__bin.3 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870569__bin.1 99.62264151 0.314465409 146 2303540 35.05 29976 SRS2870569 SRR6514688 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870569__bin.4 92.96913736 2.316942317 235 4638070 55.19 35270 SRS2870569 SRR6514688 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). DeFilippisF_xxxx__DF_79__bin.11 PfeferT_xxxx__SRS2870569__bin.4 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter Enterobacter kobei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870569__bin.5 59.05775627 1.18466899 356 2409433 51.48 8847 SRS2870569 SRR6514688 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). LeechJ_2020__ERS3967688__bin.2 PfeferT_xxxx__SRS2870590__bin.3 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870570__bin.2 73.03773585 0.566037736 82 1411631 35.18 27686 SRS2870570 SRR6514686 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870571__bin.5 99.16981132 1.132075472 111 2366535 34.95 38414 SRS2870571 SRR6514687 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870571__bin.2 63.08777429 1.724137931 594 2591336 51.17 5159 SRS2870571 SRR6514687 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). LeechJ_2020__ERS3967688__bin.2 PfeferT_xxxx__SRS2870571__bin.2 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870572__bin.4 57.05329154 0 344 1308588 35.09 4249 SRS2870572 SRR6514685 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 PfeferT_xxxx__SRS2870572__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870573__bin.3 50 0 248 1356057 35.09 6164 SRS2870573 SRR6514684 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870574__bin.2 57.75862069 0 251 1348270 35.25 6235 SRS2870574 SRR6514683 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 PfeferT_xxxx__SRS2870574__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870575__bin.1 69.21383648 0.377358491 75 1567806 35.1 36257 SRS2870575 SRR6514682 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870576__bin.3 54.12247475 0.378787879 64 1106384 35.13 30559 SRS2870576 SRR6514680 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870577__bin.1 75.77358491 0.377358491 87 1433891 35.37 30687 SRS2870577 SRR6514681 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870578__bin.2 73.41509434 0.943396226 72 1404695 35.33 32469 SRS2870578 SRR6514679 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870579__bin.4 98.91304348 0 87 1896134 41.92 37216 SRS2870579 SRR6514678 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870579__bin.9 54.54545455 0 37 3195683 56.01 111085 SRS2870579 SRR6514678 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). FontanaF_2023__SRR20746851__bin.6 FontanaF_2023__SRR20746851__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella grimontii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870580__bin.1 84.90931223 0.943396226 100 1806113 35.14 28301 SRS2870580 SRR6514677 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870581__bin.4 63.96226415 0.754716981 70 1157906 35.27 27254 SRS2870581 SRR6514676 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870582__bin.1 67.79874214 0.377358491 66 1251901 35.31 29971 SRS2870582 SRR6514675 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870583__bin.4 57.68939394 0.378787879 55 1181783 35.43 38733 SRS2870583 SRR6514674 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870583__bin.2 55.17241379 0.862068966 328 1331826 35.13 4816 SRS2870583 SRR6514674 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 PfeferT_xxxx__SRS2870583__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870584__bin.3 52.08333333 0.378787879 57 1047567 35.3 34471 SRS2870584 SRR6514673 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870585__bin.2 75.55345912 0.377358491 72 1468015 35.3 29581 SRS2870585 SRR6514672 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870586__bin.1 60.56603774 0.754716981 68 1060350 35.37 26712 SRS2870586 SRR6514671 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870588__bin.1 79.83018868 1.320754717 72 1504834 35.37 34471 SRS2870588 SRR6514669 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870589__bin.1 52.48106061 0 50 1029043 35.31 36186 SRS2870589 SRR6514668 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870590__bin.4 99.24528302 1.509433962 140 2256400 35.07 29617 SRS2870590 SRR6514667 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870590__bin.3 96.58253036 1.656314976 303 4394101 50.94 22925 SRS2870590 SRR6514667 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). LeechJ_2020__ERS3967688__bin.2 PfeferT_xxxx__SRS2870590__bin.3 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870591__bin.1 87.69127322 2.625786164 545 2167718 34.66 4753 SRS2870591 SRR6514666 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). MAG_501 PfeferT_xxxx__SRS2870591__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870591__bin.4 57.12543029 1.891344027 567 2077389 51.63 4129 SRS2870591 SRR6514666 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). LeechJ_2020__ERS3967688__bin.2 PfeferT_xxxx__SRS2870591__bin.4 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870592__bin.7 97.82608696 0.610416932 196 1711302 42.1 12149 SRS2870592 SRR6514665 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870592__bin.6 66.53605016 1.724137931 223 4723757 55.26 37609 SRS2870592 SRR6514665 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). FontanaF_2023__SRR20746854__bin.2 PfeferT_xxxx__SRS2870592__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter Enterobacter intestinihominis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870592__bin.10 54.54545455 0 40 2775059 56.01 106840 SRS2870592 SRR6514665 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). FontanaF_2023__SRR20746851__bin.6 FontanaF_2023__SRR20746851__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella grimontii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870593__bin.5 94.41123188 1.630434783 253 1696084 42.08 8799 SRS2870593 SRR6514664 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870593__bin.2 67.54716981 0.754716981 87 1307332 35.29 27989 SRS2870593 SRR6514664 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870593__bin.6 61.30884498 0.144675926 44 3263423 55.83 149051 SRS2870593 SRR6514664 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). FontanaF_2023__SRR20746851__bin.6 FontanaF_2023__SRR20746851__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella grimontii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870594__bin.11 98.91304348 0.543478261 127 1768483 42.07 19644 SRS2870594 SRR6514663 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870594__bin.9 55.94339623 0.754716981 68 1012750 35.4 25763 SRS2870594 SRR6514663 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870595__bin.3 99.45652174 1.630434783 145 1915951 41.86 18052 SRS2870595 SRR6514662 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870596__bin.9 94.34899486 0.543478261 189 1698917 42.03 13565 SRS2870596 SRR6514661 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870597__bin.6 90.57971014 1.358695652 232 1546878 42.07 9149 SRS2870597 SRR6514660 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870597__bin.2 70.1754386 0 475 5232622 56.35 17645 SRS2870597 SRR6514660 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). FontanaF_2023__SRR20746851__bin.6 FontanaF_2023__SRR20746851__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella grimontii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870598__bin.2 99.24528302 0.566037736 128 2431851 34.84 37813 SRS2870598 SRR6514658 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870599__bin.8 99.9245283 0.566037736 110 2280458 35.06 39175 SRS2870599 SRR6514659 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870600__bin.6 99.1509434 0.943396226 102 2196580 35 37904 SRS2870600 SRR6514656 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870600__bin.7 55.92197901 0.15412415 39 2414380 55.53 111479 SRS2870600 SRR6514656 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). FontanaF_2023__SRR20746854__bin.2 PfeferT_xxxx__SRS2870592__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter Enterobacter intestinihominis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870600__bin.3 60.68580542 0.877192982 90 4021500 56.05 76980 SRS2870600 SRR6514656 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). FontanaF_2023__SRR20746851__bin.6 FontanaF_2023__SRR20746851__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella grimontii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870601__bin.5 98.86792453 0.377358491 166 2398528 35.02 28513 SRS2870601 SRR6514657 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870602__bin.5 96.98113208 0.188679245 83 2110555 35.09 45631 SRS2870602 SRR6514655 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PfeferT_xxxx__SRS2870602__bin.6 61.82029738 0.917341043 322 2543582 51.68 10475 SRS2870602 SRR6514655 USA PRJNA430402 SRP131494 NCBI Pfefer, T. (2016). Evaluation of enriched microflora of raw milk cheese spiked with E. coli O157:H7 and E. coli O103 using next-generation sequencing technology. In IAFP 2016 Annual Meeting (Iafp). LeechJ_2020__ERS3967688__bin.2 PfeferT_xxxx__SRS2870590__bin.3 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PorcellatoD_2016__1m-1_S9__bin.3 77.15184187 0.566037736 223 1778941 35.27 11509 NA raw_norm_1m-1 Norway NA NA MG-RAST Porcellato, D., and Skeie, S.B. (2016). Bacterial dynamics and functional analysis of microbial metagenomes during ripening of Dutch-type cheese. Int. Dairy J. 61, 182–188. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PorcellatoD_2016__1m-2_S10__bin.1 91.79245283 0.943396226 252 1980832 35.48 10096 NA raw_norm_1m-2 Norway NA NA MG-RAST Porcellato, D., and Skeie, S.B. (2016). Bacterial dynamics and functional analysis of microbial metagenomes during ripening of Dutch-type cheese. Int. Dairy J. 61, 182–188. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PorcellatoD_2016__1m-3_S11__bin.1 89.65408805 1.41509434 284 1935597 35.55 9070 NA raw_norm_1m-3 Norway NA NA MG-RAST Porcellato, D., and Skeie, S.B. (2016). Bacterial dynamics and functional analysis of microbial metagenomes during ripening of Dutch-type cheese. Int. Dairy J. 61, 182–188. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PorcellatoD_2016__1m-4_S12__bin.1 96.62264151 0.503144654 240 2100662 35.64 12365 NA raw_norm_1m-4 Norway NA NA MG-RAST Porcellato, D., and Skeie, S.B. (2016). Bacterial dynamics and functional analysis of microbial metagenomes during ripening of Dutch-type cheese. Int. Dairy J. 61, 182–188. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PorcellatoD_2016__24h-1_S1__bin.1 89.47504565 1.163522013 297 1838624 35.73 7865 mgs335082 raw_norm_24h-1 Norway NA NA MG-RAST Porcellato, D., and Skeie, S.B. (2016). Bacterial dynamics and functional analysis of microbial metagenomes during ripening of Dutch-type cheese. Int. Dairy J. 61, 182–188. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PorcellatoD_2016__24h-2_S3__bin.1 91.03693882 1.257861635 334 1938967 35.6 7186 mgs335085 raw_norm_24h-2 Norway NA NA MG-RAST Porcellato, D., and Skeie, S.B. (2016). Bacterial dynamics and functional analysis of microbial metagenomes during ripening of Dutch-type cheese. Int. Dairy J. 61, 182–188. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PorcellatoD_2016__24h-3_S5__bin.1 87.57861635 0.503144654 324 1851703 35.51 7513 mgs335088 raw_norm_24h-3 Norway NA NA MG-RAST Porcellato, D., and Skeie, S.B. (2016). Bacterial dynamics and functional analysis of microbial metagenomes during ripening of Dutch-type cheese. Int. Dairy J. 61, 182–188. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PorcellatoD_2016__24h-4_S7__bin.1 91.21148886 1.823899371 326 1873506 35.66 7293 mgs335091 raw_norm_24h-4 Norway NA NA MG-RAST Porcellato, D., and Skeie, S.B. (2016). Bacterial dynamics and functional analysis of microbial metagenomes during ripening of Dutch-type cheese. Int. Dairy J. 61, 182–188. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PorcellatoD_2016__3m-1_S2__bin.1 89.98652291 1.257861635 262 1885874 35.49 9367 mgs335094 raw_norm_3m-1 Norway NA NA MG-RAST Porcellato, D., and Skeie, S.B. (2016). Bacterial dynamics and functional analysis of microbial metagenomes during ripening of Dutch-type cheese. Int. Dairy J. 61, 182–188. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PorcellatoD_2016__3m-2_S4__bin.1 91.08439846 1.018867925 257 1923523 35.68 9569 mgs335097 raw_norm_3m-2 Norway NA NA MG-RAST Porcellato, D., and Skeie, S.B. (2016). Bacterial dynamics and functional analysis of microbial metagenomes during ripening of Dutch-type cheese. Int. Dairy J. 61, 182–188. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PorcellatoD_2016__3m-3_S6__bin.1 92.66037736 0.880503145 312 2028049 35.56 8636 mgs335100 raw_norm_3m-3 Norway NA NA MG-RAST Porcellato, D., and Skeie, S.B. (2016). Bacterial dynamics and functional analysis of microbial metagenomes during ripening of Dutch-type cheese. Int. Dairy J. 61, 182–188. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PorcellatoD_2016__3m-3_S6__bin.2 80.34875121 1.058201058 310 1388765 39.39 5226 mgs335100 raw_norm_3m-3 Norway NA NA MG-RAST Porcellato, D., and Skeie, S.B. (2016). Bacterial dynamics and functional analysis of microbial metagenomes during ripening of Dutch-type cheese. Int. Dairy J. 61, 182–188. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months PorcellatoD_2016__3m-4_S8__bin.1 94.82929021 1.635220126 278 2036812 35.52 10394 mgs335103 raw_norm_3m-4 Norway NA NA MG-RAST Porcellato, D., and Skeie, S.B. (2016). Bacterial dynamics and functional analysis of microbial metagenomes during ripening of Dutch-type cheese. Int. Dairy J. 61, 182–188. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654081__bin.4 51.20087336 0 28 785823 39.92 63076 ERS654081 ERR752910 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654081__bin.3 62.06896552 0 97 980111 35.9 16529 ERS654081 ERR752910 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654082__bin.8 98.79385965 0 70 2508540 67.39 69929 ERS654082 ERR752911 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654082__bin.2 55.32915361 0.862068966 189 1320992 51.41 9290 ERS654082 ERR752911 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. GCF_006740305.1_ASM674030v1_genomic MAG_466 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654082__bin.4 53.44827586 0 70 683452 36.28 14181 ERS654082 ERR752911 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654083__bin.8 58.66640059 0.145560408 81 905977 40.06 14417 ERS654083 ERR752912 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654083__bin.4 98.79385965 0 75 2494265 67.4 54598 ERS654083 ERR752912 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654083__bin.9 71.36953955 0.297619048 77 893208 51.34 15827 ERS654083 ERR752912 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. GCF_006740305.1_ASM674030v1_genomic MAG_466 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654083__bin.2 50.60507674 0 84 757567 36.06 13632 ERS654083 ERR752912 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654083__bin.3 51.72413793 1.724137931 254 989550 69.32 4854 ERS654083 ERR752912 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. DeFilippisF_xxxx__DF_58__bin.5 QuigleyL_2016__ERS654086__bin.3 Deinococcota;Deinococci;Deinococcales;Thermaceae;Thermus Thermus parvatiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654084__bin.3 68.87190684 0.58224163 58 1155841 39.86 26653 ERS654084 ERR752913 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654084__bin.2 98.79385965 0 77 2446283 67.48 54575 ERS654084 ERR752913 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654084__bin.9 80.66706021 0.297619048 103 1238725 51.34 17406 ERS654084 ERR752913 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. GCF_006740305.1_ASM674030v1_genomic MAG_466 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654085__bin.4 66.99417758 0.145560408 34 1073428 39.97 39999 ERS654085 ERR752914 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654085__bin.2 97.47807018 0 130 2443469 67.47 26708 ERS654085 ERR752914 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654085__bin.6 86.97363243 0.90445269 149 1329596 51.44 11588 ERS654085 ERR752914 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. GCF_006740305.1_ASM674030v1_genomic MAG_466 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654085__bin.9 52.54237288 1.483050847 164 806126 69.27 6983 ERS654085 ERR752914 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. DeFilippisF_xxxx__DF_58__bin.5 QuigleyL_2016__ERR752914__bin.5 Deinococcota;Deinococci;Deinococcales;Thermaceae;Thermus Thermus parvatiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654086__bin.2 96.21249472 1.018922853 92 1634318 39.19 26161 ERS654086 ERR752915 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654086__bin.1 98.79385965 0 76 2517175 67.39 55348 ERS654086 ERR752915 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654086__bin.4 72.75862069 0 163 1193895 51.58 8887 ERS654086 ERR752915 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. GCF_006740305.1_ASM674030v1_genomic MAG_466 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654086__bin.3 51.72413793 0 261 1091291 69.17 5420 ERS654086 ERR752915 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. DeFilippisF_xxxx__DF_58__bin.5 QuigleyL_2016__ERS654086__bin.3 Deinococcota;Deinococci;Deinococcales;Thermaceae;Thermus Thermus parvatiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654087__bin.1 97.70742358 0.58224163 65 1678998 39.16 42675 ERS654087 ERR752916 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654087__bin.2 98.79385965 0 70 2455712 67.47 69795 ERS654087 ERR752916 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654087__bin.4 65 0 166 1328421 51.19 10008 ERS654087 ERR752916 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. GCF_006740305.1_ASM674030v1_genomic MAG_466 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654087__bin.8 55.17241379 0 68 647726 36.29 13929 ERS654087 ERR752916 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654087__bin.5 51.72413793 0 265 1079252 69.06 5405 ERS654087 ERR752916 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. DeFilippisF_xxxx__DF_58__bin.5 QuigleyL_2016__ERS654086__bin.3 Deinococcota;Deinococci;Deinococcales;Thermaceae;Thermus Thermus parvatiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654088__bin.5 78.74575449 0.270326471 107 1268844 39.66 17576 ERS654088 ERR752917 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654088__bin.3 98.79385965 0 89 2536587 67.34 46968 ERS654088 ERR752917 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654088__bin.1 62.06896552 0 101 955599 35.96 14145 ERS654088 ERR752917 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654089__bin.1 94.69432314 0.809679767 159 1479540 39.5 12770 ERS654089 ERR752918 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654089__bin.4 98.79385965 0 78 2521365 67.39 56936 ERS654089 ERR752918 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654089__bin.2 53.44827586 0.862068966 278 1319244 51.24 5649 ERS654089 ERR752918 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. GCF_006740305.1_ASM674030v1_genomic MAG_466 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654089__bin.5 85.72033898 0.847457627 369 1516581 69.05 5106 ERS654089 ERR752918 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. DeFilippisF_xxxx__DF_58__bin.5 MAG_468 Deinococcota;Deinococci;Deinococcales;Thermaceae;Thermus Thermus parvatiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654090__bin.6 72.69104803 0.295279684 152 1102327 39.8 8725 ERS654090 ERR752919 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654090__bin.3 98.79385965 0 76 2464452 67.46 46973 ERS654090 ERR752919 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERS654090__bin.4 86.28492719 0.541125541 113 1444627 50.92 18967 ERS654090 ERR752919 Ireland PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. GCF_006740305.1_ASM674030v1_genomic MAG_466 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuijadaN_2022__ERR7245779__bin.10 89.54 3.76 77 2777129 67.06 63297 SAMEA10773332 ERR7245779 Austria PRJEB48589 ERP132975 NCBI Quijada NM, Dzieciol M, Schmitz-Esser S, Wagner M, Selberherr E. Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening. Front Microbiol. 2022 Mar 1;13:813480. doi: 10.3389/fmicb.2022.813480. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuijadaN_2022__ERR7245779__bin.11 85.82 3.28 181 1850503 36.39 15356 SAMEA10773332 ERR7245779 Austria PRJEB48589 ERP132975 NCBI Quijada NM, Dzieciol M, Schmitz-Esser S, Wagner M, Selberherr E. Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening. Front Microbiol. 2022 Mar 1;13:813480. doi: 10.3389/fmicb.2022.813480. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuijadaN_2022__ERR7245779__bin.12 81.18 0.19 81 2925363 55.32 60923 SAMEA10773332 ERR7245779 Austria PRJEB48589 ERP132975 NCBI Quijada NM, Dzieciol M, Schmitz-Esser S, Wagner M, Selberherr E. Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening. Front Microbiol. 2022 Mar 1;13:813480. doi: 10.3389/fmicb.2022.813480. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuijadaN_2022__ERR7245779__bin.13 87.67 0.15 137 3345876 54.12 43063 SAMEA10773332 ERR7245779 Austria PRJEB48589 ERP132975 NCBI Quijada NM, Dzieciol M, Schmitz-Esser S, Wagner M, Selberherr E. Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening. Front Microbiol. 2022 Mar 1;13:813480. doi: 10.3389/fmicb.2022.813480. MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuijadaN_2022__ERR7245779__bin.15 84.6 3.59 193 2836275 68.65 21890 SAMEA10773332 ERR7245779 Austria PRJEB48589 ERP132975 NCBI Quijada NM, Dzieciol M, Schmitz-Esser S, Wagner M, Selberherr E. Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening. Front Microbiol. 2022 Mar 1;13:813480. doi: 10.3389/fmicb.2022.813480. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuijadaN_2022__ERR7245779__bin.25 99.2 0.03 36 1990241 55.44 80953 SAMEA10773332 ERR7245779 Austria PRJEB48589 ERP132975 NCBI Quijada NM, Dzieciol M, Schmitz-Esser S, Wagner M, Selberherr E. Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening. Front Microbiol. 2022 Mar 1;13:813480. doi: 10.3389/fmicb.2022.813480. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuijadaN_2022__ERR7245779__bin.34 80.9 1.95 217 3047071 63.32 21963 SAMEA10773332 ERR7245779 Austria PRJEB48589 ERP132975 NCBI Quijada NM, Dzieciol M, Schmitz-Esser S, Wagner M, Selberherr E. Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening. Front Microbiol. 2022 Mar 1;13:813480. doi: 10.3389/fmicb.2022.813480. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuijadaN_2022__ERR7245779__bin.39 78.26 1.51 167 2830384 65.75 26320 SAMEA10773332 ERR7245779 Austria PRJEB48589 ERP132975 NCBI Quijada NM, Dzieciol M, Schmitz-Esser S, Wagner M, Selberherr E. Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening. Front Microbiol. 2022 Mar 1;13:813480. doi: 10.3389/fmicb.2022.813480. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 QuijadaN_2022__ERR7245779__bin.39 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuijadaN_2022__ERR7245779__bin.4 77.11 2.88 424 2707828 69.33 9150 SAMEA10773332 ERR7245779 Austria PRJEB48589 ERP132975 NCBI Quijada NM, Dzieciol M, Schmitz-Esser S, Wagner M, Selberherr E. Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening. Front Microbiol. 2022 Mar 1;13:813480. doi: 10.3389/fmicb.2022.813480. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_2__P2570__bin.32 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuijadaN_2022__ERR7245779__bin.40 58.36 0.17 43 1413869 33.29 52100 SAMEA10773332 ERR7245779 Austria PRJEB48589 ERP132975 NCBI Quijada NM, Dzieciol M, Schmitz-Esser S, Wagner M, Selberherr E. Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening. Front Microbiol. 2022 Mar 1;13:813480. doi: 10.3389/fmicb.2022.813480. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuijadaN_2022__ERR7245779__bin.41 68.42 1.96 174 2436677 70.78 20215 SAMEA10773332 ERR7245779 Austria PRJEB48589 ERP132975 NCBI Quijada NM, Dzieciol M, Schmitz-Esser S, Wagner M, Selberherr E. Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening. Front Microbiol. 2022 Mar 1;13:813480. doi: 10.3389/fmicb.2022.813480. MASTER_WP4_FFoQSI_2__VB11-29__bin.23 MASTER_WP4_FFoQSI_2__VB11-29__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp030457675 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuijadaN_2022__ERR7245779__bin.43 86.21 0.04 158 2386053 43.98 21745 SAMEA10773332 ERR7245779 Austria PRJEB48589 ERP132975 NCBI Quijada NM, Dzieciol M, Schmitz-Esser S, Wagner M, Selberherr E. Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening. Front Microbiol. 2022 Mar 1;13:813480. doi: 10.3389/fmicb.2022.813480. Wy5_bin.lin.34 MASTER_WP4_FFoQSI_3__VB07-30__bin.42 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuijadaN_2022__ERR7245779__bin.6 91.21 1.04 129 2374826 55.92 26929 SAMEA10773332 ERR7245779 Austria PRJEB48589 ERP132975 NCBI Quijada NM, Dzieciol M, Schmitz-Esser S, Wagner M, Selberherr E. Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening. Front Microbiol. 2022 Mar 1;13:813480. doi: 10.3389/fmicb.2022.813480. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuijadaN_2022__ERR7245779__bin.8 82.95 0.05 145 2207982 55.73 21015 SAMEA10773332 ERR7245779 Austria PRJEB48589 ERP132975 NCBI Quijada NM, Dzieciol M, Schmitz-Esser S, Wagner M, Selberherr E. Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening. Front Microbiol. 2022 Mar 1;13:813480. doi: 10.3389/fmicb.2022.813480. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuijadaN_2022__ERR7245780__bin.1 96.12 1.82 55 2855734 67.02 84196 SAMEA10773333 ERR7245780 Austria PRJEB48589 ERP132975 NCBI Quijada NM, Dzieciol M, Schmitz-Esser S, Wagner M, Selberherr E. Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening. Front Microbiol. 2022 Mar 1;13:813480. doi: 10.3389/fmicb.2022.813480. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuijadaN_2022__ERR7245780__bin.11 84.86 4.59 190 2950019 68.7 25561 SAMEA10773333 ERR7245780 Austria PRJEB48589 ERP132975 NCBI Quijada NM, Dzieciol M, Schmitz-Esser S, Wagner M, Selberherr E. Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening. Front Microbiol. 2022 Mar 1;13:813480. doi: 10.3389/fmicb.2022.813480. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuijadaN_2022__ERR7245780__bin.14 98.42 0.24 116 4585958 69.16 73580 SAMEA10773333 ERR7245780 Austria PRJEB48589 ERP132975 NCBI Quijada NM, Dzieciol M, Schmitz-Esser S, Wagner M, Selberherr E. Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening. Front Microbiol. 2022 Mar 1;13:813480. doi: 10.3389/fmicb.2022.813480. QuijadaN_2022__ERR7245780__bin.14 QuijadaN_2022__ERR7245780__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuijadaN_2022__ERR7245780__bin.19 99.38 0.97 40 2712992 59.59 92735 SAMEA10773333 ERR7245780 Austria PRJEB48589 ERP132975 NCBI Quijada NM, Dzieciol M, Schmitz-Esser S, Wagner M, Selberherr E. Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening. Front Microbiol. 2022 Mar 1;13:813480. doi: 10.3389/fmicb.2022.813480. MASTER_WP4_FFoQSI_2__VB15-29__bin.12 MASTER_WP4_FFoQSI_2__VB15-29__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Flaviflexus Flaviflexus ciconiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuijadaN_2022__ERR7245780__bin.20 85.22 1.41 165 2899058 70.14 26798 SAMEA10773333 ERR7245780 Austria PRJEB48589 ERP132975 NCBI Quijada NM, Dzieciol M, Schmitz-Esser S, Wagner M, Selberherr E. Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening. Front Microbiol. 2022 Mar 1;13:813480. doi: 10.3389/fmicb.2022.813480. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB13-29__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuijadaN_2022__ERR7245780__bin.22 86.12 0.06 121 2221985 55.71 29235 SAMEA10773333 ERR7245780 Austria PRJEB48589 ERP132975 NCBI Quijada NM, Dzieciol M, Schmitz-Esser S, Wagner M, Selberherr E. Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening. Front Microbiol. 2022 Mar 1;13:813480. doi: 10.3389/fmicb.2022.813480. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuijadaN_2022__ERR7245780__bin.25 93.32 1.71 133 2939751 73.07 37198 SAMEA10773333 ERR7245780 Austria PRJEB48589 ERP132975 NCBI Quijada NM, Dzieciol M, Schmitz-Esser S, Wagner M, Selberherr E. Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening. Front Microbiol. 2022 Mar 1;13:813480. doi: 10.3389/fmicb.2022.813480. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_FFoQSI_1__KM-2D__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuijadaN_2022__ERR7245780__bin.27 91.46 1.26 118 2300518 56.03 30051 SAMEA10773333 ERR7245780 Austria PRJEB48589 ERP132975 NCBI Quijada NM, Dzieciol M, Schmitz-Esser S, Wagner M, Selberherr E. Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening. Front Microbiol. 2022 Mar 1;13:813480. doi: 10.3389/fmicb.2022.813480. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuijadaN_2022__ERR7245780__bin.28 73.07 1.21 219 3108333 65.47 23635 SAMEA10773333 ERR7245780 Austria PRJEB48589 ERP132975 NCBI Quijada NM, Dzieciol M, Schmitz-Esser S, Wagner M, Selberherr E. Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening. Front Microbiol. 2022 Mar 1;13:813480. doi: 10.3389/fmicb.2022.813480. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 QuijadaN_2022__ERR7245779__bin.39 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuijadaN_2022__ERR7245780__bin.39 52.63 0.04 24 1233649 55.04 66709 SAMEA10773333 ERR7245780 Austria PRJEB48589 ERP132975 NCBI Quijada NM, Dzieciol M, Schmitz-Esser S, Wagner M, Selberherr E. Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening. Front Microbiol. 2022 Mar 1;13:813480. doi: 10.3389/fmicb.2022.813480. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuijadaN_2022__ERR7245780__bin.41 77.48 3.28 207 2886870 63.39 20132 SAMEA10773333 ERR7245780 Austria PRJEB48589 ERP132975 NCBI Quijada NM, Dzieciol M, Schmitz-Esser S, Wagner M, Selberherr E. Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening. Front Microbiol. 2022 Mar 1;13:813480. doi: 10.3389/fmicb.2022.813480. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuijadaN_2022__ERR7245780__bin.42 86.26 0.14 87 2353303 32.73 53400 SAMEA10773333 ERR7245780 Austria PRJEB48589 ERP132975 NCBI Quijada NM, Dzieciol M, Schmitz-Esser S, Wagner M, Selberherr E. Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening. Front Microbiol. 2022 Mar 1;13:813480. doi: 10.3389/fmicb.2022.813480. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuijadaN_2022__ERR7245780__bin.5 93.43 3.69 119 2866681 69.24 52352 SAMEA10773333 ERR7245780 Austria PRJEB48589 ERP132975 NCBI Quijada NM, Dzieciol M, Schmitz-Esser S, Wagner M, Selberherr E. Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening. Front Microbiol. 2022 Mar 1;13:813480. doi: 10.3389/fmicb.2022.813480. MASTER_WP4_FFoQSI_3__VB13-29__bin.36 MASTER_WP4_FFoQSI_1__VB-03-M6__bin.10 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium stercoravium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuijadaN_2022__ERR7245780__bin.6 91.61 1.5 111 1894261 36.58 26990 SAMEA10773333 ERR7245780 Austria PRJEB48589 ERP132975 NCBI Quijada NM, Dzieciol M, Schmitz-Esser S, Wagner M, Selberherr E. Metatranscriptomic Analyses Unravel Dynamic Changes in the Microbial and Metabolic Transcriptional Profiles in Artisanal Austrian Hard-Cheeses During Ripening. Front Microbiol. 2022 Mar 1;13:813480. doi: 10.3389/fmicb.2022.813480. MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alkalibacterium Alkalibacterium gilvum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466718__bin.2 77.35849057 1.698113208 181 1756705 35.55 14647 ERS3466718 ERR3340746 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466718__bin.3 100 0 52 1703883 39.26 45124 ERS3466718 ERR3340746 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466719__bin.2 100 0.408805031 105 2489743 34.86 47364 ERS3466719 ERR3340747 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466719__bin.1 63.37748344 1.334537427 568 1527340 36.49 2821 ERS3466719 ERR3340747 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. DeFilippisF_xxxx__DS_2__bin.27 WalshAM_2020__ERS3466719__bin.1 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus koreensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466720__bin.1 95.55188987 1.515151515 157 2232766 34.86 24952 ERS3466720 ERR3340748 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466720__bin.2 56.03448276 0 260 1483629 35.39 7221 ERS3466720 ERR3340748 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466722__bin.3 92.61006289 0.566037736 168 1966000 35.67 14659 ERS3466722 ERR3340751 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466722__bin.2 94.02173913 0.27173913 99 1752489 38.85 27270 ERS3466722 ERR3340751 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. GCF_008632615.1_ASM863261v1_genomic GCF_008632615.1_ASM863261v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus nenjiangensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466723__bin.4 59.95297806 0 140 1498670 34.79 21130 ERS3466723 ERR3340753 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466723__bin.1 77.77777778 0 33 1575568 32.75 66971 ERS3466723 ERR3340753 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466723__bin.5 89.7 0.1 1061 25583585 49 35155 ERS3466723 ERR3340753 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466724__bin.1 77.45559039 0 172 1979835 34.83 19036 ERS3466724 ERR3340754 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466724__bin.6 90.1572327 0.914808462 184 1910167 35.62 12821 ERS3466724 ERR3340754 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466724__bin.2 86.9 0.1 902 24769319 49.02 38798 ERS3466724 ERR3340754 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466725__bin.2 100 0.377358491 50 2459158 34.82 105139 ERS3466725 ERR3340755 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466725__bin.3 82.59579373 1.069868996 228 1322311 39.43 7599 ERS3466725 ERR3340755 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. Wy2_bin.circ.1 MASTER_WP4_UNINA_1__PM002_71775__bin.12 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466725__bin.1 84.19315704 0.649350649 315 1462310 36.75 5762 ERS3466725 ERR3340755 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. FontanaF_2023__SRR20746979__bin.3 WalshAM_2020__ERS3466725__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466726__bin.6 89.99824785 2.075471698 134 2080384 34.85 24327 ERS3466726 ERR3340756 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466726__bin.4 78.73563218 0 184 1849197 35.53 13759 ERS3466726 ERR3340756 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466726__bin.2 50 0 50 678394 35.77 21382 ERS3466726 ERR3340756 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466727__bin.7 55.55555556 0 27 862672 39.38 45279 ERS3466727 ERR3340757 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466727__bin.2 87.94757326 2.633874062 479 3113373 42.9 7888 ERS3466727 ERR3340757 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. 182 MAG_383 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466727__bin.1 85.13926245 1.831501832 241 2270183 48.68 14128 ERS3466727 ERR3340757 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_176 MAG_176 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466728__bin.1 78.9184953 0 220 2167325 34.72 16756 ERS3466728 ERR3340765 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466728__bin.3 88.40289382 1.635220126 283 1919223 35.62 9144 ERS3466728 ERR3340765 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466729__bin.1 68.10344828 0 202 2073203 34.65 19485 ERS3466729 ERR3340769 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466729__bin.2 100 0 58 1738599 39.19 43176 ERS3466729 ERR3340769 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466730__bin.1 100 0 59 1725614 39.24 43176 ERS3466730 ERR3340770 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466731__bin.4 99.24242424 0.378787879 75 2302652 35 56482 ERS3466731 ERR3340773 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466731__bin.5 87.12716339 1.136363636 233 1520134 36.27 9178 ERS3466731 ERR3340773 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466732__bin.1 96.52830189 0.943396226 174 2424702 34.8 26732 ERS3466732 ERR3340774 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466732__bin.2 65.43630697 0.019677292 283 1020595 36.81 4055 ERS3466732 ERR3340774 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. FontanaF_2023__SRR20746979__bin.3 MAG_401 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466733__bin.1 72.36677116 0 155 1890624 34.88 20567 ERS3466733 ERR3340775 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466733__bin.4 78.94191447 0.18922853 114 1360356 39.45 17133 ERS3466733 ERR3340775 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. Wy2_bin.circ.1 MAG_169 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466733__bin.6 60.34482759 0 88 3219323 48.38 54588 ERS3466733 ERR3340775 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. FalardeauJ_2023__SRR20811137__bin.9 MacoriG_2019__CS_R36__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia paralvei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466733__bin.3 84.32744979 3.081761006 135 1750733 39.35 17352 ERS3466733 ERR3340775 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. WalshL_xxxx__V9__bin.2 MASTER_WP4_CSIC_1__P2154_73322__bin.10 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466734__bin.2 95.86388074 2.462121212 208 2249022 34.98 20407 ERS3466734 ERR3340776 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466735__bin.4 78.1138976 0 290 2446802 34.57 14194 ERS3466735 ERR3340777 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466735__bin.1 92.4324136 0.212862319 297 2340835 46.63 11231 ERS3466735 ERR3340777 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466735__bin.2 86.65608919 0.440251572 247 1960832 35.4 12244 ERS3466735 ERR3340777 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466736__bin.1 79.02677719 1.987419422 288 1181701 39.6 4816 ERS3466736 ERR3340778 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. Wy2_bin.circ.1 WalshAM_2020__ERS3466736__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466737__bin.6 82.68115925 3.587754862 440 1924470 34.76 5284 ERS3466737 ERR3340780 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. DeFilippisF_xxxx__DF_100__bin.17 MAG_405 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Marinilactibacillus Marinilactibacillus psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466737__bin.4 98.98989899 0.505050505 35 2919930 46.76 154678 ERS3466737 ERR3340780 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_406 MAG_406 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Idiomarina NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466737__bin.3 72.77440277 0.941204362 854 2910658 39.48 3732 ERS3466737 ERR3340780 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_90 MAG_90 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas sp030408135 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466737__bin.8 95.65373563 0.466954023 98 3743174 62.88 53283 ERS3466737 ERR3340780 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_82 MAG_82 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Cobetia Cobetia amphilecti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466737__bin.1 69.63096275 4.05982906 650 2141422 43.98 3513 ERS3466737 ERR3340780 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. WalshAM_2020__ERS3466737__bin.1 WalshAM_2020__ERS3466737__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter piscatorii B cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466738__bin.4 77.89968652 1.724137931 238 2257778 34.73 18760 ERS3466738 ERR3340782 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_411 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466738__bin.3 89.38555014 4.886792453 470 2381221 35.15 6720 ERS3466738 ERR3340782 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshAM_2020__ERS3466738__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466739__bin.3 97.82608696 0.135869565 102 1742645 42.14 27076 ERS3466739 ERR3340790 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466739__bin.1 93.20754717 0.283018868 49 2341054 34.82 102257 ERS3466739 ERR3340790 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466740__bin.2 65.73557403 0.452898551 338 1249269 41.71 4109 ERS3466740 ERR3340797 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MAG_422 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466740__bin.1 99.24242424 0 88 2251838 35.02 52720 ERS3466740 ERR3340797 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466740__bin.3 98.7654321 3.086419753 92 2823029 44.79 49531 ERS3466740 ERR3340797 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466741__bin.2 86.16503192 1.799242424 143 2235281 34.65 30613 ERS3466741 ERR3340798 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466741__bin.1 82.163009400000007 2.586206897 237 2101874 35.65 12617 ERS3466741 ERR3340798 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466741__bin.3 89.02515723 1.477987421 262 1532200 39.63 7138 ERS3466741 ERR3340798 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. WalshL_xxxx__V9__bin.2 MAG_423 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466742__bin.5 98.09782609 3.260869565 123 1821505 42.11 22605 ERS3466742 ERR3340799 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466742__bin.6 99.11590296 0.691823899 192 2136797 34.99 18971 ERS3466742 ERR3340799 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466742__bin.4 96.70781893 3.549382716 192 2813810 44.98 21965 ERS3466742 ERR3340799 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. FalardeauJ_2023__SRR20811279__bin.3 FontanaF_2023__SRR20746957__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466742__bin.3 76.11111111 0.138888889 50 1822892 32.68 119036 ERS3466742 ERR3340799 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466743__bin.1 88.4057971 1.902173913 162 1579964 42.25 13230 ERS3466743 ERR3340800 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466743__bin.3 88.49056604 0 87 2175527 34.89 53597 ERS3466743 ERR3340800 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466743__bin.2 96.19341564 2.469135802 105 2782664 44.82 41220 ERS3466743 ERR3340800 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. FalardeauJ_2023__SRR20811279__bin.3 FontanaF_2023__SRR20746957__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466743__bin.6 66.46528133 1.308900524 507 1556826 38.39 3382 ERS3466743 ERR3340800 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. GCF_001434295.1_ASM143429v1_genomic WalshAM_2020__ERS3466743__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466743__bin.7 84.74206349 1.096584467 171 4167862 51.81 33332 ERS3466743 ERR3340800 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_426 MAG_426 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Citrobacter Citrobacter freundii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466744__bin.5 61.49425287 0 602 2147154 33.46 3926 ERS3466744 ERR3340802 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. YangC_2021__SRR13259378__bin.4 WalshAM_2020__ERS3466744__bin.5 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466745__bin.5 78.94968553 1.710691824 481 1775342 35.72 4168 ERS3466745 ERR3340803 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MAG_428 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466745__bin.6 87.08566674 4.010989011 375 2549959 48.42 9346 ERS3466745 ERR3340803 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_176 MAG_176 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466746__bin.9 93.66032439 0.58224163 93 1584272 39.38 24790 ERS3466746 ERR3340804 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466746__bin.1 94.53703704 3.148148148 364 3017271 32.84 15082 ERS3466746 ERR3340804 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466746__bin.2 91.94931774 3.703703704 937 3991106 69.53 5083 ERS3466746 ERR3340804 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. WolfeBE_2014__491_Bayley__bin.8 WalshAM_2020__ERS3466746__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466746__bin.5 94.72718254 2.083333333 249 2732072 47.45 15762 ERS3466746 ERR3340804 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MASTER_WP4_CSIC_2__P2584__bin.5 MAG_430 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter celer cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466746__bin.4 88.90503759 0.608701814 684 3840645 55.8 7261 ERS3466746 ERR3340804 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. FontanaF_2023__SRR20746854__bin.2 FontanaF_2023__SRR20746854__bin.2 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter Enterobacter intestinihominis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466747__bin.4 84.02616903 0.600600601 650 2395058 67.73 4160 ERS3466747 ERR3340806 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. FalardeauJ_2023__SRR20811223__bin.4 WalshAM_2020__ERS3466747__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466747__bin.3 99.07938645 2.370689655 83 3520450 54.21 73941 ERS3466747 ERR3340806 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. FalardeauJ_2023__SRR20811293__bin.2 WalshAM_2020__ERS3466789__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella citrativorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466747__bin.1 96.88481841 2.640086207 245 4352288 52.83 28626 ERS3466747 ERR3340806 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MASTER_WP4_TEAGASC_1__TGS04-29__bin.9 MAG_435 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella sp030440445 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466748__bin.4 83.05750351 0 221 1410272 42.32 8091 ERS3466748 ERR3340809 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 WalshAM_2020__ERS3466748__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466748__bin.3 68.99164054 0 367 2292210 34.68 9208 ERS3466748 ERR3340809 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 WalshAM_2020__ERS3466748__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466748__bin.1 95.22118437 1.638636364 237 4336816 48.1 27656 ERS3466748 ERR3340809 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. FalardeauJ_2023__SRR20811137__bin.9 MacoriG_2019__CS_R36__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia paralvei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466749__bin.4 52.5862069 0 640 1912615 42.48 3175 ERS3466749 ERR3340812 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. WalshAM_2020__ERS3466749__bin.4 WalshAM_2020__ERS3466749__bin.4 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio litoralis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466749__bin.7 96.78111588 4.749642346 114 4664814 42.58 65037 ERS3466749 ERR3340812 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_72 MAG_446 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Marinomonadaceae;Marinomonas Marinomonas sp012726345 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466749__bin.1 97.08994709 0.545634921 110 4512994 44.05 67801 ERS3466749 ERR3340812 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MacoriG_2019__CS_R42__bin.6 MacoriG_2019__CS_R42__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio toranzoniae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466750__bin.4 95 0.555555556 211 2637310 32.88 31402 ERS3466750 ERR3340821 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466750__bin.3 90.80841639 0.872093023 337 3959900 63.18 16896 ERS3466750 ERR3340821 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. We6_bin.circ.9 MAG_462 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466750__bin.5 94.14414414 1.163663664 287 3180589 67.48 15396 ERS3466750 ERR3340821 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MASTER_WP4_TEAGASC_1__TGS11-30__bin.13 MASTER_WP4_TEAGASC_1__TGS11-30__bin.13 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466750__bin.1 93.32953009 1.817276549 174 3526969 53.83 32558 ERS3466750 ERR3340821 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. We6_bin.full.31 MacoriG_2019__CS_R7__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466751__bin.5 97.37318841 0 118 1760970 41.98 25293 ERS3466751 ERR3340822 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466751__bin.1 97.86163522 2.389937107 216 2299350 35.13 16369 ERS3466751 ERR3340822 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466751__bin.7 51.74418605 0.11627907 780 1969378 63.35 2553 ERS3466751 ERR3340822 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. We6_bin.circ.9 WalshAM_2020__ERS3466751__bin.7 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466751__bin.10 87.47257542 1.767015707 408 1899283 38.57 5555 ERS3466751 ERR3340822 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466751__bin.6 89.4812362 3.421633554 427 2375999 36.67 7164 ERS3466751 ERR3340822 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. DeFilippisF_xxxx__DS_2__bin.27 DeFilippisF_xxxx__DS_2__bin.27 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus koreensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466751__bin.2 69.49689212 0.644551381 761 3004080 52.19 4459 ERS3466751 ERR3340822 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_426 MAG_426 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Citrobacter Citrobacter freundii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466751__bin.9 97.4 0.1 573 11739163 36.32 34640 ERS3466751 ERR3340822 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466752__bin.2 63.86792453 0.188679245 28 1488690 34.87 144994 ERS3466752 ERR3340750 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466752__bin.1 61.75437358 1.225570927 585 1635596 46.3 2955 ERS3466752 ERR3340750 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. FontanaF_2023__SRR20746951__bin.4 MAG_379 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466753__bin.2 68.96551724 0 173 1682083 35.58 12490 ERS3466753 ERR3340752 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466754__bin.6 60.81504702 1.724137931 382 1305265 34.9 3726 ERS3466754 ERR3340758 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 WalshAM_2020__ERS3466754__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466754__bin.2 82.47126437 2.586206897 163 1911575 35.45 17569 ERS3466754 ERR3340758 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466754__bin.3 71.69512846 0.844155844 198 1234726 36.45 7779 ERS3466754 ERR3340758 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746829__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466755__bin.1 100 0.611966439 67 2410335 34.84 79445 ERS3466755 ERR3340759 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466755__bin.2 52.74294671 0 367 1594122 35.32 5033 ERS3466755 ERR3340759 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466756__bin.4 82.5136612 0 97 1449430 53.14 20388 ERS3466756 ERR3340760 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. FontanaF_2023__SRR20746839__bin.4 MAG_385 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466756__bin.2 50 0 54 619002 36.06 13646 ERS3466756 ERR3340760 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466757__bin.1 99.9245283 0.408805031 67 2462106 34.83 83111 ERS3466757 ERR3340761 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466758__bin.3 100 0.283018868 46 2474169 34.89 116525 ERS3466758 ERR3340762 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466758__bin.5 99.27983539 3.086419753 94 3014007 43.98 51441 ERS3466758 ERR3340762 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. FranciosaI_2021__SRR12227952__bin.4 WalshAM_2020__ERS3466758__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraplantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466758__bin.2 84.80401845 1.086956522 346 1593916 39.83 5601 ERS3466758 ERR3340762 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. DeFilippisF_xxxx__DF_7__bin.8 DeFilippisF_xxxx__DF_7__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus wasatchensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466758__bin.4 93.5903538 2.657068063 212 2154736 38.39 15564 ERS3466758 ERR3340762 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466759__bin.3 71.93534692 0.727802038 258 1232476 39.37 5248 ERS3466759 ERR3340763 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. Wy2_bin.circ.1 WalshAM_2020__ERS3466759__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466760__bin.1 90.08005822 0.145560408 69 1562305 39.01 38727 ERS3466760 ERR3340764 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466760__bin.6 67.64386754 0.448369565 471 1751828 46.78 4012 ERS3466760 ERR3340764 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. FontanaF_2023__SRR20746951__bin.4 WalshAM_2020__ERS3466760__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466760__bin.3 95.52469136 3.703703704 374 2893941 43.93 10685 ERS3466760 ERR3340764 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. FranciosaI_2021__SRR12227952__bin.4 WalshAM_2020__ERS3466758__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraplantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466761__bin.2 55.17241379 0 206 1062379 39.02 6529 ERS3466761 ERR3340766 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. Wy2_bin.circ.1 WalshAM_2020__ERS3466761__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466761__bin.3 100 0 57 1677785 39.29 48973 ERS3466761 ERR3340766 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466763__bin.2 75.66287879 0 25 1735886 34.94 88249 ERS3466763 ERR3340768 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_395 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466764__bin.2 96.21546688 0.789141414 93 2288936 34.82 47277 ERS3466764 ERR3340771 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466764__bin.1 66.3322884 1.724137931 247 1791179 35.32 9504 ERS3466764 ERR3340771 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466765__bin.4 59.74948347 0.378787879 83 1547944 34.78 37784 ERS3466765 ERR3340772 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466765__bin.2 86.22753094 1.06918239 269 1983918 35.39 10683 ERS3466765 ERR3340772 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshAM_2020__ERS3466765__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466765__bin.1 75.38833315 0.06377551 735 3622556 55.9 5715 ERS3466765 ERR3340772 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. We6_bin.full.92 MAG_89 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Serratia Serratia proteamaculans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466766__bin.1 51.43678161 0 252 1501292 34.67 7999 ERS3466766 ERR3340779 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 WalshAM_2020__ERS3466783__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466766__bin.5 54.70906878 0.377358491 105 986551 35.72 12362 ERS3466766 ERR3340779 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466766__bin.2 100 0 52 1715325 39.26 45124 ERS3466766 ERR3340779 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466766__bin.4 53.65782494 1.975308642 305 1462821 45.43 5212 ERS3466766 ERR3340779 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. FalardeauJ_2023__SRR20811279__bin.3 LandisEA_2021__SRS5653391__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466767__bin.2 100 0.315656566 86 2295604 34.92 53102 ERS3466767 ERR3340781 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_395 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466767__bin.1 98.25639426 0.145560408 49 1709359 39 55092 ERS3466767 ERR3340781 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466768__bin.1 100 0.283018868 46 2532861 34.88 144994 ERS3466768 ERR3340783 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466769__bin.1 92.62623486 1.603535354 139 2092820 34.84 26596 ERS3466769 ERR3340784 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466769__bin.2 72.57053292 0.862068966 373 1810924 35.42 5993 ERS3466769 ERR3340784 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MAG_413 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466769__bin.3 100 0 82 1732176 39.23 35316 ERS3466769 ERR3340784 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466770__bin.6 52.32497388 0 158 1439336 34.5 14997 ERS3466770 ERR3340785 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_411 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466770__bin.1 94.44444444 1.527777778 102 2886701 32.72 96285 ERS3466770 ERR3340785 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466770__bin.4 88.95943563 0.705467372 290 1574140 39.42 6670 ERS3466770 ERR3340785 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466771__bin.4 99.41860465 1.453488372 168 4195330 62.25 40156 ERS3466771 ERR3340805 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_619 WalshAM_2020__ERS3466771__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp900169365 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466771__bin.3 98.35271318 0 148 4145312 64.65 41104 ERS3466771 ERR3340805 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. WalshAM_2020__ERS3466771__bin.3 WalshAM_2020__ERS3466771__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745485 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466771__bin.2 95.37366548 0.889679715 583 6247978 68.11 15768 ERS3466771 ERR3340805 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. WalshAM_2020__ERS3466771__bin.2 WalshAM_2020__ERS3466771__bin.2 Actinomycetota;Actinomycetes;Streptomycetales;Streptomycetaceae;Streptomyces NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466772__bin.4 100 0.283018868 49 2510798 34.87 123516 ERS3466772 ERR3340807 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466772__bin.5 73.99267399 0.274725275 36 1962629 45.3 73425 ERS3466772 ERR3340807 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. 180 MacoriG_2019__CS_R32__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter namhaensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466772__bin.3 57.00730954 0.471230159 894 2389037 56.17 2721 ERS3466772 ERR3340807 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. We6_bin.full.92 MAG_56 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Serratia Serratia proteamaculans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466773__bin.2 86.44025157 1.06918239 495 1994773 35.65 4751 ERS3466773 ERR3340808 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_61 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466773__bin.7 94.69200524 0 64 3226645 59.59 82167 ERS3466773 ERR3340808 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_323 MAG_436 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466773__bin.3 98.63363363 1.863738739 278 3767098 39.82 20849 ERS3466773 ERR3340808 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. FalardeauJ_2023__SRR20811282__bin.3 FalardeauJ_2023__SRR20811282__bin.3 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466773__bin.6 93.69198014 0.227066303 158 3311793 40.51 35580 ERS3466773 ERR3340808 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MacoriG_2019__CS_R33__bin.1 MacoriG_2019__CS_R33__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio hibernica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466774__bin.1 92.78687169 2.09077381 186 5082153 55.66 49411 ERS3466774 ERR3340810 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MASTER_WP4_TEAGASC_1__TGS08-29__bin.64 WalshAM_2020__ERS3466774__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Serratia Serratia liquefaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466774__bin.4 94.08914729 4.089147287 736 3708045 62.78 6721 ERS3466774 ERR3340810 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. We6_bin.circ.9 MAG_167 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466774__bin.9 97.92951542 0.925110132 185 2750232 55.58 22075 ERS3466774 ERR3340810 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466774__bin.5 90.65975487 2.16954023 524 3102176 55.03 7645 ERS3466774 ERR3340810 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 WalshAM_2020__ERS3466774__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466774__bin.6 94.74065298 2.595350937 379 4630847 54.83 17742 ERS3466774 ERR3340810 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_440 MAG_440 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Advenella Advenella sp003533245 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466774__bin.2 97.2972973 0 90 3963302 37.69 93807 ERS3466774 ERR3340810 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MacoriG_2019__CS_R4__bin.7 MacoriG_2019__CS_R4__bin.7 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Proteus Proteus hauseri B cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466775__bin.1 99.81060606 0.126262626 69 2238770 34.96 56103 ERS3466775 ERR3340811 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_395 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466775__bin.2 95.17051362 0.390587094 144 1627371 39.17 17754 ERS3466775 ERR3340811 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466776__bin.19 74.16405434 3.761755486 307 1990824 35.01 9350 ERS3466776 ERR3340813 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_395 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466776__bin.18 80.24596579 0.946142649 195 1418119 39.54 10234 ERS3466776 ERR3340813 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466776__bin.7 72.51346801 4.896953405 675 2043577 33.73 3146 ERS3466776 ERR3340813 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. YangC_2021__SRR13259378__bin.4 MAG_50 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466776__bin.17 95.40697674 3.391472868 458 3272800 63.34 9810 ERS3466776 ERR3340813 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. We6_bin.circ.9 WalshAM_2020__ERS3466776__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466776__bin.2 96.91629956 1.615271659 132 2713068 55.65 34262 ERS3466776 ERR3340813 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466776__bin.6 90.32176956 4.109195402 472 3037114 55.33 8556 ERS3466776 ERR3340813 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466776__bin.15 89.11640212 1.920634921 620 3322567 43.54 6738 ERS3466776 ERR3340813 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MASTER_WP4_FFoQSI_1__KM-2G__bin.45 WalshAM_2020__ERS3466776__bin.15 Bacteroidota;Bacteroidia;Sphingobacteriales;Sphingobacteriaceae;Sphingobacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466776__bin.3 77.90097949 1.851851852 605 2050890 68.7 3637 ERS3466776 ERR3340813 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. 160 WalshAM_2020__ERS3466776__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466776__bin.12 89.13355875 1.625457875 485 2967962 41.97 7461 ERS3466776 ERR3340813 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. 181 MAG_7 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466776__bin.13 98.44054581 2.923976608 505 4106198 69.76 11676 ERS3466776 ERR3340813 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. 183 MacoriG_2019__CS_R44__bin.13 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466777__bin.4 94.18604651 3.740310078 412 3255646 63.18 10932 ERS3466777 ERR3340814 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466777__bin.5 72.16051325 0.881057269 439 1824330 55.77 4587 ERS3466777 ERR3340814 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. CM_UNINA_FFOOD__FFOOD_227__bin.5 WalshAM_2020__ERS3466777__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466777__bin.8 94.0503003 0.957207207 191 2747261 67.08 22821 ERS3466777 ERR3340814 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466777__bin.2 61.03641457 0.840336134 429 1388164 59.06 3490 ERS3466777 ERR3340814 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MAG_47 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466778__bin.1 70.61128527 1.724137931 541 2091507 34.93 4505 ERS3466778 ERR3340786 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 WalshAM_2020__ERS3466778__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466778__bin.2 97.95698925 1.92109777 306 2252982 35.53 11135 ERS3466778 ERR3340786 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466778__bin.6 99.47089947 0.546168288 173 1659142 39.42 14314 ERS3466778 ERR3340786 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466778__bin.4 86.33060662 1.318378591 303 1492041 36.85 6222 ERS3466778 ERR3340786 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746874__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466778__bin.3 56.02084023 1.071428571 503 1467733 42.65 3049 ERS3466778 ERR3340786 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. 181 181 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466779__bin.1 76.7816092 0 193 2199943 34.75 19541 ERS3466779 ERR3340787 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466779__bin.2 92.59206578 4.182389937 318 2010167 35.52 8695 ERS3466779 ERR3340787 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466782__bin.2 98.49056604 2.581804481 258 2251703 35.64 13381 ERS3466782 ERR3340791 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466782__bin.1 94.52830189 1.194968553 200 1926291 39.41 13922 ERS3466782 ERR3340791 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466783__bin.3 58.96551724 0 304 1478364 35.18 5752 ERS3466783 ERR3340792 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 WalshAM_2020__ERS3466783__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466783__bin.2 92.71961858 1.710286062 229 1974044 35.72 12423 ERS3466783 ERR3340792 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466783__bin.4 79.62264151 1.028751123 186 1549525 39.52 9863 ERS3466783 ERR3340792 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466784__bin.1 97.46500304 2.213430716 288 2190334 35.56 11298 ERS3466784 ERR3340793 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466784__bin.2 93.39622642 3.018867925 169 1921899 39.33 14480 ERS3466784 ERR3340793 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466785__bin.1 100 0.189393939 73 2177026 35.06 72205 ERS3466785 ERR3340794 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466786__bin.1 100 0.283018868 46 2506872 34.83 121229 ERS3466786 ERR3340795 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466787__bin.2 93.77930246 1.477987421 208 2136298 34.84 21676 ERS3466787 ERR3340796 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466787__bin.4 64.65517241 0 415 1433230 35.79 3898 ERS3466787 ERR3340796 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshAM_2020__ERS3466787__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466787__bin.1 93.43073593 0 181 1605939 36.5 12178 ERS3466787 ERR3340796 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466788__bin.1 65.90909091 0.473484848 61 1736669 34.76 51724 ERS3466788 ERR3340801 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466788__bin.5 77.6123302 0 280 1967932 35.52 10938 ERS3466788 ERR3340801 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466788__bin.2 77.6 0.3 4202 30608052 48.41 9683 ERS3466788 ERR3340801 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MASTER_WP4_UNINA_2__O-30__bin.13 MASTER_WP4_UNINA_2__O-30__bin.13 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium camemberti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466789__bin.3 59.55803116 0.630733945 651 1927540 59.86 3070 ERS3466789 ERR3340815 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_323 MAG_453 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466789__bin.1 98.89194139 0.673076923 284 3299439 41.85 18323 ERS3466789 ERR3340815 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. 181 181 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466789__bin.2 100 0.862068966 107 3590368 54.3 55940 ERS3466789 ERR3340815 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. FalardeauJ_2023__SRR20811293__bin.2 WalshAM_2020__ERS3466789__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella citrativorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466789__bin.9 100 0.515021459 62 4729061 42.51 122754 ERS3466789 ERR3340815 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_72 MAG_72 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Marinomonadaceae;Marinomonas Marinomonas sp012726345 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466790__bin.3 96.22810432 3.847027178 102 3962959 40.35 77681 ERS3466790 ERR3340816 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0160-001_Vibrio_casei_JB196 MAG_454 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466790__bin.1 98.2832618 0.515021459 47 4572929 42.55 147486 ERS3466790 ERR3340816 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_72 MAG_72 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Marinomonadaceae;Marinomonas Marinomonas sp012726345 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466790__bin.7 51.4 0.6 2613 6825060 37 2657 ERS3466790 ERR3340816 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MASTER_WP4_UNINA_1__GO005_71775__bin.6 WalshAM_2020__ERS3466790__bin.7 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466791__bin.1 94.01457559 3.816043487 419 3609504 40.04 12898 ERS3466791 ERR3340817 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. FalardeauJ_2023__SRR20811282__bin.3 MAG_455 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466792__bin.4 77.63951341 0 483 1626928 34.15 3727 ERS3466792 ERR3340818 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. YangC_2021__SRR13259378__bin.4 WalshAM_2020__ERS3466792__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466792__bin.5 85.43604651 3.003875969 425 3050210 63.3 10165 ERS3466792 ERR3340818 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. We6_bin.circ.9 MAG_457 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466792__bin.2 58.6025311 4.504504505 719 1799630 69.18 2534 ERS3466792 ERR3340818 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MASTER_WP4_CSIC_2__P2570__bin.32 WalshAM_2020__ERS3466792__bin.2 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466793__bin.3 66.69278997 3.448275862 572 2159926 35.07 4407 ERS3466793 ERR3340819 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 WalshAM_2020__ERS3466793__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466793__bin.1 93.12169312 0 142 1813425 37.86 19531 ERS3466793 ERR3340819 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466793__bin.6 89.40217391 0 63 2136804 46.61 57555 ERS3466793 ERR3340819 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466793__bin.5 95.83835925 0.754716981 327 2245381 35.32 10435 ERS3466793 ERR3340819 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466793__bin.2 88.55345912 4.088050314 199 1713385 39.67 11901 ERS3466793 ERR3340819 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WalshAM_2020__ERS3466794__bin.1 100 0.189393939 75 2168798 35.08 55843 ERS3466794 ERR3340820 Ireland PRJEB32768 ERP115482 NCBI Walsh, A.M., Macori, G., Kilcawley, K.N., and Cotter, P.D. (2020). Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature Food 1, 500–510. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__282_Bethlehem__bin.3 98.54651163 0.872093023 219 3909995 62.31 35621 mgs113938 282_Bethlehem USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MAG_619 MAG_619 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp900169365 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__282_Bethlehem__bin.4 98.45696791 0.483630952 61 4490579 55.31 110442 mgs113938 282_Bethlehem USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. FontanaF_2023__SRR20746854__bin.2 FontanaF_2023__SRR20746854__bin.2 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter Enterobacter intestinihominis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__316_Langre__bin.1 60.34482759 3.448275862 195 3119483 54.4 23945 mgs113941 316_Langre France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. FalardeauJ_2023__SRR20811293__bin.2 WolfeBE_2014__316_Langre__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella citrativorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__316_Langre__bin.6 97.43243243 0.498310811 209 3633542 39.91 37417 mgs113941 316_Langre France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. FalardeauJ_2023__SRR20811282__bin.3 FalardeauJ_2023__SRR20811282__bin.3 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__316_Langre__bin.4 93.42368992 3.878290538 459 4047571 40.05 13414 mgs113941 316_Langre France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. ODFM-BA-A-0160-001_Vibrio_casei_JB196 ODFM-BA-A-0160-001_Vibrio_casei_JB196 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__319_Tarentaise__bin.6 96.83199748 0.943396226 360 2191889 34.67 8485 mgs113944 319_Tarentaise France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MAG_501 WolfeBE_2014__319_Tarentaise__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__319_Tarentaise__bin.3 95.60077519 0 288 3458706 63.19 23234 mgs113944 319_Tarentaise France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. We6_bin.circ.9 WolfeBE_2014__319_Tarentaise__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__319_Tarentaise__bin.1 99.92150706 1.290636447 92 3314141 42.75 76527 mgs113944 319_Tarentaise France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. 182 WolfeBE_2014__319_Tarentaise__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__322_Camembert__bin.3 94.15204678 1.169590643 227 3277288 70.45 27416 mgs113947 322_Camembert France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__322_Camembert__bin.2 93.98155416 0.467032967 170 2877471 42.95 25859 mgs113947 322_Camembert France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. FalardeauJ_2023__SRR20811274__bin.6 KastmanEK_2016__CSB694__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861365 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__337_Mileens__bin.8 96.72131148 1.548269581 183 2576456 34.94 24768 mgs113950 337_Mileens Ireland NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. DeFilippisF_xxxx__DF_100__bin.17 WolfeBE_2014__337_Mileens__bin.8 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Marinilactibacillus Marinilactibacillus psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__337_Mileens__bin.3 83.60007647 1.671245421 310 2699977 41.77 12940 mgs113950 337_Mileens Ireland NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. 181 181 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__337_Mileens__bin.5 100 1.125478927 186 3532894 54.28 31745 mgs113950 337_Mileens Ireland NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. FalardeauJ_2023__SRR20811293__bin.2 WalshAM_2020__ERS3466789__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella citrativorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__337_Mileens__bin.2 67.86073011 2.766479185 931 2856283 44.19 3326 mgs113950 337_Mileens Ireland NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MacoriG_2019__CS_R42__bin.6 WolfeBE_2014__337_Mileens__bin.2 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio toranzoniae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__340_Comte__bin.3 87.78511992 0.477239354 398 2260365 55.76 7032 mgs113953 340_Comte France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. CM_UNINA_FFOOD__FFOOD_227__bin.5 WolfeBE_2014__340_Comte__bin.3 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__340_Comte__bin.2 90.62378168 1.169590643 279 1888128 55.18 8650 mgs113953 340_Comte France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__340_Comte__bin.7 98.90572391 1.851851852 169 2338754 65.79 27584 mgs113953 340_Comte France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__340_Comte__bin.9 99.0990991 0.675675676 126 2955390 67.57 46180 mgs113953 340_Comte France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. FalardeauJ_2023__SRR20811223__bin.4 FalardeauJ_2023__SRR20811223__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__340_Comte__bin.8 78.20728291 1.680672269 485 1846407 59.04 4233 mgs113953 340_Comte France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 WolfeBE_2014__340_Comte__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__340_Comte__bin.1 86.73547401 2.828746177 130 3374158 65.51 55725 mgs113953 340_Comte France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;CmP2 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__365_Stichelton__bin.4 94.37984496 1.511627907 345 3217917 63.31 13962 mgs113956 365_Stichelton United Kingdom NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. We6_bin.circ.9 KastmanEK_2016__CSB907__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__365_Stichelton__bin.8 96.80564297 2.191091954 281 3230425 55.25 18032 mgs113956 365_Stichelton United Kingdom NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__365_Stichelton__bin.6 89.75225225 0.45045045 81 2879665 66.95 85417 mgs113956 365_Stichelton United Kingdom NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__365_Stichelton__bin.2 88.79562745 0.892857143 236 2898912 42.12 17638 mgs113956 365_Stichelton United Kingdom NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. 181 MAG_626 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__380_Stawley__bin.3 96.60377358 1.132075472 63 2115973 35.75 59139 mgs113959 380_Stawley United Kingdom NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__380_Stawley__bin.1 89.989365 2.543526031 586 3124983 54.03 7150 mgs113959 380_Stawley United Kingdom NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. We6_bin.full.31 WolfeBE_2014__380_Stawley__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__491_Bayley__bin.1 93.11461794 1.259689922 366 3563118 63.18 14793 mgs113962 491_Bayley USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. We6_bin.circ.9 WolfeBE_2014__491_Bayley__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__491_Bayley__bin.8 100 0.584795322 204 3905530 70.37 38894 mgs113962 491_Bayley USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__491_Bayley__bin.6 64.22043011 0.555555556 16 1093512 32.64 117115 mgs113962 491_Bayley USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__491_Bayley__bin.10 51.9 0 1018 7345251 56.2 8843 mgs113962 491_Bayley USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. C-R03.bin.3 WolfeBE_2014__491_Bayley__bin.10 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Scheffersomyces Scheffersomyces stipitis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__575_CabotClothbound__bin.11 100 0.584795322 196 3828605 70.46 37455 mgs113965 575_CabotClothbound USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__575_CabotClothbound__bin.2 99.00662252 0 55 2778353 64.15 119766 mgs113965 575_CabotClothbound USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. WolfeBE_2014__575_CabotClothbound__bin.2 WolfeBE_2014__575_CabotClothbound__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia sp030454085 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__575_CabotClothbound__bin.8 96.25727473 0.220750552 241 2487546 36.52 14935 mgs113965 575_CabotClothbound USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. DeFilippisF_xxxx__DS_2__bin.27 DeFilippisF_xxxx__DS_2__bin.27 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus koreensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__575_CabotClothbound__bin.5 97.56542257 2.181467181 127 3507038 65.65 45935 mgs113965 575_CabotClothbound USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. DeFilippisF_xxxx__DS_2__bin.17 WolfeBE_2014__575_CabotClothbound__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__575_CabotClothbound__bin.3 59.48275862 3.448275862 654 2422403 32.6 4036 mgs113965 575_CabotClothbound USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. YangC_2021__SRR13259377__bin.4 WolfeBE_2014__575_CabotClothbound__bin.3 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__575_CabotClothbound__bin.6 99.12790698 0.581395349 77 4098661 62.56 97013 mgs113965 575_CabotClothbound USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. WolfeBE_2014__575_CabotClothbound__bin.6 WolfeBE_2014__575_CabotClothbound__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__581_Moses_Sleeper__bin.5 76.0784003 1.320754717 501 1627170 34.76 3493 mgs113968 581_Moses_Sleeper USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MAG_501 WolfeBE_2014__581_Moses_Sleeper__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__581_Moses_Sleeper__bin.2 98.69307548 0.145560408 52 1710248 39.04 59087 mgs113968 581_Moses_Sleeper USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__581_Moses_Sleeper__bin.4 95.8 0.2 788 32893362 48.43 78518 mgs113968 581_Moses_Sleeper USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MASTER_WP4_UNINA_2__O-30__bin.13 MASTER_WP4_UNINA_2__O-30__bin.13 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium camemberti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__623_Maggies_Round__bin.6 98.08172177 0.145560408 53 1702619 39.07 60553 mgs113971 623_Maggies_Round USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__623_Maggies_Round__bin.1 99.44444444 1.944444444 19 2795061 32.65 464552 mgs113971 623_Maggies_Round USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__623_Maggies_Round__bin.3 93.8 0.2 1436 33442081 48.4 43772 mgs113971 623_Maggies_Round USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MASTER_WP4_UNINA_2__O-30__bin.13 MASTER_WP4_UNINA_2__O-30__bin.13 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium camemberti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__626_Red_Hawk__bin.5 97.37179487 2.268564769 373 3114004 41.86 11946 mgs113974 626_Red_Hawk USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. 181 WolfeBE_2014__626_Red_Hawk__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__626_Red_Hawk__bin.1 75 0.862068966 41 2937976 54.37 113999 mgs113974 626_Red_Hawk USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. FalardeauJ_2023__SRR20811293__bin.2 158 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella citrativorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__626_Red_Hawk__bin.4 93.93720019 2.989864865 285 3334007 40 19708 mgs113974 626_Red_Hawk USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. FalardeauJ_2023__SRR20811282__bin.3 FalardeauJ_2023__SRR20811282__bin.3 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__626_Red_Hawk__bin.2 55.17241379 1.724137931 858 2658381 40.26 3368 mgs113974 626_Red_Hawk USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. ODFM-BA-A-0160-001_Vibrio_casei_JB196 Wy3_bin.full.20 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__671_Grayson__bin.8 97.61380323 1.923641703 222 2805989 55.64 21767 mgs113977 671_Grayson USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__671_Grayson__bin.14 95.41910331 0.682261209 177 2117486 55.27 18942 mgs113977 671_Grayson USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__671_Grayson__bin.9 90.80814302 1.652298851 539 3161305 55.36 7629 mgs113977 671_Grayson USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 WolfeBE_2014__671_Grayson__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__671_Grayson__bin.13 91.26984127 0.952380952 98 3650731 43.42 70434 mgs113977 671_Grayson USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MASTER_WP4_FFoQSI_1__KM-2G__bin.45 MASTER_WP4_FFoQSI_1__KM-2G__bin.45 Bacteroidota;Bacteroidia;Sphingobacteriales;Sphingobacteriaceae;Sphingobacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__671_Grayson__bin.11 72.70279413 1.421573665 673 2123056 36.54 3423 mgs113977 671_Grayson USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. We4_bin.full.28 WolfeBE_2014__671_Grayson__bin.11 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;Mesonia Mesonia profundi cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__671_Grayson__bin.1 97.40061162 3.344801223 155 3767288 64.86 45373 mgs113977 671_Grayson USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20 MASTER_WP4_FFoQSI_1__VB-08-BD__bin.60 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;CmP2 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__671_Grayson__bin.10 98.40996169 2.17816092 159 3255703 68.8 49475 mgs113977 671_Grayson USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MAG_629 MAG_629 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Xanthomonadaceae;Luteimonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__671_Grayson__bin.5 76.09385322 4.722166633 729 2125031 33.77 3091 mgs113977 671_Grayson USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MASTER_WP4_FFoQSI_1__VB-09-AG__bin.31 WolfeBE_2014__671_Grayson__bin.5 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;Psychroflexus Psychroflexus halocasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__671_Grayson__bin.12 93.60189573 0 25 3790769 56.02 248107 mgs113977 671_Grayson USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MAG_630 MAG_630 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Alcaligenes Alcaligenes aquatilis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__679_Raclette__bin.2 94.86434109 3.294573643 355 3739672 63.2 16426 mgs113980 679_Raclette France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. We6_bin.circ.9 KastmanEK_2016__CSB907__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__679_Raclette__bin.6 99.28429249 1.566091954 127 3650224 55.13 76031 mgs113980 679_Raclette France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__679_Raclette__bin.9 94.09398601 4.29565047 558 3638987 52.91 8398 mgs113980 679_Raclette France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MASTER_WP4_TEAGASC_1__TGS04-29__bin.9 WolfeBE_2014__679_Raclette__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella sp030440445 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__679_Raclette__bin.3 95.38919414 1.488095238 375 2958610 41.96 11840 mgs113980 679_Raclette France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. 181 MAG_643 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__679_Raclette__bin.8 92.32197466 1.29969419 185 3219047 56.65 40434 mgs113980 679_Raclette France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. DeFilippisF_xxxx__DF_114__bin.22 MASTER_WP4_UNINA_1__FO005_71775__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__679_Raclette__bin.7 98.33333333 3.472222222 280 2808431 32.94 14238 mgs113980 679_Raclette France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. YangC_2021__SRR13259377__bin.4 AlvarezOrdonezA_xxxx__Q06-30__bin.11 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__679_Raclette__bin.13 91.67471042 2.421672685 290 3273350 39.79 19485 mgs113980 679_Raclette France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MAG_632 MAG_632 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__679_Raclette__bin.10 91.94952237 1.034482759 66 3451277 54.04 113487 mgs113980 679_Raclette France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. We6_bin.full.31 DeFilippisF_xxxx__DF_85__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__679_Raclette__bin.1 58.10344828 0 573 1918461 54 3511 mgs113980 679_Raclette France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. WolfeBE_2014__679_Raclette__bin.1 WolfeBE_2014__679_Raclette__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__705_Forme_dAmbert__bin.1 85.24082569 1.070336391 207 2755728 66.97 22481 mgs113983 705_Forme_dAmbert France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MASTER_WP4_CSIC_2__P2558__bin.5 MASTER_WP4_CSIC_2__P2558__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Arthrobacter_H Arthrobacter H sp030452125 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__705_Forme_dAmbert__bin.6 75.98186981 3.75764526 501 3002754 64.3 8835 mgs113983 705_Forme_dAmbert France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. YangC_2021__SRR13259376__bin.8 WolfeBE_2014__705_Forme_dAmbert__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Arthrobacter_H Arthrobacter H rhombi A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__705_Forme_dAmbert__bin.4 78.47301535 1.960263835 717 2779464 39.97 4603 mgs113983 705_Forme_dAmbert France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MAG_632 WolfeBE_2014__705_Forme_dAmbert__bin.4 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__711_Garroxta__bin.4 94.86434109 2.054263566 381 3153913 63.08 12350 mgs113986 711_Garroxta Spain NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. We6_bin.circ.9 KastmanEK_2016__CSB870__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__771_Tarentaise__bin.9 93.31395349 0.581395349 299 3295909 63.35 17248 mgs113989 771_Tarentaise USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. We6_bin.circ.9 WolfeBE_2014__771_Tarentaise__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__771_Tarentaise__bin.3 98.5380117 0.584795322 90 4239946 70.27 74530 mgs113989 771_Tarentaise USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. WolfeBE_2014__771_Tarentaise__bin.3 WolfeBE_2014__771_Tarentaise__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium tyrofermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__771_Tarentaise__bin.10 99.91582492 0.673400673 25 2472441 65.59 182250 mgs113989 771_Tarentaise USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_FFoQSI_1__VB-12D__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__771_Tarentaise__bin.5 60.1324008 0.588697017 515 1791843 44.02 3787 mgs113989 771_Tarentaise USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. Wy5_bin.lin.34 WolfeBE_2014__771_Tarentaise__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__771_Tarentaise__bin.2 92.3048048 0.487987988 80 2739066 67.03 62926 mgs113989 771_Tarentaise USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__771_Tarentaise__bin.8 96.99612403 2.228682171 377 3484764 68.57 17388 mgs113989 771_Tarentaise USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__873_Challerhocker__bin.3 93.07992203 1.26705653 245 2102905 55.17 11484 mgs113992 873_Challerhocker Switzerland NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__873_Challerhocker__bin.4 97.25975976 1.516516517 111 2950862 66.99 55786 mgs113992 873_Challerhocker Switzerland NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__873_Challerhocker__bin.1 91.79772827 1.21231979 115 2816142 56.22 61567 mgs113992 873_Challerhocker Switzerland NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__873_Challerhocker__bin.6 87.23506744 4.855491329 742 3136857 68.35 5180 mgs113992 873_Challerhocker Switzerland NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 WolfeBE_2014__873_Challerhocker__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__894_Twig_Tomme__bin.2 99.44444444 0.694444444 108 2661200 33 44567 mgs113995 894_Twig_Tomme USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__894_Twig_Tomme__bin.3 88.62403101 2.441860465 385 3281885 63.46 12674 mgs113995 894_Twig_Tomme USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. We6_bin.circ.9 WolfeBE_2014__894_Twig_Tomme__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__894_Twig_Tomme__bin.1 100 0.877192982 149 3933847 70.38 55020 mgs113995 894_Twig_Tomme USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__894_Twig_Tomme__bin.4 88.15345081 0.760436333 341 2333023 55.69 8296 mgs113995 894_Twig_Tomme USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. CM_UNINA_FFOOD__FFOOD_227__bin.5 WolfeBE_2014__894_Twig_Tomme__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__917_Abondance__bin.4 97.96511628 2.42248062 438 4032475 63.07 16752 mgs113998 917_Abondance France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. We6_bin.circ.9 MAG_449 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__917_Abondance__bin.6 53.83994126 0.440528634 487 1461841 55.54 3164 mgs113998 917_Abondance France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. CM_UNINA_FFOOD__FFOOD_227__bin.5 WolfeBE_2014__917_Abondance__bin.6 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__917_Abondance__bin.7 94.93534483 1.293103448 180 3215606 55.34 36310 mgs113998 917_Abondance France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 MASTER_WP4_FFoQSI_1__VB-14D__bin.48 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__917_Abondance__bin.3 96.86507937 2.142857143 393 3655488 43.45 16091 mgs113998 917_Abondance France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MASTER_WP4_FFoQSI_1__KM-2G__bin.45 MASTER_WP4_FFoQSI_1__KM-2G__bin.45 Bacteroidota;Bacteroidia;Sphingobacteriales;Sphingobacteriaceae;Sphingobacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__917_Abondance__bin.8 92.56756757 0.675675676 104 2727654 67.1 56369 mgs113998 917_Abondance France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__917_Abondance__bin.5 98.39846743 2.056752874 234 3317308 68.66 22561 mgs113998 917_Abondance France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MAG_629 MAG_629 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Xanthomonadaceae;Luteimonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__917_Abondance__bin.1 72.78225108 1.911417121 670 2042882 36.05 3235 mgs113998 917_Abondance France NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.48 WolfeBE_2014__917_Abondance__bin.1 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;Psychroflexus Psychroflexus sp030457805 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__926_Bonne_Buche__bin.2 54.31034483 0 448 1842307 34.39 4855 mgs114001 926_Bonne_Buche USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MAG_501 WolfeBE_2014__926_Bonne_Buche__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__932_Robiola_due_Latte__bin.4 62.28070175 3.50877193 331 5800778 58.19 31204 mgs114004 932_Robiola_due_Latte Italy NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. GCF_900618535.1_TH39_genomic WolfeBE_2014__932_Robiola_due_Latte__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E bubulae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__932_Robiola_due_Latte__bin.8 57.01754386 2.631578947 662 4570159 58.91 9394 mgs114004 932_Robiola_due_Latte Italy NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. WalshL_xxxx__D9__bin.6 WolfeBE_2014__932_Robiola_due_Latte__bin.8 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E helleri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__932_Robiola_due_Latte__bin.1 95.15138909 3.867375948 320 5604407 62.72 33227 mgs114004 932_Robiola_due_Latte Italy NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. WolfeBE_2014__932_Robiola_due_Latte__bin.1 WolfeBE_2014__932_Robiola_due_Latte__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E putida cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__932_Robiola_due_Latte__bin.6 98.36065574 1.37704918 196 5279623 54.71 42785 mgs114004 932_Robiola_due_Latte Italy NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. WolfeBE_2014__932_Robiola_due_Latte__bin.6 WolfeBE_2014__932_Robiola_due_Latte__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Erwinia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__950_Rush_Creek__bin.3 95.04752478 4.163074713 322 3089922 55.45 16349 mgs114007 950_Rush_Creek USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. MASTER_WP4_FFoQSI_1__VB-14D__bin.48 WolfeBE_2014__950_Rush_Creek__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__950_Rush_Creek__bin.5 99.32659933 0.505050505 39 2841905 68.55 198358 mgs114007 950_Rush_Creek USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. 160 WolfeBE_2014__950_Rush_Creek__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__950_Rush_Creek__bin.2 98.02197802 1.176739927 230 3122633 42.04 23420 mgs114007 950_Rush_Creek USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. 181 MAG_643 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months WolfeBE_2014__950_Rush_Creek__bin.1 97.75973836 0.862068966 109 3742101 54.21 59357 mgs114007 950_Rush_Creek USA NA NA MG-RAST Wolfe, B.E., Button, J.E., Santarelli, M., and Dutton, R.J. (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422–433. FalardeauJ_2023__SRR20811293__bin.2 MAG_642 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella citrativorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259372__bin.10 73.54 0.89 38 1843841 32.98 79183 SAMN17047432 SRR13259372 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259372__bin.15 98.68 0.81 120 3421183 64.75 56602 SAMN17047432 SRR13259372 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 YangC_2021__SRR13259372__bin.15 YangC_2021__SRR13259372__bin.15 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Arthrobacter_H NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259372__bin.21 82.88 3.22 348 2843291 32.97 13078 SAMN17047432 SRR13259372 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 ODFM-BA-A-0167-001_Staphylococcus_succinus_BC15 MASTER_WP4_UNINA_1__SR008_71775__bin.14 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus succinus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259372__bin.22 65.01 0.01 24 1556811 32.47 123498 SAMN17047432 SRR13259372 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259372__bin.32 99.95 0.06 77 3673748 63.09 76307 SAMN17047432 SRR13259372 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 We6_bin.circ.9 YangC_2021__SRR13259372__bin.32 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259372__bin.33 78.58 1.24 585 2851952 66.43 6013 SAMN17047432 SRR13259372 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 MASTER_WP4_CSIC_2__P2558__bin.5 YangC_2021__SRR13259372__bin.33 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Arthrobacter_H Arthrobacter H sp030452125 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259372__bin.6 90.58 4.98 624 3838978 70.38 8888 SAMN17047432 SRR13259372 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 WolfeBE_2014__771_Tarentaise__bin.3 YangC_2021__SRR13259372__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium tyrofermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259373__bin.4 99.66 0.14 55 1656942 37.87 68299 SAMN17047433 SRR13259373 Italy PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259373__bin.6 99.98 0.15 109 2163475 35.05 33330 SAMN17047433 SRR13259373 Italy PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259373__bin.8 87.21 0.75 219 2372348 46.89 15459 SAMN17047433 SRR13259373 Italy PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 FontanaF_2023__SRR20746951__bin.4 FalardeauJ_2023__SRR20811272__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259374__bin.1 88.8 0.08 49 2735727 47.96 106739 SAMN17047434 SRR13259374 Greece PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 CM_UNINA_FFOOD__FFOOD_415__bin.4 YangC_2021__SRR13259374__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259374__bin.2 79.43 0.15 66 1273410 51.11 24552 SAMN17047434 SRR13259374 Greece PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_73__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259374__bin.4 89.91 2.12 155 1654172 36.43 15078 SAMN17047434 SRR13259374 Greece PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259374__bin.5 91.31 0.44 108 2514459 46.75 43075 SAMN17047434 SRR13259374 Greece PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 CM_UNINA_FFOOD__FFOOD_337__bin.6 DeFilippisF_xxxx__DF_96__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259375__bin.17 99.98 0.15 136 3756682 63.08 44292 SAMN17047438 SRR13259375 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 We6_bin.circ.9 YangC_2021__SRR13259372__bin.32 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259375__bin.20 85.16 2.89 123 2094502 34.65 28383 SAMN17047438 SRR13259375 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259375__bin.22 81.62 0.13 75 1459153 39.19 21678 SAMN17047438 SRR13259375 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259375__bin.26 82.03 3.67 144 1868769 35.38 16562 SAMN17047438 SRR13259375 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 FontanaF_2023__SRR20746981__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259375__bin.8 91.65 1.62 124 2594456 46.81 28407 SAMN17047438 SRR13259375 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 CM_UNINA_FFOOD__FFOOD_337__bin.6 DeFilippisF_xxxx__DF_96__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259376__bin.11 78.79 0.2 99 1294290 39.75 18236 SAMN17047437 SRR13259376 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 Wy2_bin.circ.1 YangC_2021__SRR13259376__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259376__bin.16 83.46 3.74 439 2743868 60.68 7907 SAMN17047437 SRR13259376 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 YangC_2021__SRR13259376__bin.16 YangC_2021__SRR13259376__bin.16 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia sp004136585 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259376__bin.19 83.64 3.1 68 2337517 46.09 56223 SAMN17047437 SRR13259376 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 DeFilippisF_xxxx__DF_96__bin.15 DeFilippisF_xxxx__DF_96__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parafarraginis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259376__bin.2 100 1.27 36 2460267 34.87 192057 SAMN17047437 SRR13259376 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259376__bin.21 83.79 0.78 152 2226583 46.86 23240 SAMN17047437 SRR13259376 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 FontanaF_2023__SRR20746951__bin.4 CM_UNINA_FFOOD__FFOOD_325__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259376__bin.8 97.76 0.22 238 3193016 64.61 21221 SAMN17047437 SRR13259376 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 YangC_2021__SRR13259376__bin.8 YangC_2021__SRR13259376__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Arthrobacter_H Arthrobacter H rhombi A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259377__bin.10 99.67 0.56 45 2311121 43.78 73871 SAMN17047436 SRR13259377 Greece PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259377__bin.12 99.1 0.39 49 1683333 38.88 57393 SAMN17047436 SRR13259377 Greece PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259377__bin.16 76.76 3.6 390 2230006 48.15 6456 SAMN17047436 SRR13259377 Greece PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 CM_UNINA_FFOOD__FFOOD_415__bin.4 YangC_2021__SRR13259377__bin.16 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259377__bin.3 85.33 3.18 157 1654106 36.69 15250 SAMN17047436 SRR13259377 Greece PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 FontanaF_2023__SRR20746979__bin.3 DuruIC_2018__ERS2061100__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259377__bin.4 100 0.07 65 2750721 33.06 92694 SAMN17047436 SRR13259377 Greece PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 YangC_2021__SRR13259377__bin.4 YangC_2021__SRR13259377__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259377__bin.9 83.01 0.26 90 1455099 50.91 22951 SAMN17047436 SRR13259377 Greece PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 GCF_006740305.1_ASM674030v1_genomic DeFilippisF_xxxx__DF_73__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259378__bin.10 87.13 1.23 327 2248326 42.72 9477 SAMN17047435 SRR13259378 Italy PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 YangC_2021__SRR13259378__bin.10 YangC_2021__SRR13259378__bin.10 Bacillota;Bacilli;Staphylococcales;Salinicoccaceae;Salinicoccus NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259378__bin.22 59.45 2.26 834 2461926 63.75 3120 SAMN17047435 SRR13259378 Italy PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 DeFilippisF_xxxx__DS_90__bin.4 YangC_2021__SRR13259378__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sandarakinum A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259378__bin.4 99.93 0.07 102 2761057 32.9 111202 SAMN17047435 SRR13259378 Italy PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259378__bin.8 55.85 1.09 463 1685983 56.19 3998 SAMN17047435 SRR13259378 Italy PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 YangC_2021__SRR13259378__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259378__bin.9 92.76 0.04 125 2623313 46.54 37032 SAMN17047435 SRR13259378 Italy PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259379__bin.12 95.8 0.13 117 2634429 68.59 38640 SAMN17047431 SRR13259379 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 160 YangC_2021__SRR13259379__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259379__bin.13 85.28 0.19 66 1515346 42.21 36905 SAMN17047431 SRR13259379 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259379__bin.15 78.57 1.36 33 2291844 33.17 191319 SAMN17047431 SRR13259379 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 ODFM-BA-A-0167-001_Staphylococcus_succinus_BC15 MASTER_WP4_UNINA_1__SR008_71775__bin.14 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus succinus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259379__bin.16 99.66 3.72 102 3445949 64.83 61710 SAMN17047431 SRR13259379 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 YangC_2021__SRR13259372__bin.15 YangC_2021__SRR13259372__bin.15 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Arthrobacter_H NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259379__bin.17 86.93 1.9 594 2652691 67.76 5359 SAMN17047431 SRR13259379 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 FalardeauJ_2023__SRR20811223__bin.4 YangC_2021__SRR13259379__bin.17 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259379__bin.18 83.65 0.25 90 1431806 38.09 26352 SAMN17047431 SRR13259379 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_FFoQSI_3__VB09-26__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259379__bin.22 91.15 1.84 125 1945112 39.35 24074 SAMN17047431 SRR13259379 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259379__bin.26 71.24 1.35 212 2735789 70.35 19275 SAMN17047431 SRR13259379 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 WolfeBE_2014__771_Tarentaise__bin.3 YangC_2021__SRR13259379__bin.26 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium tyrofermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259379__bin.3 60.03 0.81 378 1087112 69.04 3038 SAMN17047431 SRR13259379 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 DeFilippisF_xxxx__DF_58__bin.5 YangC_2021__SRR13259379__bin.3 Deinococcota;Deinococci;Deinococcales;Thermaceae;Thermus Thermus parvatiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259379__bin.34 79.51 1.03 111 3033337 63.15 46741 SAMN17047431 SRR13259379 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 We6_bin.circ.9 YangC_2021__SRR13259372__bin.32 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259379__bin.35 75.76 1.64 42 1968097 32.84 79183 SAMN17047431 SRR13259379 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259379__bin.36 89.16 0.32 158 2480517 34.79 30010 SAMN17047431 SRR13259379 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 DeFilippisF_xxxx__DF_100__bin.17 YangC_2021__SRR13259379__bin.36 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Marinilactibacillus Marinilactibacillus psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259379__bin.40 54.95 0.61 55 1289077 35.83 30634 SAMN17047431 SRR13259379 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months YangC_2021__SRR13259379__bin.8 55.24 0.78 327 1061516 36.38 3579 SAMN17047431 SRR13259379 China PRJNA683931 SRP298131 NCBI Yang, C., You, L., Kwok, L.-Y., Jin, H., Peng, J., Zhao, Z., & Sun, Z. (2021). Strain-level multiomics analysis reveals significant variation in cheeses from different regions. LWT - Food Science and Technology, 151, 112043. https://doi.org/10.1016/j.lwt.2021.112043 GCF_012396435.1_ASM1239643v1_genomic YangC_2021__SRR13259379__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella hellenica cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-23__bin.3 71.44723093 0 136 1802120 34.8 18928 ERS17785781 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-23__bin.6 58.73015873 0 37 1120016 39.49 43176 ERS17785781 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-23__bin.2 85.16981132 0.348770726 152 1702528 39.36 14513 ERS17785781 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-24__bin.3 70.87251829 0 154 1957318 34.95 17643 ERS17785782 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-24__bin.4 53.43915344 0 22 804015 39.34 45124 ERS17785782 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-24__bin.7 84.49056604 1.006289308 103 1615624 39.3 20571 ERS17785782 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-25__bin.3 84.87287649 0 142 1882509 34.86 17643 ERS17785783 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-25__bin.5 94.70899471 0 41 1505827 39.22 45898 ERS17785783 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-25__bin.2 83.35849057 0.503144654 92 1701333 39.3 28144 ERS17785783 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-26__bin.3 84.52830189 0.314465409 90 1670227 39.32 28312 ERS17785784 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-27__bin.1 73.14524556 1.724137931 229 2231640 34.39 17479 ERS17785785 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-27__bin.3 83.12842362 1.41509434 231 1774184 35.67 10113 ERS17785785 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-27__bin.2 96.42857143 0.529100529 139 1652208 39.31 15313 ERS17785785 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-28__bin.6 55.48589342 0 145 1035280 35.45 9610 ERS17785786 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_TEAGASC_1__TGS01-28__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-28__bin.4 97.60015117 0.529100529 134 1694501 39.27 19090 ERS17785786 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-28__bin.1 65.38853275 0.534591195 283 1297067 39.32 5243 ERS17785786 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MASTER_WP4_TEAGASC_1__TGS01-28__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-29__bin.1 96.73913043 0.27173913 88 1675523 42.14 30504 ERS17785787 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-29__bin.9 59.48275862 0 181 1963016 34.63 18146 ERS17785787 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-29__bin.5 73.22641509 0.188679245 203 1556801 35.72 10942 ERS17785787 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-29__bin.7 99.36507937 0.176366843 80 1759666 39.19 35451 ERS17785787 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-29__bin.3 97.01646091 2.469135802 117 2003098 38.63 30090 ERS17785787 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967740__bin.10 LeechJ_2020__ERS3967740__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus parvulus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-29__bin.4 87.38541667 0.546875 143 1288995 40.47 11851 ERS17785787 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008033155.1_ASM803315v1_genomic MASTER_WP4_TEAGASC_1__TGS01-22__bin.35 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Secundilactobacillus Secundilactobacillus malefermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-29__bin.2 97.82608696 0 125 2086846 38.12 24853 ERS17785787 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS01-29__bin.2 MASTER_WP4_TEAGASC_1__TGS01-29__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus hokkaidonensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-30__bin.11 77.7173913 0 49 1373519 42.08 40022 ERS17785788 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-30__bin.5 75.49634274 0 196 2036301 34.71 17458 ERS17785788 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-30__bin.7 80.95611285 1.724137931 314 1981777 35.49 8497 ERS17785788 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-30__bin.4 81.48148148 0 32 1232806 39.17 68555 ERS17785788 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-30__bin.2 96.33058985 0.925925926 140 1842751 38.52 19909 ERS17785788 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967740__bin.10 LeechJ_2020__ERS3967740__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus parvulus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-30__bin.10 66.40543365 1.724137931 314 1302050 39.04 4587 ERS17785788 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MASTER_WP4_TEAGASC_1__TGS01-30__bin.10 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-30__bin.9 87.48958333 0.416666667 182 1496801 40.95 11100 ERS17785788 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008033155.1_ASM803315v1_genomic MASTER_WP4_TEAGASC_1__TGS01-22__bin.35 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Secundilactobacillus Secundilactobacillus malefermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-30__bin.6 95.10869565 1.086956522 128 2126732 38.1 24301 ERS17785788 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS01-29__bin.2 MASTER_WP4_TEAGASC_1__TGS01-29__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus hokkaidonensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS01-30__bin.1 98.78821145 0.589005236 75 2226077 38.33 44107 ERS17785788 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS03-23__bin.1 69.0408805 0.377358491 123 1451931 35.05 22105 ERS17785793 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS03-23__bin.4 64.25309393 0.125786164 212 1261995 35.61 7657 ERS17785793 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS03-24__bin.3 57.59433962 0 82 1217025 35.02 21873 ERS17785794 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS03-24__bin.5 95.8 0.1 279 26408887 49.03 148109 ERS17785794 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS03-26__bin.1 95.87644553 1.037735849 201 2021245 35.61 14387 ERS17785796 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS03-26__bin.2 95.8 0.1 190 26474890 49.01 258852 ERS17785796 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS03-26__bin.4 84.4 0.1 1334 10942683 36.14 10548 ERS17785796 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS03-27__bin.5 87.05974843 0.377358491 169 2174751 34.85 21561 ERS17785797 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS03-27__bin.3 85.66037736 0.188679245 260 1747340 35.64 9068 ERS17785797 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS03-27__bin.4 96 0.1 209 26549643 49 226371 ERS17785797 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS03-28__bin.1 71.55731386 0.377358491 203 1334274 35.71 8988 ERS17785798 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS03-28__bin.4 94.9 0.1 177 26256170 49 287849 ERS17785798 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS03-29__bin.2 87.59433962 0.377358491 192 2238443 34.84 21562 ERS17785799 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS03-29__bin.5 83.60062893 0.597484277 309 1701676 35.6 6837 ERS17785799 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS03-29__bin.4 95.7 0.1 187 26598689 48.98 270031 ERS17785799 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium roqueforti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS03-29__bin.1 86.4 0.1 1319 10868525 36.19 10932 ERS17785799 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-23__bin.13 96.44137225 0.841750842 212 1557051 37.94 10806 ERS17785801 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_TEAGASC_1__TGS04-23__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-23__bin.9 65.95930233 2.451550388 830 2274169 63.64 2819 ERS17785801 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_TEAGASC_1__TGS04-23__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-23__bin.22 68.42105263 0 43 1105255 39.13 44982 ERS17785801 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-23__bin.18 86.38346969 2.009300049 466 2378157 55.88 6167 ERS17785801 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 MASTER_WP4_TEAGASC_1__TGS04-28__bin.10 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-23__bin.16 95.87087087 1.351351351 211 2877829 67.81 24754 ERS17785801 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 FalardeauJ_2023__SRR20811223__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-23__bin.30 92.05298013 4.03371463 339 2561859 36.62 10941 ERS17785801 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967702__bin.3 MASTER_WP4_TEAGASC_1__TGS04-23__bin.30 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Kurthia Kurthia gibsonii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-23__bin.31 88.81533645 3.892261585 484 2423868 47.68 6327 ERS17785801 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2584__bin.5 MASTER_WP4_TEAGASC_1__TGS04-23__bin.31 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter celer cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-23__bin.7 67.03761755 2.586206897 817 4188449 38.47 7151 ERS17785801 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB06-21__bin.6 MASTER_WP4_TEAGASC_1__TGS04-23__bin.7 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter guillouiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-23__bin.14 58.8 0 2607 8903426 36.45 3870 ERS17785801 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-26__bin.2 73.77358491 0.377358491 127 1687276 34.99 22124 ERS17785802 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-26__bin.13 56.14035088 0 37 907061 39.07 45124 ERS17785802 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-26__bin.6 72.30960398 2.441077441 486 1781613 65.84 4228 ERS17785802 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_TEAGASC_1__TGS04-29__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-26__bin.10 58.62068966 1.724137931 275 1413312 38.92 6067 ERS17785802 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MASTER_WP4_TEAGASC_1__TGS04-26__bin.10 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-26__bin.12 84.56589707 1.476890113 498 2332968 68.31 5754 ERS17785802 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 160 MASTER_WP4_TEAGASC_1__TGS04-30__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-28__bin.14 87.4127907 1.003599114 694 3363974 63.31 5907 ERS17785804 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_TEAGASC_1__TGS04-28__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-28__bin.10 90.97965177 0.748898678 186 2518477 55.7 21713 ERS17785804 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 MASTER_WP4_TEAGASC_1__TGS04-28__bin.10 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-28__bin.11 96.2962963 0 11 2143592 55.33 243890 ERS17785804 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-28__bin.29 96.88552189 1.363636364 215 2253160 65.77 18537 ERS17785804 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_TEAGASC_1__TGS04-29__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-28__bin.7 60.6557377 0.746224808 135 1883176 35.22 23314 ERS17785804 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.17 MASTER_WP4_TEAGASC_1__TGS04-30__bin.24 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Marinilactibacillus Marinilactibacillus psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-28__bin.27 97.50750751 0.09009009 247 2686996 67.84 19425 ERS17785804 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 FalardeauJ_2023__SRR20811223__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-28__bin.18 92.42757243 1.703296703 394 2513317 47.59 8090 ERS17785804 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2584__bin.5 MASTER_WP4_TEAGASC_1__TGS04-28__bin.18 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter celer cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-28__bin.12 98.7654321 1.01010101 198 2637159 68.66 20872 ERS17785804 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 160 MASTER_WP4_TEAGASC_1__TGS04-30__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-28__bin.15 95.53303303 0.990990991 68 2873534 66.97 81205 ERS17785804 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-28__bin.30 99.4320664 0 82 3360467 59.5 80799 ERS17785804 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_323 MASTER_WP4_TEAGASC_1__TGS04-29__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-28__bin.13 55.63194077 0.136612022 193 1410635 36.57 12420 ERS17785804 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Ruoffia Ruoffia tabacinasalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-28__bin.24 98.8354507 0.862068966 55 4308151 52.85 168498 ERS17785804 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-29__bin.9 MASTER_WP4_TEAGASC_1__TGS04-29__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella sp030440445 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-28__bin.25 97.93771044 2.064293731 125 3721667 67.92 54928 ERS17785804 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-28__bin.25 MASTER_WP4_TEAGASC_1__TGS04-28__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium sp900163665 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-28__bin.26 89.50276243 1.38121547 70 2607550 32.43 85006 ERS17785804 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811284__bin.4 FalardeauJ_2023__SRR20811284__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Mammaliicoccus Mammaliicoccus vitulinus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-28__bin.16 92.38738739 1.621621622 357 3248980 38.95 18057 ERS17785804 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. C-R06.bin.10 C-R06.bin.10 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Proteus Proteus vulgaris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-28__bin.21 74.00029391 4.333898884 775 2892459 42.32 4136 ERS17785804 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-28__bin.21 MASTER_WP4_TEAGASC_1__TGS04-28__bin.21 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio litoralis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-28__bin.22 57.3 0.3 1490 8106526 55.67 6604 ERS17785804 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. C-R03.bin.3 MASTER_WP4_TEAGASC_1__TGS04-28__bin.22 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Scheffersomyces Scheffersomyces stipitis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-28__bin.9 97.3 0.2 455 11728928 36.31 59468 ERS17785804 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-29__bin.5 97.02982349 2.735849057 141 2283702 35.45 27731 ERS17785805 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-29__bin.20 90.19823789 0.837004405 182 2509641 55.61 27738 ERS17785805 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 MASTER_WP4_TEAGASC_1__TGS04-28__bin.10 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-29__bin.17 96.2962963 0 19 2187187 55.37 223786 ERS17785805 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-29__bin.8 98.4006734 0.925925926 95 2477022 65.38 44336 ERS17785805 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_TEAGASC_1__TGS04-29__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-29__bin.14 96.86870421 1.236263736 242 2715737 43.78 16492 ERS17785805 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy5_bin.lin.34 MASTER_WP4_TEAGASC_1__TGS04-29__bin.14 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030457785 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-29__bin.6 96.32132132 1.497747748 295 2692735 67.82 14069 ERS17785805 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 FalardeauJ_2023__SRR20811223__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-29__bin.13 77.23677612 1.923076923 503 2066940 47.74 4639 ERS17785805 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2584__bin.5 MASTER_WP4_TEAGASC_1__TGS04-29__bin.13 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter celer cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-29__bin.22 96.2962963 1.178451178 107 2655604 68.5 38072 ERS17785805 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 160 MASTER_WP4_TEAGASC_1__TGS04-30__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-29__bin.15 97.33483483 0.540540541 75 3014291 67 79533 ERS17785805 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-29__bin.18 99.7378768 0 99 3458085 59.36 71945 ERS17785805 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_323 MASTER_WP4_TEAGASC_1__TGS04-29__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-29__bin.21 96.72131148 3.278688525 275 2095518 36.4 12404 ERS17785805 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Ruoffia Ruoffia tabacinasalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-29__bin.9 99.85632184 0.862068966 70 4371614 52.83 128849 ERS17785805 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-29__bin.9 MASTER_WP4_TEAGASC_1__TGS04-29__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella sp030440445 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-29__bin.1 97.79005525 3.21243985 183 2822736 32.59 30986 ERS17785805 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811284__bin.4 FalardeauJ_2023__SRR20811284__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Mammaliicoccus Mammaliicoccus vitulinus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-29__bin.10 55.09404389 2.586206897 759 2584226 42.2 3680 ERS17785805 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-28__bin.21 MASTER_WP4_TEAGASC_1__TGS04-29__bin.10 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio litoralis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-29__bin.4 54.7 0.5 1294 7803770 56.14 7428 ERS17785805 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. C-R03.bin.3 MASTER_WP4_TEAGASC_1__TGS04-29__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Scheffersomyces Scheffersomyces stipitis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-29__bin.11 98.1 0.1 431 11988267 36.29 64336 ERS17785805 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-30__bin.18 94.19082126 0.289855072 171 2309443 46.7 18558 ERS17785806 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746937__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-30__bin.2 99.47089947 0 80 1712556 39.26 39606 ERS17785806 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-30__bin.14 94.05286344 1.54185022 125 2621374 55.59 32702 ERS17785806 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 MASTER_WP4_TEAGASC_1__TGS04-28__bin.10 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-30__bin.4 96.2962963 0 13 2148188 55.35 223804 ERS17785806 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-30__bin.11 99.41077441 1.430976431 121 2446829 65.48 37645 ERS17785806 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_TEAGASC_1__TGS04-29__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-30__bin.24 95.44626594 1.821493625 216 2477089 34.69 18312 ERS17785806 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.17 MASTER_WP4_TEAGASC_1__TGS04-30__bin.24 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Marinilactibacillus Marinilactibacillus psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-30__bin.5 96.92192192 2.267267267 264 2744868 67.81 17873 ERS17785806 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 FalardeauJ_2023__SRR20811223__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-30__bin.22 99.32659933 1.01010101 61 2695257 68.58 71998 ERS17785806 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 160 MASTER_WP4_TEAGASC_1__TGS04-30__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium gubbeenense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 99.13663664 0.540540541 98 3179761 67.02 66086 ERS17785806 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-30__bin.23 94.60026212 0.688073394 169 3277650 59.46 30079 ERS17785806 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_323 MASTER_WP4_TEAGASC_1__TGS04-29__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-30__bin.6 93.90093425 2.204007286 223 1903050 36.43 13358 ERS17785806 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Ruoffia Ruoffia tabacinasalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS04-30__bin.12 65.51724138 0 616 3002401 53.07 5669 ERS17785806 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-29__bin.9 MASTER_WP4_TEAGASC_1__TGS04-29__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella sp030440445 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS05-27_0__bin.8 52.54730713 0 29 880984 39.26 42162 ERS17785807 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS05-27_0__bin.5 50 0 50 554891 36.35 14488 ERS17785807 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS05-27_0__bin.7 81.21693122 0.037202381 42 3538967 51.07 122362 ERS17785807 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967688__bin.2 MAG_122 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS05-28_0__bin.13 81.21693122 0.037202381 45 3584221 50.99 122362 ERS17785809 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967688__bin.2 MAG_122 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS05-28_0__bin.8 94.54402516 1.103487707 738 6239282 62.54 11424 ERS17785809 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS05-30_0__bin.3 MASTER_WP4_TEAGASC_1__TGS05-30_0__bin.3 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Rhodococcus_F Rhodococcus F qingshengii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS05-28_0__bin.16 83.6 1.7 1521 10162044 38.16 8591 ERS17785809 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MASTER_WP4_TEAGASC_1__TGS05-28_0__bin.16 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS05-29_0__bin.9 95.79739443 0.943396226 508 6450018 62.56 19106 ERS17785810 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS05-30_0__bin.3 MASTER_WP4_TEAGASC_1__TGS05-30_0__bin.3 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Rhodococcus_F Rhodococcus F qingshengii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS05-30_0__bin.13 71.0978836 0.037202381 41 3093591 51.51 119569 ERS17785811 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967688__bin.2 MAG_122 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS05-30_0__bin.3 96.11859838 0.314465409 397 6242484 62.61 25363 ERS17785811 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS05-30_0__bin.3 MASTER_WP4_TEAGASC_1__TGS05-30_0__bin.3 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Rhodococcus_F Rhodococcus F qingshengii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS06-23__bin.8 86.10062893 1.100628931 158 1783886 39.21 15044 ERS17785812 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS06-25__bin.5 51.1509434 0.188679245 132 886956 36.04 8585 ERS17785814 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS06-25__bin.6 99.47089947 0.176366843 63 1672740 39.32 35750 ERS17785814 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS06-25__bin.1 87.09119497 0.880503145 185 1781707 39.22 12759 ERS17785814 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS06-26__bin.4 96.2962963 0 58 1547653 39.45 37502 ERS17785815 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS06-26__bin.1 89.91680961 0.817610063 186 1881235 39.14 13876 ERS17785815 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS06-27__bin.3 77.19435737 0 166 1895463 34.76 17360 ERS17785816 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS06-27__bin.4 82.83018868 1.113207547 117 1683482 39.24 19900 ERS17785816 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS06-28__bin.4 75.47021944 0 136 1634961 34.87 17315 ERS17785817 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS06-28__bin.3 85.97484277 0.817610063 109 1725814 39.25 23816 ERS17785817 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS06-29__bin.7 60.68965517 0 290 1676850 46.51 6569 ERS17785818 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_TEAGASC_1__TGS06-29__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS06-29__bin.6 68.47439916 0 163 1688957 34.8 16857 ERS17785818 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS06-29__bin.3 85.99281222 1.446540881 156 1773719 39.26 17224 ERS17785818 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS06-29__bin.4 93.47826087 0.27173913 125 1933551 38.53 29055 ERS17785818 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008632615.1_ASM863261v1_genomic GCF_008632615.1_ASM863261v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus nenjiangensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS06-30__bin.9 55.98746082 0 157 1607722 34.46 16836 ERS17785819 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS06-30__bin.4 76.47798742 1.257861635 92 1579572 39.23 28397 ERS17785819 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS06-30__bin.7 71.03669939 3.551335586 402 1671419 38.76 4835 ERS17785819 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008632615.1_ASM863261v1_genomic MASTER_WP4_TEAGASC_1__TGS06-30__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus nenjiangensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS07-23__bin.9 59.1954023 1.724137931 335 1156942 35.01 3958 ERS17785820 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_TEAGASC_1__TGS07-23__bin.9 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS07-23__bin.5 77.94010402 1.961858389 177 1786029 35.31 17004 ERS17785820 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS07-23__bin.6 89.359319 1.111111111 427 2598998 32.73 7882 ERS17785820 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_TEAGASC_1__TGS07-23__bin.6 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS07-23__bin.14 91.81944444 0.473484848 170 2283053 43.81 24368 ERS17785820 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS07-23__bin.12 68.96551724 1.724137931 303 1984888 70.17 9131 ERS17785820 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 MASTER_WP4_TEAGASC_1__TGS07-23__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS07-23__bin.13 80.71705426 0.581395349 242 3180792 62.48 20420 ERS17785820 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q03-30__bin.5 AlvarezOrdonezA_xxxx__Q07-30__bin.30 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS07-23__bin.11 86.55945419 1.949317739 758 4209335 69.68 7270 ERS17785820 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS13-29__bin.11 MASTER_WP4_TEAGASC_1__TGS07-23__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014897705 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS07-25__bin.2 92.81663255 0.880503145 166 2142109 35.44 18687 ERS17785822 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS07-25__bin.1 98.88888889 2.222222222 313 2877981 32.53 13197 ERS17785822 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS07-25__bin.9 94.15204678 2.875243665 702 4366962 69.73 8640 ERS17785822 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS13-29__bin.11 MASTER_WP4_TEAGASC_1__TGS13-29__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014897705 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS07-25__bin.6 96.30630631 1.864864865 306 3585962 70.67 18512 ERS17785822 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q07-29__bin.1 AlvarezOrdonezA_xxxx__Q07-29__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Dermatophilaceae;Janibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS07-25__bin.5 99.1375969 1.162790698 124 5096834 62.88 78378 ERS17785822 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS07-25__bin.5 MASTER_WP4_TEAGASC_1__TGS07-25__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS07-27__bin.2 70.78449437 1.603773585 210 1892404 35.07 16467 ERS17785824 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS07-29__bin.2 55.48589342 1.724137931 412 1319299 34.8 3441 ERS17785826 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_TEAGASC_1__TGS07-29__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS07-29__bin.3 65.78369906 0 210 1837776 35.09 16351 ERS17785826 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS07-30__bin.2 62.02194357 0 109 1388123 35.31 18628 ERS17785827 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-23__bin.2 69.23197492 0 153 1908871 34.85 20396 ERS17785828 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-23__bin.6 59.02205342 0.075471698 252 1217178 35.43 6036 ERS17785828 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_TEAGASC_1__TGS08-23__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-23__bin.11 53.96825397 0 43 1055451 39.54 37502 ERS17785828 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-23__bin.13 87.95597484 1.320754717 174 1863362 39.11 16125 ERS17785828 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-24__bin.1 67.71159875 0 151 1952590 34.76 21559 ERS17785829 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-24__bin.6 59.25925926 0 43 1085411 39.58 35623 ERS17785829 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-24__bin.4 82.66666667 0.86163522 145 1776122 39.18 18986 ERS17785829 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-25__bin.7 60.84656085 0.176366843 42 1109988 39.55 37502 ERS17785830 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-25__bin.4 85.47169811 0.691823899 154 1693761 39.37 14338 ERS17785830 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-26__bin.4 68.28631139 0 173 2087184 34.7 21553 ERS17785831 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-26__bin.1 53.60501567 0 202 1092863 35.43 7351 ERS17785831 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_TEAGASC_1__TGS08-23__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-26__bin.2 87.30458221 1.006289308 118 1819979 39.2 20218 ERS17785831 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-27__bin.2 93.28442971 0.505050505 121 1949571 35.01 24883 ERS17785832 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-27__bin.5 65.98746082 0 109 1374731 35.79 17458 ERS17785832 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-28__bin.4 94.08143939 1.830808081 123 2071525 35.07 26064 ERS17785833 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-28__bin.2 53.44827586 0 72 813950 36.03 16206 ERS17785833 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.36 98.36956522 0.27173913 127 1735883 42.22 18342 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_1__P2250_73323__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.23 99.24242424 0 69 2133751 35.11 55635 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.14 97.64492754 0.264190821 75 2877289 46.37 70851 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 LandisEA_2021__SRS5653132__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.64 98.21428571 0.558035714 27 5322763 55.33 257331 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS08-29__bin.64 MASTER_WP4_TEAGASC_1__TGS08-29__bin.64 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Serratia Serratia liquefaciens cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.16 82.32407407 0.017921147 459 1789168 32.95 4391 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.69 80.36821705 1.220930233 407 2430421 63.38 7586 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 KastmanEK_2016__CSB907__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.28 91.3377193 0 154 2469005 67.36 24238 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.61 96.19565217 1.630434783 207 2629011 43.02 15780 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 MASTER_WP4_TEAGASC_1__TGS08-29__bin.61 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.55 77.48538012 2.729044834 486 2880601 70.44 8955 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__771_Tarentaise__bin.3 MASTER_WP4_TEAGASC_1__TGS08-29__bin.55 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium tyrofermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.11 77.31277533 0.587371512 24 1947118 55.38 119853 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.60 94.54191033 0 18 2220192 55.35 311943 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.52 77.72486772 1.587301587 474 2951845 43.87 7347 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2G__bin.45 MASTER_WP4_TEAGASC_1__TGS08-29__bin.52 Bacteroidota;Bacteroidia;Sphingobacteriales;Sphingobacteriaceae;Sphingobacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.62 95.56797865 2.641165756 195 2492519 34.68 20008 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.17 MASTER_WP4_TEAGASC_1__TGS08-29__bin.62 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Marinilactibacillus Marinilactibacillus psychrotolerans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.21 95.72072072 1.02960103 132 3093004 69.17 43851 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_2__P2570__bin.32 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.19 53.15958816 1.951951952 664 1895102 67.83 2989 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 MASTER_WP4_TEAGASC_1__TGS08-29__bin.19 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.45 99.27916121 0.458715596 45 3516978 59.4 133118 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_323 MASTER_WP4_TEAGASC_1__TGS08-29__bin.45 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.24 97.03947368 0.909961686 149 4087421 52.94 38462 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-29__bin.9 MASTER_WP4_TEAGASC_1__TGS04-29__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella sp030440445 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.22 76.61311788 1.73992674 344 2356475 43.17 8837 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 182 MASTER_WP4_TEAGASC_1__TGS08-29__bin.22 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.65 88.33870088 4.694868623 541 3732338 53.56 8435 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF84__bin.30 MASTER_WP4_TEAGASC_1__TGS08-29__bin.65 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Lelliottia Lelliottia amnigena cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.1 90.38007864 0.726299694 162 3288659 56.62 29272 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_114__bin.22 MASTER_WP4_TEAGASC_1__TGS08-29__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.67 79.47775593 0.753604194 281 2112346 56.09 8839 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_TEAGASC_1__TGS08-29__bin.67 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.68 96.89922481 1.501937984 264 3367805 68.75 20068 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_TEAGASC_1__TGS08-29__bin.68 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.39 91.80555556 1.666666667 416 3067070 72.62 10719 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.24 MASTER_WP4_TEAGASC_1__TGS08-29__bin.39 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;JB111 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.31 95.73643411 3.294573643 474 4776489 68.94 19546 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245780__bin.14 MASTER_WP4_TEAGASC_1__TGS08-29__bin.31 Actinomycetota;Actinomycetes;Actinomycetales;Beutenbergiaceae;Ruania NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.48 98.34254144 1.104972376 64 2532561 32.42 114443 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811284__bin.4 FalardeauJ_2023__SRR20811284__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Mammaliicoccus Mammaliicoccus vitulinus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.73 95.73310623 2.036849222 427 4723199 54.84 14536 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS11-22__bin.20 MASTER_WP4_TEAGASC_1__TGS08-29__bin.73 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella titanicae cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.40 54.56950457 0.925925926 350 1409106 67.61 4702 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-BG__bin.13 MASTER_WP4_TEAGASC_1__TGS08-29__bin.40 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.37 97.63379205 1.490825688 171 3408972 69.06 34207 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2588__bin.45 MASTER_WP4_CSIC_1__P2247_73323__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Citricoccus Citricoccus nitrophenolicus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.26 77.39463602 1.436781609 138 1628793 40.83 21359 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2247_73323__bin.3 MASTER_WP4_CSIC_1__P2247_73323__bin.3 Bacillota;Bacilli;Staphylococcales;Salinicoccaceae;Jeotgalicoccus Jeotgalicoccus sp947631305 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.46 91.6 0 1763 27555280 48.69 21407 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS08-29__bin.46 MASTER_WP4_TEAGASC_1__TGS08-29__bin.46 Ascomycota;Sordariomycetes;Hypocreales;Nectriaceae;unknown unknown cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-29__bin.32 97.9 0.2 176 11609315 36.3 130278 ERS17785834 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-30__bin.6 82.1969697 0.189393939 54 1669395 35.17 50304 ERS17785835 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-30__bin.12 97.66666667 1.990740741 214 2551551 32.86 27030 ERS17785835 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-30__bin.7 69.49473976 0.581395349 400 2118805 63.58 6370 ERS17785835 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 KastmanEK_2016__CSB907__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-30__bin.14 83.05068226 4.434697856 662 3172883 70.52 5996 ERS17785835 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__771_Tarentaise__bin.3 MASTER_WP4_TEAGASC_1__TGS08-29__bin.55 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium tyrofermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-30__bin.15 91.81738751 1.162079511 113 3218950 59.75 41913 ERS17785835 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_323 MASTER_WP4_TEAGASC_1__TGS08-29__bin.45 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter arilaitensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-30__bin.4 53.07170543 0.872093023 667 2098007 69.05 3368 ERS17785835 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_TEAGASC_1__TGS08-30__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-30__bin.2 68.44827586 3.448275862 548 4473409 62.22 12331 ERS17785835 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q03-30__bin.5 MASTER_WP4_TEAGASC_1__TGS08-30__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS08-30__bin.11 89.31444187 1.104972376 394 2413313 32.08 7916 ERS17785835 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811284__bin.4 FalardeauJ_2023__SRR20811284__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Mammaliicoccus Mammaliicoccus vitulinus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS09-23__bin.4 54.78056426 0 87 1077271 35.65 21387 ERS17785836 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS09-23__bin.2 64.88916516 1.263704593 889 3236007 60.83 4069 ERS17785836 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS09-25__bin.2 MASTER_WP4_TEAGASC_1__TGS09-25__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E azotoformans A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS09-24__bin.1 96.60377358 0.283018868 35 2303759 34.88 144993 ERS17785837 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS09-24__bin.3 95.6 0.3 764 32641981 48.45 79171 ERS17785837 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__O-30__bin.13 MASTER_WP4_UNINA_2__O-30__bin.13 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium camemberti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS09-25__bin.7 69.52830189 0 22 1506710 34.91 144994 ERS17785838 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS09-25__bin.4 59.95297806 0 90 1205801 35.79 22376 ERS17785838 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS09-25__bin.2 96.69770296 0.774456522 591 5840741 60.92 20152 ERS17785838 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS09-25__bin.2 MASTER_WP4_TEAGASC_1__TGS09-25__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E azotoformans A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS09-26__bin.4 99.62264151 0.283018868 43 2462110 34.82 144993 ERS17785839 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS09-26__bin.5 58.07210031 0 821 2944692 60.88 4182 ERS17785839 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS09-25__bin.2 MASTER_WP4_TEAGASC_1__TGS09-26__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E azotoformans A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS09-26__bin.6 96.3 0.3 704 32843159 48.44 85664 ERS17785839 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__O-30__bin.13 MASTER_WP4_UNINA_2__O-30__bin.13 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium camemberti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS09-27__bin.1 57.71159875 0 61 1249914 34.89 30862 ERS17785840 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS09-28__bin.2 68.57366771 0 157 1499889 35.62 12212 ERS17785841 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS10-23__bin.9 57.09606987 0 25 911638 39.57 55092 ERS17785843 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS10-24__bin.11 62.91013584 1.175548589 357 1282038 35.13 4143 ERS17785844 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_TEAGASC_1__TGS10-24__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS10-24__bin.6 52.43813683 0 23 834494 39.61 59154 ERS17785844 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS10-24__bin.10 52.84090909 0 85 933402 36.55 16055 ERS17785844 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746922__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS10-26__bin.13 58.72634643 0 27 976077 39.41 59154 ERS17785846 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS10-26__bin.10 53.44827586 0 59 784736 35.91 20117 ERS17785846 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 MASTER_WP4_TEAGASC_1__TGS10-26__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS10-27__bin.7 62.12643678 0 328 1311144 34.97 4768 ERS17785847 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_TEAGASC_1__TGS10-27__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS10-27__bin.8 90.09545708 0.386008919 272 2237043 47 10243 ERS17785847 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_TEAGASC_1__TGS10-27__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS10-27__bin.1 78.05331157 3.673854447 188 2000596 35.32 18183 ERS17785847 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS10-27__bin.5 96.79199401 3.672839506 160 2711853 45.06 24638 ERS17785847 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FontanaF_2023__SRR20746957__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS10-28__bin.1 83.71577381 0 215 1981281 46.36 11218 ERS17785848 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 DeFilippisF_xxxx__DS_50__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS10-28__bin.4 59.54022989 0 309 1249712 35.08 4840 ERS17785848 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_TEAGASC_1__TGS10-28__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS10-28__bin.6 94.49478043 2.264150943 225 2459576 35.24 18329 ERS17785848 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS10-28__bin.5 57.9153605 3.448275862 242 2355349 45.12 13285 ERS17785848 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FontanaF_2023__SRR20746957__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS10-28__bin.2 99.0625 0.625 17 2321463 42.52 209257 ERS17785848 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS10-28__bin.13 94.29347826 1.358695652 141 2401689 43.12 27819 ERS17785848 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 MASTER_WP4_TEAGASC_1__TGS10-28__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS10-28__bin.7 63.08777429 1.724137931 217 2609703 44.03 17773 ERS17785848 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FranciosaI_2021__SRR12227952__bin.4 WalshAM_2020__ERS3466758__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraplantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS10-29__bin.7 75.60767261 1.704545455 344 1304875 35.21 4334 ERS17785849 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_TEAGASC_1__TGS10-29__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS10-29__bin.4 98.4375 0.625 38 2305557 42.53 149878 ERS17785849 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS10-30__bin.9 65.70014881 0 344 1455929 46.6 4733 ERS17785850 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_TEAGASC_1__TGS10-30__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS10-30__bin.4 69.49320794 0 354 1403560 34.83 4636 ERS17785850 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_TEAGASC_1__TGS10-30__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS10-30__bin.1 64.69432314 0.145560408 34 1185958 39.14 59154 ERS17785850 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS10-30__bin.5 93.1567029 1.596541013 410 2240466 46.94 7150 ERS17785850 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_TEAGASC_1__TGS10-30__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS10-30__bin.3 92.83318578 3.314059647 245 2580809 35.33 18183 ERS17785850 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS10-30__bin.12 77.29166667 0.9765625 19 734987 42.11 66568 ERS17785850 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS10-30__bin.6 97.3359375 0.9375 57 2349409 43.75 72167 ERS17785850 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 MASTER_WP4_UNINA_1__MO005_73417__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS10-30__bin.7 52.86468294 0.679347826 380 1286020 43.07 3696 ERS17785850 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 MASTER_WP4_TEAGASC_1__TGS10-28__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS11-23__bin.6 55.64263323 1.724137931 112 1163959 35.18 14632 ERS17785851 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS11-26__bin.4 82.97255147 0.145560408 43 1460380 39.15 55092 ERS17785855 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS11-26__bin.8 54.31034483 0 187 1432963 35.29 11367 ERS17785855 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS11-27__bin.4 86.90996049 0.145560408 36 1504511 39.21 59154 ERS17785856 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS11-27__bin.5 66.84952978 0 138 1397012 35.64 17004 ERS17785856 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS11-28__bin.2 93.89686005 0.145560408 42 1593193 39.12 59154 ERS17785857 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS11-29__bin.1 85.59991682 0.145560408 37 1471898 39.18 62841 ERS17785858 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS11-30__bin.9 91.71345394 0.145560408 43 1578711 39.18 59154 ERS17785859 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS11-30__bin.7 83.10606061 0.943396226 139 1939513 35.44 20691 ERS17785859 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS11-30__bin.6 99.30555556 0.138888889 170 2739122 32.7 30394 ERS17785859 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS11-30__bin.10 91.56976744 2.906976744 369 3223169 63.37 12435 ERS17785859 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_TEAGASC_1__TGS11-30__bin.10 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS11-30__bin.11 98.73294347 1.169590643 264 3997339 70.28 26659 ERS17785859 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS11-30__bin.13 99.32432432 0.675675676 57 3318951 67.57 84724 ERS17785859 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS11-30__bin.13 MASTER_WP4_TEAGASC_1__TGS11-30__bin.13 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS12-23__bin.5 68.57366771 0 120 1484258 35.7 15641 ERS17785860 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS12-25__bin.6 74.60815047 0 154 1688743 35.61 14576 ERS17785862 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS12-26__bin.2 59.55345912 0 67 1106843 35.28 23349 ERS17785863 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS12-26__bin.4 54.65517241 0 115 1416545 35.74 15528 ERS17785863 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS12-27__bin.1 99.62264151 0.283018868 60 2417122 34.87 96875 ERS17785864 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS12-28__bin.6 85.0410544 1.289308176 248 2051932 35.26 13259 ERS17785865 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS12-29__bin.4 78.81959379 1.175925926 416 1917196 32.89 5481 ERS17785866 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS12-29__bin.16 71.72757475 1.744186047 336 2233879 63.4 8719 ERS17785866 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_TEAGASC_1__TGS12-29__bin.16 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS12-29__bin.5 98.67549669 1.986754967 166 2730936 35.3 32681 ERS17785866 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 MASTER_WP4_TEAGASC_1__TGS12-29__bin.5 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS12-29__bin.1 82.56578947 0 91 1645630 67.39 26768 ERS17785866 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS12-29__bin.8 93.01801802 0.472972973 48 2279697 68.4 98864 ERS17785866 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_TEAGASC_1__TGS12-29__bin.8 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS12-29__bin.10 96.42210145 0 86 1866350 41.12 30925 ERS17785866 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 MASTER_WP4_TEAGASC_1__TGS12-29__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS12-29__bin.6 99.62546816 0 108 2401667 38.28 33272 ERS17785866 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS12-29__bin.6 MASTER_WP4_TEAGASC_1__TGS12-29__bin.6 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B faecium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS12-29__bin.18 79.76744186 3.972868217 400 2546566 69.2 9060 ERS17785866 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_TEAGASC_1__TGS12-29__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS12-29__bin.36 88.27160494 3.102453102 412 2584311 67.71 9168 ERS17785866 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-BG__bin.13 MASTER_WP4_TEAGASC_1__TGS12-29__bin.36 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS12-29__bin.35 95 1.470588235 263 3250957 66.95 18536 ERS17785866 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS12-29__bin.35 MASTER_WP4_TEAGASC_1__TGS12-29__bin.35 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Dietzia NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS12-29__bin.20 80.74306646 0.274725275 1175 5282768 69.31 5514 ERS17785866 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-2D__bin.28 MASTER_WP4_TEAGASC_1__TGS12-29__bin.20 Actinomycetota;Actinomycetes;Streptosporangiales;Streptosporangiaceae;Nocardiopsis Nocardiopsis sp900143625 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS12-29__bin.14 92.45570321 1.889534884 313 2978059 67.5 13707 ERS17785866 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS12-29__bin.14 MASTER_WP4_TEAGASC_1__TGS12-29__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS12-30__bin.1 77.3989899 1.041666667 42 2024408 34.69 142845 ERS17785867 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS12-30__bin.5 51.27062106 0.752062106 136 864668 39.04 8696 ERS17785867 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS13-23__bin.4 56.60377358 0 37 1363838 34.86 71757 ERS17785868 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS13-24__bin.3 66.79245283 0.377358491 34 1595199 34.99 82149 ERS17785869 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS13-25__bin.8 74.71698113 0 44 1784728 34.96 71757 ERS17785870 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS13-26__bin.6 79.90566038 0.377358491 62 1963708 34.95 71757 ERS17785871 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS13-27__bin.6 95.09433962 0.754716981 171 2222005 34.99 21601 ERS17785872 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS13-27__bin.1 100 0.529100529 36 2055519 37.45 167130 ERS17785872 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS13-27__bin.5 59.67516943 0.19650655 180 856300 39.6 5156 ERS17785872 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS13-27__bin.4 91.88311688 0 133 1581164 36.58 19301 ERS17785872 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS13-27__bin.3 95.06782946 2.810077519 345 4343492 62.36 19896 ERS17785872 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_619 MASTER_WP4_TEAGASC_1__TGS13-29__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp900169365 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS13-28__bin.6 90.44025157 0.289471535 98 2019419 35.03 28943 ERS17785873 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS13-28__bin.3 100 1.058201058 23 2009805 37.61 207800 ERS17785873 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS13-28__bin.5 56.89655172 1.724137931 103 1046201 35.88 17409 ERS17785873 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS13-29__bin.1 58.95924309 0.37845706 46 938683 40.04 33284 ERS17785874 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS13-29__bin.2 99.44444444 0.694444444 23 2798674 32.94 327404 ERS17785874 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS13-29__bin.10 57.5055371 0 293 1980660 63.51 7948 ERS17785874 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_TEAGASC_1__TGS13-29__bin.10 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS13-29__bin.4 98.44054581 3.918128655 414 3622593 70.48 13927 ERS17785874 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS13-29__bin.3 94.37292359 0.581395349 183 3930792 62.56 34093 ERS17785874 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_619 MASTER_WP4_TEAGASC_1__TGS13-29__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp900169365 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS13-29__bin.11 98.05068226 0.555555556 201 5048494 69.38 40257 ERS17785874 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS13-29__bin.11 MASTER_WP4_TEAGASC_1__TGS13-29__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014897705 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS13-29__bin.8 62.93103448 1.724137931 718 3491498 64.89 5731 ERS17785874 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2020__ERS3466771__bin.3 MASTER_WP4_TEAGASC_1__TGS13-29__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745485 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS13-30__bin.4 63.24146929 0.123726346 137 942223 39.69 7183 ERS17785875 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 MASTER_WP4_TEAGASC_1__TGS13-30__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS13-30__bin.5 51.72413793 0 418 1823541 33.17 4911 ERS17785875 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_TEAGASC_1__TGS13-30__bin.5 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS13-30__bin.10 98.83040936 0.682261209 172 3795552 70.39 33603 ERS17785875 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS13-30__bin.7 62.38244514 1.724137931 816 3344481 70.47 4726 ERS17785875 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__771_Tarentaise__bin.3 MASTER_WP4_TEAGASC_1__TGS13-30__bin.7 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium tyrofermentans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS13-30__bin.8 75.22840532 0.581395349 267 3113666 62.7 19471 ERS17785875 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_619 MASTER_WP4_TEAGASC_1__TGS13-29__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp900169365 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS13-30__bin.9 93.02325581 1.220930233 315 4367188 64.34 21202 ERS17785875 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2020__ERS3466771__bin.3 WalshAM_2020__ERS3466771__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745485 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS13-30__bin.2 87.18121347 1.059626437 463 4168559 59.98 11197 ERS17785875 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS13-30__bin.2 MASTER_WP4_TEAGASC_1__TGS13-30__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Halomonas Halomonas cupida cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS14-27__bin.3 78.16091954 1.724137931 169 1933142 34.75 17171 ERS17785880 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS14-27__bin.4 98.11320755 1.06918239 92 2276442 35.58 63333 ERS17785880 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS14-27__bin.1 96.18320611 1.463104326 84 1918932 36.22 44306 ERS17785880 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS14-28__bin.1 MASTER_WP4_TEAGASC_1__TGS14-28__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus uberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS14-28__bin.3 99.62264151 0.377358491 71 2248434 34.99 56934 ERS17785881 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS14-28__bin.6 98.14814815 2.777777778 49 3010426 44.74 95176 ERS17785881 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 AlvarezOrdonezA_xxxx__Q06-27__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS14-28__bin.5 63.96103896 0.092764378 95 1170694 36.85 18898 ERS17785881 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746922__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS14-28__bin.1 100 0 16 1912869 36.23 254989 ERS17785881 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS14-28__bin.1 MASTER_WP4_TEAGASC_1__TGS14-28__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus uberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS14-28__bin.4 80.31775103 2.538185085 421 1684258 38.68 4674 ERS17785881 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS14-28__bin.4 MASTER_WP4_TEAGASC_1__TGS14-28__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A paracarnosus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS14-29__bin.7 90.26171637 0.377358491 81 2134082 35.62 55229 ERS17785882 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS14-29__bin.8 94.73566308 0.777777778 443 2829420 32.59 8394 ERS17785882 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_TEAGASC_1__TGS14-29__bin.8 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS14-29__bin.2 98.8 0.1 222 11820988 36.29 127372 ERS17785882 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS14-30__bin.39 69.43396226 0.188679245 49 1400614 35.22 39446 ERS17785883 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS14-30__bin.10 58.67534457 0.760869565 488 1435355 47.08 3115 ERS17785883 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_TEAGASC_1__TGS14-30__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS14-30__bin.11 99.38271605 2.777777778 52 3032793 44.79 88781 ERS17785883 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 AlvarezOrdonezA_xxxx__Q06-27__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS14-30__bin.18 78.77906977 0.290697674 455 2535610 63.37 7401 ERS17785883 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_TEAGASC_1__TGS14-22__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS14-30__bin.23 50 0 77 953032 35.97 20117 ERS17785883 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 MASTER_WP4_TEAGASC_1__TGS10-26__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS14-30__bin.24 94.93177388 3.216374269 557 3379591 70.49 9146 ERS17785883 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS14-30__bin.35 91.13231552 2.655852417 208 1882502 36.32 15495 ERS17785883 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS14-28__bin.1 MASTER_WP4_TEAGASC_1__TGS14-28__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus uberis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS14-30__bin.38 99.32432432 1.332582583 89 3345758 67.55 66919 ERS17785883 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS11-30__bin.13 MASTER_WP4_TEAGASC_1__TGS11-30__bin.13 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS14-30__bin.26 65.31561462 3.730620155 547 4294140 62.19 11535 ERS17785883 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_619 MASTER_WP4_TEAGASC_1__TGS14-30__bin.26 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp900169365 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS14-30__bin.33 86.2972973 2.972972973 930 3324837 70.37 4472 ERS17785883 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS14-30__bin.33 MASTER_WP4_TEAGASC_1__TGS14-30__bin.33 Actinomycetota;Actinomycetes;Actinomycetales;Dermatophilaceae;Janibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS14-30__bin.13 94 0.2 1907 32287891 48.53 27926 ERS17785883 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__O-30__bin.13 MASTER_WP4_UNINA_2__O-30__bin.13 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium camemberti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS14-30__bin.22 85 0.9 3519 31161794 58.03 12895 ERS17785883 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS14-30__bin.36 99.3 0.1 201 11935414 36.26 148857 ERS17785883 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-23__bin.3 60.68965517 0 76 1187495 34.89 22730 ERS17785884 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-24__bin.3 54.50223459 0 58 1089432 34.9 24887 ERS17785885 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-24__bin.2 52.53918495 0 47 927294 35.74 30776 ERS17785885 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-27__bin.10 98.86792453 0.754716981 100 2128296 35.13 39338 ERS17785888 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-27__bin.3 55.51201672 3.448275862 997 4000880 62.25 4653 ERS17785888 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q03-30__bin.5 MASTER_WP4_TEAGASC_1__TGS15-27__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-27__bin.11 74.4 0.1 1677 10149718 36.68 8237 ERS17785888 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-28__bin.12 93.56360316 0.566037736 137 2092659 35 29705 ERS17785889 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-28__bin.23 76.16069295 3.522727273 664 2182329 32.99 3735 ERS17785889 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_TEAGASC_1__TGS15-28__bin.23 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-28__bin.33 72.90005537 0.581395349 498 2378065 63.41 5575 ERS17785889 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 WalshAM_2020__ERS3466776__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-28__bin.21 91.86159844 3.625730994 676 3074456 70.55 5519 ERS17785889 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-28__bin.31 51.72413793 0 407 2429171 55.07 6988 ERS17785889 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811293__bin.2 WalshAM_2020__ERS3466789__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella citrativorans cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-28__bin.26 92.1442965 4.743867244 421 2982817 67.26 11097 ERS17785889 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-BG__bin.13 MASTER_WP4_TEAGASC_1__TGS15-28__bin.26 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-28__bin.22 94.7 0.1 858 31597342 48.53 74098 ERS17785889 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__O-30__bin.13 MASTER_WP4_UNINA_2__O-30__bin.13 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium camemberti cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-28__bin.30 89.1 0.6 1246 29197179 58.1 84527 ERS17785889 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 KastmanEK_2016__CSB720__bin.5 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-28__bin.17 98.8 0.1 169 11840546 36.25 154419 ERS17785889 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-29__bin.16 99.62264151 0.377358491 77 2290152 35.02 48901 ERS17785890 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-29__bin.15 85.61046512 3.343023256 616 3111464 63.16 6659 ERS17785890 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 WolfeBE_2014__319_Tarentaise__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-29__bin.7 54.91528447 0.312109863 485 1498967 37.87 3128 ERS17785890 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2235_73323__bin.9 MASTER_WP4_TEAGASC_1__TGS15-29__bin.7 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-29__bin.1 97.7582846 2.2417154 555 3670073 70.47 9521 ERS17785890 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-29__bin.10 66.81397306 2.836700337 646 1981431 67.65 3309 ERS17785890 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-05-BG__bin.13 MASTER_WP4_TEAGASC_1__TGS15-29__bin.10 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-29__bin.18 51.4 1.4 6645 20723453 57.49 3298 ERS17785890 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KastmanEK_2016__CSB720__bin.5 MASTER_WP4_TEAGASC_1__TGS15-29__bin.18 Ascomycota;Sordariomycetes;Microascales;Microascaceae;Scopulariopsis Scopulariopsis brevicaulis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-29__bin.11 79 0.1 1922 11062843 36.37 7872 ERS17785890 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-30__bin.17 91.74283154 3.657407407 744 2883289 32.92 4615 ERS17785891 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_TEAGASC_1__TGS15-30__bin.17 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-30__bin.11 78.52574751 3.100775194 538 2708751 63.45 6663 ERS17785891 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 WolfeBE_2014__319_Tarentaise__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-30__bin.25 51.70383489 1.767676768 443 1222592 65.92 2847 ERS17785891 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-12D__bin.11 MASTER_WP4_TEAGASC_1__TGS15-30__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Agrococcus Agrococcus casei cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-30__bin.16 92.91184041 2.965465465 414 3093863 69.02 10367 ERS17785891 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_TEAGASC_1__TGS15-30__bin.16 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-30__bin.9 96.21212121 1.01010101 138 3432286 67.93 54129 ERS17785891 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS15-30__bin.9 MASTER_WP4_TEAGASC_1__TGS15-30__bin.9 Pseudomonadota;Alphaproteobacteria;Rhodobacterales;Rhodobacteraceae;Paracoccus Paracoccus marcusii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-30__bin.20 99.31002331 0.404040404 81 3880964 60.01 98147 ERS17785891 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS15-30__bin.20 MASTER_WP4_TEAGASC_1__TGS15-30__bin.20 Pseudomonadota;Alphaproteobacteria;Rhodobacterales;Rhodobacteraceae;Paracoccus NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-30__bin.13 85.49881437 3.353729604 524 2595635 43.11 5929 ERS17785891 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. O4_bin.circ.1 MASTER_WP4_TEAGASC_1__TGS15-30__bin.13 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter alimentarius cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-30__bin.19 96.67565139 3.539845898 936 6372974 62.5 9115 ERS17785891 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS05-30_0__bin.3 MASTER_WP4_TEAGASC_1__TGS15-30__bin.19 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Rhodococcus_F Rhodococcus F qingshengii cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-30__bin.32 95.02923977 0 204 3644713 67.42 29022 ERS17785891 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS15-30__bin.32 MASTER_WP4_TEAGASC_1__TGS15-30__bin.32 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Pseudoclavibacter Pseudoclavibacter helvolus cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-30__bin.21 59.1642925 0.854700855 103 819888 46.38 10066 ERS17785891 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS15-30__bin.21 MASTER_WP4_TEAGASC_1__TGS15-30__bin.21 Patescibacteriota;Saccharimonadia;Saccharimonadales;CALMAK01;CALMAK01 NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-30__bin.15 83.32860055 1.391437309 462 2499144 68.94 6866 ERS17785891 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS15-30__bin.15 MASTER_WP4_TEAGASC_1__TGS15-30__bin.15 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Citricoccus NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-30__bin.4 80.97587719 0 406 2316354 64.22 7367 ERS17785891 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS15-30__bin.4 MASTER_WP4_TEAGASC_1__TGS15-30__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Kocuria Kocuria carniphila cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-30__bin.30 79.30311891 0.584795322 599 3053064 64.54 6515 ERS17785891 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS15-30__bin.30 MASTER_WP4_TEAGASC_1__TGS15-30__bin.30 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Arthrobacter Arthrobacter ulcerisalmonis cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-30__bin.27 98.19722164 0.464396285 222 4771033 62.81 32632 ERS17785891 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS15-30__bin.27 MASTER_WP4_TEAGASC_1__TGS15-30__bin.27 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Comamonas NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-30__bin.24 70.69784112 4.312770563 789 2207509 67.42 2952 ERS17785891 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS15-30__bin.24 MASTER_WP4_TEAGASC_1__TGS15-30__bin.24 Pseudomonadota;Alphaproteobacteria;Caulobacterales;Caulobacteraceae;Brevundimonas Brevundimonas sp003938605 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-30__bin.8 70.42188805 1.169590643 446 4009087 66.65 13397 ERS17785891 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS15-30__bin.8 MASTER_WP4_TEAGASC_1__TGS15-30__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Pseudoclavibacter NA cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-30__bin.2 93.1 0 1081 11742190 36.26 15512 ERS17785891 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MASTER_WP4_TEAGASC_1__TGS15-30__bin.7 70.8 1.4 2244 15042809 54.94 8422 ERS17785891 NA Ireland PRJEB63604 ERP148754 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS15-30__bin.7 MASTER_WP4_TEAGASC_1__TGS15-30__bin.7 Basidiomycota;Tremellomycetes;Trichosporonales;Trichosporonaceae;unknown unknown cheese cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months GCF_001050115.1_ASM105011v1_genomic 99.04 0 2 3381292 40.75 3368778 GCF_001050115.1 GCF_001050115.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001050115.1_ASM105011v1_genomic GCF_001050115.1_ASM105011v1_genomic Bacillota;Bacilli;Bacillales_B;DSM-4216;Bacillus_O Bacillus O smithii cheese cheese_product Animal Dairy milk cheese solid low lactic mesophilic 1-3 months AlvarezOrdonezA_xxxx__Q01-22__bin.5 98.94641782 0.87196468 281 2213152 35.62 10640 SAMN36689967 SRR25395507 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 AlvarezOrdonezA_xxxx__Q01-22__bin.5 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q01-22__bin.22 99.38650307 1.840490798 110 1906904 38.69 32752 SAMN36689967 SRR25395507 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2137_73322__bin.20 MASTER_WP4_CSIC_1__P2137_73322__bin.20 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella thailandensis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q01-22__bin.8 79.00419539 3.868292202 510 2148922 47.15 4879 SAMN36689967 SRR25395507 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS01-22__bin.6 AlvarezOrdonezA_xxxx__Q01-22__bin.8 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Idiomarina NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q01-22__bin.14 53.44827586 0 292 974986 61.32 3775 SAMN36689967 SRR25395507 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic AlvarezOrdonezA_xxxx__Q01-27__bin.7 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q01-22__bin.2 65.51724138 1.724137931 580 2925604 57.25 6149 SAMN36689967 SRR25395507 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__DC18-032__bin.18 AlvarezOrdonezA_xxxx__Q01-22__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q01-22__bin.18 50.67092894 0.316856781 396 1083366 44.52 2872 SAMN36689967 SRR25395507 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2134_73322__bin.21 AlvarezOrdonezA_xxxx__Q01-22__bin.18 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;JAJYSO01 NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q01-22__bin.24 93.26867816 4.202586207 415 3807777 53.19 15708 SAMN36689967 SRR25395507 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.8 AlvarezOrdonezA_xxxx__Q01-22__bin.24 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter Marinobacter sp030457765 cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q01-22__bin.12 81.03448276 3.448275862 488 3358166 56.23 9420 SAMN36689967 SRR25395507 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q08-22__bin.21 AlvarezOrdonezA_xxxx__Q01-22__bin.12 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella salicampi cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q01-22__bin.16 74.04724395 1.657302886 843 3169000 66.07 4342 SAMN36689967 SRR25395507 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS11-22__bin.10 AlvarezOrdonezA_xxxx__Q01-22__bin.16 Pseudomonadota;Gammaproteobacteria;Nevskiales;Salinisphaeraceae;Salinisphaera NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q01-22__bin.3 82.20862914 4.002088397 536 2379658 61.53 5231 SAMN36689967 SRR25395507 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__RC17-032__bin.3 AlvarezOrdonezA_xxxx__Q01-22__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Halospina NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q01-22__bin.9 82.19488343 2.447318008 573 3266441 58.64 8327 SAMN36689967 SRR25395507 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q01-22__bin.9 AlvarezOrdonezA_xxxx__Q01-22__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Aidingimonas Aidingimonas lacisalsi cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q03-22__bin.2 75.26939655 0.862068966 82 2441458 61.44 56195 SAMN36689972 SRR25395502 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic AlvarezOrdonezA_xxxx__Q03-22__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q05-22__bin.5 60.5015674 0 269 982995 40.41 4138 SAMN36689978 SRR25395495 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q05-22__bin.3 80.39814815 0.185185185 459 1974653 34 5289 SAMN36689978 SRR25395495 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 AlvarezOrdonezA_xxxx__Q05-22__bin.3 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q05-22__bin.4 99.33774834 0 80 2287552 35.72 44507 SAMN36689978 SRR25395495 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 AlvarezOrdonezA_xxxx__Q05-22__bin.4 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q05-22__bin.10 99.32659933 0.168350168 17 2828477 46.86 327642 SAMN36689978 SRR25395495 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.10 AlvarezOrdonezA_xxxx__Q05-22__bin.10 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Idiomarina NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q05-22__bin.1 78.62068966 0 360 4098774 56.07 16631 SAMN36689978 SRR25395495 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.1 AlvarezOrdonezA_xxxx__Q05-22__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q05-22__bin.7 57.32758621 0 19 1841078 61.57 122976 SAMN36689978 SRR25395495 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.7 AlvarezOrdonezA_xxxx__Q05-22__bin.7 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q05-22__bin.2 58.62068966 0 56 2488101 55.88 85986 SAMN36689978 SRR25395495 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q08-22__bin.21 AlvarezOrdonezA_xxxx__Q05-22__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella salicampi cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q06-22__bin.2 96.98275862 0.969827586 24 3368598 61.03 175508 SAMN36689981 SRR25395492 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q06-22__bin.2 AlvarezOrdonezA_xxxx__Q06-22__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter canadensis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q06-22__bin.3 61.05499439 0.168350168 22 1695214 46.47 111537 SAMN36689981 SRR25395492 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.10 AlvarezOrdonezA_xxxx__Q06-22__bin.3 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Idiomarina NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q06-22__bin.1 97.8987069 0.707826234 336 4122272 54.45 20532 SAMN36689981 SRR25395492 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q06-22__bin.1 AlvarezOrdonezA_xxxx__Q06-22__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella sp963975065 cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q06-22__bin.6 67.34913793 0.646551724 16 2664160 61.97 287659 SAMN36689981 SRR25395492 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q06-22__bin.6 AlvarezOrdonezA_xxxx__Q06-22__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Salinicola Salinicola halophyticus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q07-22__bin.27 91.43758231 0.557981562 165 1515792 39.34 12008 SAMN36689984 SRR25395488 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q07-22__bin.22 88.42592593 0.666666667 503 2603537 33.44 7037 SAMN36689984 SRR25395488 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 AlvarezOrdonezA_xxxx__Q07-22__bin.22 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q07-22__bin.16 95.13245033 2.196467991 342 2343354 35.79 10077 SAMN36689984 SRR25395488 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 AlvarezOrdonezA_xxxx__Q07-22__bin.16 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q07-22__bin.1 88.52506462 1.62835249 288 2776629 61.5 15777 SAMN36689984 SRR25395488 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic AlvarezOrdonezA_xxxx__Q07-22__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q07-22__bin.28 96.881098 2.064220183 422 2671567 72.04 9044 SAMN36689984 SRR25395488 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB16-22__bin.17 AlvarezOrdonezA_xxxx__Q07-22__bin.28 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia Nesterenkonia halobia cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q07-22__bin.8 67.2903562 0.570342205 706 2397500 37.79 3731 SAMN36689984 SRR25395488 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS13-22__bin.10 AlvarezOrdonezA_xxxx__Q07-22__bin.8 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;Salegentibacter Salegentibacter sp017579965 cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q07-22__bin.2 98.8372093 1.162790698 128 4114971 63.69 57455 SAMN36689984 SRR25395488 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_90__bin.4 AlvarezOrdonezA_xxxx__Q07-22__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sandarakinum A cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q07-22__bin.19 92.58682831 1.097640891 120 2555338 65.48 83922 SAMN36689984 SRR25395488 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q07-22__bin.19 AlvarezOrdonezA_xxxx__Q07-22__bin.19 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia Nesterenkonia koreensis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q07-22__bin.5 98.70689655 1.893171062 37 5293704 54.76 274660 SAMN36689984 SRR25395488 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS11-22__bin.20 AlvarezOrdonezA_xxxx__Q07-22__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella titanicae cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q07-22__bin.12 85.85190039 3.027522936 310 2607300 65.11 12445 SAMN36689984 SRR25395488 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 AlvarezOrdonezA_xxxx__Q07-22__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q07-22__bin.21 84.73154362 1.677852349 264 2452586 48.47 12229 SAMN36689984 SRR25395488 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q07-22__bin.21 AlvarezOrdonezA_xxxx__Q07-22__bin.21 Bacillota;Bacilli;Bacillales_H;Marinococcaceae;Marinococcus NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q07-22__bin.14 97.80141844 3.546099291 178 3228540 65.26 28786 SAMN36689984 SRR25395488 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q07-22__bin.14 AlvarezOrdonezA_xxxx__Q07-22__bin.14 Halobacteriota;Halobacteria;Halobacteriales;Halococcaceae;Halococcus Halococcus salifodinae cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q07-22__bin.15 96.98275862 1.379310345 46 3203927 62.25 119565 SAMN36689984 SRR25395488 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q07-22__bin.15 AlvarezOrdonezA_xxxx__Q07-22__bin.15 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Halospina Halospina utahensis B cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q07-22__bin.18 97.09480122 1.539973788 70 2659787 62.9 75831 SAMN36689984 SRR25395488 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q07-22__bin.18 AlvarezOrdonezA_xxxx__Q07-22__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q07-22__bin.6 99.07801418 0 18 2754895 64.58 319727 SAMN36689984 SRR25395488 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q07-22__bin.6 AlvarezOrdonezA_xxxx__Q07-22__bin.6 Halobacteriota;Halobacteria;Halobacteriales;Halalkalicoccaceae;Halalkalicoccus NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q07-22__bin.7 94.82269504 0.85106383 71 2518002 65.03 52380 SAMN36689984 SRR25395488 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q07-22__bin.7 AlvarezOrdonezA_xxxx__Q07-22__bin.7 Halobacteriota;Halobacteria;Halobacteriales;Halococcaceae;Halococcus Halococcus morrhuae cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q07-22__bin.9 73.2232967 1.8 940 3356109 60.04 4054 SAMN36689984 SRR25395488 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q07-22__bin.9 AlvarezOrdonezA_xxxx__Q07-22__bin.9 Halobacteriota;Halobacteria;Halobacteriales;Natrialbaceae;Halostagnicola NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q08-22__bin.11 50.60866441 0.568181818 397 1182967 36.15 3162 SAMN36689987 SRR25395485 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 AlvarezOrdonezA_xxxx__Q08-22__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q08-22__bin.3 63.95326471 0.735080058 132 1062571 39.87 11216 SAMN36689987 SRR25395485 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q08-22__bin.5 88.99963925 3.121212121 332 1596322 64.39 6125 SAMN36689987 SRR25395485 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_296__bin.3 CM_UNINA_FFOOD__FFOOD_296__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q08-22__bin.14 94.37086093 2.097130243 351 2317736 35.71 9411 SAMN36689987 SRR25395485 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 AlvarezOrdonezA_xxxx__Q08-26__bin.9 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q08-22__bin.26 98.77300613 1.073619632 28 1799592 38.92 96347 SAMN36689987 SRR25395485 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2137_73322__bin.20 MASTER_WP4_CSIC_1__P2137_73322__bin.20 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella thailandensis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q08-22__bin.12 89.3244809 2.39485371 380 3766814 62.71 19815 SAMN36689987 SRR25395485 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2134_73322__bin.18 AlvarezOrdonezA_xxxx__Q08-22__bin.12 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Onishia Onishia taeanensis A cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q08-22__bin.27 73.68097675 2.353786342 767 2862286 53.44 4304 SAMN36689987 SRR25395485 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.8 AlvarezOrdonezA_xxxx__Q08-22__bin.27 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter Marinobacter sp030457765 cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q08-22__bin.21 85.51724138 1.724137931 437 3304313 56.42 11632 SAMN36689987 SRR25395485 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q08-22__bin.21 AlvarezOrdonezA_xxxx__Q08-22__bin.21 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella salicampi cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q08-22__bin.23 83.34332834 3.333333333 594 2144897 31.24 4174 SAMN36689987 SRR25395485 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q08-22__bin.23 AlvarezOrdonezA_xxxx__Q08-22__bin.23 Bacillota;Halanaerobiia;Halanaerobiales;Halanaerobiaceae;Halanaerobium NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months AlvarezOrdonezA_xxxx__Q08-22__bin.9 96.75675676 0.45045045 145 3302924 42.44 46721 SAMN36689987 SRR25395485 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q08-22__bin.9 AlvarezOrdonezA_xxxx__Q08-22__bin.9 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Celerinatantimonadaceae;Celerinatantimonas NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2134_73322__bin.4 93.81368268 0.436681223 75 1584743 39.28 34510 SAMN36689888 SRR25395263 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2134_73322__bin.20 97.22222222 1.435185185 291 2405697 32.85 23194 SAMN36689888 SRR25395263 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2134_73322__bin.24 93.04981726 0 79 2453843 63.45 60491 SAMN36689888 SRR25395263 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2134_73322__bin.24 MASTER_WP4_CSIC_1__P2134_73322__bin.24 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella jeotgali cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2134_73322__bin.25 84.69582787 4.519440804 535 2171285 72.22 4955 SAMN36689888 SRR25395263 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB16-22__bin.17 MASTER_WP4_CSIC_1__P2134_73322__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia Nesterenkonia halobia cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2134_73322__bin.21 97.14828897 0.190114068 30 2621572 42.67 141445 SAMN36689888 SRR25395263 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2134_73322__bin.21 MASTER_WP4_CSIC_1__P2134_73322__bin.21 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;JAJYSO01 NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2134_73322__bin.8 93.32358674 0.877192982 422 3669067 70.71 15092 SAMN36689888 SRR25395263 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-29__bin.23 MASTER_WP4_CSIC_1__P2134_73322__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp030457675 cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2134_73322__bin.18 93.12881759 2.370689655 288 3387357 62.82 20967 SAMN36689888 SRR25395263 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2134_73322__bin.18 MASTER_WP4_CSIC_1__P2134_73322__bin.18 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Onishia Onishia taeanensis A cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2134_73322__bin.12 99.17617237 0.773130545 64 3717062 36.89 154557 SAMN36689888 SRR25395263 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2134_73322__bin.12 MASTER_WP4_CSIC_1__P2134_73322__bin.12 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;Salegentibacter NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2134_73322__bin.19 98.48484848 0.791245791 159 3785577 68.58 55709 SAMN36689888 SRR25395263 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2134_73322__bin.19 MASTER_WP4_CSIC_1__P2134_73322__bin.19 Pseudomonadota;Alphaproteobacteria;Rhodobacterales;Rhodobacteraceae;Palleronia Palleronia sp947500825 cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2134_73322__bin.26 77.11531295 4.363888603 1097 3312552 37.03 3301 SAMN36689888 SRR25395263 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2134_73322__bin.26 MASTER_WP4_CSIC_1__P2134_73322__bin.26 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;Salegentibacter NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2134_73322__bin.2 56.37931034 1.724137931 550 2583566 54.19 5677 SAMN36689888 SRR25395263 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2134_73322__bin.2 MASTER_WP4_CSIC_1__P2134_73322__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2134_73322__bin.3 91.78970917 2.348993289 288 2337825 48.35 12483 SAMN36689888 SRR25395263 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__T-22__bin.15 MASTER_WP4_CSIC_1__P2134_73322__bin.3 Bacillota;Bacilli;Bacillales_H;Marinococcaceae;Marinococcus Marinococcus sp947493875 cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2134_73322__bin.7 91.87801932 3.482286634 524 3399179 62.61 8611 SAMN36689888 SRR25395263 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2134_73322__bin.7 MASTER_WP4_CSIC_1__P2134_73322__bin.7 Pseudomonadota;Gammaproteobacteria;Nevskiales;Salinisphaeraceae;Salinisphaera NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2134_73322__bin.16 93.6 0.1 950 11817082 36.25 19434 SAMN36689888 SRR25395263 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2135_73322__bin.1 88.57314871 3.973509934 267 2078844 35.35 10235 SAMN36689883 SRR25395225 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 MASTER_WP4_CSIC_1__P2135_73322__bin.1 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2135_73322__bin.7 97.57326007 0.549450549 113 2762471 44.66 34679 SAMN36689883 SRR25395225 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2135_73322__bin.7 MASTER_WP4_CSIC_1__P2135_73322__bin.7 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030454045 cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2136_73322__bin.13 96.2372065 2.008830022 342 2261059 35.55 9346 SAMN36689907 SRR25395387 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 MASTER_WP4_CSIC_1__P2136_73322__bin.13 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2136_73322__bin.11 81.34207356 3.051680829 412 2311873 46.89 7219 SAMN36689907 SRR25395387 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS01-22__bin.6 MASTER_WP4_CSIC_1__P2136_73322__bin.11 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Idiomarina NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2136_73322__bin.20 54.31034483 1.724137931 425 1320836 61.96 3320 SAMN36689907 SRR25395387 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic MASTER_WP4_CSIC_1__P2136_73322__bin.20 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2136_73322__bin.16 52.54702194 0.05387931 29 2090690 53.71 123522 SAMN36689907 SRR25395387 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.8 MASTER_WP4_CSIC_1__P2136_73322__bin.16 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter Marinobacter sp030457765 cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2136_73322__bin.3 95.77137546 0.681536555 145 3563645 58.57 47267 SAMN36689907 SRR25395387 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2136_73322__bin.3 MASTER_WP4_CSIC_1__P2136_73322__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Alcanivoracaceae;Alcanivorax Alcanivorax sp000155615 cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2136_73322__bin.14 98.09885932 0.836501901 107 2939700 35.59 46311 SAMN36689907 SRR25395387 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2136_73322__bin.14 MASTER_WP4_CSIC_1__P2136_73322__bin.14 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;Mesonia Mesonia putida cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2136_73322__bin.21 74.94146433 0.652173913 709 2845429 61.65 4713 SAMN36689907 SRR25395387 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2136_73322__bin.21 MASTER_WP4_CSIC_1__P2136_73322__bin.21 Pseudomonadota;Alphaproteobacteria;Kiloniellales;DSM-21159;Fodinicurvata NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2136_73322__bin.26 50 0 17 1328940 63.59 118834 SAMN36689907 SRR25395387 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_82 MAG_82 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Cobetia Cobetia amphilecti cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2137_73322__bin.61 89.58842457 0.568181818 176 1877323 35.09 19729 SAMN36689863 SRR25395514 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2137_73322__bin.32 85.55208983 1.008005822 147 1421973 39.26 12052 SAMN36689863 SRR25395514 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2137_73322__bin.57 88.53897158 1.635220126 175 2018822 35.44 18256 SAMN36689863 SRR25395514 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2137_73322__bin.19 67.24137931 0 19 1391916 32.76 347833 SAMN36689863 SRR25395514 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2137_73322__bin.37 89.18322296 3.702588802 370 2414268 35.37 8026 SAMN36689863 SRR25395514 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 MASTER_WP4_CSIC_1__P2137_73322__bin.37 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2137_73322__bin.20 99.38650307 0.766871166 41 1817015 38.84 68753 SAMN36689863 SRR25395514 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2137_73322__bin.20 MASTER_WP4_CSIC_1__P2137_73322__bin.20 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella thailandensis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2137_73322__bin.23 98.27327327 1.156156156 178 2935503 69.21 58959 SAMN36689863 SRR25395514 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_2__P2570__bin.32 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2137_73322__bin.40 87.69412269 3.153153153 454 3139416 67.64 8966 SAMN36689863 SRR25395514 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS11-30__bin.13 MASTER_WP4_TEAGASC_1__TGS11-30__bin.13 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2137_73322__bin.14 66.03403141 0.523560209 66 1292483 38.18 29785 SAMN36689863 SRR25395514 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2137_73322__bin.62 98.06034483 0.431034483 21 3286968 56.85 233438 SAMN36689863 SRR25395514 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__DC18-032__bin.18 MASTER_WP4_CSIC_1__P2137_73322__bin.62 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2137_73322__bin.17 98.54651163 0 146 3571841 65.3 36543 SAMN36689863 SRR25395514 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. BertuzziAS_2018__ERS2032125__bin.2 MASTER_WP4_CSIC_1__P2137_73322__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium linens cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2137_73322__bin.15 97.54901961 0 67 2604794 58.92 58791 SAMN36689863 SRR25395514 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 MASTER_WP4_CSIC_1__P2137_73322__bin.15 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2137_73322__bin.16 99.3373494 2.231425703 49 4871397 68.16 214311 SAMN36689863 SRR25395514 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2137_73322__bin.16 MASTER_WP4_CSIC_1__P2137_73322__bin.16 Pseudomonadota;Alphaproteobacteria;Rhodobacterales;Rhodobacteraceae;Carideicomes NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2137_73322__bin.1 93.18568726 0.969945355 484 3462916 60.96 9348 SAMN36689863 SRR25395514 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2137_73322__bin.1 MASTER_WP4_CSIC_1__P2137_73322__bin.1 Pseudomonadota;Alphaproteobacteria;Rhizobiales;Devosiaceae;Pelagibacterium Pelagibacterium nitratireducens cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2137_73322__bin.21 79.84790875 0.538656527 12 2040849 33.56 292176 SAMN36689863 SRR25395514 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2137_73322__bin.21 MASTER_WP4_CSIC_1__P2137_73322__bin.21 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;Psychroflexus NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2137_73322__bin.27 56.37931034 0 461 2779082 54.96 7022 SAMN36689863 SRR25395514 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2137_73322__bin.27 MASTER_WP4_CSIC_1__P2137_73322__bin.27 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2137_73322__bin.2 93.91304348 2.463768116 72 2930789 32.2 56191 SAMN36689863 SRR25395514 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2137_73322__bin.2 MASTER_WP4_CSIC_1__P2137_73322__bin.2 Bacillota;Halanaerobiia;Halanaerobiales;Halanaerobiaceae;Halanaerobium NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2137_73322__bin.33 58.85156557 2.902036235 310 1546751 47.01 5609 SAMN36689863 SRR25395514 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.10 MASTER_WP4_CSIC_1__P2137_73322__bin.33 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Idiomarina NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2137_73322__bin.36 95.07772021 4.576856649 500 3706172 67.28 10690 SAMN36689863 SRR25395514 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2137_73322__bin.36 MASTER_WP4_CSIC_1__P2137_73322__bin.36 Actinomycetota;Actinomycetes;Propionibacteriales;Nocardioidaceae;Nocardioides NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2137_73322__bin.38 91.72108027 1.850443599 439 2484148 35.63 7611 SAMN36689863 SRR25395514 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2137_73322__bin.38 MASTER_WP4_CSIC_1__P2137_73322__bin.38 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;Mesonia NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2137_73322__bin.39 98.56927711 1.40562249 88 3594864 64.33 77262 SAMN36689863 SRR25395514 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2137_73322__bin.39 MASTER_WP4_CSIC_1__P2137_73322__bin.39 Pseudomonadota;Alphaproteobacteria;Rhodobacterales;Rhodobacteraceae;Roseovarius NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2137_73322__bin.3 96.92771084 0.903614458 68 3175646 66.07 88232 SAMN36689863 SRR25395514 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2137_73322__bin.3 MASTER_WP4_CSIC_1__P2137_73322__bin.3 Pseudomonadota;Alphaproteobacteria;Rhodobacterales;Rhodobacteraceae;Roseovarius NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2137_73322__bin.43 97.37373737 1.161616162 30 3727542 68.08 230608 SAMN36689863 SRR25395514 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2137_73322__bin.43 MASTER_WP4_CSIC_1__P2137_73322__bin.43 Pseudomonadota;Alphaproteobacteria;Rhodobacterales;Rhodobacteraceae;Tranquillimonas Tranquillimonas rosea cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2137_73322__bin.45 72.38001638 2.072072072 888 3014932 34.53 3715 SAMN36689863 SRR25395514 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2137_73322__bin.45 MASTER_WP4_CSIC_1__P2137_73322__bin.45 Bacteroidota;Bacteroidia;Flavobacteriales;Crocinitomicaceae;Brumimicrobium NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2137_73322__bin.46 50 0 9 1664659 62.13 465576 SAMN36689863 SRR25395514 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2137_73322__bin.46 MASTER_WP4_CSIC_1__P2137_73322__bin.46 Pseudomonadota;Alphaproteobacteria;Kiloniellales;DSM-21159;Fodinicurvata NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2137_73322__bin.60 97.34840905 2.281368821 264 3878388 37.37 21342 SAMN36689863 SRR25395514 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2137_73322__bin.60 MASTER_WP4_CSIC_1__P2137_73322__bin.60 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;Salegentibacter NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2137_73322__bin.66 98.90710383 0.273224044 72 3072376 36.46 64761 SAMN36689863 SRR25395514 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2137_73322__bin.66 MASTER_WP4_CSIC_1__P2137_73322__bin.66 Bacteroidota;Bacteroidia;Bacteroidales;Dysgonomonadaceae;UBA2632 NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2137_73322__bin.9 52.93103448 1.724137931 301 3638704 55.97 18373 SAMN36689863 SRR25395514 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.1 MASTER_WP4_CSIC_1__P2137_73322__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2138_73322__bin.16 52.75030074 0.753794968 318 919635 39.78 3063 SAMN36689878 SRR25395290 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 MASTER_WP4_CSIC_1__P2138_73322__bin.16 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2138_73322__bin.8 52.29885057 1.724137931 1083 3637512 56.17 3671 SAMN36689878 SRR25395290 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS08-29__bin.64 MASTER_WP4_CSIC_1__P2138_73322__bin.8 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Serratia Serratia liquefaciens cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2138_73322__bin.5 98.01324503 0.331125828 169 2181986 35.66 21156 SAMN36689878 SRR25395290 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 MASTER_WP4_CSIC_1__P2138_73322__bin.5 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2138_73322__bin.7 96.21621622 0 65 3179352 49.58 95140 SAMN36689878 SRR25395290 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2138_73322__bin.7 MASTER_WP4_CSIC_1__P2138_73322__bin.7 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Salinivibrio Salinivibrio costicola cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2139_73322__bin.7 77.68940182 0.58224163 44 1323469 39.58 40398 SAMN36689916 SRR25395371 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_CSIC_1__P2139_73322__bin.4 92.4033536 3.018867925 394 2082037 35.55 6711 SAMN36689916 SRR25395371 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_1__DC18-032__bin.3 95.94983005 2.367424242 211 2217301 34.83 17248 SAMN36689941 SRR25395299 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_1__DC18-032__bin.19 70.14106583 4.310344828 550 2503331 35.21 5716 SAMN36689941 SRR25395299 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_FFoQSI_1__DC18-032__bin.19 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_1__DC18-032__bin.1 93.33333333 1.388888889 356 2778907 32.92 10934 SAMN36689941 SRR25395299 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_1__DC18-032__bin.14 97.74834437 0 147 2191513 35.67 27888 SAMN36689941 SRR25395299 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 MASTER_WP4_FFoQSI_1__DC18-032__bin.14 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_1__DC18-032__bin.15 93.3662928 1.141282959 235 1704534 36.52 10453 SAMN36689941 SRR25395299 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_1__DC18-032__bin.4 79.83280971 3.930020284 431 2112104 63.76 6084 SAMN36689941 SRR25395299 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2134_73322__bin.24 MASTER_WP4_FFoQSI_1__DC18-032__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella jeotgali cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_1__DC18-032__bin.5 52.38244514 0 377 1135535 61.44 3216 SAMN36689941 SRR25395299 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic MASTER_WP4_FFoQSI_1__DC18-032__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_1__DC18-032__bin.18 98.52614016 0.431034483 83 3290974 56.96 102626 SAMN36689941 SRR25395299 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__DC18-032__bin.18 MASTER_WP4_FFoQSI_1__DC18-032__bin.18 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_1__DC18-032__bin.11 81.23836985 2.187922583 535 2224308 60.79 4825 SAMN36689941 SRR25395299 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_35 MASTER_WP4_FFoQSI_1__DC18-032__bin.11 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_1__RC17-032__bin.2 68.83257087 0.535454356 171 1099452 39.75 8406 SAMN36689990 SRR25395482 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 AlvarezOrdonezA_xxxx__Q08-21__bin.8 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_1__RC17-032__bin.11 90.2251408 4.618055556 479 2425232 63.67 6628 SAMN36689990 SRR25395482 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2134_73322__bin.24 MASTER_WP4_FFoQSI_1__RC17-032__bin.11 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella jeotgali cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_1__RC17-032__bin.4 97.07224335 1.013941698 128 2617857 42.85 39064 SAMN36689990 SRR25395482 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2134_73322__bin.21 MASTER_WP4_FFoQSI_1__RC17-032__bin.4 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;JAJYSO01 NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_1__RC17-032__bin.3 95.83333333 2.040229885 136 2775348 61.24 46561 SAMN36689990 SRR25395482 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__RC17-032__bin.3 MASTER_WP4_FFoQSI_1__RC17-032__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Halospina NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_1__RC17-032__bin.10 96.44808743 1.639344262 20 3257437 42.92 257608 SAMN36689990 SRR25395482 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__RC17-032__bin.10 MASTER_WP4_FFoQSI_1__RC17-032__bin.10 Bacteroidota_A;Rhodothermia;Balneolales;Balneolaceae;Fodinibius NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB05-22__bin.1 94.35953421 0.269286754 131 1675975 39.01 20950 SAMN36690014 SRR25395288 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB05-22__bin.3 93.81898455 0 116 2210974 35.59 31623 SAMN36690014 SRR25395288 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 MASTER_WP4_FFoQSI_1__DC18-032__bin.14 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB08-22__bin.6 66.3460872 0.40444999 115 1030438 39.72 12157 SAMN36690022 SRR25395280 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB08-22__bin.10 85.76726955 4.564246676 612 2749810 61.53 5813 SAMN36690022 SRR25395280 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic MASTER_WP4_FFoQSI_2__VB08-22__bin.10 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB08-22__bin.4 95.77922078 0 76 1643787 50.46 30109 SAMN36690022 SRR25395280 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB08-22__bin.9 98.74399301 2.829292267 366 2820539 71.6 10758 SAMN36690022 SRR25395280 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB16-22__bin.17 MASTER_WP4_FFoQSI_2__VB08-22__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia Nesterenkonia halobia cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB10-22__bin.18 72.22222222 0.555555556 29 1623126 32.7 123682 SAMN36690027 SRR25395274 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB10-22__bin.16 71.34256472 0.662251656 119 1544363 35.56 27958 SAMN36690027 SRR25395274 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 MASTER_WP4_FFoQSI_1__DC18-032__bin.14 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB10-22__bin.3 68.96551724 0 44 765289 51.13 28662 SAMN36690027 SRR25395274 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB10-22__bin.2 85.31527996 2.756410256 327 2151304 47.77 7466 SAMN36690027 SRR25395274 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2584__bin.5 MASTER_WP4_FFoQSI_2__VB10-22__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter celer cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB10-22__bin.5 97.29390681 0.833333333 81 2524348 32.97 67488 SAMN36690027 SRR25395274 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB10-22__bin.20 99.34210526 0 111 2789028 70.38 35477 SAMN36690027 SRR25395274 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-22__bin.20 MASTER_WP4_FFoQSI_2__VB10-22__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Kocuria Kocuria sp025149945 cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB10-22__bin.15 83.2 0.6 42 9250200 45.1 485528 SAMN36690027 SRR25395274 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-22__bin.15 MASTER_WP4_FFoQSI_2__VB10-22__bin.15 Ascomycota;Saccharomycetes;Saccharomycetales;Trichomonascaceae;Wickerhamiella Wickerhamiella versatilis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB10-22__bin.21 78.5 0.5 56 9763473 46 258316 SAMN36690027 SRR25395274 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-22__bin.21 MASTER_WP4_FFoQSI_2__VB10-22__bin.21 Ascomycota;Saccharomycetes;Saccharomycetales;unknown;unknown unknown cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB11-22__bin.1 92.37020864 0.655021834 85 1557517 39.18 26264 SAMN36690030 SRR25395271 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB11-22__bin.7 96.90949227 0.242825607 208 2173539 35.83 15487 SAMN36690030 SRR25395271 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 MASTER_WP4_FFoQSI_1__DC18-032__bin.14 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB11-22__bin.5 68.96551724 0 382 2366415 61.6 9083 SAMN36690030 SRR25395271 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic MASTER_WP4_FFoQSI_2__VB11-22__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB11-22__bin.9 96.42857143 0 116 1668364 50.5 23121 SAMN36690030 SRR25395271 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB11-22__bin.10 51.3061651 0 727 2709106 51.54 4237 SAMN36690030 SRR25395271 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967688__bin.2 MASTER_WP4_FFoQSI_2__VB11-22__bin.10 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB11-22__bin.8 98.36706121 0.848686697 183 5195546 57.6 54860 SAMN36690030 SRR25395271 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_19 MAG_19 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella pneumoniae cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB15-22__bin.7 77.30834546 0.659180703 138 1275417 39.51 11867 SAMN36690041 SRR25394928 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB15-22__bin.3 55.17241379 0 95 710603 51.16 10555 SAMN36690041 SRR25394928 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB15-22__bin.13 95.40284176 3.138159689 583 4277409 51.21 9896 SAMN36690041 SRR25394928 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967688__bin.2 MASTER_WP4_FFoQSI_2__VB15-22__bin.13 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB15-22__bin.2 57.75862069 0 85 1614221 36.44 33088 SAMN36690041 SRR25394928 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967702__bin.3 MASTER_WP4_FFoQSI_2__VB15-25__bin.4 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Kurthia Kurthia gibsonii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB15-22__bin.9 57.25166411 0.135120336 89 2705107 57.74 46487 SAMN36690041 SRR25394928 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_19 MAG_19 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella pneumoniae cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB15-22__bin.1 58.48637 0.790229885 552 1554190 61.95 2973 SAMN36690041 SRR25394928 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic MASTER_WP4_FFoQSI_2__VB15-22__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB15-22__bin.6 95.82800609 4.294312993 553 3822366 38.78 9445 SAMN36690041 SRR25394928 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_312 MASTER_WP4_FFoQSI_2__VB15-22__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter baumannii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB16-22__bin.8 90.57028488 0.451237263 160 1456880 39.35 12223 SAMN36690044 SRR25394924 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB16-22__bin.10 98.33333333 1.018518519 170 2561445 32.91 47558 SAMN36690044 SRR25394924 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB16-22__bin.15 94.31065623 1.589403974 217 2042300 35.7 14802 SAMN36690044 SRR25394924 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 MASTER_WP4_FFoQSI_1__DC18-032__bin.14 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB16-22__bin.23 72.20004705 3.003246753 311 1412857 36.87 5654 SAMN36690044 SRR25394924 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 MASTER_WP4_FFoQSI_2__VB16-22__bin.23 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB16-22__bin.6 95.77922078 0 99 1527994 50.78 23314 SAMN36690044 SRR25394924 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB16-22__bin.5 81.69602837 4.618926332 503 2206523 63.85 5060 SAMN36690044 SRR25394924 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2134_73322__bin.24 MASTER_WP4_FFoQSI_2__VB16-22__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella jeotgali cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB16-22__bin.11 93.33886813 3.915317559 632 3327112 38.96 6501 SAMN36690044 SRR25394924 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_312 MASTER_WP4_FFoQSI_2__VB16-22__bin.11 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter baumannii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB16-22__bin.7 98.68421053 0 70 2830831 70.79 53938 SAMN36690044 SRR25394924 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB16-22__bin.7 MASTER_WP4_FFoQSI_2__VB16-22__bin.7 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Kocuria Kocuria salsicia cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB16-22__bin.14 96.27192982 2.094298246 428 3080587 69.95 10067 SAMN36690044 SRR25394924 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-22__bin.20 MASTER_WP4_FFoQSI_2__VB10-22__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Kocuria Kocuria sp025149945 cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB16-22__bin.17 97.84567497 1.433486239 385 2769883 72.02 10466 SAMN36690044 SRR25394924 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB16-22__bin.17 MASTER_WP4_FFoQSI_2__VB16-22__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia Nesterenkonia halobia cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB16-22__bin.19 94.55006337 0.443599493 28 2613167 42.54 145062 SAMN36690044 SRR25394924 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2134_73322__bin.21 MASTER_WP4_FFoQSI_2__VB16-22__bin.19 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;JAJYSO01 NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_2__VB16-22__bin.2 98.34437086 1.181015453 208 2079282 35.67 19687 SAMN36690044 SRR25394924 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB07-22__bin.2 MASTER_WP4_FFoQSI_3__VB07-22__bin.2 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus muriaticus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB01-22__bin.3 56.72330889 0.513620295 374 1038071 39.26 2834 SAMN36690004 SRR25395466 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 MASTER_WP4_FFoQSI_3__VB01-22__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB01-22__bin.2 88.71701834 1.008202324 291 1445510 50.99 6131 SAMN36690004 SRR25395466 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_2__VB05-21__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB01-22__bin.1 58.45439111 0.879120879 567 1534120 43.98 2816 SAMN36690004 SRR25395466 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746954__bin.5 MASTER_WP4_FFoQSI_3__VB01-22__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter faecalis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB02-22__bin.2 65.2187347 0.560407569 376 1124651 39.6 3234 SAMN36690007 SRR25395463 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 MASTER_WP4_FFoQSI_3__VB02-22__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB02-22__bin.6 98.92407907 1.477987421 213 2265216 35.48 18962 SAMN36690007 SRR25395463 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB02-22__bin.3 94.72987902 4.765073604 636 2836691 61.54 5638 SAMN36690007 SRR25395463 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic MASTER_WP4_FFoQSI_3__VB02-22__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB02-22__bin.7 98.45474614 1.324503311 154 2404150 71.82 26494 SAMN36690007 SRR25395463 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_286__bin.4 MASTER_WP4_FFoQSI_3__VB02-22__bin.7 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia kristinae cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB02-22__bin.5 80.53935381 2.065047022 619 2204053 64.17 4074 SAMN36690007 SRR25395463 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2134_73322__bin.24 MASTER_WP4_FFoQSI_3__VB02-22__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella jeotgali cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB02-22__bin.4 89.90599554 2.754039116 895 4572656 58.28 6642 SAMN36690007 SRR25395463 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. EBC_134.7 MASTER_WP4_FFoQSI_3__VB02-22__bin.4 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella variicola cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB07-22__bin.24 94.48051948 0 113 1454600 50.98 21601 SAMN36690019 SRR25395283 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_2__VB05-21__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB07-22__bin.13 89.39502999 2.611961451 450 3724034 51.55 11382 SAMN36690019 SRR25395283 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967688__bin.2 MASTER_WP4_FFoQSI_3__VB07-22__bin.13 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB07-22__bin.6 86.55191535 2.765567766 325 2315106 47.75 9115 SAMN36690019 SRR25395283 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2584__bin.5 MASTER_WP4_FFoQSI_3__VB07-22__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter celer cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB07-22__bin.17 95.91906946 4.881498471 500 2638444 72.15 7320 SAMN36690019 SRR25395283 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB16-22__bin.17 MASTER_WP4_FFoQSI_3__VB07-22__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia Nesterenkonia halobia cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB07-22__bin.2 99.33774834 0.022075055 84 2056242 35.83 40027 SAMN36690019 SRR25395283 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB07-22__bin.2 MASTER_WP4_FFoQSI_3__VB07-22__bin.2 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus muriaticus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB07-22__bin.8 92.47469783 4.863841561 460 2354999 65.88 6721 SAMN36690019 SRR25395283 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q07-22__bin.19 MASTER_WP4_FFoQSI_3__VB07-22__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia Nesterenkonia koreensis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB07-22__bin.11 82.18201754 1.629072682 536 2375798 63.92 5111 SAMN36690019 SRR25395283 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB07-22__bin.11 MASTER_WP4_FFoQSI_3__VB07-22__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Kocuria Kocuria atrinae cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB07-22__bin.12 95.24941211 3.591954023 200 2804796 60.71 24595 SAMN36690019 SRR25395283 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB07-22__bin.12 MASTER_WP4_FFoQSI_3__VB07-22__bin.12 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB12-22__bin.6 89.70653703 1.194467363 117 1472275 39.42 15529 SAMN36690033 SRR25395267 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB12-22__bin.7 51.72413793 0 18 541014 50.81 48360 SAMN36690033 SRR25395267 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB12-22__bin.3 98.67549669 0.022075055 81 2018583 35.83 37331 SAMN36690033 SRR25395267 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB07-22__bin.2 MASTER_WP4_FFoQSI_3__VB07-22__bin.2 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus muriaticus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB14-22__bin.22 96.47401434 1.161616162 386 2562266 32.91 9469 SAMN36690038 SRR25394931 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB14-22__bin.4 82.56782946 2.42248062 611 2856674 63.34 5769 SAMN36690038 SRR25394931 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_FFoQSI_3__VB14-22__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB14-22__bin.19 95.69536424 4.271523179 288 2541276 35.75 12739 SAMN36690038 SRR25394931 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 MASTER_WP4_FFoQSI_3__VB14-22__bin.19 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB14-22__bin.28 89.14962249 3.013322884 440 2444178 61.56 7552 SAMN36690038 SRR25394931 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic MASTER_WP4_FFoQSI_3__VB14-22__bin.28 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB14-22__bin.57 75.63358662 0 143 960720 51.7 8464 SAMN36690038 SRR25394931 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB14-22__bin.34 84.48237885 2.98825257 296 2190454 55.71 9953 SAMN36690038 SRR25394931 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB14-22__bin.64 96.2962963 1.111111111 97 1986716 55.25 44622 SAMN36690038 SRR25394931 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. QuijadaN_2022__ERR7245779__bin.25 QuijadaN_2022__ERR7245779__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Canibacter NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB14-22__bin.5 93.98974868 0.814281205 198 4365504 50.87 32095 SAMN36690038 SRR25394931 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967688__bin.2 MAG_122 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB14-22__bin.68 66.1248244 1.324503311 557 1770503 36.48 3459 SAMN36690038 SRR25394931 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967702__bin.3 MASTER_WP4_FFoQSI_3__VB14-22__bin.68 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Kurthia Kurthia gibsonii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB14-22__bin.12 98.08558559 1.833976834 157 2929388 67.13 32483 SAMN36690038 SRR25394931 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 MASTER_WP4_TEAGASC_1__TGS04-30__bin.1 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecigallinarum cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB14-22__bin.44 51.72413793 1.724137931 68 687972 36.01 19528 SAMN36690038 SRR25394931 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 MASTER_WP4_FFoQSI_3__VB14-22__bin.44 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB14-22__bin.49 62.93103448 0 407 1777352 64.33 5086 SAMN36690038 SRR25394931 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2134_73322__bin.24 MASTER_WP4_FFoQSI_3__VB14-22__bin.49 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella jeotgali cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB14-22__bin.23 94.20380079 1.544888598 536 2627551 71.85 6194 SAMN36690038 SRR25394931 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB16-22__bin.17 MASTER_WP4_FFoQSI_3__VB14-22__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia Nesterenkonia halobia cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB14-22__bin.50 98.13218391 0.766283525 150 2451936 43.53 23585 SAMN36690038 SRR25394931 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB14-22__bin.50 MASTER_WP4_FFoQSI_3__VB14-22__bin.50 Bacillota;Bacilli;Staphylococcales;Salinicoccaceae;Salinicoccus NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB14-22__bin.27 78.71286588 4.079292267 286 2156262 55.85 11054 SAMN36690038 SRR25394931 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp030453185 cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB14-22__bin.39 67.97410192 4.678362573 701 3224013 70 6361 SAMN36690038 SRR25394931 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB13-29__bin.20 MASTER_WP4_FFoQSI_3__VB14-22__bin.39 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp014400405 cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB14-22__bin.29 82.57198228 0.639534884 278 2622284 68.96 13095 SAMN36690038 SRR25394931 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 MASTER_WP4_FFoQSI_1__VB-16-M16__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium yomogidense A cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB14-22__bin.62 94.7761031 2.47051114 447 3196146 64.42 10140 SAMN36690038 SRR25394931 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259376__bin.8 MASTER_WP4_FFoQSI_3__VB14-22__bin.62 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Arthrobacter_H Arthrobacter H rhombi A cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB14-22__bin.46 94.67889908 4.816513761 307 2518414 65.55 12897 SAMN36690038 SRR25394931 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-1G__bin.1 MASTER_WP4_FFoQSI_1__KM-1G__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB14-22__bin.56 76.72413793 2.586206897 303 1736291 46.49 6807 SAMN36690038 SRR25394931 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB14-F-AR__bin.13 MASTER_WP4_FFoQSI_1__VB14-F-AR__bin.13 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Idiomarina NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB14-22__bin.43 86.96447231 3.256704981 319 1634618 41.03 5994 SAMN36690038 SRR25394931 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB14-22__bin.43 MASTER_WP4_FFoQSI_3__VB14-22__bin.43 Bacillota;Bacilli;Staphylococcales;Salinicoccaceae;Jeotgalicoccus Jeotgalicoccus psychrophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB14-22__bin.24 70.18919969 1.053391053 813 2407112 68.01 3203 SAMN36690038 SRR25394931 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS15-30__bin.9 MASTER_WP4_FFoQSI_3__VB14-22__bin.24 Pseudomonadota;Alphaproteobacteria;Rhodobacterales;Rhodobacteraceae;Paracoccus Paracoccus marcusii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB14-22__bin.41 74.31167733 3.954691142 423 2119969 43.76 6010 SAMN36690038 SRR25394931 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB14-22__bin.41 MASTER_WP4_FFoQSI_3__VB14-22__bin.41 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp030408035 cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB14-22__bin.20 90.84807925 3.631676809 360 2856519 61.29 10832 SAMN36690038 SRR25394931 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__RC17-032__bin.3 MASTER_WP4_FFoQSI_3__VB14-22__bin.20 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Halospina NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB14-22__bin.47 84.35357579 3.103448276 411 2671822 55.57 8642 SAMN36690038 SRR25394931 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB14-22__bin.47 MASTER_WP4_FFoQSI_3__VB14-22__bin.47 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB14-22__bin.35 98.63438645 1.129426129 75 3061425 44.5 68343 SAMN36690038 SRR25394931 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB14-22__bin.35 MASTER_WP4_FFoQSI_3__VB14-22__bin.35 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_FFoQSI_3__VB14-22__bin.17 90.46476762 1.086956522 77 1940277 30.51 33321 SAMN36690038 SRR25394931 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB14-22__bin.17 MASTER_WP4_FFoQSI_3__VB14-22__bin.17 Bacillota;Halanaerobiia;Halanaerobiales;Halanaerobiaceae;Halanaerobium NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS01-22__bin.34 95.22602778 2.830188679 255 2104595 35.5 11526 SAMN40695624 SRR28523200 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS01-22__bin.10 98.41269841 0 82 1651536 39.37 33510 SAMN40695624 SRR28523200 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS01-22__bin.1 53.7037037 0.154320988 42 1405867 38.67 57896 SAMN40695624 SRR28523200 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967740__bin.10 LeechJ_2020__ERS3967740__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus parvulus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS01-22__bin.6 96.53679654 0.336700337 41 2719552 46.98 119528 SAMN40695624 SRR28523200 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS01-22__bin.6 MASTER_WP4_TEAGASC_1__TGS01-22__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Idiomarina NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS01-22__bin.24 98.41329592 0.686813187 112 3088518 43.06 40957 SAMN40695624 SRR28523200 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS01-22__bin.24 MASTER_WP4_TEAGASC_1__TGS01-22__bin.24 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter aquimaris cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS01-22__bin.26 69.73536503 2.756653992 433 1723215 37.06 4719 SAMN40695624 SRR28523200 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS01-22__bin.26 MASTER_WP4_TEAGASC_1__TGS01-22__bin.26 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;Psychroflexus NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS01-22__bin.19 90.57820481 4.74877451 391 2553850 61.55 8710 SAMN40695624 SRR28523200 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.3 MASTER_WP4_TEAGASC_1__TGS01-22__bin.19 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS01-22__bin.37 68.96551724 0 59 1669372 62.19 52502 SAMN40695624 SRR28523200 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS01-22__bin.37 MASTER_WP4_TEAGASC_1__TGS01-22__bin.37 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium antiquum A cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS01-22__bin.35 88.54166667 0.3125 48 1186554 39.83 33578 SAMN40695624 SRR28523200 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008033155.1_ASM803315v1_genomic MASTER_WP4_TEAGASC_1__TGS01-22__bin.35 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Secundilactobacillus Secundilactobacillus malefermentans cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS01-22__bin.14 59.48275862 1.724137931 533 3928868 55.03 9770 SAMN40695624 SRR28523200 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS01-22__bin.14 MASTER_WP4_TEAGASC_1__TGS01-22__bin.14 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS02-22__bin.9 76.77069642 1.575747677 878 3156209 51.53 4010 SAMN40695625 SRR28523199 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967688__bin.2 MAG_122 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS02-22__bin.4 94.3 0.1 620 10394446 43.78 24530 SAMN40695625 SRR28523199 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS02-22__bin.4 MASTER_WP4_TEAGASC_1__TGS02-22__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Meyerozyma Meyerozyma guilliermondii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS03-22__bin.3 78.24223148 0.778985507 477 1903697 46.75 4357 SAMN40695626 SRR28523197 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_TEAGASC_1__TGS03-22__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS03-22__bin.5 98.30188679 1.226415094 228 2154739 35.59 14367 SAMN40695626 SRR28523197 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS03-22__bin.7 98.37662338 0.763760049 145 1858584 36.34 21499 SAMN40695626 SRR28523197 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 MASTER_WP4_TEAGASC_1__TGS03-22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS03-22__bin.2 72.5 0.3 2223 9274192 34.97 4844 SAMN40695626 SRR28523197 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS03-22__bin.2 MASTER_WP4_TEAGASC_1__TGS03-22__bin.2 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Candida inconspicua cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS04-22__bin.4 76.43678161 0 166 1976221 34.8 20692 SAMN40695627 SRR28523196 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS04-22__bin.3 100 0 55 1765916 39.19 45124 SAMN40695627 SRR28523196 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS04-22__bin.7 87.47039124 1.132075472 274 1787046 39.19 8447 SAMN40695627 SRR28523196 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MASTER_WP4_TEAGASC_1__TGS04-22__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS05-22__bin.4 55.99119706 0.087336245 142 821363 39.81 7037 SAMN40695628 SRR28523195 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS05-22__bin.2 99.4 0.4 228 12412358 33.34 155649 SAMN40695628 SRR28523195 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS05-22__bin.2 MASTER_WP4_TEAGASC_1__TGS05-22__bin.2 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Schwanniomyces Schwanniomyces polymorphus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS05-22__bin.3 80.3 0.2 4091 16498556 30.88 4705 SAMN40695628 SRR28523195 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS05-22__bin.3 MASTER_WP4_TEAGASC_1__TGS05-22__bin.3 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Ogataea Candida boidinii group 1 cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS06-22__bin.6 88.7023726 1.358695652 231 1520976 42.15 9202 SAMN40695629 SRR28523194 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_TEAGASC_1__TGS06-22__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS06-22__bin.8 100 1.79245283 51 2472729 34.87 142725 SAMN40695629 SRR28523194 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS06-22__bin.3 70.37037037 0 21 1032138 38.73 92874 SAMN40695629 SRR28523194 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967740__bin.10 LeechJ_2020__ERS3967740__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus parvulus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS06-22__bin.14 91.86147186 4.50965701 626 2977992 43.27 5988 SAMN40695629 SRR28523194 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS01-22__bin.24 MASTER_WP4_TEAGASC_1__TGS06-22__bin.14 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter aquimaris cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS06-22__bin.13 91.09138258 2.152777778 285 1763919 40.97 9052 SAMN40695629 SRR28523194 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008033155.1_ASM803315v1_genomic MASTER_WP4_TEAGASC_1__TGS01-22__bin.35 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Secundilactobacillus Secundilactobacillus malefermentans cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS06-22__bin.7 84.58976157 0.815217391 68 2078236 37.85 54485 SAMN40695629 SRR28523194 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS01-29__bin.2 MASTER_WP4_TEAGASC_1__TGS06-22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus hokkaidonensis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS06-22__bin.4 100 0.337837838 101 3808653 40.03 58762 SAMN40695629 SRR28523194 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811282__bin.3 FalardeauJ_2023__SRR20811282__bin.3 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS06-22__bin.15 93.3885142 2.407520948 685 4648964 42.43 9820 SAMN40695629 SRR28523194 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS06-22__bin.15 MASTER_WP4_TEAGASC_1__TGS06-22__bin.15 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Marinomonadaceae;Marinomonas Marinomonas polaris cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS06-22__bin.10 99.3 0 143 13934587 38.75 154523 SAMN40695629 SRR28523194 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCA_003243815.1_ASM324381v1_genomic GCA_003243815.1_ASM324381v1_genomic Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Spathaspora Candida sake cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS06-22__bin.9 89 0.1 540 8485846 32.86 28142 SAMN40695629 SRR28523194 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS06-22__bin.9 MASTER_WP4_TEAGASC_1__TGS06-22__bin.9 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Saturnispora Saturnispora mendoncae cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS07-22__bin.1 50.45454545 0.284090909 11 1132283 34.83 191139 SAMN40695630 SRR28523193 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS07-22__bin.7 83.37719298 1.973684211 637 2345612 70.12 4222 SAMN40695630 SRR28523193 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-22__bin.20 MASTER_WP4_TEAGASC_1__TGS07-22__bin.7 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Kocuria Kocuria sp025149945 cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS07-22__bin.5 98.1884058 1.977657005 85 3400429 62.41 67129 SAMN40695630 SRR28523193 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS07-22__bin.5 MASTER_WP4_TEAGASC_1__TGS07-22__bin.5 Pseudomonadota;Gammaproteobacteria;Nevskiales;Salinisphaeraceae;Salinisphaera NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS07-22__bin.3 65 0.5 4078 21136116 59.67 6404 SAMN40695630 SRR28523193 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS07-22__bin.3 MASTER_WP4_TEAGASC_1__TGS07-22__bin.3 Basidiomycota;Tremellomycetes;Trichosporonales;Trichosporonaceae;Trichosporon Trichosporon asahii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS07-22__bin.6 67.6 0.1 355 7143874 34.69 29566 SAMN40695630 SRR28523193 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS09-22__bin.4 MASTER_WP4_TEAGASC_1__TGS09-22__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Yamadazyma Yamadazyma triangularis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS07-22__bin.2 90.4 0.2 51 7696671 49.49 267109 SAMN40695630 SRR28523193 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS07-22__bin.2 MASTER_WP4_TEAGASC_1__TGS07-22__bin.2 Ascomycota;Saccharomycetes;Saccharomycetales;Trichomonascaceae;Wickerhamiella Wickerhamiella sorbophila cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS08-22__bin.6 88.32978292 0.880503145 181 2145126 34.81 20364 SAMN40695631 SRR28523192 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS08-22__bin.2 100 0 52 1732921 39.23 45124 SAMN40695631 SRR28523192 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS08-22__bin.3 77.56116859 1.603773585 239 1475991 39.11 6743 SAMN40695631 SRR28523192 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MASTER_WP4_TEAGASC_1__TGS08-22__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS08-22__bin.8 94.9 0.1 275 11165634 36.27 83283 SAMN40695631 SRR28523192 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS09-22__bin.1 72.4137931 0 326 1870353 34.92 7636 SAMN40695632 SRR28523191 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS09-22__bin.2 92.14339069 0.880503145 180 2109636 35.49 18522 SAMN40695632 SRR28523191 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS09-22__bin.4 93.6 0 394 10113083 33.72 39630 SAMN40695632 SRR28523191 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS09-22__bin.4 MASTER_WP4_TEAGASC_1__TGS09-22__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Yamadazyma Yamadazyma triangularis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS11-22__bin.1 77.19435737 3.448275862 421 1840190 34.69 5224 SAMN40695633 SRR28523190 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_TEAGASC_1__TGS11-22__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS11-22__bin.24 66.65453663 0.145560408 92 1111789 40.01 18761 SAMN40695633 SRR28523190 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS11-22__bin.6 82.95198049 1.965923984 593 2260962 71.17 4432 SAMN40695633 SRR28523190 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB16-22__bin.17 MASTER_WP4_TEAGASC_1__TGS11-22__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia Nesterenkonia halobia cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS11-22__bin.14 93.41085271 1.162790698 502 3249757 63.94 8529 SAMN40695633 SRR28523190 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_90__bin.4 MASTER_WP4_TEAGASC_1__TGS11-22__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sandarakinum A cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS11-22__bin.5 99.42965779 0.780468281 151 4064301 37.28 49657 SAMN40695633 SRR28523190 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS11-22__bin.5 MASTER_WP4_TEAGASC_1__TGS11-22__bin.5 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;Salegentibacter NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS11-22__bin.15 94.80122324 3.147298675 255 2510174 65.61 15977 SAMN40695633 SRR28523190 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q07-22__bin.19 MASTER_WP4_TEAGASC_1__TGS11-22__bin.15 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia Nesterenkonia koreensis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS11-22__bin.3 75.17241379 0 278 2662267 61.3 12932 SAMN40695633 SRR28523190 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.3 MASTER_WP4_TEAGASC_1__TGS11-22__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS11-22__bin.10 95.2758216 2.142018779 85 3531458 66.48 77463 SAMN40695633 SRR28523190 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS11-22__bin.10 MASTER_WP4_TEAGASC_1__TGS11-22__bin.10 Pseudomonadota;Gammaproteobacteria;Nevskiales;Salinisphaeraceae;Salinisphaera NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS11-22__bin.13 99.12889321 2.442528736 204 3206416 55.55 23022 SAMN40695633 SRR28523190 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS11-22__bin.13 MASTER_WP4_TEAGASC_1__TGS11-22__bin.13 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS11-22__bin.20 98.7625139 0.456389452 70 4901754 54.83 140879 SAMN40695633 SRR28523190 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS11-22__bin.20 MASTER_WP4_TEAGASC_1__TGS11-22__bin.20 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella titanicae cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS11-22__bin.17 79.48092213 1.122334456 305 2201408 47.33 8400 SAMN40695633 SRR28523190 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_406 MASTER_WP4_TEAGASC_1__TGS11-22__bin.17 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Idiomarina NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS11-22__bin.4 71.17358236 2.991143317 723 2619341 64.14 4122 SAMN40695633 SRR28523190 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS11-22__bin.4 MASTER_WP4_TEAGASC_1__TGS11-22__bin.4 Pseudomonadota;Gammaproteobacteria;Nevskiales;Salinisphaeraceae;Salinisphaera NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS11-22__bin.7 98.85984427 0.862068966 30 3462803 56.15 178284 SAMN40695633 SRR28523190 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS11-22__bin.7 MASTER_WP4_TEAGASC_1__TGS11-22__bin.7 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS13-22__bin.23 92.1572327 1.500449236 298 2443084 34.68 11869 SAMN40695635 SRR28523188 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS13-22__bin.22 73.44053041 0.809679767 154 1165035 39.37 8121 SAMN40695635 SRR28523188 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS13-22__bin.12 60.34482759 0.862068966 335 1591373 32.42 5784 SAMN40695635 SRR28523188 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_TEAGASC_1__TGS13-22__bin.12 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS13-22__bin.20 93.83116883 0 141 1689465 36.46 18080 SAMN40695635 SRR28523188 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS13-22__bin.27 95.4288499 1.26705653 105 3611298 70.68 53199 SAMN40695635 SRR28523188 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-29__bin.23 MASTER_WP4_FFoQSI_2__VB11-29__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium sp030457675 cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS13-22__bin.35 92.98001678 1.749492901 259 3227310 53.99 18550 SAMN40695635 SRR28523188 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811293__bin.2 MASTER_WP4_TEAGASC_1__TGS13-22__bin.35 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella citrativorans cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS13-22__bin.3 98.27586207 1.963601533 124 2539932 42.93 30108 SAMN40695635 SRR28523188 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB14-22__bin.50 MASTER_WP4_TEAGASC_1__TGS13-22__bin.3 Bacillota;Bacilli;Staphylococcales;Salinicoccaceae;Salinicoccus NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS13-22__bin.24 98.35234474 0.532319392 104 3025179 36.11 43961 SAMN40695635 SRR28523188 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We4_bin.full.28 We4_bin.full.28 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;Mesonia Mesonia profundi cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS13-22__bin.10 92.66860116 1.394169835 483 3557840 36.68 10563 SAMN40695635 SRR28523188 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS13-22__bin.10 MASTER_WP4_TEAGASC_1__TGS13-22__bin.10 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;Salegentibacter Salegentibacter sp017579965 cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS13-22__bin.7 98.86094198 1.318458418 59 4878659 54.59 144686 SAMN40695635 SRR28523188 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS13-22__bin.7 MASTER_WP4_TEAGASC_1__TGS13-22__bin.7 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS13-22__bin.32 59.9137931 0.086206897 11 2258104 53.43 270635 SAMN40695635 SRR28523188 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS13-22__bin.32 MASTER_WP4_TEAGASC_1__TGS13-22__bin.32 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter Marinobacter sp001858325 cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS13-22__bin.5 96.30604288 0.350877193 113 3410427 71.01 55889 SAMN40695635 SRR28523188 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS13-22__bin.5 MASTER_WP4_TEAGASC_1__TGS13-22__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS14-22__bin.52 51.69278997 0 90 1143294 35.06 26088 SAMN40695636 SRR28523186 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 KastmanEK_2016__CSB720__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS14-22__bin.26 97.74705581 0.529100529 64 1681387 37.77 60457 SAMN40695636 SRR28523186 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS14-22__bin.50 96.72315797 0.254730713 97 1639787 39.15 26472 SAMN40695636 SRR28523186 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS14-22__bin.31 95 1.949685535 83 1992560 40.25 35533 SAMN40695636 SRR28523186 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 MASTER_WP4_TEAGASC_1__TGS14-22__bin.31 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS14-22__bin.41 92.51054981 0.660377358 174 2096815 35.53 20398 SAMN40695636 SRR28523186 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS14-22__bin.40 75.38973923 1.078869048 32 3714925 55.6 209555 SAMN40695636 SRR28523186 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS08-29__bin.64 MASTER_WP4_TEAGASC_1__TGS14-22__bin.40 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Serratia Serratia liquefaciens cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS14-22__bin.11 94.90740741 3.128787879 457 2714678 32.7 8167 SAMN40695636 SRR28523186 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS14-22__bin.23 93.07170543 1.259689922 395 3174374 63.17 12252 SAMN40695636 SRR28523186 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 MASTER_WP4_TEAGASC_1__TGS14-22__bin.23 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS14-22__bin.36 91.22148262 0 34 1440483 39.42 70637 SAMN40695636 SRR28523186 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MASTER_WP4_TEAGASC_1__TGS14-22__bin.36 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS14-22__bin.8 99.09505933 0.862068966 34 3878873 52.52 193493 SAMN40695636 SRR28523186 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS04-29__bin.9 MASTER_WP4_TEAGASC_1__TGS14-22__bin.8 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella sp030440445 cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS14-22__bin.35 96.13259669 1.104972376 50 2059908 36.7 64407 SAMN40695636 SRR28523186 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308520__bin.4 YouL_2022__SRR13308520__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS14-22__bin.34 91.00877193 0.76754386 393 2613242 70.8 9131 SAMN40695636 SRR28523186 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB16-22__bin.7 MASTER_WP4_TEAGASC_1__TGS14-22__bin.34 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Kocuria Kocuria salsicia cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS14-22__bin.14 97.21745269 1.808608059 94 2932692 45.12 51025 SAMN40695636 SRR28523186 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 180 MacoriG_2019__CS_R32__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter namhaensis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS14-22__bin.29 93.70915033 3.938471941 1011 5253451 34.82 7045 SAMN40695636 SRR28523186 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS14-22__bin.29 MASTER_WP4_TEAGASC_1__TGS14-22__bin.29 Bacteroidota;Bacteroidia;Flavobacteriales;Weeksellaceae;Chryseobacterium Chryseobacterium oncorhynchi cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS14-22__bin.12 95.51853424 1.315789474 53 3394240 59.58 106694 SAMN40695636 SRR28523186 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS14-22__bin.12 MASTER_WP4_TEAGASC_1__TGS14-22__bin.12 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Kushneria NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS14-22__bin.17 81.37931034 2.586206897 94 3369322 61.2 55167 SAMN40695636 SRR28523186 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS14-22__bin.17 MASTER_WP4_TEAGASC_1__TGS14-22__bin.17 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Kushneria NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS14-22__bin.58 53.60501567 0 515 2499302 43.06 5537 SAMN40695636 SRR28523186 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS14-22__bin.58 MASTER_WP4_TEAGASC_1__TGS14-22__bin.58 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter nivimaris B cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_TEAGASC_1__TGS14-22__bin.28 57.4 0.2 2630 8940988 38.76 3727 SAMN40695636 SRR28523186 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2574__bin.24 MASTER_WP4_CSIC_2__P2574__bin.24 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Candida Candida parapsilosis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__A-22__bin.2 84.95670996 0.216450216 74 1117053 51.18 31820 SAMN36689929 SRR25394968 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__A-22__bin.3 58.62068966 0 67 675155 36.34 14299 SAMN36689929 SRR25394968 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__A-22__bin.11 95.41198502 0 189 2365661 53.78 20217 SAMN36689929 SRR25394968 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__C-22__bin.5 MASTER_WP4_UNINA_2__C-22__bin.5 Bacillota;Bacilli;Bacillales;Anoxybacillaceae;Geobacillus Geobacillus stearothermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__A-22__bin.12 68.3 0.4 1153 7595341 35.32 9527 SAMN36689929 SRR25394968 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__A-22__bin.12 MASTER_WP4_UNINA_2__A-22__bin.12 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia norvegensis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__B-22__bin.6 51.60636307 0.800582242 91 772211 40.07 13142 SAMN36689932 SRR25394779 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__B-22__bin.2 80.0334514 0.452577725 216 1314778 36.29 8195 SAMN36689932 SRR25394779 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__B-22__bin.8 87.63134593 0.059031877 211 1210892 51.55 6598 SAMN36689932 SRR25394779 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__O-25.1__bin.29 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__B-22__bin.4 95.10134391 0.63969408 198 2349256 53.79 19031 SAMN36689932 SRR25394779 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__C-22__bin.5 MASTER_WP4_UNINA_2__C-22__bin.5 Bacillota;Bacilli;Bacillales;Anoxybacillaceae;Geobacillus Geobacillus stearothermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__B-22__bin.5 95.78146611 1.970954357 115 2138380 66.46 28067 SAMN36689932 SRR25394779 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__E-22__bin.8 MASTER_WP4_UNINA_2__E-22__bin.8 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Rhodocyclaceae;Tepidiphilus Tepidiphilus succinatimandens cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__B-22__bin.3 78.7 0.1 989 8791878 39.41 21994 SAMN36689932 SRR25394779 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. EBC_024.4 EBC_024.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces marxianus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__C-22__bin.6 50.45643585 0 52 817204 39.76 22512 SAMN36689935 SRR25395067 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__C-22__bin.5 97.68860353 0 163 2394810 53.74 23568 SAMN36689935 SRR25395067 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__C-22__bin.5 MASTER_WP4_UNINA_2__C-22__bin.5 Bacillota;Bacilli;Bacillales;Anoxybacillaceae;Geobacillus Geobacillus stearothermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__D-22__bin.7 63.79310345 0 17 1092142 36.73 90947 SAMN36689938 SRR25395302 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 GCF_019444005.1_ASM1944400v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__D-22__bin.6 93.78277154 0.760079313 190 2374609 53.78 18342 SAMN36689938 SRR25395302 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__C-22__bin.5 MASTER_WP4_UNINA_2__C-22__bin.5 Bacillota;Bacilli;Bacillales;Anoxybacillaceae;Geobacillus Geobacillus stearothermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__D-22__bin.15 89.0625 1.25 55 1459761 47.07 44380 SAMN36689938 SRR25395302 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001702155.1_ASM170215v1_genomic MASTER_WP4_UNINA_2__D-22__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Secundilactobacillus Secundilactobacillus paracollinoides cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__D-22__bin.10 97.5 1.5 400 11807198 32.21 56490 SAMN36689938 SRR25395302 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__F-22__bin.7 MASTER_WP4_UNINA_2__F-22__bin.7 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kazachstania Kazachstania unispora cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__D-22__bin.17 72.6 0.4 1021 8338182 39.31 21439 SAMN36689938 SRR25395302 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. EBC_024.4 EBC_024.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces marxianus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__E-22__bin.24 63.27586207 4.310344828 237 901284 51.81 4335 SAMN36689944 SRR25395295 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__E-22__bin.24 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__E-22__bin.12 70.68965517 0 121 1064337 36.49 11564 SAMN36689944 SRR25395295 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__E-22__bin.15 92.44528898 0 225 2307821 53.89 14807 SAMN36689944 SRR25395295 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__C-22__bin.5 MASTER_WP4_UNINA_2__C-22__bin.5 Bacillota;Bacilli;Bacillales;Anoxybacillaceae;Geobacillus Geobacillus stearothermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__E-22__bin.10 89.38751926 1.129943503 369 1858346 68.57 6462 SAMN36689944 SRR25395295 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_58__bin.5 MASTER_WP4_UNINA_2__E-22__bin.10 Deinococcota;Deinococci;Deinococcales;Thermaceae;Thermus Thermus parvatiensis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__E-22__bin.8 95.59704933 0.844798719 139 1940040 66.71 25116 SAMN36689944 SRR25395295 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__E-22__bin.8 MASTER_WP4_UNINA_2__E-22__bin.8 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Rhodocyclaceae;Tepidiphilus Tepidiphilus succinatimandens cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__E-22__bin.3 94.66438579 0.776179405 330 3953431 58.45 16429 SAMN36689944 SRR25395295 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__E-22__bin.3 MASTER_WP4_UNINA_2__E-22__bin.3 Bacillota;Bacilli;Paenibacillales;Paenibacillaceae;Cohnella Cohnella laeviribosi cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__E-22__bin.7 92.74193548 1.331285202 66 3879450 59.23 98161 SAMN36689944 SRR25395295 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__E-22__bin.7 MASTER_WP4_UNINA_2__E-22__bin.7 Bacillota;Bacilli;Brevibacillales;Brevibacillaceae;Brevibacillus Brevibacillus thermoruber cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__F-22__bin.16 90.45138889 0.46875 35 1291932 42.5 68804 SAMN36689947 SRR25395292 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__F-22__bin.4 92.95138889 0.46875 95 1805115 41.86 28686 SAMN36689947 SRR25395292 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__F-22__bin.1 81.84991274 0 26 1785846 36.92 161901 SAMN36689947 SRR25395292 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 MASTER_WP4_UNINA_2__F-22__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus ghanensis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__F-22__bin.2 87.49479167 2.03125 279 2391105 46.1 10845 SAMN36689947 SRR25395292 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_96__bin.15 DeFilippisF_xxxx__DF_96__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parafarraginis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__F-22__bin.19 53.44827586 0 62 603377 35.88 14524 SAMN36689947 SRR25395292 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__F-22__bin.18 97.49197432 0.561797753 195 2388348 53.74 18827 SAMN36689947 SRR25395292 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__C-22__bin.5 MASTER_WP4_UNINA_2__C-22__bin.5 Bacillota;Bacilli;Bacillales;Anoxybacillaceae;Geobacillus Geobacillus stearothermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__F-22__bin.15 89.1 0 1000 9704985 39.58 14035 SAMN36689947 SRR25395292 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. EBC_024.4 EBC_024.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces marxianus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__F-22__bin.7 97.5 1.4 366 11829593 32.23 62567 SAMN36689947 SRR25395292 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__F-22__bin.7 MASTER_WP4_UNINA_2__F-22__bin.7 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kazachstania Kazachstania unispora cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__I-22__bin.13 56.47743814 0.291120815 56 892971 40.07 22849 SAMN36689952 SRR25394944 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__I-22__bin.3 79.84576703 1.257861635 365 1532476 40.61 4902 SAMN36689952 SRR25394944 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 MASTER_WP4_UNINA_2__I-22__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__I-22__bin.16 79.39293598 1.986754967 322 1773014 35.65 7157 SAMN36689952 SRR25394944 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 MASTER_WP4_UNINA_2__I-22__bin.16 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__I-22__bin.6 67.24137931 3.448275862 667 2441174 41.67 4017 SAMN36689952 SRR25394944 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-26__bin.7 MASTER_WP4_UNINA_2__I-22__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter johnsonii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__I-22__bin.4 59.48275862 1.724137931 720 3219771 53.65 5253 SAMN36689952 SRR25394944 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF84__bin.30 MASTER_WP4_UNINA_2__I-22__bin.4 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Lelliottia Lelliottia amnigena cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__M-22__bin.10 95.23809524 0.264550265 81 1582969 37.98 39789 SAMN36689955 SRR25394940 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__M-22__bin.29 55.16739447 0 34 877843 39.46 39429 SAMN36689955 SRR25394940 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__M-22__bin.16 81.25004578 1.992001231 535 1873182 71.25 3890 SAMN36689955 SRR25394940 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q02-23__bin.9 MASTER_WP4_UNINA_2__M-22__bin.16 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium lacticum cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__M-22__bin.17 96.72955975 3.839336764 203 2437666 35.49 20791 SAMN36689955 SRR25394940 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__M-22__bin.9 55.17241379 0 38 572053 50.97 18193 SAMN36689955 SRR25394940 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__M-28__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__M-22__bin.15 92.50314465 3.72327044 331 2020802 36.5 7991 SAMN36689955 SRR25394940 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__V-25__bin.15 MASTER_WP4_UNINA_2__V-25__bin.15 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A plantarum A cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__M-22__bin.20 51.72413793 0 42 425642 36.32 14791 SAMN36689955 SRR25394940 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__M-22__bin.27 94.70198675 1.434878587 176 2321469 35.5 23150 SAMN36689955 SRR25394940 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB07-22__bin.2 MASTER_WP4_FFoQSI_3__VB07-22__bin.2 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus muriaticus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__M-22__bin.1 69.20567376 0 2 1322697 67.99 886727 SAMN36689955 SRR25394940 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__N-22__bin.3 MASTER_WP4_UNINA_2__N-22__bin.3 Halobacteriota;Halobacteria;Halobacteriales;Halobacteriaceae;Halobacterium Halobacterium salinarum cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__M-22__bin.2 99.06382979 0.425531915 55 2146719 67.15 70927 SAMN36689955 SRR25394940 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__N-22__bin.10 MASTER_WP4_UNINA_2__N-22__bin.10 Halobacteriota;Halobacteria;Halobacteriales;Halobacteriaceae;Halarchaeum Halarchaeum salinum cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__N-22__bin.16 50.78394677 0.436681223 64 791285 39.79 20411 SAMN36689958 SRR25394937 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__N-22__bin.18 93.97186147 0.292207792 186 1484604 50.89 11285 SAMN36689958 SRR25394937 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__N-22__bin.13 56.89655172 0 93 985198 36.05 15313 SAMN36689958 SRR25394937 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__N-22__bin.8 53.44827586 0 284 1514769 61.77 6678 SAMN36689958 SRR25394937 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_023061185.1_ASM2306118v1_genomic MASTER_WP4_UNINA_2__O-29__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter beijerinckii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__N-22__bin.3 97.71631206 0 3 1986041 67.96 1096275 SAMN36689958 SRR25394937 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__N-22__bin.3 MASTER_WP4_UNINA_2__N-22__bin.3 Halobacteriota;Halobacteria;Halobacteriales;Halobacteriaceae;Halobacterium Halobacterium salinarum cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__N-22__bin.10 99.14893617 0.425531915 60 2164408 67.12 70293 SAMN36689958 SRR25394937 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__N-22__bin.10 MASTER_WP4_UNINA_2__N-22__bin.10 Halobacteriota;Halobacteria;Halobacteriales;Halobacteriaceae;Halarchaeum Halarchaeum salinum cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__N-22__bin.19 64.6 0.3 2016 8313624 36.39 4491 SAMN36689958 SRR25394937 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__N-22__bin.19 MASTER_WP4_UNINA_2__N-22__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;unknown;unknown unknown cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__N-22__bin.20 91.4 0.1 42 8553081 48.77 307417 SAMN36689958 SRR25394937 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__N-22__bin.20 MASTER_WP4_UNINA_2__N-22__bin.20 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;unknown unknown cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__N-22__bin.5 98.8 0.7 438 11242130 38.79 80144 SAMN36689958 SRR25394937 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2246_73323__bin.19 MASTER_WP4_CSIC_1__P2246_73323__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces lactis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__N-22__bin.11 69.7 0.6 2347 9723002 44.44 4665 SAMN36689958 SRR25394937 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. BertuzziAS_2018__ERS2032125__bin.3 MASTER_WP4_UNINA_2__N-22__bin.11 Ascomycota;Saccharomycetes;Saccharomycetales;Phaffomycetaceae;Cyberlindnera Cyberlindnera jadinii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__O-22__bin.3 96.59090909 0.568181818 39 2244536 34.98 123722 SAMN36689961 SRR25394934 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__O-26.1__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__O-22__bin.6 99.86772487 1.322751323 172 1929061 37.7 35209 SAMN36689961 SRR25394934 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__O-22__bin.13 54.39748388 0.232896652 112 813264 39.85 10003 SAMN36689961 SRR25394934 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__O-22__bin.8 56.92640693 0.12987013 31 753333 51.13 37938 SAMN36689961 SRR25394934 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__P-22__bin.4 53.15928691 0.28202329 65 833393 40.25 19059 SAMN36689964 SRR25395510 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__P-22__bin.11 83.78870674 0.627240143 161 1132799 53.43 8937 SAMN36689964 SRR25395510 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 MASTER_WP4_UNINA_2__P-22__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__P-22__bin.12 98.9375 0.4375 54 2206282 43.85 53249 SAMN36689964 SRR25395510 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653155__bin.1 LandisEA_2021__SRS5653155__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__P-22__bin.8 98.36956522 1.630434783 84 1826973 48.43 38017 SAMN36689964 SRR25395510 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__P-22__bin.8 MASTER_WP4_UNINA_2__P-22__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus panis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__P-22__bin.9 92.4168319 0.70482549 325 2197278 53.92 9225 SAMN36689964 SRR25395510 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__C-22__bin.5 MASTER_WP4_UNINA_2__C-22__bin.5 Bacillota;Bacilli;Bacillales;Anoxybacillaceae;Geobacillus Geobacillus stearothermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__P-22__bin.13 79.52898551 0 25 1967712 47 143282 SAMN36689964 SRR25395510 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__P-22__bin.13 MASTER_WP4_UNINA_2__P-22__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus chiayiensis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__P-22__bin.7 62.71333519 0.674157303 429 1211853 42.21 2994 SAMN36689964 SRR25395510 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__P-22__bin.7 MASTER_WP4_UNINA_2__P-22__bin.7 Bacillota;Bacilli;Bacillales;Anoxybacillaceae;Anoxybacillus NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__P-22__bin.15 71.8 0 1129 8546132 39.18 18764 SAMN36689964 SRR25395510 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. EBC_024.4 EBC_024.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces marxianus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__T-22__bin.8 94.04657933 1.277812435 163 1596321 39.35 14640 SAMN36689995 SRR25395476 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__T-22__bin.24 89.4460357 3.969341161 491 2974851 41.52 7941 SAMN36689995 SRR25395476 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-26__bin.7 MASTER_WP4_UNINA_2__T-22__bin.24 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter johnsonii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__T-22__bin.16 93.19581281 1.50862069 108 2607158 63.2 44235 SAMN36689995 SRR25395476 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2134_73322__bin.24 MASTER_WP4_UNINA_2__T-22__bin.16 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella jeotgali cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__T-22__bin.5 95.99426322 1.457541191 227 2496367 43.08 16964 SAMN36689995 SRR25395476 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2134_73322__bin.21 MASTER_WP4_UNINA_2__T-22__bin.5 Bacteroidota;Bacteroidia;Flavobacteriales;Flavobacteriaceae;JAJYSO01 NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__T-22__bin.9 98.07344973 0.662251656 169 2049163 35.8 19524 SAMN36689995 SRR25395476 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB07-22__bin.2 MASTER_WP4_FFoQSI_3__VB07-22__bin.2 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus muriaticus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__T-22__bin.22 59.57446809 0 11 1371748 67.99 153459 SAMN36689995 SRR25395476 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__N-22__bin.3 MASTER_WP4_UNINA_2__T-22__bin.22 Halobacteriota;Halobacteria;Halobacteriales;Halobacteriaceae;Halobacterium Halobacterium salinarum cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__T-22__bin.15 92.7852349 2.348993289 356 2485542 48.8 9252 SAMN36689995 SRR25395476 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__T-22__bin.15 MASTER_WP4_UNINA_2__T-22__bin.15 Bacillota;Bacilli;Bacillales_H;Marinococcaceae;Marinococcus Marinococcus sp947493875 cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__T-22__bin.12 88.31813576 3.30754352 276 2601552 67.07 17401 SAMN36689995 SRR25395476 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__T-22__bin.12 MASTER_WP4_UNINA_2__T-22__bin.12 Halobacteriota;Halobacteria;Halobacteriales;Halococcaceae;Halococcus NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__T-22__bin.13 80.57403306 4.901008371 386 2293199 69.1 7820 SAMN36689995 SRR25395476 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__T-22__bin.13 MASTER_WP4_UNINA_2__T-22__bin.13 Halobacteriota;Halobacteria;Halobacteriales;Haloferacaceae;Halolamina NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__T-22__bin.17 96.38297872 1.276595745 75 2962278 67.9 70870 SAMN36689995 SRR25395476 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__T-22__bin.17 MASTER_WP4_UNINA_2__T-22__bin.17 Halobacteriota;Halobacteria;Halobacteriales;Halobacteriaceae;Halocalculus Halocalculus aciditolerans cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__T-22__bin.25 99.37533949 0.126742712 18 3174383 65.01 479005 SAMN36689995 SRR25395476 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__T-22__bin.25 MASTER_WP4_UNINA_2__T-22__bin.25 Halobacteriota;Halobacteria;Halobacteriales;Haloferacaceae;Halopelagius Halopelagius inordinatus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__T-22__bin.30 71.25714286 0.415384615 34 3059719 60.91 147763 SAMN36689995 SRR25395476 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__T-22__bin.30 MASTER_WP4_UNINA_2__T-22__bin.30 Halobacteriota;Halobacteria;Halobacteriales;Haloarculaceae;Haloarcula Haloarcula sp030848575 cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__T-22__bin.4 62.04255319 0 12 1722532 69.36 215912 SAMN36689995 SRR25395476 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__T-22__bin.4 MASTER_WP4_UNINA_2__T-22__bin.4 Halobacteriota;Halobacteria;Halobacteriales;Halobacteriaceae;Halarchaeum Halarchaeum grantii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__U-22__bin.8 98.48484848 1.298701299 184 1684544 36.56 13736 SAMN36689998 SRR25395473 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746979__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__U-22__bin.6 69.54536208 1.062314878 249 949407 50.98 4395 SAMN36689998 SRR25395473 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_2__U-22__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__U-22__bin.4 98.14814815 0.068587106 76 1916724 38.53 56710 SAMN36689998 SRR25395473 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967740__bin.10 LeechJ_2020__ERS3967740__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus parvulus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__U-22__bin.1 98.4375 0 97 2179724 44.53 36917 SAMN36689998 SRR25395473 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__U-22__bin.11 98.36956522 0.815217391 101 1856481 39.82 26424 SAMN36689998 SRR25395473 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_7__bin.8 DeFilippisF_xxxx__DF_7__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus wasatchensis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__U-22__bin.3 86.16751176 3.206447188 463 2682508 46.72 7281 SAMN36689998 SRR25395473 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YasirM_2022__SRR18335011__bin.1 MASTER_WP4_UNINA_2__U-22__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus pentosus cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__U-22__bin.13 96.71052632 0 97 3419106 68.9 69532 SAMN36689998 SRR25395473 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. C-R09.bin.5 MASTER_WP4_UNINA_2__U-22__bin.13 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Acidipropionibacterium Acidipropionibacterium acidipropionici cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__U-22__bin.5 95.28795812 1.308900524 168 2049769 39.18 18952 SAMN36689998 SRR25395473 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_900116935.1_Chromosome_genomic GCF_900116935.1_Chromosome_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus Ligilactobacillus acidipiscis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__U-22__bin.12 100 0.45045045 20 3796396 42.64 232557 SAMN36689998 SRR25395473 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__U-22__bin.12 MASTER_WP4_UNINA_2__U-22__bin.12 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Celerinatantimonadaceae;Celerinatantimonas NA cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__U-22__bin.7 92.2 0.2 1555 12169231 33.39 11160 SAMN36689998 SRR25395473 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__U-22__bin.7 MASTER_WP4_UNINA_2__U-22__bin.7 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia unknown cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__V-22__bin.19 73.80355277 3.448275862 299 2325605 34.51 14996 SAMN36690001 SRR25395470 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_411 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__V-22__bin.5 82.25964199 4.278887182 401 1467329 38.05 4269 SAMN36690001 SRR25395470 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_UNINA_2__V-22__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__V-22__bin.9 62.22570533 3.448275862 395 1362552 42.02 3780 SAMN36690001 SRR25395470 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-26__bin.7 MASTER_WP4_UNINA_2__V-22__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter johnsonii cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MASTER_WP4_UNINA_2__V-22__bin.20 69.58137134 1.346982759 466 1708319 63.92 3894 SAMN36690001 SRR25395470 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2134_73322__bin.24 MASTER_WP4_UNINA_2__V-22__bin.20 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella jeotgali cheese brine cheese_brine Animal Dairy milk cheese liquid low lactic mesophilic 1-1.5 months MacoriG_2019__CS_16__bin.2 99.44 0.14 68 2749601 32.9 65085 SAMEA5662706 ERR3340753 Italy PRJEB32768 ERP115482 NCBI Pasolli E, De Filippis F, Mauriello IE, Cumbo F, Walsh AM, Leech J, Cotter PD, Segata N, Ercolini D. Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat Commun. 2020 May 25;11(1):2610. doi: 10.1038/s41467-020-16438-8. YangC_2021__SRR13259378__bin.4 MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum cheese blue cheese_blue_cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MacoriG_2019__CS_R33__bin.1 94.56 0.32 163 3339043 40.55 31616 SAMEA5662756 ERR3340808 Italy PRJEB32768 ERP115482 NCBI Pasolli E, De Filippis F, Mauriello IE, Cumbo F, Walsh AM, Leech J, Cotter PD, Segata N, Ercolini D. Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat Commun. 2020 May 25;11(1):2610. doi: 10.1038/s41467-020-16438-8. MacoriG_2019__CS_R33__bin.1 MacoriG_2019__CS_R33__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio hibernica cheese brie cheese_brie Animal Dairy milk cheese semi-solid low lactic mesophilic 1-1.5 months MacoriG_2019__CS_R46__bin.2 98.8 0.54 257 3124579 41.97 18025 SAMEA5662772 ERR3340815 Italy PRJEB32768 ERP115482 NCBI Pasolli E, De Filippis F, Mauriello IE, Cumbo F, Walsh AM, Leech J, Cotter PD, Segata N, Ercolini D. Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat Commun. 2020 May 25;11(1):2610. doi: 10.1038/s41467-020-16438-8. 181 181 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 cheese brie cheese_brie Animal Dairy milk cheese semi-solid low lactic mesophilic 1-1.5 months MacoriG_2019__CS_R46__bin.3 100 1.66 83 4788121 42.48 86810 SAMEA5662772 ERR3340815 Italy PRJEB32768 ERP115482 NCBI Pasolli E, De Filippis F, Mauriello IE, Cumbo F, Walsh AM, Leech J, Cotter PD, Segata N, Ercolini D. Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat Commun. 2020 May 25;11(1):2610. doi: 10.1038/s41467-020-16438-8. MAG_72 MAG_72 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Marinomonadaceae;Marinomonas Marinomonas sp012726345 cheese brie cheese_brie Animal Dairy milk cheese semi-solid low lactic mesophilic 1-1.5 months MacoriG_2019__CS_R46__bin.9 100 0.86 109 3488561 54.27 47084 SAMEA5662772 ERR3340815 Italy PRJEB32768 ERP115482 NCBI Pasolli E, De Filippis F, Mauriello IE, Cumbo F, Walsh AM, Leech J, Cotter PD, Segata N, Ercolini D. Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat Commun. 2020 May 25;11(1):2610. doi: 10.1038/s41467-020-16438-8. FalardeauJ_2023__SRR20811293__bin.2 WalshAM_2020__ERS3466789__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella citrativorans cheese brie cheese_brie Animal Dairy milk cheese semi-solid low lactic mesophilic 1-1.5 months MacoriG_2019__CS_9__bin.3 98.75 0.21 92 4937493 51.84 89604 SAMEA5662726 ERR3340800 Italy PRJEB32768 ERP115482 NCBI Pasolli E, De Filippis F, Mauriello IE, Cumbo F, Walsh AM, Leech J, Cotter PD, Segata N, Ercolini D. Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat Commun. 2020 May 25;11(1):2610. doi: 10.1038/s41467-020-16438-8. MAG_426 MAG_426 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Citrobacter Citrobacter freundii cheese cheddar cheese_cheddar Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MacoriG_2019__CS_R7__bin.2 98.87 0.48 123 3712382 53.84 39626 SAMEA5662734 ERR3340822 Italy PRJEB32768 ERP115482 NCBI Pasolli E, De Filippis F, Mauriello IE, Cumbo F, Walsh AM, Leech J, Cotter PD, Segata N, Ercolini D. Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat Commun. 2020 May 25;11(1):2610. doi: 10.1038/s41467-020-16438-8. We6_bin.full.31 MacoriG_2019__CS_R7__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella casei cheese cheddar cheese_cheddar Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MacoriG_2019__CS_R7__bin.6 93.25 1.19 323 3140598 67.61 12457 SAMEA5662734 ERR3340822 Italy PRJEB32768 ERP115482 NCBI Pasolli E, De Filippis F, Mauriello IE, Cumbo F, Walsh AM, Leech J, Cotter PD, Segata N, Ercolini D. Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat Commun. 2020 May 25;11(1):2610. doi: 10.1038/s41467-020-16438-8. MASTER_WP4_TEAGASC_1__TGS11-30__bin.13 MASTER_WP4_TEAGASC_1__TGS11-30__bin.13 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium NA cheese cheddar cheese_cheddar Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MacoriG_2019__CS_R2__bin.9 95.84 0.69 172 2652162 47.69 20330 SAMEA5662729 ERR3340804 Italy PRJEB32768 ERP115482 NCBI Pasolli E, De Filippis F, Mauriello IE, Cumbo F, Walsh AM, Leech J, Cotter PD, Segata N, Ercolini D. Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat Commun. 2020 May 25;11(1):2610. doi: 10.1038/s41467-020-16438-8. MASTER_WP4_CSIC_2__P2584__bin.5 MAG_430 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter celer hard cheese cheese_hard_cheese Animal Dairy milk cheese solid low lactic mesophilic 6-12 months MacoriG_2019__CS_R4__bin.5 86.71 0.98 432 4449703 54.77 13600 SAMEA5662757 ERR3340810 Italy PRJEB32768 ERP115482 NCBI Pasolli E, De Filippis F, Mauriello IE, Cumbo F, Walsh AM, Leech J, Cotter PD, Segata N, Ercolini D. Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat Commun. 2020 May 25;11(1):2610. doi: 10.1038/s41467-020-16438-8. MAG_440 MAG_440 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Advenella Advenella sp003533245 hard cheese cheese_hard_cheese Animal Dairy milk cheese solid low lactic mesophilic 6-12 months MacoriG_2019__CS_R4__bin.6 97.03 0.44 158 2751886 55.54 27416 SAMEA5662757 ERR3340810 Italy PRJEB32768 ERP115482 NCBI Pasolli E, De Filippis F, Mauriello IE, Cumbo F, Walsh AM, Leech J, Cotter PD, Segata N, Ercolini D. Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat Commun. 2020 May 25;11(1):2610. doi: 10.1038/s41467-020-16438-8. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei hard cheese cheese_hard_cheese Animal Dairy milk cheese solid low lactic mesophilic 6-12 months MacoriG_2019__CS_R4__bin.7 99.28 0 90 3969171 37.78 70618 SAMEA5662757 ERR3340810 Italy PRJEB32768 ERP115482 NCBI Pasolli E, De Filippis F, Mauriello IE, Cumbo F, Walsh AM, Leech J, Cotter PD, Segata N, Ercolini D. Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat Commun. 2020 May 25;11(1):2610. doi: 10.1038/s41467-020-16438-8. MacoriG_2019__CS_R4__bin.7 MacoriG_2019__CS_R4__bin.7 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Proteus Proteus hauseri B hard cheese cheese_hard_cheese Animal Dairy milk cheese solid low lactic mesophilic 6-12 months MacoriG_2019__CS_R42__bin.6 99.57 0.74 141 4573201 44.03 54366 SAMEA5662732 ERR3340812 Italy PRJEB32768 ERP115482 NCBI Pasolli E, De Filippis F, Mauriello IE, Cumbo F, Walsh AM, Leech J, Cotter PD, Segata N, Ercolini D. Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat Commun. 2020 May 25;11(1):2610. doi: 10.1038/s41467-020-16438-8. MacoriG_2019__CS_R42__bin.6 MacoriG_2019__CS_R42__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Vibrionaceae;Vibrio Vibrio toranzoniae cheese cheese_mild Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MacoriG_2019__CS_R32__bin.3 98.51 0.27 73 2730113 45.16 51513 SAMEA5662755 ERR3340807 Italy PRJEB32768 ERP115482 NCBI Pasolli E, De Filippis F, Mauriello IE, Cumbo F, Walsh AM, Leech J, Cotter PD, Segata N, Ercolini D. Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat Commun. 2020 May 25;11(1):2610. doi: 10.1038/s41467-020-16438-8. 180 MacoriG_2019__CS_R32__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter namhaensis cheese cheese_smoked_cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MacoriG_2019__CS_40__bin.4 98.99 0.51 35 2914803 46.76 158021 SAMEA5662720 ERR3340780 Italy PRJEB32768 ERP115482 NCBI Pasolli E, De Filippis F, Mauriello IE, Cumbo F, Walsh AM, Leech J, Cotter PD, Segata N, Ercolini D. Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat Commun. 2020 May 25;11(1):2610. doi: 10.1038/s41467-020-16438-8. MAG_406 MAG_406 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Idiomarina NA cheese curd cheese_stretchedcurd_cheese Animal Dairy milk cheese solid low lactic mesophilic 1-7 days MacoriG_2019__CS_2__bin.6 86.83 0.69 257 2352237 48.79 12061 SAMEA5662710 ERR3340757 Italy PRJEB32768 ERP115482 NCBI Pasolli E, De Filippis F, Mauriello IE, Cumbo F, Walsh AM, Leech J, Cotter PD, Segata N, Ercolini D. Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat Commun. 2020 May 25;11(1):2610. doi: 10.1038/s41467-020-16438-8. MAG_176 MAG_176 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter NA cheese tomme cheese_tomme Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MacoriG_2019__CS_R28__bin.1 92.57 0.43 622 5782600 68.05 12451 SAMEA5662754 ERR3340805 Italy PRJEB32768 ERP115482 NCBI Pasolli E, De Filippis F, Mauriello IE, Cumbo F, Walsh AM, Leech J, Cotter PD, Segata N, Ercolini D. Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat Commun. 2020 May 25;11(1):2610. doi: 10.1038/s41467-020-16438-8. WalshAM_2020__ERS3466771__bin.2 WalshAM_2020__ERS3466771__bin.2 Actinomycetota;Actinomycetes;Streptomycetales;Streptomycetaceae;Streptomyces NA cheese tomme cheese_tomme Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MacoriG_2019__CS_R28__bin.2 97.5 2.52 239 4345322 64.38 26276 SAMEA5662754 ERR3340805 Italy PRJEB32768 ERP115482 NCBI Pasolli E, De Filippis F, Mauriello IE, Cumbo F, Walsh AM, Leech J, Cotter PD, Segata N, Ercolini D. Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat Commun. 2020 May 25;11(1):2610. doi: 10.1038/s41467-020-16438-8. WalshAM_2020__ERS3466771__bin.3 WalshAM_2020__ERS3466771__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745485 cheese tomme cheese_tomme Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MacoriG_2019__CS_R30__bin.2 92.32 2.46 366 4062898 52.69 15398 SAMEA5662730 ERR3340806 Italy PRJEB32768 ERP115482 NCBI Pasolli E, De Filippis F, Mauriello IE, Cumbo F, Walsh AM, Leech J, Cotter PD, Segata N, Ercolini D. Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat Commun. 2020 May 25;11(1):2610. doi: 10.1038/s41467-020-16438-8. MASTER_WP4_TEAGASC_1__TGS04-29__bin.9 MAG_435 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella Vreelandella sp030440445 cheese tomme cheese_tomme Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MacoriG_2019__CS_R36__bin.1 98.09 1.09 231 4386181 48.13 26956 SAMEA5662731 ERR3340809 Italy PRJEB32768 ERP115482 NCBI Pasolli E, De Filippis F, Mauriello IE, Cumbo F, Walsh AM, Leech J, Cotter PD, Segata N, Ercolini D. Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat Commun. 2020 May 25;11(1):2610. doi: 10.1038/s41467-020-16438-8. FalardeauJ_2023__SRR20811137__bin.9 MacoriG_2019__CS_R36__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia paralvei cheese tomme cheese_tomme Animal Dairy milk cheese solid low lactic mesophilic 1-3 months MacoriG_2019__CS_R44__bin.13 94.68 0.58 484 3789778 69.67 9877 SAMEA5662759 ERR3340813 Italy PRJEB32768 ERP115482 NCBI Pasolli E, De Filippis F, Mauriello IE, Cumbo F, Walsh AM, Leech J, Cotter PD, Segata N, Ercolini D. Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat Commun. 2020 May 25;11(1):2610. doi: 10.1038/s41467-020-16438-8. 183 MacoriG_2019__CS_R44__bin.13 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium NA cheese tomme cheese_tomme Animal Dairy milk cheese solid low lactic mesophilic 1-3 months GCF_900289205.1_Le_suionicum_CECT_8484_Spades_Prokka_genomic 100 0.53 18 2069029 37.26 1245373 GCF_900289205.1_Le_suionicum_CECT_8484_Spades_Prokka_genomic GCF_900289205.1_Le_suionicum_CECT_8484_Spades_Prokka_genomic NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 MortensenS_xxxx__WK031-1-L-48h-03B2_S30__bin.1 MortensenS_xxxx__WK031-1-L-48h-03B2_S30__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc suionicum chicha chicha Plant Grain corn beverage liquid medium lactic mesophilic 3-7 days MAG_40 98.86 0.51 192 4574311 55.67 34661 ['SAMN09269773', 'SAMN09269774', 'SAMN09269775', 'SAMN09269778', 'SAMN09269779', 'SAMN09269777', 'SAMN09269776'] ['SRR7262867', 'SRR7262868', 'SRR7262871', 'SRR7262872', 'SRR7262876', 'SRR7262877', 'SRR7262878'] China PRJNA473190 SRP149765 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746854__bin.2 MAG_40 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter Enterobacter intestinihominis chilli paste chilli_paste Plant Vegetables_Aromatics chili pepper seasoning semi-solid none lactic mesophilic 2-3 weeks MAG_65 89.24 3.4 241 1838748 38.69 9816 ['SAMN09269773', 'SAMN09269774', 'SAMN09269775', 'SAMN09269778', 'SAMN09269779', 'SAMN09269777', 'SAMN09269776'] ['SRR7262867', 'SRR7262868', 'SRR7262871', 'SRR7262872', 'SRR7262876', 'SRR7262877', 'SRR7262878'] China PRJNA473190 SRP149765 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis chilli paste chilli_paste Plant Vegetables_Aromatics chili pepper seasoning semi-solid none lactic mesophilic 2-3 weeks MAG_71 86.38 0.24 272 1628306 37.3 7357 ['SAMN09269773', 'SAMN09269774', 'SAMN09269775', 'SAMN09269778', 'SAMN09269779', 'SAMN09269777', 'SAMN09269776'] ['SRR7262867', 'SRR7262868', 'SRR7262871', 'SRR7262872', 'SRR7262876', 'SRR7262877', 'SRR7262878'] China PRJNA473190 SRP149765 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. YasirM_2022__SRR18335001__bin.1 LiZ_2019__SRS3379169__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus ethanolidurans chilli paste chilli_paste Plant Vegetables_Aromatics chili pepper seasoning semi-solid none lactic mesophilic 2-3 weeks MAG_573 81.5 0.79 74 1403008 35.13 41691 ['SAMN09269773', 'SAMN09269774', 'SAMN09269775', 'SAMN09269778', 'SAMN09269779', 'SAMN09269777', 'SAMN09269776'] ['SRR7262867', 'SRR7262868', 'SRR7262871', 'SRR7262872', 'SRR7262876', 'SRR7262877', 'SRR7262878'] China PRJNA473190 SRP149765 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_UNINA_1__FI010_71775__bin.21 MASTER_WP4_UNINA_1__FI010_71775__bin.21 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus alimentarius chilli paste chilli_paste Plant Vegetables_Aromatics chili pepper seasoning semi-solid none lactic mesophilic 2-3 weeks MAG_574 61.39 1.34 696 2285240 44.81 3609 ['SAMN09269773', 'SAMN09269774', 'SAMN09269775', 'SAMN09269778', 'SAMN09269779', 'SAMN09269777', 'SAMN09269776'] ['SRR7262867', 'SRR7262868', 'SRR7262871', 'SRR7262872', 'SRR7262876', 'SRR7262877', 'SRR7262878'] China PRJNA473190 SRP149765 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FalardeauJ_2023__SRR20811279__bin.3 MAG_574 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum chilli paste chilli_paste Plant Vegetables_Aromatics chili pepper seasoning semi-solid none lactic mesophilic 2-3 weeks MAG_575 95.13 0.64 140 2315695 46.12 29610 ['SAMN09269773', 'SAMN09269774', 'SAMN09269775', 'SAMN09269778', 'SAMN09269779', 'SAMN09269777', 'SAMN09269776'] ['SRR7262867', 'SRR7262868', 'SRR7262871', 'SRR7262872', 'SRR7262876', 'SRR7262877', 'SRR7262878'] China PRJNA473190 SRP149765 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis chilli paste chilli_paste Plant Vegetables_Aromatics chili pepper seasoning semi-solid none lactic mesophilic 2-3 weeks MAG_576 97.62 5.32 453 4898402 55.37 16733 ['SAMN09269773', 'SAMN09269774', 'SAMN09269775', 'SAMN09269778', 'SAMN09269779', 'SAMN09269777', 'SAMN09269776'] ['SRR7262867', 'SRR7262868', 'SRR7262871', 'SRR7262872', 'SRR7262876', 'SRR7262877', 'SRR7262878'] China PRJNA473190 SRP149765 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746854__bin.2 MAG_576 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter Enterobacter intestinihominis chilli paste chilli_paste Plant Vegetables_Aromatics chili pepper seasoning semi-solid none lactic mesophilic 2-3 weeks MAG_577 72.72 3.93 746 2563367 39.75 3727 ['SAMN09269773', 'SAMN09269774', 'SAMN09269775', 'SAMN09269778', 'SAMN09269779', 'SAMN09269777', 'SAMN09269776'] ['SRR7262867', 'SRR7262868', 'SRR7262871', 'SRR7262872', 'SRR7262876', 'SRR7262877', 'SRR7262878'] China PRJNA473190 SRP149765 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_900116935.1_Chromosome_genomic LiZ_2019__SRS3379166__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus Ligilactobacillus acidipiscis chilli paste chilli_paste Plant Vegetables_Aromatics chili pepper seasoning semi-solid none lactic mesophilic 2-3 weeks MAG_578 94.31 3.51 160 2266329 51.76 22805 ['SAMN09269773', 'SAMN09269774', 'SAMN09269775', 'SAMN09269778', 'SAMN09269779', 'SAMN09269777', 'SAMN09269776'] ['SRR7262867', 'SRR7262868', 'SRR7262871', 'SRR7262872', 'SRR7262876', 'SRR7262877', 'SRR7262878'] China PRJNA473190 SRP149765 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LiZ_2019__SRS3379169__bin.2 LiZ_2019__SRS3379169__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus suantsaii chilli paste chilli_paste Plant Vegetables_Aromatics chili pepper seasoning semi-solid none lactic mesophilic 2-3 weeks MAG_579 78.54 8.62 522 4433834 54.9 13396 ['SAMN09269773', 'SAMN09269774', 'SAMN09269775', 'SAMN09269778', 'SAMN09269779', 'SAMN09269777', 'SAMN09269776'] ['SRR7262867', 'SRR7262868', 'SRR7262871', 'SRR7262872', 'SRR7262876', 'SRR7262877', 'SRR7262878'] China PRJNA473190 SRP149765 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_579 MAG_579 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Leclercia_A Leclercia A pneumoniae chilli paste chilli_paste Plant Vegetables_Aromatics chili pepper seasoning semi-solid none lactic mesophilic 2-3 weeks MAG_580 99.03 2.89 363 5266593 51.76 26357 ['SAMN09269773', 'SAMN09269774', 'SAMN09269775', 'SAMN09269778', 'SAMN09269779', 'SAMN09269777', 'SAMN09269776'] ['SRR7262867', 'SRR7262868', 'SRR7262871', 'SRR7262872', 'SRR7262876', 'SRR7262877', 'SRR7262878'] China PRJNA473190 SRP149765 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_426 MAG_580 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Citrobacter Citrobacter freundii chilli paste chilli_paste Plant Vegetables_Aromatics chili pepper seasoning semi-solid none lactic mesophilic 2-3 weeks MAG_12 75.44 0.86 907 2868851 46.44 3409 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. TomarS_2023__SRR15925267__bin.15 MAG_12 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus licheniformis liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_26 98.09 1.79 95 1674162 39.13 30047 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc citreum liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_30 54.4 5.5 951 3677296 45.17 4415 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_30 MAG_30 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus paralicheniformis liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_44 90.38 1.23 189 1648615 42.52 12646 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. CM_UNINA_FFOOD__FFOOD_425__bin.9 MAG_44 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_46 99.06 1.2 82 1752300 48.14 34442 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_46 MAG_46 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus panis A liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_54 95.83 3.27 126 1314780 36.46 15228 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. YasirM_2022__SRR18334997__bin.9 GCF_001436775.1_ASM143677v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus acetotolerans liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_60 98.91 0.83 79 1791522 53.44 59855 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_009428965.1_ASM942896v1_genomic GCF_009428965.1_ASM942896v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus pontis liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_69 95.13 8 817 3453065 37.54 4978 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_608 MAG_69 Bacillota;Bacilli;Bacillales_B;Caldibacillaceae;Caldifermentibacillus Caldifermentibacillus hisashii liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_75 85.83 4.05 511 1797745 53.41 3829 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_004010095.1_ASM401009v1_genomic MAG_75 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus hulanensis liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_108 58.62 3.45 496 1660753 45.23 3690 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FalardeauJ_2023__SRR20811279__bin.3 MAG_108 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_121 67.16 7.46 893 2394113 54.39 2791 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MortensenS_xxxx__WK027-1-L-48h-02I4_S14__bin.10 MAG_121 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter indonesiensis liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_132 66.27 9.79 510 2954163 37.52 6809 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MAG_132 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_134 74.38 4.86 508 1840236 43.33 4064 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LandisEA_2021__SRS5653333__bin.1 MAG_134 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_135 95.56 0.34 48 1571027 36.45 59218 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746979__bin.3 MAG_135 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_138 61.47 0.47 339 1022554 44.13 3303 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. CM_UNINA_FFOOD__FFOOD_245__bin.2 MAG_138 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_150 81.51 5.54 706 1978940 53.78 2902 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MortensenS_xxxx__WK032-1-L-48h-03B6_S34__bin.2 MAG_150 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter pasteurianus liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_179 90.03 3.23 329 1593556 37.12 5674 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. KharnaiorP_2023__SRR22859379__bin.8 DeFilippisF_xxxx__DF_7__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_187 63.53 1.88 536 1458325 53.3 2821 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_528 MAG_187 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus pantheris liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_192 97.67 0.46 207 1807870 42.56 13855 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. CM_UNINA_FFOOD__FFOOD_425__bin.9 MAG_192 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_193 92.34 3.67 677 3274874 37.6 5927 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_608 MAG_193 Bacillota;Bacilli;Bacillales_B;Caldibacillaceae;Caldifermentibacillus Caldifermentibacillus hisashii liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_198 83.3 3.08 461 1877112 53.45 4932 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_004010095.1_ASM401009v1_genomic MAG_198 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus hulanensis liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_504 71.03 0 235 1724561 37.05 10216 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. YasirM_2022__SRR18335001__bin.1 MAG_504 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus ethanolidurans liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_505 92.27 1.27 272 2100045 43.32 9929 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LandisEA_2021__SRS5653333__bin.1 MAG_505 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_506 87.36 3.87 290 2173492 43.67 9885 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LandisEA_2021__SRS5653152__bin.2 LandisEA_2021__SRS5653152__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Furfurilactobacillus Furfurilactobacillus milii liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_507 80 3.23 406 1754755 39.75 5016 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 MAG_507 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_508 91.25 5.42 169 2153565 44.47 17936 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. DeFilippisF_xxxx__DF_30__bin.3 LeechJ_2020__ERS3967735__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_509 66.29 2.15 191 1102238 44.93 6868 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LeechJ_2020__ERS3967691__bin.13 MAG_509 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella cibaria liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_510 53.09 1.72 483 2085468 34.78 5465 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_001434985.1_ASM143498v1_genomic MAG_510 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus paralimentarius liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_511 91.82 4.64 373 2332683 46.2 8184 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. DeFilippisF_xxxx__DF_96__bin.15 MAG_511 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parafarraginis liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_512 76.58 1.88 301 2890537 46.48 12705 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. TomarS_2023__SRR15925267__bin.15 TomarS_2023__SRR15925267__bin.15 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus licheniformis liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_513 70.97 1.43 163 1055258 46.41 8118 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_514 74.59 1.38 178 1378685 41.43 11777 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LeechJ_xxxx__AF68__bin.3 MAG_514 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus vaccinostercus liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_515 70.87 5.17 441 2255200 42.32 6387 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_515 MAG_515 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus sunkii liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_516 90.57 4.03 252 2418130 46.83 12701 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746951__bin.4 PatroJN_2016__SRS1044739__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_517 68.97 7.52 808 2474787 44.81 3337 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FalardeauJ_2023__SRR20811279__bin.3 MAG_517 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_518 60.34 1.72 322 1649003 36.26 7452 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_001434985.1_ASM143498v1_genomic MAG_518 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus paralimentarius liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_519 66.49 4.89 421 1710734 52.73 4995 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_519 MAG_519 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus zhaodongensis liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_520 62.07 3.45 565 2860831 48.54 6445 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_520 MAG_520 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Yersinia Yersinia enterocolitica liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_521 89.83 1.94 181 1557551 37.4 12942 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. KharnaiorP_2023__SRR22859379__bin.8 LeechJ_xxxx__AF05__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_522 90.31 2.45 250 2032300 43.32 11738 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LandisEA_2021__SRS5653333__bin.1 MAG_505 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_523 67.24 6.44 372 1709147 42.47 5391 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_515 MAG_523 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus sunkii liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_524 84.29 5.33 219 2339774 42.39 16560 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_001436255.1_ASM143625v1_genomic GCF_001436255.1_ASM143625v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus rapi liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_525 86.16 9.39 380 2501316 45.9 7812 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. DeFilippisF_xxxx__DF_96__bin.15 MAG_525 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parafarraginis liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_526 67.55 5.17 341 2349716 33.42 9628 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. KumarJ_2019__SRS4562503__bin.5 KumarJ_2019__SRS4562503__bin.5 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus gallinarum liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_527 93.13 0 40 1305373 39.41 68517 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 GCF_001434655.1_ASM143465v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_528 95.5 2.75 169 2127072 53.68 17574 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_528 MAG_528 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus pantheris liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_529 99.09 0.91 38 3286820 69.14 145708 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_529 MAG_529 Pseudomonadota;Alphaproteobacteria;Rhodobacterales;Rhodobacteraceae;Paracoccus Paracoccus tibetensis liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_530 88.16 2.04 121 1533031 42.4 20821 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_2__P2599__bin.20 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_531 63.79 1.72 72 1052273 39.6 30321 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_531 MAG_531 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus cellicola liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_532 90.39 3.42 422 1910339 43.92 4944 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LandisEA_2021__SRS5653155__bin.1 MAG_532 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_533 78.64 1.01 206 1119522 38.36 8368 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LeechJ_2020__ERS3967740__bin.10 LeechJ_2020__ERS3967740__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus parvulus liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_534 86.83 6.52 531 1935449 46.18 4291 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MotaGutierrezJ_2021__SRR11602150__bin.9 MAG_534 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_535 68.1 8.54 318 1136617 40.36 3990 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_535 MAG_535 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_536 55.89 3.4 475 2405231 36.51 7710 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LandisEA_2021__SRS5653137__bin.2 MAG_536 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus crustorum liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_537 80.35 9.03 747 2607809 43.34 3881 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LandisEA_2021__SRS5653155__bin.1 MAG_537 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_538 78.81 4.56 399 2747613 48.81 11559 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LeechJ_2020__ERS3967722__bin.12 MAG_538 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus sp937874695 liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_539 84.92 3.36 346 2579309 55.32 10622 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_539 MAG_539 Bacillota;Bacilli;Thermoactinomycetales;DSM-45169;Kroppenstedtia Kroppenstedtia eburnea liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_540 80.21 2.72 216 1521398 38.31 9510 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_918814575.1_ASM91881457v1_genomic MAG_540 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Periweissella Periweissella fabaria liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_541 92.5 0.63 34 1139670 34.41 57068 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LandisEA_2021__SRS5653399__bin.4 LandisEA_2021__SRS5653399__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Fructilactobacillus Fructilactobacillus sanfranciscensis liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_542 99.42 1.96 364 4556770 56.13 19546 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_542 MAG_542 Pseudomonadota;Alphaproteobacteria;Rhizobiales;Rhizobiaceae;Brucella Brucella anthropi liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_543 91.66 3.33 283 2266518 35.03 11103 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_001434985.1_ASM143498v1_genomic GCF_001434985.1_ASM143498v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus paralimentarius liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_544 72.44 2.28 289 1344691 45.41 5207 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LeechJ_2020__ERS3967691__bin.13 MAG_544 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella cibaria liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_545 89.99 6.48 265 2805921 34.69 22908 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LandisEA_2021__SRS5653137__bin.2 GCF_001434585.1_ASM143458v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus crustorum liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_546 100 5.71 229 3257660 51.34 20858 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_546 MAG_546 Bacillota;Bacilli;Thermoactinomycetales;DSM-45169;Kroppenstedtia Kroppenstedtia sp959600065 liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_547 93.09 4.01 556 3563996 66.46 9361 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_547 MAG_547 Pseudomonadota;Alphaproteobacteria;Caulobacterales;Caulobacteraceae;CAIOYC01 NA liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_548 84.96 6.26 216 2561369 37.79 21156 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_007992055.1_ASM799205v1_genomic MAG_548 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus mindensis liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_549 99.82 0.77 28 4281405 66.72 219000 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_549 MAG_549 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Novosphingobium NA liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_550 93.11 3.05 275 2804139 34.67 19643 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LandisEA_2021__SRS5653137__bin.2 GCF_001434585.1_ASM143458v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus crustorum liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_551 57.69 0 226 1431579 38.95 7992 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MAG_551 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown MAG_552 78.79 8.58 596 2975108 49.44 7199 ['SAMD00200757', 'SAMD00200758', 'SAMD00200759', 'SAMN14829238', 'SAMN14829237', 'SAMN14829236', 'SAMN14829235'] ['DRR205701', 'DRR205702', 'DRR205703', 'SRR11704906', 'SRR11704907', 'SRR11704908', 'SRR11704909'] China ['PRJDB9193', 'PRJNA630248'] ['DRP006123', 'SRP260231'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_001434395.1_ASM143439v1_genomic MAG_552 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus hammesii liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown DuR_2020__DRS139333__bin.17 50 0 8 365692 38.87 74741 DRS139333 DRR205701 China PRJDB9193 DRP006123 NCBI Du, R., Wu, Q., and Xu, Y. (2020). Chinese Liquor Fermentation: Identification of Key Flavor-Producing Lactobacillus spp. by Quantitative Profiling with Indigenous Internal Standards. Appl. Environ. Microbiol. 86. 10.1128/AEM.00456-20. DuR_2020__DRS139334__bin.17 DuR_2020__DRS139334__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Acetilactobacillus Acetilactobacillus jinshanensis liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown DuR_2020__DRS139333__bin.2 92.84979424 1.519939251 217 1438792 37.44 9753 DRS139333 DRR205701 China PRJDB9193 DRP006123 NCBI Du, R., Wu, Q., and Xu, Y. (2020). Chinese Liquor Fermentation: Identification of Key Flavor-Producing Lactobacillus spp. by Quantitative Profiling with Indigenous Internal Standards. Appl. Environ. Microbiol. 86. 10.1128/AEM.00456-20. KharnaiorP_2023__SRR22859379__bin.8 DeFilippisF_xxxx__DF_7__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown DuR_2020__DRS139333__bin.13 71 0.6 3628 12288747 34.56 3744 DRS139333 DRR205701 China PRJDB9193 DRP006123 NCBI Du, R., Wu, Q., and Xu, Y. (2020). Chinese Liquor Fermentation: Identification of Key Flavor-Producing Lactobacillus spp. by Quantitative Profiling with Indigenous Internal Standards. Appl. Environ. Microbiol. 86. 10.1128/AEM.00456-20. DuR_2020__DRS139333__bin.13 DuR_2020__DRS139333__bin.13 Ascomycota;Saccharomycetes;Saccharomycetales;Phaffomycetaceae;Wickerhamomyces Wickerhamomyces anomalus liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown DuR_2020__DRS139333__bin.16 84.8 0.4 1239 9626647 38.21 10738 DRS139333 DRR205701 China PRJDB9193 DRP006123 NCBI Du, R., Wu, Q., and Xu, Y. (2020). Chinese Liquor Fermentation: Identification of Key Flavor-Producing Lactobacillus spp. by Quantitative Profiling with Indigenous Internal Standards. Appl. Environ. Microbiol. 86. 10.1128/AEM.00456-20. MASTER_WP4_CSIC_2__P2597__bin.1 MASTER_WP4_CSIC_2__P2597__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia kudriavzevii liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown DuR_2020__DRS139334__bin.12 92.59259259 3.589065256 274 1816885 39.37 11648 DRS139334 DRR205702 China PRJDB9193 DRP006123 NCBI Du, R., Wu, Q., and Xu, Y. (2020). Chinese Liquor Fermentation: Identification of Key Flavor-Producing Lactobacillus spp. by Quantitative Profiling with Indigenous Internal Standards. Appl. Environ. Microbiol. 86. 10.1128/AEM.00456-20. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown DuR_2020__DRS139334__bin.17 50 0 4 461729 38.97 231320 DRS139334 DRR205702 China PRJDB9193 DRP006123 NCBI Du, R., Wu, Q., and Xu, Y. (2020). Chinese Liquor Fermentation: Identification of Key Flavor-Producing Lactobacillus spp. by Quantitative Profiling with Indigenous Internal Standards. Appl. Environ. Microbiol. 86. 10.1128/AEM.00456-20. DuR_2020__DRS139334__bin.17 DuR_2020__DRS139334__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Acetilactobacillus Acetilactobacillus jinshanensis liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown DuR_2020__DRS139334__bin.2 92.99639918 4.346707819 308 1563156 37.03 6851 DRS139334 DRR205702 China PRJDB9193 DRP006123 NCBI Du, R., Wu, Q., and Xu, Y. (2020). Chinese Liquor Fermentation: Identification of Key Flavor-Producing Lactobacillus spp. by Quantitative Profiling with Indigenous Internal Standards. Appl. Environ. Microbiol. 86. 10.1128/AEM.00456-20. KharnaiorP_2023__SRR22859379__bin.8 DeFilippisF_xxxx__DF_7__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown DuR_2020__DRS139334__bin.18 52.63157895 1.754385965 437 1894258 45.02 5166 DRS139334 DRR205702 China PRJDB9193 DRP006123 NCBI Du, R., Wu, Q., and Xu, Y. (2020). Chinese Liquor Fermentation: Identification of Key Flavor-Producing Lactobacillus spp. by Quantitative Profiling with Indigenous Internal Standards. Appl. Environ. Microbiol. 86. 10.1128/AEM.00456-20. LeechJ_2020__ERS3967691__bin.13 DuR_2020__DRS139334__bin.18 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella cibaria liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown DuR_2020__DRS139334__bin.20 91.69885309 1.731601732 163 1180416 36.47 9538 DRS139334 DRR205702 China PRJDB9193 DRP006123 NCBI Du, R., Wu, Q., and Xu, Y. (2020). Chinese Liquor Fermentation: Identification of Key Flavor-Producing Lactobacillus spp. by Quantitative Profiling with Indigenous Internal Standards. Appl. Environ. Microbiol. 86. 10.1128/AEM.00456-20. YasirM_2022__SRR18334997__bin.9 GCF_001436775.1_ASM143677v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus acetotolerans liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown DuR_2020__DRS139334__bin.5 78.3919442 3.200408998 411 1424711 44.86 3727 DRS139334 DRR205702 China PRJDB9193 DRP006123 NCBI Du, R., Wu, Q., and Xu, Y. (2020). Chinese Liquor Fermentation: Identification of Key Flavor-Producing Lactobacillus spp. by Quantitative Profiling with Indigenous Internal Standards. Appl. Environ. Microbiol. 86. 10.1128/AEM.00456-20. GCF_004771075.1_ASM477107v1_genomic DuR_2020__DRS139334__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella confusa liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown DuR_2020__DRS139334__bin.9 61.0031348 2.586206897 333 1217252 42.88 4032 DRS139334 DRR205702 China PRJDB9193 DRP006123 NCBI Du, R., Wu, Q., and Xu, Y. (2020). Chinese Liquor Fermentation: Identification of Key Flavor-Producing Lactobacillus spp. by Quantitative Profiling with Indigenous Internal Standards. Appl. Environ. Microbiol. 86. 10.1128/AEM.00456-20. CM_UNINA_FFOOD__FFOOD_425__bin.9 DuR_2020__DRS139334__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown DuR_2020__DRS139334__bin.15 85.4 0.2 1422 9843424 38.23 9398 DRS139334 DRR205702 China PRJDB9193 DRP006123 NCBI Du, R., Wu, Q., and Xu, Y. (2020). Chinese Liquor Fermentation: Identification of Key Flavor-Producing Lactobacillus spp. by Quantitative Profiling with Indigenous Internal Standards. Appl. Environ. Microbiol. 86. 10.1128/AEM.00456-20. MASTER_WP4_CSIC_2__P2597__bin.1 MASTER_WP4_CSIC_2__P2597__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia kudriavzevii liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown DuR_2020__DRS139334__bin.19 76.7 0 3007 11449582 28.69 4320 DRS139334 DRR205702 China PRJDB9193 DRP006123 NCBI Du, R., Wu, Q., and Xu, Y. (2020). Chinese Liquor Fermentation: Identification of Key Flavor-Producing Lactobacillus spp. by Quantitative Profiling with Indigenous Internal Standards. Appl. Environ. Microbiol. 86. 10.1128/AEM.00456-20. DuR_2020__DRS139334__bin.19 DuR_2020__DRS139334__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia kluyveri liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown DuR_2020__DRS139334__bin.3 95 1.7 350 10912046 38.27 50820 DRS139334 DRR205702 China PRJDB9193 DRP006123 NCBI Du, R., Wu, Q., and Xu, Y. (2020). Chinese Liquor Fermentation: Identification of Key Flavor-Producing Lactobacillus spp. by Quantitative Profiling with Indigenous Internal Standards. Appl. Environ. Microbiol. 86. 10.1128/AEM.00456-20. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown DuR_2020__DRS139335__bin.2 93.44262295 0.86934923 107 1593942 53.29 21941 DRS139335 DRR205703 China PRJDB9193 DRP006123 NCBI Du, R., Wu, Q., and Xu, Y. (2020). Chinese Liquor Fermentation: Identification of Key Flavor-Producing Lactobacillus spp. by Quantitative Profiling with Indigenous Internal Standards. Appl. Environ. Microbiol. 86. 10.1128/AEM.00456-20. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF62__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown DuR_2020__DRS139335__bin.22 83.16725456 3.780864198 280 1213989 37.18 5245 DRS139335 DRR205703 China PRJDB9193 DRP006123 NCBI Du, R., Wu, Q., and Xu, Y. (2020). Chinese Liquor Fermentation: Identification of Key Flavor-Producing Lactobacillus spp. by Quantitative Profiling with Indigenous Internal Standards. Appl. Environ. Microbiol. 86. 10.1128/AEM.00456-20. KharnaiorP_2023__SRR22859379__bin.8 DeFilippisF_xxxx__DF_7__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown DuR_2020__DRS139335__bin.15 50 1.754385965 332 1219546 44.92 3932 DRS139335 DRR205703 China PRJDB9193 DRP006123 NCBI Du, R., Wu, Q., and Xu, Y. (2020). Chinese Liquor Fermentation: Identification of Key Flavor-Producing Lactobacillus spp. by Quantitative Profiling with Indigenous Internal Standards. Appl. Environ. Microbiol. 86. 10.1128/AEM.00456-20. LeechJ_2020__ERS3967691__bin.13 DuR_2020__DRS139335__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella cibaria liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown DuR_2020__DRS139335__bin.12 57.01754386 3.50877193 253 895086 44.92 3911 DRS139335 DRR205703 China PRJDB9193 DRP006123 NCBI Du, R., Wu, Q., and Xu, Y. (2020). Chinese Liquor Fermentation: Identification of Key Flavor-Producing Lactobacillus spp. by Quantitative Profiling with Indigenous Internal Standards. Appl. Environ. Microbiol. 86. 10.1128/AEM.00456-20. GCF_004771075.1_ASM477107v1_genomic DuR_2020__DRS139335__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella confusa liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown DuR_2020__DRS139335__bin.11 99.28010471 1.67539267 263 3006210 35.14 22926 DRS139335 DRR205703 China PRJDB9193 DRP006123 NCBI Du, R., Wu, Q., and Xu, Y. (2020). Chinese Liquor Fermentation: Identification of Key Flavor-Producing Lactobacillus spp. by Quantitative Profiling with Indigenous Internal Standards. Appl. Environ. Microbiol. 86. 10.1128/AEM.00456-20. GCF_001434985.1_ASM143498v1_genomic GCF_001434985.1_ASM143498v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus paralimentarius liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown DuR_2020__DRS139335__bin.16 90.16328525 2.34245127 364 2333354 48.33 8317 DRS139335 DRR205703 China PRJDB9193 DRP006123 NCBI Du, R., Wu, Q., and Xu, Y. (2020). Chinese Liquor Fermentation: Identification of Key Flavor-Producing Lactobacillus spp. by Quantitative Profiling with Indigenous Internal Standards. Appl. Environ. Microbiol. 86. 10.1128/AEM.00456-20. LiZ_2018__SRS2920551__bin.1 DuR_2020__DRS139335__bin.16 Bacillota;Bacilli;Bacillales_B;Bacillaceae_C;Weizmannia Weizmannia coagulans liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown DuR_2020__DRS139335__bin.18 88.81017434 3.766588603 650 3177689 37.69 6024 DRS139335 DRR205703 China PRJDB9193 DRP006123 NCBI Du, R., Wu, Q., and Xu, Y. (2020). Chinese Liquor Fermentation: Identification of Key Flavor-Producing Lactobacillus spp. by Quantitative Profiling with Indigenous Internal Standards. Appl. Environ. Microbiol. 86. 10.1128/AEM.00456-20. MAG_608 DuR_2020__DRS139335__bin.18 Bacillota;Bacilli;Bacillales_B;Caldibacillaceae;Caldifermentibacillus Caldifermentibacillus hisashii liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown DuR_2020__DRS139335__bin.6 70.7 0.1 3474 29107315 50.24 10755 DRS139335 DRR205703 China PRJDB9193 DRP006123 NCBI Du, R., Wu, Q., and Xu, Y. (2020). Chinese Liquor Fermentation: Identification of Key Flavor-Producing Lactobacillus spp. by Quantitative Profiling with Indigenous Internal Standards. Appl. Environ. Microbiol. 86. 10.1128/AEM.00456-20. DuR_2020__DRS139335__bin.6 DuR_2020__DRS139335__bin.6 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Aspergillus Aspergillus tubingensis liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown DuR_2020__DRS139335__bin.10 81.4 0.2 1345 9135737 38.1 9006 DRS139335 DRR205703 China PRJDB9193 DRP006123 NCBI Du, R., Wu, Q., and Xu, Y. (2020). Chinese Liquor Fermentation: Identification of Key Flavor-Producing Lactobacillus spp. by Quantitative Profiling with Indigenous Internal Standards. Appl. Environ. Microbiol. 86. 10.1128/AEM.00456-20. MASTER_WP4_CSIC_2__P2597__bin.1 MASTER_WP4_CSIC_2__P2597__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia kudriavzevii liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown DuR_2020__DRS139335__bin.17 94.6 2.1 632 11319193 38.24 29977 DRS139335 DRR205703 China PRJDB9193 DRP006123 NCBI Du, R., Wu, Q., and Xu, Y. (2020). Chinese Liquor Fermentation: Identification of Key Flavor-Producing Lactobacillus spp. by Quantitative Profiling with Indigenous Internal Standards. Appl. Environ. Microbiol. 86. 10.1128/AEM.00456-20. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown DuR_2020__DRS139335__bin.20 75.9 0.5 2787 10701576 28.22 4421 DRS139335 DRR205703 China PRJDB9193 DRP006123 NCBI Du, R., Wu, Q., and Xu, Y. (2020). Chinese Liquor Fermentation: Identification of Key Flavor-Producing Lactobacillus spp. by Quantitative Profiling with Indigenous Internal Standards. Appl. Environ. Microbiol. 86. 10.1128/AEM.00456-20. DuR_2020__DRS139334__bin.19 DuR_2020__DRS139335__bin.20 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia kluyveri liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown DuR_2020__DRS139335__bin.25 65 0 2059 9194986 44.49 5042 DRS139335 DRR205703 China PRJDB9193 DRP006123 NCBI Du, R., Wu, Q., and Xu, Y. (2020). Chinese Liquor Fermentation: Identification of Key Flavor-Producing Lactobacillus spp. by Quantitative Profiling with Indigenous Internal Standards. Appl. Environ. Microbiol. 86. 10.1128/AEM.00456-20. DuR_2020__DRS139335__bin.25 DuR_2020__DRS139335__bin.25 Ascomycota;Saccharomycetes;Saccharomycetales;Phaffomycetaceae;Cyberlindnera Cyberlindnera fabianii liquor chinese chinese_liquor Plant Grain sorghum beverage liquid high unknown unknown unknown GCF_000831645.3_ASM83164v3_genomic 99.48 1.05 1 2790548 37.49 2790548 GCF_000831645.3 GCF_000831645.3 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_000831645.3_ASM83164v3_genomic GCF_000831645.3_ASM83164v3_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus heilongjiangensis pickle chinese chinese_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_001438845.1_ASM143884v1_genomic 99.02 2.47 77 2981246 45.12 113879 GCF_001438845.1 GCF_001438845.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001438845.1_ASM143884v1_genomic GCF_001438845.1_ASM143884v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus xiangfangensis pickle chinese chinese_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003946045.1_ASM394604v1_genomic 99.38 0 36 3110930 50.33 189775 GCF_003946045.1 GCF_003946045.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946045.1_ASM394604v1_genomic GCF_003946045.1_ASM394604v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus mulengensis pickle chinese chinese_traditional_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003946095.1_ASM394609v1_genomic 99.38 0.21 64 2330586 49.16 97317 GCF_003946095.1 GCF_003946095.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946095.1_ASM394609v1_genomic GCF_003946095.1_ASM394609v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus lindianensis pickle chinese chinese_traditional_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003946145.1_ASM394614v1_genomic 99.38 0.21 35 2290968 47.54 199066 GCF_003946145.1 GCF_003946145.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946145.1_ASM394614v1_genomic GCF_003946145.1_ASM394614v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus huananensis pickle chinese chinese_traditional_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003946165.1_ASM394616v1_genomic 99.48 1.31 82 2864583 50.91 70190 GCF_003946165.1 GCF_003946165.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946165.1_ASM394616v1_genomic GCF_003946165.1_ASM394616v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus baoqingensis pickle chinese chinese_traditional_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003946335.1_ASM394633v1_genomic 99.06 0.71 102 3006648 47.39 72602 GCF_003946335.1 GCF_003946335.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946335.1_ASM394633v1_genomic GCF_003946335.1_ASM394633v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus fujinensis pickle chinese chinese_traditional_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003946345.1_ASM394634v1_genomic 99.38 0.62 43 2718164 47.73 139591 GCF_003946345.1 GCF_003946345.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946345.1_ASM394634v1_genomic GCF_003946345.1_ASM394634v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus tongjiangensis pickle chinese chinese_traditional_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003946385.1_ASM394638v1_genomic 99.46 0.82 152 2698660 42.66 35721 GCF_003946385.1 GCF_003946385.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946385.1_ASM394638v1_genomic GCF_003946385.1_ASM394638v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus zhaoyuanensis pickle chinese chinese_traditional_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003946395.1_ASM394639v1_genomic 99.06 0 54 2718279 48.85 113258 GCF_003946395.1 GCF_003946395.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946395.1_ASM394639v1_genomic GCF_003946395.1_ASM394639v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus fuyuanensis pickle chinese chinese_traditional_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003946445.1_ASM394644v1_genomic 99.18 1.49 113 3033766 42.58 52997 GCF_003946445.1 GCF_003946445.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946445.1_ASM394644v1_genomic GCF_003946445.1_ASM394644v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus jiayinensis pickle chinese chinese_traditional_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003946485.1_ASM394648v1_genomic 99.48 0.52 51 2468902 58.28 88129 GCF_003946485.1 GCF_003946485.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946485.1_ASM394648v1_genomic GCF_003946485.1_ASM394648v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus jixianensis pickle chinese chinese_traditional_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003946545.1_ASM394654v1_genomic 99.38 0 35 2185757 49.8 148916 GCF_003946545.1 GCF_003946545.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946545.1_ASM394654v1_genomic GCF_003946545.1_ASM394654v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus tangyuanensis pickle chinese chinese_traditional_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003946025.1_ASM394602v1_genomic 99.48 1.83 91 2605895 52.72 42582 GCF_003946025.1 GCF_003946025.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946025.1_ASM394602v1_genomic GCF_003946025.1_ASM394602v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus songhuajiangensis sourdough chinese_traditional_pickle_and_sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days MASTER_WP4_UNINA_2__R-35__bin.3 90.06677411 0.72859745 304 1402826 53.66 5480 NA SRR28523270 Italy PRJNA1094419 SRP499185 NCBI NA FontanaF_2023__SRR20746839__bin.4 MASTER_WP4_UNINA_2__R-35__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum chocolate chocolate_coating Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MASTER_WP4_UNINA_2__R-35__bin.4 64.9122807 0 149 1811429 53.82 19765 NA SRR28523270 Italy PRJNA1094419 SRP499185 NCBI NA MASTER_WP4_UNINA_2__C-22__bin.5 MASTER_WP4_UNINA_2__R-35__bin.4 Bacillota;Bacilli;Bacillales;Anoxybacillaceae;Geobacillus Geobacillus stearothermophilus chocolate chocolate_coating Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MASTER_WP4_UNINA_2__R-35__bin.9 77.63225475 2.754237288 406 1438320 69.1 4083 NA SRR28523270 Italy PRJNA1094419 SRP499185 NCBI NA DeFilippisF_xxxx__DF_58__bin.5 MASTER_WP4_UNINA_2__R-35__bin.9 Deinococcota;Deinococci;Deinococcales;Thermaceae;Thermus Thermus parvatiensis chocolate chocolate_coating Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days GCF_011516735.1_ASM1151673v1_genomic 100 0 163 4217005 58.34 88078 GCF_011516735.1 GCF_011516735.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_011516735.1_ASM1151673v1_genomic GCF_011516735.1_ASM1151673v1_genomic Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fallax cider apple cider Plant Fruit apple beverage liquid medium lactic mesophilic 1-3 months GCF_011516755.1_ASM1151675v1_genomic 99.65 0.25 88 3884131 58.96 230861 GCF_011516755.1 GCF_011516755.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_011516755.1_ASM1151675v1_genomic GCF_011516755.1_ASM1151675v1_genomic Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter conturbans cider apple cider Plant Fruit apple beverage liquid medium lactic mesophilic 1-3 months EBC_098.21 99.48 1.31 60 2334748 36.48 59679 SAMN40633092 SRS20892324 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_098.21 EBC_098.21 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus farciminis soy sauce cinsoy_s21_v1 Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months EBC_098.8 85.13 3.52 401 3513833 62.91 11237 SAMN40633092 SRS20892324 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_098.8 EBC_098.8 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Salinicola Salinicola salarius A soy sauce cinsoy_s21_v1 Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months EBC_097.14 99.06 0.12 52 4009479 43.77 196009 SAMN40633091 SRS20892323 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 MotaGutierrezJ_2021__SRR11602153__bin.4 EBC_097.14 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus subtilis soy sauce cinsoy_tamari_mother Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months MAG_470 85.69 1.76 21 1285705 44.65 88485 SAMN00809386 ['SRR442026', 'SRR442027'] Belgium PRJNA83439 SRP010819 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_001047115.2_ASM104711v2_genomic GCF_001047115.2_ASM104711v2_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Fructobacillus Fructobacillus pseudoficulneus chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MAG_471 82.03 0 38 2151297 64.88 74824 SAMN00809386 ['SRR442026', 'SRR442027'] Belgium PRJNA83439 SRP010819 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LimaC_2020__SRR9646966__bin.12 LimaC_2020__SRR9646966__bin.12 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas maltaceti chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MAG_472 94.84 5.64 291 3431943 61.67 16523 SAMN00809386 ['SRR442026', 'SRR442027'] Belgium PRJNA83439 SRP010819 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.2 MAG_472 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter saccharivorans chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MAG_473 91.54 3.17 394 2601891 57.67 8394 SAMN00809386 ['SRR442026', 'SRR442027'] Belgium PRJNA83439 SRP010819 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_001787355.1_ASM178735v1_genomic MAG_473 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Kozakia Kozakia baliensis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MAG_474 94.88 2.14 100 1712385 33.77 62206 SAMN00809386 ['SRR442026', 'SRR442027'] Belgium PRJNA83439 SRP010819 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_001436735.1_ASM143673v1_genomic GCF_001436735.1_ASM143673v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus cacaonum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MAG_475 99.18 0 67 1869141 52.45 41742 SAMN00809386 ['SRR442026', 'SRR442027'] Belgium PRJNA83439 SRP010819 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746839__bin.4 MAG_475 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MAG_476 93.72 0.82 300 1853423 52.64 7782 SAMN00809386 ['SRR442026', 'SRR442027'] Belgium PRJNA83439 SRP010819 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746839__bin.4 MAG_476 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MAG_477 95.36 0.55 101 1738106 52.91 33780 SAMN00809386 ['SRR442026', 'SRR442027'] Belgium PRJNA83439 SRP010819 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF55__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MAG_478 98.17 1.28 186 2294212 36.69 21463 SAMN00809386 ['SRR442026', 'SRR442027'] Belgium PRJNA83439 SRP010819 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 GCF_019444005.1_ASM1944400v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MAG_479 98.15 2.78 123 3087551 44.66 33841 SAMN00809386 ['SRR442026', 'SRR442027'] Belgium PRJNA83439 SRP010819 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MAG_480 98.69 9.69 91 2182107 37.61 49879 SAMN00809386 ['SRR442026', 'SRR442027'] Belgium PRJNA83439 SRP010819 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LimaC_2020__SRR9640350__bin.18 LimaC_2020__SRR9640350__bin.18 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus vini chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MAG_481 93.3 1.39 99 1938111 38.96 43551 SAMN00809386 ['SRR442026', 'SRR442027'] Belgium PRJNA83439 SRP010819 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MAG_481 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MAG_482 96.41 0.64 229 4562076 64.09 32646 SAMN00809386 ['SRR442026', 'SRR442027'] Belgium PRJNA83439 SRP010819 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_482 MAG_482 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E NA chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640343__bin.10 83.76 1.59 549 2444045 61.05 5196 SAMN12211018 SRR9640343 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 OlgaP_2019__SRR11910536__bin.9 LimaC_2020__SRR9640343__bin.10 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas hansenii chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640343__bin.5 54.83 2.34 199 2347878 50.14 18599 SAMN12211018 SRR9640343 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9640353__bin.23 LimaC_2020__SRR9640353__bin.23 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Tatumella Tatumella citrea chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640344__bin.1 56.88 3.79 877 2278320 53.77 2661 SAMN12211026 SRR9640344 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9640355__bin.26 LimaC_2020__SRR9640344__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Pantoea Pantoea communis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640344__bin.11 91.21 2.85 572 3498103 55.39 8453 SAMN12211026 SRR9640344 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 G_361_1B_senegalensis_assembly LimaC_2020__SRR9640344__bin.11 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter senegalensis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640344__bin.12 68.25 3.28 918 3276490 49.26 3986 SAMN12211026 SRR9640344 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9640353__bin.23 LimaC_2020__SRR9640344__bin.12 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Tatumella Tatumella citrea chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640344__bin.15 81.04 1.2 76 2279092 64.85 52826 SAMN12211026 SRR9640344 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9646966__bin.12 LimaC_2020__SRR9646966__bin.12 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas maltaceti chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640344__bin.20 61.63 2.76 741 2082638 66.07 2994 SAMN12211026 SRR9640344 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9640352__bin.14 LimaC_2020__SRR9640352__bin.14 Pseudomonadota;Alphaproteobacteria;Caulobacterales;Caulobacteraceae;Brevundimonas Brevundimonas nasdae chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640344__bin.8 83.01 1.07 307 2076860 58.03 9657 SAMN12211026 SRR9640344 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 SRR10454486C2703_ghanensis_assembly LimaC_2020__SRR9640344__bin.8 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter ghanensis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640345__bin.1 50.8 0.68 35 1428104 65.86 53694 SAMN12211025 SRR9640345 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9646966__bin.12 LimaC_2020__SRR9646966__bin.12 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas maltaceti chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640345__bin.11 99.03 3.96 118 2293851 57.77 31071 SAMN12211025 SRR9640345 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 SRR10454486C2703_ghanensis_assembly LimaC_2020__SRR9640348__bin.16 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter ghanensis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640345__bin.2 66.99 0.09 18 2423006 65.85 212528 SAMN12211025 SRR9640345 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9640352__bin.14 LimaC_2020__SRR9640352__bin.14 Pseudomonadota;Alphaproteobacteria;Caulobacterales;Caulobacteraceae;Brevundimonas Brevundimonas nasdae chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640345__bin.5 66.98 2.12 382 1904821 58.02 5785 SAMN12211025 SRR9640345 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 G_361_1B_senegalensis_assembly LimaC_2020__SRR9640345__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter senegalensis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640345__bin.6 69.63 2.4 142 2337776 64.3 32367 SAMN12211025 SRR9640345 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 GCF_003403295.1_ASM340329v1_genomic GCF_003403295.1_ASM340329v1_genomic Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter melaceti chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640346__bin.18 89.92 1.68 481 2401802 60.12 6441 SAMN12211017 SRR9640346 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.6 LimaC_2020__SRR9640346__bin.18 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter papayae chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640346__bin.19 53.23 0.38 451 1480957 50.83 3517 SAMN12211017 SRR9640346 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9640356__bin.14 LimaC_2020__SRR9640346__bin.19 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter thailandicus chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640346__bin.23 58.57 4.14 924 3051945 54.11 3615 SAMN12211017 SRR9640346 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9640355__bin.26 LimaC_2020__SRR9640346__bin.23 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Pantoea Pantoea communis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640346__bin.27 72.2 3.42 471 2952366 53.39 8849 SAMN12211017 SRR9640346 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9640346__bin.27 LimaC_2020__SRR9640346__bin.27 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Tatumella Tatumella terrea chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640346__bin.4 87.89 4.1 268 4226746 49.88 27245 SAMN12211017 SRR9640346 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9640353__bin.23 LimaC_2020__SRR9640353__bin.23 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Tatumella Tatumella citrea chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640347__bin.4 90.97 0.22 62 1734889 52.7 41389 SAMN12211028 SRR9640347 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 FontanaF_2023__SRR20746839__bin.4 MAG_475 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640347__bin.5 90.03 4.49 314 2216385 57.56 9411 SAMN12211028 SRR9640347 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 SRR10454486C2703_ghanensis_assembly LimaC_2020__SRR9640347__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter ghanensis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640348__bin.11 87.29 1.25 401 2979888 56.18 9805 SAMN12211027 SRR9640348 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 G_361_1B_senegalensis_assembly LimaC_2020__SRR9640348__bin.11 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter senegalensis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640348__bin.16 92.36 1.59 91 2105933 58 35095 SAMN12211027 SRR9640348 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 SRR10454486C2703_ghanensis_assembly LimaC_2020__SRR9640348__bin.16 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter ghanensis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640348__bin.17 51.76 0 352 1063933 37.65 3258 SAMN12211027 SRR9640348 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9640350__bin.18 LimaC_2020__SRR9640350__bin.18 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus vini chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640348__bin.2 89.54 2.03 97 2735070 64.55 58171 SAMN12211027 SRR9640348 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9646966__bin.12 LimaC_2020__SRR9646966__bin.12 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas maltaceti chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640348__bin.8 57.95 1.47 661 2001322 64.13 3192 SAMN12211027 SRR9640348 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 GCF_003403295.1_ASM340329v1_genomic LimaC_2020__SRR9640348__bin.8 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter melaceti chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640350__bin.12 99.8 0.44 281 3627935 35.88 23815 SAMN12211029 SRR9640350 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9640350__bin.12 LimaC_2020__SRR9640350__bin.12 Bacillota;Bacilli;Bacillales_B;Bacillaceae_C;Weizmannia Weizmannia ginsengihumi chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640350__bin.13 82.76 3.16 281 1511797 42.93 6539 SAMN12211029 SRR9640350 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 CM_UNINA_FFOOD__FFOOD_425__bin.9 LimaC_2020__SRR9640350__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640350__bin.18 99.76 0.23 106 2051006 37.66 49414 SAMN12211029 SRR9640350 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9640350__bin.18 LimaC_2020__SRR9640350__bin.18 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus vini chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640350__bin.3 88.92 3.44 320 2242473 57.38 10013 SAMN12211029 SRR9640350 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 SRR10454486C2703_ghanensis_assembly LimaC_2020__SRR9640350__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter ghanensis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640350__bin.6 67.68 4.03 614 2155504 56.66 3916 SAMN12211029 SRR9640350 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 G_361_1B_senegalensis_assembly LimaC_2020__SRR9640350__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter senegalensis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640351__bin.10 78.02 2.55 216 2673203 63.96 18394 SAMN12211024 SRR9640351 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 GCF_003403295.1_ASM340329v1_genomic GCF_003403295.1_ASM340329v1_genomic Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter melaceti chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640351__bin.2 89.73 3.63 375 2850790 62.53 11021 SAMN12211024 SRR9640351 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 OlgaP_2019__SRR11909888__bin.7 LimaC_2020__SRR9640351__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter oboediens chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640351__bin.20 94.1 0.17 331 3364355 66.05 13498 SAMN12211024 SRR9640351 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9640352__bin.14 LimaC_2020__SRR9640352__bin.14 Pseudomonadota;Alphaproteobacteria;Caulobacterales;Caulobacteraceae;Brevundimonas Brevundimonas nasdae chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640351__bin.22 86.68 1.55 116 2724984 64.64 42488 SAMN12211024 SRR9640351 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9646966__bin.12 LimaC_2020__SRR9646966__bin.12 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas maltaceti chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640351__bin.23 96.72 2.95 364 3297257 63.93 14496 SAMN12211024 SRR9640351 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 MotaGutierrezJ_2021__SRR11602152__bin.2 LimaC_2020__SRR9640351__bin.23 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Rhodanobacteraceae;Frateuria Frateuria aurantia chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640351__bin.6 60.29 1.36 499 1900578 58.23 4233 SAMN12211024 SRR9640351 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 G_361_1B_senegalensis_assembly LimaC_2020__SRR9640351__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter senegalensis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640352__bin.1 99.8 2.64 371 3003978 62.52 12221 SAMN12211023 SRR9640352 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.2 LimaC_2020__SRR9640353__bin.12 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter saccharivorans chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640352__bin.14 99.98 0.12 31 3452888 66.02 166049 SAMN12211023 SRR9640352 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9640352__bin.14 LimaC_2020__SRR9640352__bin.14 Pseudomonadota;Alphaproteobacteria;Caulobacterales;Caulobacteraceae;Brevundimonas Brevundimonas nasdae chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640352__bin.18 54.42 0.45 451 1495856 62.1 3525 SAMN12211023 SRR9640352 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.6 LimaC_2020__SRR9640352__bin.18 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter papayae chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640352__bin.19 97.09 0.74 164 2297865 57.64 21350 SAMN12211023 SRR9640352 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 SRR10454486C2703_ghanensis_assembly LimaC_2020__SRR9640352__bin.19 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter ghanensis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640352__bin.5 91.57 4.63 39 2883657 64.36 102882 SAMN12211023 SRR9640352 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9646966__bin.12 LimaC_2020__SRR9646966__bin.12 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas maltaceti chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640353__bin.12 100 2.44 109 3036524 62.14 46338 SAMN12211022 SRR9640353 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.2 LimaC_2020__SRR9640353__bin.12 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter saccharivorans chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640353__bin.15 85.54 2.2 573 2823286 60.47 6108 SAMN12211022 SRR9640353 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 OlgaP_2019__SRR11910536__bin.9 LimaC_2020__SRR9640353__bin.15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas hansenii chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640353__bin.16 93.07 3.5 358 3184795 63.94 14006 SAMN12211022 SRR9640353 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 MotaGutierrezJ_2021__SRR11602152__bin.2 LimaC_2020__SRR9640351__bin.23 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Rhodanobacteraceae;Frateuria Frateuria aurantia chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640353__bin.23 90.8 2.84 259 4327081 49.87 27663 SAMN12211022 SRR9640353 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9640353__bin.23 LimaC_2020__SRR9640353__bin.23 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Tatumella Tatumella citrea chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640353__bin.29 99.48 1.34 296 4882597 60.06 26560 SAMN12211022 SRR9640353 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9640355__bin.30 LimaC_2020__SRR9640355__bin.30 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Serratia Serratia marcescens chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640353__bin.7 50.36 1.62 760 2428948 54.44 3349 SAMN12211022 SRR9640353 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9640355__bin.26 LimaC_2020__SRR9640353__bin.7 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Pantoea Pantoea communis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640354__bin.1 89.35 3.55 678 2730231 61.82 4794 SAMN12211021 SRR9640354 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.2 LimaC_2020__SRR9640354__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter saccharivorans chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640354__bin.11 93.13 4.93 454 4406122 49.8 16831 SAMN12211021 SRR9640354 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9640353__bin.23 LimaC_2020__SRR9640353__bin.23 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Tatumella Tatumella citrea chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640354__bin.15 65.5 0.9 480 1804052 50.7 4240 SAMN12211021 SRR9640354 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9640356__bin.14 LimaC_2020__SRR9640354__bin.15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter thailandicus chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640354__bin.2 99.09 2.79 280 3308538 55.74 20250 SAMN12211021 SRR9640354 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 G_361_1B_senegalensis_assembly LimaC_2020__SRR9640354__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter senegalensis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640354__bin.22 72.33 4.04 304 1360148 53.61 5283 SAMN12211021 SRR9640354 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 FontanaF_2023__SRR20746839__bin.4 MAG_475 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640354__bin.28 77.3 2.97 594 1800827 48.2 3014 SAMN12211021 SRR9640354 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 YasirM_2022__SRR18335007__bin.3 LimaC_2020__SRR9640354__bin.28 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Rosenbergiella Rosenbergiella epipactidis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640355__bin.12 99.39 0.71 141 2689804 56.84 35002 SAMN12211020 SRR9640355 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 G_361_1B_senegalensis_assembly LimaC_2020__SRR9640355__bin.12 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter senegalensis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640355__bin.13 72.43 1.5 116 2957182 49.55 48594 SAMN12211020 SRR9640355 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9640353__bin.23 LimaC_2020__SRR9640353__bin.23 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Tatumella Tatumella citrea chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640355__bin.14 98.03 1.37 308 2815639 57.81 13407 SAMN12211020 SRR9640355 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 GCF_001787355.1_ASM178735v1_genomic LimaC_2020__SRR9640355__bin.14 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Kozakia Kozakia baliensis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640355__bin.20 86.42 0.68 328 2369601 53.04 9803 SAMN12211020 SRR9640355 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 G_514_1B_orientalis_assembly LimaC_2020__SRR9640355__bin.20 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640355__bin.21 100 3.92 112 3341512 61.74 53385 SAMN12211020 SRR9640355 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.2 LimaC_2020__SRR9640353__bin.12 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter saccharivorans chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640355__bin.23 87.63 3.82 342 2277339 53.26 8904 SAMN12211020 SRR9640355 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 MortensenS_xxxx__WK032-1-L-48h-03B6_S34__bin.2 LimaC_2020__SRR9640355__bin.23 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter pasteurianus chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640355__bin.24 64.81 3.84 396 2537730 51.84 8571 SAMN12211020 SRR9640355 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9640355__bin.24 LimaC_2020__SRR9640355__bin.24 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Tatumella Tatumella saanichensis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640355__bin.26 77.01 3.71 769 3893205 54.14 6195 SAMN12211020 SRR9640355 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9640355__bin.26 LimaC_2020__SRR9640355__bin.26 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Pantoea Pantoea communis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640355__bin.30 99.64 0.25 194 4901976 60.04 37725 SAMN12211020 SRR9640355 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9640355__bin.30 LimaC_2020__SRR9640355__bin.30 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Serratia Serratia marcescens chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640355__bin.34 60.85 3.65 544 1624660 59.7 3135 SAMN12211020 SRR9640355 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 MortensenS_xxxx__WK058-1-L-48h-04G6_S31__bin.6 LimaC_2020__SRR9640355__bin.34 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter persici chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640355__bin.35 71.16 2.19 184 2713927 63.47 26879 SAMN12211020 SRR9640355 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 MotaGutierrezJ_2021__SRR11602152__bin.2 LimaC_2020__SRR9640351__bin.23 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Rhodanobacteraceae;Frateuria Frateuria aurantia chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640355__bin.4 84.61 3.89 481 2471303 48.6 6039 SAMN12211020 SRR9640355 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 YasirM_2022__SRR18335007__bin.3 LimaC_2020__SRR9640355__bin.4 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Rosenbergiella Rosenbergiella epipactidis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640356__bin.14 99.54 0.1 59 2327448 50.69 64148 SAMN12211019 SRR9640356 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9640356__bin.14 LimaC_2020__SRR9640356__bin.14 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter thailandicus chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640356__bin.15 78.25 1.92 65 2629779 56.59 68296 SAMN12211019 SRR9640356 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 G_361_1B_senegalensis_assembly LimaC_2020__SRR9640355__bin.12 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter senegalensis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640356__bin.22 84.55 4.05 139 2370649 60.09 34718 SAMN12211019 SRR9640356 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.6 LimaC_2020__SRR9640346__bin.18 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter papayae chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640356__bin.29 94.08 2.88 350 3094429 62 12115 SAMN12211019 SRR9640356 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.2 LimaC_2020__SRR9640353__bin.12 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter saccharivorans chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9640356__bin.6 70.77 3.85 912 3395606 54.23 4172 SAMN12211019 SRR9640356 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9640355__bin.26 LimaC_2020__SRR9640356__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Pantoea Pantoea communis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9646966__bin.12 87.2 0.21 102 2587725 64.83 54408 SAMN12211030 SRR9646966 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 LimaC_2020__SRR9646966__bin.12 LimaC_2020__SRR9646966__bin.12 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas maltaceti chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9646966__bin.13 79.95 4.2 412 1972938 58.04 5896 SAMN12211030 SRR9646966 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 SRR10454486C2703_ghanensis_assembly LimaC_2020__SRR9646966__bin.13 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter ghanensis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9646966__bin.14 51.03 0.18 585 1708131 56.67 3015 SAMN12211030 SRR9646966 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 G_361_1B_senegalensis_assembly LimaC_2020__SRR9646966__bin.14 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter senegalensis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days LimaC_2020__SRR9646966__bin.7 99.53 0.21 109 1756591 52.72 24693 SAMN12211030 SRR9646966 Brazil PRJNA552479 SRP212872 NCBI de C Lima CO, Vaz ABM, De Castro GM, Lobo F, Solar R, Rodrigues C, Martins Pinto LR, Vandenberghe L, Pereira G, Miúra da Costa A, Benevides RG, Azevedo V, Trovatti Uetanabaro AP, Soccol CR, Góes-Neto A. Integrating microbial metagenomics and physicochemical parameters and a new perspective on starter culture for fine cocoa fermentation. Food Microbiol. 2021 Feb;93:103608. doi: 10.1016/j.fm.2020.103608 FontanaF_2023__SRR20746839__bin.4 MAG_475 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602139__bin.20 97.66 2.29 236 2728858 45.08 16906 SAMN14652848 SRR11602139 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. FalardeauJ_2023__SRR20811279__bin.3 MotaGutierrezJ_2021__SRR11602148__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602139__bin.21 85.14 0.81 814 3704338 43.51 5572 SAMN14652848 SRR11602139 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602153__bin.4 MotaGutierrezJ_2021__SRR11602153__bin.4 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus subtilis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602139__bin.22 54.38 0.22 8 1149253 36.97 432096 SAMN14652848 SRR11602139 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602139__bin.25 77.26 2.23 115 1890268 34.01 68575 SAMN14652848 SRR11602139 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. GCF_001436735.1_ASM143673v1_genomic GCF_001436735.1_ASM143673v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus cacaonum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602139__bin.27 94.94 4.8 221 2367805 57.58 17382 SAMN14652848 SRR11602139 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. SRR10454486C2703_ghanensis_assembly MotaGutierrezJ_2021__SRR11602153__bin.10 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter ghanensis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602139__bin.9 63.46 0.29 75 1148341 37.44 23558 SAMN14652848 SRR11602139 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602156__bin.13 MotaGutierrezJ_2021__SRR11602156__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus amylovorus chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602140__bin.11 94.92 3 459 3125572 60.28 8881 SAMN14652847 SRR11602140 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. OlgaP_2019__SRR11910536__bin.9 MotaGutierrezJ_2021__SRR11602150__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas hansenii chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602140__bin.14 99.94 0.16 154 2105178 38.81 32220 SAMN14652847 SRR11602140 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MotaGutierrezJ_2021__SRR11602140__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602140__bin.16 75.47 3.52 170 1868349 58.54 17135 SAMN14652847 SRR11602140 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. SRR10454486C2703_ghanensis_assembly MotaGutierrezJ_2021__SRR11602140__bin.16 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter ghanensis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602140__bin.17 99.97 4.04 128 2856918 38.73 96456 SAMN14652847 SRR11602140 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602148__bin.1 MotaGutierrezJ_2021__SRR11602148__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus suebicus chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602140__bin.21 97.95 1.88 201 2477423 45.09 17589 SAMN14652847 SRR11602140 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. FalardeauJ_2023__SRR20811279__bin.3 MotaGutierrezJ_2021__SRR11602148__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602140__bin.22 76.3 2.56 977 3648997 58.28 4168 SAMN14652847 SRR11602140 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602140__bin.22 MotaGutierrezJ_2021__SRR11602140__bin.22 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Pantoea Pantoea dispersa chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602140__bin.24 92.9 0.14 91 2283413 46.13 57582 SAMN14652847 SRR11602140 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602150__bin.9 MotaGutierrezJ_2021__SRR11602150__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602140__bin.26 51.08 0.08 15 1153132 36.59 130187 SAMN14652847 SRR11602140 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK045-2-G-48h-04C3_S121__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602140__bin.27 98.38 3.09 103 3352861 46.42 67012 SAMN14652847 SRR11602140 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. GCF_001435975.1_ASM143597v1_genomic MotaGutierrezJ_2021__SRR11602140__bin.27 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Secundilactobacillus Secundilactobacillus collinoides chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602141__bin.12 94.02 2.29 81 2591558 38.95 99375 SAMN14652846 SRR11602141 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602148__bin.1 MotaGutierrezJ_2021__SRR11602148__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus suebicus chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602141__bin.15 50.99 0.05 23 926212 33.61 85510 SAMN14652846 SRR11602141 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. GCF_001436735.1_ASM143673v1_genomic GCF_001436735.1_ASM143673v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus cacaonum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602141__bin.19 99.88 1.72 97 2666452 45.05 42204 SAMN14652846 SRR11602141 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602141__bin.21 88.59 0.8 115 1696135 53.11 29429 SAMN14652846 SRR11602141 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. FontanaF_2023__SRR20746839__bin.4 MotaGutierrezJ_2021__SRR11602141__bin.21 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602141__bin.22 88.66 1.94 336 2158198 46.31 8515 SAMN14652846 SRR11602141 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602150__bin.9 MotaGutierrezJ_2021__SRR11602141__bin.22 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602141__bin.28 72.51 4.58 367 1959495 59.57 6742 SAMN14652846 SRR11602141 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. SRR10454516C127_okinawensis_assembly MotaGutierrezJ_2021__SRR11602141__bin.28 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter okinawensis A chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602142__bin.14 53.99 0.09 19 998754 39.67 84527 SAMN14652845 SRR11602142 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MotaGutierrezJ_2021__SRR11602140__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602142__bin.15 75.7 0.04 25 1513465 33.78 94541 SAMN14652845 SRR11602142 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. GCF_001436735.1_ASM143673v1_genomic GCF_001436735.1_ASM143673v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus cacaonum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602142__bin.17 89.66 1.67 195 2377121 45.08 17949 SAMN14652845 SRR11602142 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. FalardeauJ_2023__SRR20811279__bin.3 MotaGutierrezJ_2021__SRR11602148__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602142__bin.20 99.76 3.75 115 2738947 38.91 100660 SAMN14652845 SRR11602142 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602148__bin.1 MotaGutierrezJ_2021__SRR11602148__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus suebicus chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602142__bin.5 71 0.08 758 2189216 72.06 3026 SAMN14652845 SRR11602142 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602150__bin.4 MotaGutierrezJ_2021__SRR11602142__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Curtobacterium Curtobacterium citreum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602142__bin.7 99.97 0.37 71 2280718 45.97 60765 SAMN14652845 SRR11602142 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602150__bin.9 MotaGutierrezJ_2021__SRR11602150__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602142__bin.9 70.4 1.44 719 2504766 60.55 3790 SAMN14652845 SRR11602142 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. OlgaP_2019__SRR11910536__bin.9 MotaGutierrezJ_2021__SRR11602142__bin.9 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas hansenii chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602143__bin.12 53 1.46 610 1819623 60.32 3200 SAMN14652844 SRR11602143 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602143__bin.12 MotaGutierrezJ_2021__SRR11602143__bin.12 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Asaia Asaia bogorensis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602143__bin.14 89.99 4.93 296 2535576 58.4 12613 SAMN14652844 SRR11602143 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. SRR10454516C127_okinawensis_assembly MotaGutierrezJ_2021__SRR11602143__bin.14 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter okinawensis A chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602143__bin.16 52.6 0.22 62 1147356 37.99 69718 SAMN14652844 SRR11602143 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602143__bin.16 MotaGutierrezJ_2021__SRR11602143__bin.16 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus suebicus chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602143__bin.2 70.01 2.04 428 2046794 58.96 5825 SAMN14652844 SRR11602143 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MAG_15 MotaGutierrezJ_2021__SRR11602143__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602143__bin.21 96.2 3.42 261 2415738 36.44 16958 SAMN14652844 SRR11602143 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MotaGutierrezJ_2021__SRR11602143__bin.21 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602143__bin.8 72.89 1.89 603 2245218 52.21 4287 SAMN14652844 SRR11602143 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. EBC_113.1 MotaGutierrezJ_2021__SRR11602143__bin.8 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Tatumella Tatumella ptyseos chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602144__bin.11 57.19 3.86 34 1280456 38.31 82682 SAMN14652843 SRR11602144 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602143__bin.16 MotaGutierrezJ_2021__SRR11602143__bin.16 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus suebicus chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602144__bin.15 56.55 0.4 57 1430532 46.17 35872 SAMN14652843 SRR11602144 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602150__bin.9 MotaGutierrezJ_2021__SRR11602150__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602144__bin.17 99.95 2.5 258 3433596 63.69 24124 SAMN14652843 SRR11602144 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602152__bin.2 MotaGutierrezJ_2021__SRR11602152__bin.2 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Rhodanobacteraceae;Frateuria Frateuria aurantia chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602144__bin.18 53.89 0.09 15 1088597 33.53 228741 SAMN14652843 SRR11602144 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. GCF_001436735.1_ASM143673v1_genomic GCF_001436735.1_ASM143673v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus cacaonum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602144__bin.19 89.38 3.99 388 1852159 39.13 6068 SAMN14652843 SRR11602144 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MotaGutierrezJ_2021__SRR11602140__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602144__bin.22 52.44 0.65 46 1374961 39.62 85143 SAMN14652843 SRR11602144 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602148__bin.1 MotaGutierrezJ_2021__SRR11602148__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus suebicus chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602144__bin.24 57.3 0.46 570 1740815 61.77 3241 SAMN14652843 SRR11602144 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. OlgaP_2019__SRR11910536__bin.9 MotaGutierrezJ_2021__SRR11602144__bin.24 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas hansenii chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602144__bin.33 51.46 0.19 32 1173275 36.89 105744 SAMN14652843 SRR11602144 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK045-2-G-48h-04C3_S121__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602145__bin.1 90.64 0.82 562 2929511 37.82 6239 SAMN14652842 SRR11602145 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MAG_608 MotaGutierrezJ_2021__SRR11602145__bin.1 Bacillota;Bacilli;Bacillales_B;Caldibacillaceae;Caldifermentibacillus Caldifermentibacillus hisashii chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602145__bin.13 50.52 0.01 50 939220 37.5 32204 SAMN14652842 SRR11602145 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602156__bin.13 MotaGutierrezJ_2021__SRR11602156__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus amylovorus chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602145__bin.17 85.01 1.13 163 3380207 35.31 38882 SAMN14652842 SRR11602145 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602145__bin.17 MotaGutierrezJ_2021__SRR11602145__bin.17 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Ureibacillus Ureibacillus galli chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602145__bin.20 65.66 0.71 143 2892176 37.21 33614 SAMN14652842 SRR11602145 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602145__bin.20 MotaGutierrezJ_2021__SRR11602145__bin.20 Bacillota;Bacilli;Bacillales_B;DSM-18226;Cytobacillus Cytobacillus stercorigallinarum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602145__bin.26 88.51 0.82 42 1676729 42.22 82209 SAMN14652842 SRR11602145 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602145__bin.26 MotaGutierrezJ_2021__SRR11602145__bin.26 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus corticis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602145__bin.3 93.68 1.52 252 3666437 45.08 28969 SAMN14652842 SRR11602145 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602153__bin.8 MotaGutierrezJ_2021__SRR11602153__bin.8 Bacillota;Bacilli;Bacillales_H;Bacillaceae_D;Shouchella Shouchella rhizosphaerae chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602145__bin.4 91.52 1.54 103 3994167 46.1 68228 SAMN14652842 SRR11602145 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. TomarS_2023__SRR15925267__bin.15 TomarS_2023__SRR15925267__bin.15 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus licheniformis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602145__bin.5 91.82 2.04 74 1760527 44.81 38340 SAMN14652842 SRR11602145 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602145__bin.5 MotaGutierrezJ_2021__SRR11602145__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus viscerum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602145__bin.8 100 1.08 24 3938156 43.8 516320 SAMN14652842 SRR11602145 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602153__bin.4 MotaGutierrezJ_2021__SRR11602153__bin.4 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus subtilis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602146__bin.12 99.93 1.91 401 4066066 44.92 17306 SAMN14652859 SRR11602146 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602153__bin.8 MotaGutierrezJ_2021__SRR11602153__bin.8 Bacillota;Bacilli;Bacillales_H;Bacillaceae_D;Shouchella Shouchella rhizosphaerae chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602146__bin.14 90.92 0.64 98 1970974 33.72 36888 SAMN14652859 SRR11602146 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. GCF_001436735.1_ASM143673v1_genomic GCF_001436735.1_ASM143673v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus cacaonum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602146__bin.2 92.34 3.24 107 2208274 57.93 34911 SAMN14652859 SRR11602146 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. SRR10454486C2703_ghanensis_assembly MotaGutierrezJ_2021__SRR11602146__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter ghanensis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602147__bin.12 93.3 4.96 253 2109045 36.9 13989 SAMN14652858 SRR11602147 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK045-2-G-48h-04C3_S121__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602147__bin.18 53.2 0.05 32 1029855 33.86 60134 SAMN14652858 SRR11602147 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. GCF_001436735.1_ASM143673v1_genomic GCF_001436735.1_ASM143673v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus cacaonum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602147__bin.19 76.93 4.85 445 1991013 58.75 5408 SAMN14652858 SRR11602147 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. SRR10454516C127_okinawensis_assembly MotaGutierrezJ_2021__SRR11602147__bin.19 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter okinawensis A chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602147__bin.23 99.99 1.48 132 2870224 44.9 31875 SAMN14652858 SRR11602147 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602147__bin.7 91.92 1.09 220 1630478 53.25 9791 SAMN14652858 SRR11602147 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. FontanaF_2023__SRR20746839__bin.4 MotaGutierrezJ_2021__SRR11602147__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602147__bin.9 51.95 2.08 572 1693432 57.57 3119 SAMN14652858 SRR11602147 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. G_361_1B_senegalensis_assembly MotaGutierrezJ_2021__SRR11602147__bin.9 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter senegalensis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602148__bin.1 99.99 2.79 88 2695571 38.91 95455 SAMN14652857 SRR11602148 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602148__bin.1 MotaGutierrezJ_2021__SRR11602148__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus suebicus chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602148__bin.12 99.91 4.85 88 3532532 46.3 68413 SAMN14652857 SRR11602148 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. GCF_001435975.1_ASM143597v1_genomic MotaGutierrezJ_2021__SRR11602140__bin.27 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Secundilactobacillus Secundilactobacillus collinoides chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602148__bin.17 63.01 2.56 139 1540425 57.93 14910 SAMN14652857 SRR11602148 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. SRR10454486C2703_ghanensis_assembly MotaGutierrezJ_2021__SRR11602154__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter ghanensis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602148__bin.18 99.69 0.12 74 2275032 46.13 60761 SAMN14652857 SRR11602148 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602150__bin.9 MotaGutierrezJ_2021__SRR11602150__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602148__bin.23 98.89 1.44 204 2382086 38.36 34942 SAMN14652857 SRR11602148 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MotaGutierrezJ_2021__SRR11602140__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602148__bin.24 94.51 2.68 300 2887487 60.92 13430 SAMN14652857 SRR11602148 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. OlgaP_2019__SRR11910536__bin.9 MotaGutierrezJ_2021__SRR11602150__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas hansenii chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602148__bin.36 54.92 0.21 6 1199305 36.89 531753 SAMN14652857 SRR11602148 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602148__bin.4 99.2 0.62 201 2484519 45.14 17112 SAMN14652857 SRR11602148 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. FalardeauJ_2023__SRR20811279__bin.3 MotaGutierrezJ_2021__SRR11602148__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602148__bin.7 52.78 0.42 17 1180973 36.71 129809 SAMN14652857 SRR11602148 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK045-2-G-48h-04C3_S121__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602149__bin.11 84.38 4.21 845 4027194 58.34 5747 SAMN14652856 SRR11602149 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602140__bin.22 MotaGutierrezJ_2021__SRR11602149__bin.11 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Pantoea Pantoea dispersa chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602149__bin.14 53.03 0.13 24 1035108 39.7 70319 SAMN14652856 SRR11602149 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MotaGutierrezJ_2021__SRR11602140__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602149__bin.18 99.91 0.18 90 2232085 46.13 53293 SAMN14652856 SRR11602149 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602150__bin.9 MotaGutierrezJ_2021__SRR11602150__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602149__bin.2 81.21 0.16 28 1643718 33.81 78569 SAMN14652856 SRR11602149 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. GCF_001436735.1_ASM143673v1_genomic GCF_001436735.1_ASM143673v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus cacaonum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602149__bin.26 94.37 4.21 170 2907564 60.95 24709 SAMN14652856 SRR11602149 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. OlgaP_2019__SRR11910536__bin.9 MotaGutierrezJ_2021__SRR11602150__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas hansenii chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602149__bin.27 95.77 1.53 829 5870583 65.7 9383 SAMN14652856 SRR11602149 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602149__bin.27 MotaGutierrezJ_2021__SRR11602149__bin.27 Pseudomonadota;Alphaproteobacteria;Rhizobiales;Xanthobacteraceae;Rhodopseudomonas Rhodopseudomonas sp001295845 chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602149__bin.33 71.24 3.35 328 1450399 38.48 5602 SAMN14652856 SRR11602149 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602156__bin.13 MotaGutierrezJ_2021__SRR11602154__bin.38 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus amylovorus chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602149__bin.6 99.99 3.84 209 2768373 44.93 20588 SAMN14652856 SRR11602149 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. FalardeauJ_2023__SRR20811279__bin.3 MotaGutierrezJ_2021__SRR11602148__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602150__bin.1 98.12 0.82 207 2571770 45.04 18728 SAMN14652855 SRR11602150 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. FalardeauJ_2023__SRR20811279__bin.3 MotaGutierrezJ_2021__SRR11602148__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602150__bin.10 89.07 4.03 447 3124205 46.47 9297 SAMN14652855 SRR11602150 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. GCF_001435975.1_ASM143597v1_genomic MotaGutierrezJ_2021__SRR11602140__bin.27 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Secundilactobacillus Secundilactobacillus collinoides chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602150__bin.13 100 3.6 162 3021356 38.7 82717 SAMN14652855 SRR11602150 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602148__bin.1 MotaGutierrezJ_2021__SRR11602148__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus suebicus chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602150__bin.15 57.46 0.74 738 2023213 64.03 2809 SAMN14652855 SRR11602150 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602152__bin.2 MotaGutierrezJ_2021__SRR11602152__bin.2 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Rhodanobacteraceae;Frateuria Frateuria aurantia chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602150__bin.16 99.55 3.4 368 2377847 38.51 9757 SAMN14652855 SRR11602150 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MotaGutierrezJ_2021__SRR11602140__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602150__bin.23 71.26 2.91 908 3508324 57.59 4352 SAMN14652855 SRR11602150 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602150__bin.23 MotaGutierrezJ_2021__SRR11602150__bin.23 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Pantoea Pantoea anthophila chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602150__bin.4 92.68 2.44 600 3155994 72.18 6653 SAMN14652855 SRR11602150 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602150__bin.4 MotaGutierrezJ_2021__SRR11602150__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Curtobacterium Curtobacterium citreum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602150__bin.6 93.59 0.63 111 2578393 61.24 42228 SAMN14652855 SRR11602150 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. OlgaP_2019__SRR11910536__bin.9 MotaGutierrezJ_2021__SRR11602150__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas hansenii chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602150__bin.8 76.48 0.27 18 1715797 36.99 171543 SAMN14652855 SRR11602150 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK045-2-G-48h-04C3_S121__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602150__bin.9 99.42 0 110 2314175 46.01 34733 SAMN14652855 SRR11602150 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602150__bin.9 MotaGutierrezJ_2021__SRR11602150__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602151__bin.10 88.57 4.63 515 2639888 60.25 6599 SAMN14652854 SRR11602151 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.6 MotaGutierrezJ_2021__SRR11602151__bin.10 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter papayae chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602151__bin.12 89.34 0.98 127 2792854 60.74 38486 SAMN14652854 SRR11602151 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. OlgaP_2019__SRR11910536__bin.9 MotaGutierrezJ_2021__SRR11602150__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas hansenii chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602151__bin.32 99.14 4.39 251 2708050 36.29 26250 SAMN14652854 SRR11602151 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MotaGutierrezJ_2021__SRR11602143__bin.21 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602151__bin.37 99.99 1.59 140 2956539 44.86 30817 SAMN14652854 SRR11602151 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602152__bin.13 80.78 0.17 59 1924392 46.2 80200 SAMN14652853 SRR11602152 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602150__bin.9 MotaGutierrezJ_2021__SRR11602150__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602152__bin.2 99.97 0.35 165 3400679 63.79 39162 SAMN14652853 SRR11602152 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602152__bin.2 MotaGutierrezJ_2021__SRR11602152__bin.2 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Rhodanobacteraceae;Frateuria Frateuria aurantia chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602152__bin.34 95.65 1.78 207 2901472 60.63 21175 SAMN14652853 SRR11602152 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. OlgaP_2019__SRR11910536__bin.9 MotaGutierrezJ_2021__SRR11602150__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas hansenii chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602152__bin.40 99.93 1.77 202 2648355 44.98 18222 SAMN14652853 SRR11602152 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. FalardeauJ_2023__SRR20811279__bin.3 MotaGutierrezJ_2021__SRR11602148__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602153__bin.10 78.3 0.39 115 1965471 57.66 28608 SAMN14652852 SRR11602153 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. SRR10454486C2703_ghanensis_assembly MotaGutierrezJ_2021__SRR11602153__bin.10 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter ghanensis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602153__bin.15 95.6 1.69 118 4045206 46.24 56557 SAMN14652852 SRR11602153 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. TomarS_2023__SRR15925267__bin.15 TomarS_2023__SRR15925267__bin.15 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus licheniformis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602153__bin.2 79.3 0.85 42 1614998 44.89 58090 SAMN14652852 SRR11602153 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602145__bin.5 MotaGutierrezJ_2021__SRR11602145__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus viscerum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602153__bin.22 99.82 2.73 294 3573062 37.59 21533 SAMN14652852 SRR11602153 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MAG_608 MotaGutierrezJ_2021__SRR11602145__bin.1 Bacillota;Bacilli;Bacillales_B;Caldibacillaceae;Caldifermentibacillus Caldifermentibacillus hisashii chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602153__bin.23 76.03 4.23 546 3386341 38.17 8377 SAMN14652852 SRR11602153 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. LeechJ_xxxx__AF52__bin.1 MotaGutierrezJ_2021__SRR11602153__bin.23 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Lysinibacillus Lysinibacillus boronitolerans chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602153__bin.4 100 0.13 33 4011817 43.62 278608 SAMN14652852 SRR11602153 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602153__bin.4 MotaGutierrezJ_2021__SRR11602153__bin.4 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus subtilis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602153__bin.6 82.83 3.56 116 3179725 35.25 44500 SAMN14652852 SRR11602153 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602145__bin.17 MotaGutierrezJ_2021__SRR11602145__bin.17 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Ureibacillus Ureibacillus galli chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602153__bin.7 67.6 0.68 67 1239681 37.96 35617 SAMN14652852 SRR11602153 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602156__bin.13 MotaGutierrezJ_2021__SRR11602156__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus amylovorus chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602153__bin.8 99.27 0.91 267 3840885 44.99 27875 SAMN14652852 SRR11602153 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602153__bin.8 MotaGutierrezJ_2021__SRR11602153__bin.8 Bacillota;Bacilli;Bacillales_H;Bacillaceae_D;Shouchella Shouchella rhizosphaerae chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602154__bin.1 80.02 2.92 180 1964544 57.79 15408 SAMN14652851 SRR11602154 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. SRR10454486C2703_ghanensis_assembly MotaGutierrezJ_2021__SRR11602154__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter ghanensis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602154__bin.10 99.83 1.19 37 1708380 39.43 93071 SAMN14652851 SRR11602154 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MotaGutierrezJ_2021__SRR11602140__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602154__bin.15 95.53 3.81 250 3172264 60.11 19254 SAMN14652851 SRR11602154 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. OlgaP_2019__SRR11910536__bin.9 MotaGutierrezJ_2021__SRR11602150__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas hansenii chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602154__bin.16 90.76 0.7 219 2570062 44.98 16669 SAMN14652851 SRR11602154 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. FalardeauJ_2023__SRR20811279__bin.3 MotaGutierrezJ_2021__SRR11602148__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602154__bin.19 98.07 0.13 88 2257733 45.95 49005 SAMN14652851 SRR11602154 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602150__bin.9 MotaGutierrezJ_2021__SRR11602150__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602154__bin.26 76.16 0.27 19 1669392 36.93 145293 SAMN14652851 SRR11602154 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK045-2-G-48h-04C3_S121__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602154__bin.38 60.03 0.89 63 990627 38.74 24613 SAMN14652851 SRR11602154 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602156__bin.13 MotaGutierrezJ_2021__SRR11602154__bin.38 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus amylovorus chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602155__bin.11 64.09 3.5 122 1598329 57.91 21269 SAMN14652850 SRR11602155 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. SRR10454486C2703_ghanensis_assembly MotaGutierrezJ_2021__SRR11602146__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter ghanensis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602155__bin.12 88.09 0.82 149 1642324 53.34 17908 SAMN14652850 SRR11602155 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. FontanaF_2023__SRR20746839__bin.4 MotaGutierrezJ_2021__SRR11602141__bin.21 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602155__bin.17 100 4.05 165 2417363 36.72 29602 SAMN14652850 SRR11602155 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602155__bin.21 62.99 1 313 1790855 59.21 7794 SAMN14652850 SRR11602155 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. SRR10454516C127_okinawensis_assembly MotaGutierrezJ_2021__SRR11602155__bin.21 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter okinawensis A chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602155__bin.25 67.79 1.09 92 1951012 45.31 36142 SAMN14652850 SRR11602155 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602155__bin.26 64.13 0.05 38 1328567 33.86 55795 SAMN14652850 SRR11602155 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. GCF_001436735.1_ASM143673v1_genomic GCF_001436735.1_ASM143673v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus cacaonum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602155__bin.28 57.39 0.34 548 1838889 57.44 3566 SAMN14652850 SRR11602155 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. G_361_1B_senegalensis_assembly MotaGutierrezJ_2021__SRR11602155__bin.28 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter senegalensis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602156__bin.12 72.99 1.69 61 1759596 58.33 43934 SAMN14652841 SRR11602156 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. SRR10454486C2703_ghanensis_assembly MotaGutierrezJ_2021__SRR11602146__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter ghanensis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602156__bin.13 74.54 0.81 101 1416228 37.98 27450 SAMN14652841 SRR11602156 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602156__bin.13 MotaGutierrezJ_2021__SRR11602156__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus amylovorus chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602156__bin.17 55.94 2.55 483 1482989 60.15 3292 SAMN14652841 SRR11602156 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MAG_15 MotaGutierrezJ_2021__SRR11602156__bin.17 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602156__bin.19 68.22 2.67 845 2869922 44.92 3786 SAMN14652841 SRR11602156 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602153__bin.8 MotaGutierrezJ_2021__SRR11602156__bin.19 Bacillota;Bacilli;Bacillales_H;Bacillaceae_D;Shouchella Shouchella rhizosphaerae chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602156__bin.20 65.35 1.14 56 1373075 33.59 51414 SAMN14652841 SRR11602156 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. GCF_001436735.1_ASM143673v1_genomic GCF_001436735.1_ASM143673v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus cacaonum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602156__bin.5 89.78 0.03 29 3647130 43.97 278478 SAMN14652841 SRR11602156 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602153__bin.4 MotaGutierrezJ_2021__SRR11602153__bin.4 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus subtilis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602156__bin.6 99.98 1.84 233 2956861 44.92 20359 SAMN14652841 SRR11602156 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602157__bin.14 69.03 0.35 46 1476818 33.97 76472 SAMN14652840 SRR11602157 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. GCF_001436735.1_ASM143673v1_genomic GCF_001436735.1_ASM143673v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus cacaonum chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602157__bin.35 99.94 3.74 375 4192704 44.83 19791 SAMN14652840 SRR11602157 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602153__bin.8 MotaGutierrezJ_2021__SRR11602153__bin.8 Bacillota;Bacilli;Bacillales_H;Bacillaceae_D;Shouchella Shouchella rhizosphaerae chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MotaGutierrezJ_2021__SRR11602157__bin.7 87.19 4.85 716 3590513 44.1 6356 SAMN14652840 SRR11602157 Mexico PRJNA627182 SRP258228 NCBI Mota-Gutierrez J, Ferrocino I, Giordano M, Suarez-Quiroz ML, Gonzalez-Ríos O, Cocolin L. Influence of Taxonomic and Functional Content of Microbial Communities on the Quality of Fermented Cocoa Pulp-Bean Mass. Appl Environ Microbiol. 2021 Jun 25;87(14):e0042521. doi: 10.1128/AEM.00425-21. MotaGutierrezJ_2021__SRR11602153__bin.4 MotaGutierrezJ_2021__SRR11602153__bin.4 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus subtilis chocolate cocoa Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days GCF_918814575.1_ASM91881457v1_genomic 99.18 0.41 19 1926695 38.07 201261 GCF_918814575.1 GCF_918814575.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_918814575.1_ASM91881457v1_genomic GCF_918814575.1_ASM91881457v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Periweissella Periweissella fabaria chocolate cocoa_bean_fermentation_ghana Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days GCF_918814755.1_ASM91881475v1_genomic 98.91 0.68 66 1988014 39.56 59410 GCF_918814755.1 GCF_918814755.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_918814755.1_ASM91881475v1_genomic GCF_918814755.1_ASM91881475v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Periweissella Periweissella ghanensis chocolate cocoa_bean_fermentation_ghana Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days GCF_000498955.2_NMG01_genomic 99.07 1.39 170 3275891 45.04 33724 GCF_000498955.2_NMG01_genomic GCF_000498955.2_NMG01_genomic NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_000498955.2_NMG01_genomic GCF_000498955.2_NMG01_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus fabifermentans chocolate cocoa_bean_heap_fermentation Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days GCF_001436735.1_ASM143673v1_genomic 99.48 0 12 1917585 33.86 269985 GCF_001436735.1 GCF_001436735.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001436735.1_ASM143673v1_genomic GCF_001436735.1_ASM143673v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus cacaonum chocolate cocoa_bean_heap_fermentation Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days GCF_001435235.1_ASM143523v1_genomic 99.48 1.35 24 2602462 37.08 241714 GCF_001435235.1 GCF_001435235.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 GCF_001435235.1_ASM143523v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus ghanensis chocolate cocoa_fermentation Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days MAG_4 61.11 1.47 644 1531659 52.74 2438 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. G_514_1B_orientalis_assembly MAG_4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_21 76.94 6.25 565 1803660 35.25 3487 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_501 MAG_21 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_24 50.34 1.72 453 1986641 45.1 5228 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_24 MAG_24 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus bifermentans coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_25 80.27 2.09 510 1666608 35.23 3639 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_501 MAG_25 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_70 88.25 2.78 553 2209237 51.06 4773 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LimaC_2020__SRR9640356__bin.14 MAG_70 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter thailandicus coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_91 66.09 8.46 331 999661 35.79 3261 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_501 MAG_91 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_95 54.25 1.76 401 986987 39.16 2452 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MAG_95 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_109 68.97 0 450 1849343 51.73 4897 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LimaC_2020__SRR9640356__bin.14 MAG_109 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter thailandicus coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_116 51.9 1.59 467 1136767 38.83 2357 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_116 MAG_116 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_123 68.31 4.44 741 1882965 52.75 2591 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. G_514_1B_orientalis_assembly MAG_123 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_133 69.66 2.95 699 1840367 53.1 2712 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. G_514_1B_orientalis_assembly MAG_133 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_136 61.77 3.4 1021 2562264 56.72 2566 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. EBC_082.15 MAG_136 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Kosakonia Kosakonia cowanii coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_140 84.26 4.7 833 2922080 64.11 3912 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_140 MAG_140 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Rhodanobacteraceae;Frateuria NA coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_146 67.87 2.88 726 1923449 52.89 2759 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. G_514_1B_orientalis_assembly MAG_146 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_149 71.34 0.7 515 1887297 34.34 4154 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MAG_149 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_152 54.16 3.24 366 960179 38.43 2651 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LeechJ_xxxx__AF84__bin.19 PothakosV_2020__ERS2068301__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc_B Leuconostoc B fallax coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_171 82.61 1.96 635 2126997 51 3712 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LimaC_2020__SRR9640356__bin.14 MAG_171 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter thailandicus coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_182 66.87 4.77 1455 3990450 53.55 2851 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. KharnaiorP_2023__SRR22859377__bin.2 MAG_182 Pseudomonadota;Alphaproteobacteria;Rhizobiales;Rhizobiaceae;Brucella Brucella pseudogrignonensis coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_190 88.32 2.44 592 2214882 50.85 4237 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LimaC_2020__SRR9640356__bin.14 MAG_190 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter thailandicus coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_199 83.1 4.92 879 2848261 64.03 3647 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_140 MAG_199 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Rhodanobacteraceae;Frateuria NA coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_200 52.23 8.62 1006 5234162 49.62 6114 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_200 MAG_200 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Tatumella Tatumella punctata coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_326 80.65 3.96 531 2034858 51 4343 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LimaC_2020__SRR9640356__bin.14 MAG_326 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter thailandicus coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_327 79.19 4.96 874 2683884 64.15 3277 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_140 MAG_327 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Rhodanobacteraceae;Frateuria NA coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_328 73.84 4.68 1248 3927980 59.41 3340 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_329 MAG_328 Pseudomonadota;Alphaproteobacteria;Rhizobiales;Rhizobiaceae;Agrobacterium Agrobacterium cucumeris coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_329 64.67 2.33 1160 3287469 59.5 2946 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_329 MAG_329 Pseudomonadota;Alphaproteobacteria;Rhizobiales;Rhizobiaceae;Agrobacterium Agrobacterium cucumeris coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_330 100 1.25 59 4208344 74.67 168921 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. PothakosV_2020__ERS2068300__bin.15 PothakosV_2020__ERS2068300__bin.15 Actinomycetota;Actinomycetes;Actinomycetales;Cellulomonadaceae;Cellulosimicrobium Cellulosimicrobium funkei coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_331 51.72 6.9 653 2043018 52.18 3373 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_331 MAG_331 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Pectobacterium Pectobacterium brasiliense coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_332 79.71 5.34 836 2670464 64.18 3417 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_140 MAG_332 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Rhodanobacteraceae;Frateuria NA coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_333 51.9 0 827 2616114 63.19 3458 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_333 MAG_333 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E parafulva coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_334 97.73 4.14 163 2844712 48 30515 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_334 MAG_334 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus NA coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_335 80.41 4.13 840 2809887 64.23 3645 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_140 MAG_335 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Rhodanobacteraceae;Frateuria NA coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_336 62.46 3.51 499 1515727 43.38 3186 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LeechJ_xxxx__AF68__bin.3 MAG_336 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus vaccinostercus coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_337 58.09 6.91 1452 3724910 34.14 2551 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MAG_337 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_338 57.56 2.4 685 2334737 34.32 3654 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MAG_338 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_339 54.89 1.72 934 2185382 54.69 2341 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. G_514_1B_orientalis_assembly MAG_339 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_340 56.32 8.3 318 1424385 38.85 5615 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LeechJ_xxxx__AF84__bin.19 MAG_347 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc_B Leuconostoc B fallax coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_341 66.32 3.44 274 927588 41.91 3409 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LeechJ_xxxx__AF68__bin.3 MAG_341 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus vaccinostercus coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_342 87.09 2.42 329 1560889 38.09 5796 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LeechJ_xxxx__AF68__bin.1 MAG_342 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus hircilactis coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_343 68.62 1.45 344 1234185 39.75 3935 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ShangpliangH_2023_a__SRR22851168__bin.15 MAG_343 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A chungangensis coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_344 84.88 4.95 583 2079923 37.69 4081 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LeechJ_xxxx__AF84__bin.19 PothakosV_2020__ERS2068302__bin.24 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc_B Leuconostoc B fallax coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_345 63.03 4.99 749 2100272 64.47 2888 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_140 MAG_345 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Rhodanobacteraceae;Frateuria NA coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_346 73.01 3.45 690 2616520 35.64 4307 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MAG_346 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_347 85.78 5.37 443 1833311 38.18 4900 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LeechJ_xxxx__AF84__bin.19 MAG_347 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc_B Leuconostoc B fallax coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days MAG_348 58.56 0.66 401 1317154 51.22 3594 ['SAMEA104450356', 'SAMEA104450357', 'SAMEA104450358', 'SAMEA104450359', 'SAMEA104450360', 'SAMEA104450361'] ['ERR2231567', 'ERR2231568', 'ERR2231569', 'ERR2231570', 'ERR2231571', 'ERR2231572'] Ecuador PRJEB24129 ERP105934 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LimaC_2020__SRR9640356__bin.14 MAG_348 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter thailandicus coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days PothakosV_2020__ERS2068298__bin.19 100 2.986512524 103 4206324 74.73 66905 ERS2068298 ERR2231567 Ecuador PRJEB24129 ERP105934 NCBI Pothakos, V., De Vuyst, L., Zhang, S.J., De Bruyn, F., Verce, M., Torres, J., Callanan, M., Moccand, C., and Weckx, S. (2020). Temporal shotgun metagenomics of an Ecuadorian coffee fermentation process highlights the predominance of lactic acid bacteria. Curr. Res. Biotechnol. 2, 1–15. PothakosV_2020__ERS2068300__bin.15 PothakosV_2020__ERS2068300__bin.15 Actinomycetota;Actinomycetes;Actinomycetales;Cellulomonadaceae;Cellulosimicrobium Cellulosimicrobium funkei coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days PothakosV_2020__ERS2068298__bin.5 78.15117959 2.698628072 554 2020337 51.19 4153 ERS2068298 ERR2231567 Ecuador PRJEB24129 ERP105934 NCBI Pothakos, V., De Vuyst, L., Zhang, S.J., De Bruyn, F., Verce, M., Torres, J., Callanan, M., Moccand, C., and Weckx, S. (2020). Temporal shotgun metagenomics of an Ecuadorian coffee fermentation process highlights the predominance of lactic acid bacteria. Curr. Res. Biotechnol. 2, 1–15. LimaC_2020__SRR9640356__bin.14 PothakosV_2020__ERS2068298__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter thailandicus coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days PothakosV_2020__ERS2068298__bin.20 72.8557599 4.568512187 858 2285698 64.35 2722 ERS2068298 ERR2231567 Ecuador PRJEB24129 ERP105934 NCBI Pothakos, V., De Vuyst, L., Zhang, S.J., De Bruyn, F., Verce, M., Torres, J., Callanan, M., Moccand, C., and Weckx, S. (2020). Temporal shotgun metagenomics of an Ecuadorian coffee fermentation process highlights the predominance of lactic acid bacteria. Curr. Res. Biotechnol. 2, 1–15. MAG_140 PothakosV_2020__ERS2068298__bin.20 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Rhodanobacteraceae;Frateuria NA coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days PothakosV_2020__ERS2068299__bin.5 76.63885398 3.674242424 837 2435350 34.88 3041 ERS2068299 ERR2231568 Ecuador PRJEB24129 ERP105934 NCBI Pothakos, V., De Vuyst, L., Zhang, S.J., De Bruyn, F., Verce, M., Torres, J., Callanan, M., Moccand, C., and Weckx, S. (2020). Temporal shotgun metagenomics of an Ecuadorian coffee fermentation process highlights the predominance of lactic acid bacteria. Curr. Res. Biotechnol. 2, 1–15. MAG_501 PothakosV_2020__ERS2068299__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days PothakosV_2020__ERS2068299__bin.13 99.22928709 1.541425819 132 4208576 74.72 53077 ERS2068299 ERR2231568 Ecuador PRJEB24129 ERP105934 NCBI Pothakos, V., De Vuyst, L., Zhang, S.J., De Bruyn, F., Verce, M., Torres, J., Callanan, M., Moccand, C., and Weckx, S. (2020). Temporal shotgun metagenomics of an Ecuadorian coffee fermentation process highlights the predominance of lactic acid bacteria. Curr. Res. Biotechnol. 2, 1–15. PothakosV_2020__ERS2068300__bin.15 PothakosV_2020__ERS2068300__bin.15 Actinomycetota;Actinomycetes;Actinomycetales;Cellulomonadaceae;Cellulosimicrobium Cellulosimicrobium funkei coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days PothakosV_2020__ERS2068299__bin.29 76.297609 4.026661318 868 2597927 64.2 3232 ERS2068299 ERR2231568 Ecuador PRJEB24129 ERP105934 NCBI Pothakos, V., De Vuyst, L., Zhang, S.J., De Bruyn, F., Verce, M., Torres, J., Callanan, M., Moccand, C., and Weckx, S. (2020). Temporal shotgun metagenomics of an Ecuadorian coffee fermentation process highlights the predominance of lactic acid bacteria. Curr. Res. Biotechnol. 2, 1–15. MAG_140 PothakosV_2020__ERS2068299__bin.29 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Rhodanobacteraceae;Frateuria NA coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days PothakosV_2020__ERS2068299__bin.14 58.21193299 4.789196311 1153 3144137 53.43 2789 ERS2068299 ERR2231568 Ecuador PRJEB24129 ERP105934 NCBI Pothakos, V., De Vuyst, L., Zhang, S.J., De Bruyn, F., Verce, M., Torres, J., Callanan, M., Moccand, C., and Weckx, S. (2020). Temporal shotgun metagenomics of an Ecuadorian coffee fermentation process highlights the predominance of lactic acid bacteria. Curr. Res. Biotechnol. 2, 1–15. KharnaiorP_2023__SRR22859377__bin.2 PothakosV_2020__ERS2068299__bin.14 Pseudomonadota;Alphaproteobacteria;Rhizobiales;Rhizobiaceae;Brucella Brucella pseudogrignonensis coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days PothakosV_2020__ERS2068299__bin.21 58.35985805 2.42886651 1199 3069245 59.5 2608 ERS2068299 ERR2231568 Ecuador PRJEB24129 ERP105934 NCBI Pothakos, V., De Vuyst, L., Zhang, S.J., De Bruyn, F., Verce, M., Torres, J., Callanan, M., Moccand, C., and Weckx, S. (2020). Temporal shotgun metagenomics of an Ecuadorian coffee fermentation process highlights the predominance of lactic acid bacteria. Curr. Res. Biotechnol. 2, 1–15. MAG_329 MAG_329 Pseudomonadota;Alphaproteobacteria;Rhizobiales;Rhizobiaceae;Agrobacterium Agrobacterium cucumeris coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days PothakosV_2020__ERS2068299__bin.22 59.6 0.5 1399 8652526 39.27 8249 ERS2068299 ERR2231568 Ecuador PRJEB24129 ERP105934 NCBI Pothakos, V., De Vuyst, L., Zhang, S.J., De Bruyn, F., Verce, M., Torres, J., Callanan, M., Moccand, C., and Weckx, S. (2020). Temporal shotgun metagenomics of an Ecuadorian coffee fermentation process highlights the predominance of lactic acid bacteria. Curr. Res. Biotechnol. 2, 1–15. LeechJ_2020__ERS3967694__bin.3 PothakosV_2020__ERS2068299__bin.22 Ascomycota;Saccharomycetes;Saccharomycetales;unknown;Starmerella Starmerella bacillaris coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days PothakosV_2020__ERS2068300__bin.15 100 1.107899807 198 4216533 74.7 35015 ERS2068300 ERR2231569 Ecuador PRJEB24129 ERP105934 NCBI Pothakos, V., De Vuyst, L., Zhang, S.J., De Bruyn, F., Verce, M., Torres, J., Callanan, M., Moccand, C., and Weckx, S. (2020). Temporal shotgun metagenomics of an Ecuadorian coffee fermentation process highlights the predominance of lactic acid bacteria. Curr. Res. Biotechnol. 2, 1–15. PothakosV_2020__ERS2068300__bin.15 PothakosV_2020__ERS2068300__bin.15 Actinomycetota;Actinomycetes;Actinomycetales;Cellulomonadaceae;Cellulosimicrobium Cellulosimicrobium funkei coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days PothakosV_2020__ERS2068300__bin.24 65.95701736 3.954536125 821 2055021 64.34 2574 ERS2068300 ERR2231569 Ecuador PRJEB24129 ERP105934 NCBI Pothakos, V., De Vuyst, L., Zhang, S.J., De Bruyn, F., Verce, M., Torres, J., Callanan, M., Moccand, C., and Weckx, S. (2020). Temporal shotgun metagenomics of an Ecuadorian coffee fermentation process highlights the predominance of lactic acid bacteria. Curr. Res. Biotechnol. 2, 1–15. MAG_140 PothakosV_2020__ERS2068300__bin.24 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Rhodanobacteraceae;Frateuria NA coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days PothakosV_2020__ERS2068301__bin.28 99.42196532 1.445086705 208 4210764 74.76 36302 ERS2068301 ERR2231570 Ecuador PRJEB24129 ERP105934 NCBI Pothakos, V., De Vuyst, L., Zhang, S.J., De Bruyn, F., Verce, M., Torres, J., Callanan, M., Moccand, C., and Weckx, S. (2020). Temporal shotgun metagenomics of an Ecuadorian coffee fermentation process highlights the predominance of lactic acid bacteria. Curr. Res. Biotechnol. 2, 1–15. PothakosV_2020__ERS2068300__bin.15 PothakosV_2020__ERS2068300__bin.15 Actinomycetota;Actinomycetes;Actinomycetales;Cellulomonadaceae;Cellulosimicrobium Cellulosimicrobium funkei coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days PothakosV_2020__ERS2068301__bin.18 83.00257024 4.660033167 540 2041781 51.04 4259 ERS2068301 ERR2231570 Ecuador PRJEB24129 ERP105934 NCBI Pothakos, V., De Vuyst, L., Zhang, S.J., De Bruyn, F., Verce, M., Torres, J., Callanan, M., Moccand, C., and Weckx, S. (2020). Temporal shotgun metagenomics of an Ecuadorian coffee fermentation process highlights the predominance of lactic acid bacteria. Curr. Res. Biotechnol. 2, 1–15. LimaC_2020__SRR9640356__bin.14 MAG_190 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter thailandicus coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days PothakosV_2020__ERS2068301__bin.6 50.12539185 0.862068966 373 1008148 37.77 2753 ERS2068301 ERR2231570 Ecuador PRJEB24129 ERP105934 NCBI Pothakos, V., De Vuyst, L., Zhang, S.J., De Bruyn, F., Verce, M., Torres, J., Callanan, M., Moccand, C., and Weckx, S. (2020). Temporal shotgun metagenomics of an Ecuadorian coffee fermentation process highlights the predominance of lactic acid bacteria. Curr. Res. Biotechnol. 2, 1–15. LeechJ_xxxx__AF84__bin.19 PothakosV_2020__ERS2068301__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc_B Leuconostoc B fallax coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days PothakosV_2020__ERS2068301__bin.17 50.31347962 1.724137931 428 1577272 46.2 4130 ERS2068301 ERR2231570 Ecuador PRJEB24129 ERP105934 NCBI Pothakos, V., De Vuyst, L., Zhang, S.J., De Bruyn, F., Verce, M., Torres, J., Callanan, M., Moccand, C., and Weckx, S. (2020). Temporal shotgun metagenomics of an Ecuadorian coffee fermentation process highlights the predominance of lactic acid bacteria. Curr. Res. Biotechnol. 2, 1–15. FalardeauJ_2023__SRR20811279__bin.3 PothakosV_2020__ERS2068301__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days PothakosV_2020__ERS2068301__bin.4 59.95388669 3.39673913 443 1389482 42.29 3303 ERS2068301 ERR2231570 Ecuador PRJEB24129 ERP105934 NCBI Pothakos, V., De Vuyst, L., Zhang, S.J., De Bruyn, F., Verce, M., Torres, J., Callanan, M., Moccand, C., and Weckx, S. (2020). Temporal shotgun metagenomics of an Ecuadorian coffee fermentation process highlights the predominance of lactic acid bacteria. Curr. Res. Biotechnol. 2, 1–15. LeechJ_xxxx__AF68__bin.3 MAG_336 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus vaccinostercus coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days PothakosV_2020__ERS2068301__bin.27 70.77882534 2.066331418 854 2371617 64.36 2897 ERS2068301 ERR2231570 Ecuador PRJEB24129 ERP105934 NCBI Pothakos, V., De Vuyst, L., Zhang, S.J., De Bruyn, F., Verce, M., Torres, J., Callanan, M., Moccand, C., and Weckx, S. (2020). Temporal shotgun metagenomics of an Ecuadorian coffee fermentation process highlights the predominance of lactic acid bacteria. Curr. Res. Biotechnol. 2, 1–15. MAG_140 PothakosV_2020__ERS2068301__bin.27 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Rhodanobacteraceae;Frateuria NA coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days PothakosV_2020__ERS2068302__bin.3 93.25626204 4.142581888 822 3957570 74.45 5997 ERS2068302 ERR2231571 Ecuador PRJEB24129 ERP105934 NCBI Pothakos, V., De Vuyst, L., Zhang, S.J., De Bruyn, F., Verce, M., Torres, J., Callanan, M., Moccand, C., and Weckx, S. (2020). Temporal shotgun metagenomics of an Ecuadorian coffee fermentation process highlights the predominance of lactic acid bacteria. Curr. Res. Biotechnol. 2, 1–15. PothakosV_2020__ERS2068300__bin.15 PothakosV_2020__ERS2068300__bin.15 Actinomycetota;Actinomycetes;Actinomycetales;Cellulomonadaceae;Cellulosimicrobium Cellulosimicrobium funkei coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days PothakosV_2020__ERS2068302__bin.7 76.9997155 1.865671642 521 1926697 51.17 4004 ERS2068302 ERR2231571 Ecuador PRJEB24129 ERP105934 NCBI Pothakos, V., De Vuyst, L., Zhang, S.J., De Bruyn, F., Verce, M., Torres, J., Callanan, M., Moccand, C., and Weckx, S. (2020). Temporal shotgun metagenomics of an Ecuadorian coffee fermentation process highlights the predominance of lactic acid bacteria. Curr. Res. Biotechnol. 2, 1–15. LimaC_2020__SRR9640356__bin.14 PothakosV_2020__ERS2068302__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter thailandicus coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days PothakosV_2020__ERS2068302__bin.24 83.5452268 3.010471204 504 1819796 38.08 4054 ERS2068302 ERR2231571 Ecuador PRJEB24129 ERP105934 NCBI Pothakos, V., De Vuyst, L., Zhang, S.J., De Bruyn, F., Verce, M., Torres, J., Callanan, M., Moccand, C., and Weckx, S. (2020). Temporal shotgun metagenomics of an Ecuadorian coffee fermentation process highlights the predominance of lactic acid bacteria. Curr. Res. Biotechnol. 2, 1–15. LeechJ_xxxx__AF84__bin.19 PothakosV_2020__ERS2068302__bin.24 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc_B Leuconostoc B fallax coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days PothakosV_2020__ERS2068302__bin.15 64.65517241 4.310344828 856 2226942 64.32 2559 ERS2068302 ERR2231571 Ecuador PRJEB24129 ERP105934 NCBI Pothakos, V., De Vuyst, L., Zhang, S.J., De Bruyn, F., Verce, M., Torres, J., Callanan, M., Moccand, C., and Weckx, S. (2020). Temporal shotgun metagenomics of an Ecuadorian coffee fermentation process highlights the predominance of lactic acid bacteria. Curr. Res. Biotechnol. 2, 1–15. MAG_140 PothakosV_2020__ERS2068302__bin.15 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Rhodanobacteraceae;Frateuria NA coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days PothakosV_2020__ERS2068302__bin.28 88.32769086 3.054101222 214 2393688 48.26 17042 ERS2068302 ERR2231571 Ecuador PRJEB24129 ERP105934 NCBI Pothakos, V., De Vuyst, L., Zhang, S.J., De Bruyn, F., Verce, M., Torres, J., Callanan, M., Moccand, C., and Weckx, S. (2020). Temporal shotgun metagenomics of an Ecuadorian coffee fermentation process highlights the predominance of lactic acid bacteria. Curr. Res. Biotechnol. 2, 1–15. MAG_334 MAG_334 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus NA coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days PothakosV_2020__ERS2068303__bin.13 76.41719616 2.746212121 566 1764902 35.22 3378 ERS2068303 ERR2231572 Ecuador PRJEB24129 ERP105934 NCBI Pothakos, V., De Vuyst, L., Zhang, S.J., De Bruyn, F., Verce, M., Torres, J., Callanan, M., Moccand, C., and Weckx, S. (2020). Temporal shotgun metagenomics of an Ecuadorian coffee fermentation process highlights the predominance of lactic acid bacteria. Curr. Res. Biotechnol. 2, 1–15. MAG_501 MAG_25 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days PothakosV_2020__ERS2068303__bin.6 78.79310345 1.724137931 809 2922222 35.07 3934 ERS2068303 ERR2231572 Ecuador PRJEB24129 ERP105934 NCBI Pothakos, V., De Vuyst, L., Zhang, S.J., De Bruyn, F., Verce, M., Torres, J., Callanan, M., Moccand, C., and Weckx, S. (2020). Temporal shotgun metagenomics of an Ecuadorian coffee fermentation process highlights the predominance of lactic acid bacteria. Curr. Res. Biotechnol. 2, 1–15. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 PothakosV_2020__ERS2068303__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days PothakosV_2020__ERS2068303__bin.9 77.36241831 4.188481675 459 1664871 37.85 4285 ERS2068303 ERR2231572 Ecuador PRJEB24129 ERP105934 NCBI Pothakos, V., De Vuyst, L., Zhang, S.J., De Bruyn, F., Verce, M., Torres, J., Callanan, M., Moccand, C., and Weckx, S. (2020). Temporal shotgun metagenomics of an Ecuadorian coffee fermentation process highlights the predominance of lactic acid bacteria. Curr. Res. Biotechnol. 2, 1–15. LeechJ_xxxx__AF84__bin.19 PothakosV_2020__ERS2068303__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc_B Leuconostoc B fallax coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days PothakosV_2020__ERS2068303__bin.18 51.72413793 1.724137931 230 1519745 48.57 9253 ERS2068303 ERR2231572 Ecuador PRJEB24129 ERP105934 NCBI Pothakos, V., De Vuyst, L., Zhang, S.J., De Bruyn, F., Verce, M., Torres, J., Callanan, M., Moccand, C., and Weckx, S. (2020). Temporal shotgun metagenomics of an Ecuadorian coffee fermentation process highlights the predominance of lactic acid bacteria. Curr. Res. Biotechnol. 2, 1–15. MAG_334 MAG_334 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus NA coffee coffee Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days GCF_001433825.1_ASM143382v1_genomic 98.07 1.25 18 1512572 36.41 234293 GCF_001433825.1 GCF_001433825.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001433825.1_ASM143382v1_genomic GCF_001433825.1_ASM143382v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Apilactobacillus Apilactobacillus kunkeei wine commercial_grape_wine_undergoing_a_sluggishstuck_alcoholic_fermentation Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months GCF_007833675.1_ASM783367v1_genomic 97.93 1.38 1 5689882 39.53 5689882 GCF_007833675.1 GCF_007833675.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_007833675.1_ASM783367v1_genomic GCF_007833675.1_ASM783367v1_genomic Bacteroidota;Bacteroidia;Sphingobacteriales;Sphingobacteriaceae;Pedobacter Pedobacter suwonensis pickle cucumber cucumber Plant Vegetables_Aromatics cucumber pickled vegetables solid none lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967699__bin.3 98.35390947 2.777777778 84 2955367 44.88 50981 ERS3967699 ERR4757814 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum pickle cucumber cucumber Plant Vegetables_Aromatics cucumber pickled vegetables solid none lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967699__bin.4 66.72413793 1.724137931 322 6214574 61.07 28960 ERS3967699 ERR4757814 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967699__bin.4 LeechJ_2020__ERS3967699__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E sp003014915 pickle cucumber cucumber Plant Vegetables_Aromatics cucumber pickled vegetables solid none lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967699__bin.8 52.98245614 0 693 4948193 61.43 9680 ERS3967699 ERR4757814 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967699__bin.8 LeechJ_2020__ERS3967699__bin.8 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E orientalis A pickle cucumber cucumber Plant Vegetables_Aromatics cucumber pickled vegetables solid none lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967699__bin.2 98.01267281 0.376082251 71 4731394 55.21 119535 ERS3967699 ERR4757814 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967699__bin.2 LeechJ_2020__ERS3967699__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E endophytica pickle cucumber cucumber Plant Vegetables_Aromatics cucumber pickled vegetables solid none lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967699__bin.1 98.68852459 0.511839709 59 4973532 53.68 160564 ERS3967699 ERR4757814 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967699__bin.1 LeechJ_2020__ERS3967699__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Rahnella Rahnella rivi pickle cucumber cucumber Plant Vegetables_Aromatics cucumber pickled vegetables solid none lactic mesophilic 1 day - 3 months EBC_147.23 77.74 0.86 315 5334636 52.27 29867 SAMN40633123 SRS20892362 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_147.23 EBC_147.23 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Rahnella Rahnella aceris curtido curtido_96_h Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 1-7 days LeechJ_2020__ERS3967703__bin.5 74.73374296 0.476190476 421 1607698 60.16 4477 ERS3967703 ERR4757818 China PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967706__bin.3 LeechJ_2020__ERS3967703__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium longum pickle daikon daikon Plant Vegetables_Aromatics daikon pickled vegetables solid none lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967703__bin.6 98.02018634 1.086956522 83 1823274 47.09 41467 ERS3967703 ERR4757818 China PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967703__bin.6 LeechJ_2020__ERS3967703__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus mucosae pickle daikon daikon Plant Vegetables_Aromatics daikon pickled vegetables solid none lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967703__bin.3 66.61254562 0.040799674 368 1331982 34.68 3992 ERS3967703 ERR4757818 China PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967711__bin.14 LeechJ_2020__ERS3967703__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus sp910589675 pickle daikon daikon Plant Vegetables_Aromatics daikon pickled vegetables solid none lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967735__bin.13 90.625 0 65 1513556 46.14 57287 ERS3967735 ERR4757850 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis pickle daikon daikon Plant Vegetables_Aromatics daikon pickled vegetables solid none lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967735__bin.11 91.66666667 3.665223665 574 2965349 34.82 7298 ERS3967735 ERR4757850 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MAG_501 LeechJ_2020__ERS3967735__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis pickle daikon daikon Plant Vegetables_Aromatics daikon pickled vegetables solid none lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967735__bin.12 71.91358025 1.234567901 65 1831964 45.32 57018 ERS3967735 ERR4757850 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum pickle daikon daikon Plant Vegetables_Aromatics daikon pickled vegetables solid none lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967735__bin.10 91.14913305 2.579365079 325 1800641 39.09 7644 ERS3967735 ERR4757850 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 LeechJ_2020__ERS3967735__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides pickle daikon daikon Plant Vegetables_Aromatics daikon pickled vegetables solid none lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967735__bin.8 98.75 0.178571429 149 2310152 44.63 22949 ERS3967735 ERR4757850 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. DeFilippisF_xxxx__DF_30__bin.3 LeechJ_2020__ERS3967735__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri pickle daikon daikon Plant Vegetables_Aromatics daikon pickled vegetables solid none lactic mesophilic 1 day - 3 months EBC_095.37 58.62 0 70 3111594 56.54 62091 SAMN40633089 SRS20892325 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_095.37 EBC_095.37 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Erwinia Erwinia sp003937915 kasuzuke daikon_kasuzuke Plant Vegetables_Aromatics daikon pickled vegetables solid low lactic mesophilic 1 day - 3 months GCF_001885995.1_ASM188599v1_genomic 99.01 0 108 2317515 39.03 53900 GCF_001885995.1 GCF_001885995.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001885995.1_ASM188599v1_genomic GCF_001885995.1_ASM188599v1_genomic Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_G Enterococcus G italicus cheese toma dairy_products Animal Dairy milk cheese solid low lactic mesophilic 2-4 months LeechJ_xxxx__AF24__bin.9 97.28983945 2.076406911 173 3498014 44.1 31993 SAMN39472443 SRR27593226 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602153__bin.4 LeechJ_xxxx__AF83__bin.8 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus subtilis dawadawa dawadawa Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days LeechJ_xxxx__AF24__bin.1 98.89502762 0.552486188 95 2423270 35.97 37683 SAMN39472443 SRR27593226 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF24__bin.1 LeechJ_xxxx__AF24__bin.1 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus simulans dawadawa dawadawa Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days LeechJ_xxxx__AF24__bin.6 84.25414365 2.578268877 122 1352325 34.51 17598 SAMN39472443 SRR27593226 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF83__bin.9 LeechJ_xxxx__AF24__bin.6 Bacillota;Bacilli;Staphylococcales;Salinicoccaceae;Nosocomiicoccus Nosocomiicoccus stercorigallinarum dawadawa dawadawa Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days LeechJ_xxxx__AF24__bin.7 92.93478261 3.260869565 288 2057015 34.98 11155 SAMN39472443 SRR27593226 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF57__bin.5 LeechJ_xxxx__AF24__bin.7 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes Atopostipes pullistercoris dawadawa dawadawa Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days EBC_089.11 87.36 4.39 174 2113713 41.71 19246 SAMN40633083 SRS20892315 Nigeria PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_089.11 EBC_089.11 Pseudomonadota;Gammaproteobacteria;Cardiobacteriales;Wohlfahrtiimonadaceae;Ignatzschineria Ignatzschineria cameli dawadawa dawadawa Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days EBC_089.14 78.58 2.36 330 2179964 35.26 8078 SAMN40633083 SRS20892315 Nigeria PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_089.14 EBC_089.14 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Globicatella Globicatella sulfidifaciens dawadawa dawadawa Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days EBC_089.16 96.22 0.54 216 3674286 38.56 25688 SAMN40633083 SRS20892315 Nigeria PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_089.16 EBC_089.16 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Proteus Proteus mirabilis dawadawa dawadawa Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days EBC_089.4 84.65 4.83 234 1844082 48.07 10152 SAMN40633083 SRS20892315 Nigeria PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_089.4 EBC_089.4 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Paenalcaligenes Paenalcaligenes hermetiae dawadawa dawadawa Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days EBC_089.8 72.02 0.55 38 1517370 41.56 69985 SAMN40633083 SRS20892315 Nigeria PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 LeechJ_xxxx__AF47__bin.6 LeechJ_xxxx__AF47__bin.6 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Savagea Savagea sp030152265 dawadawa dawadawa Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days PasolliE_2019__DS002__bin.1 98.36 0.87 170 3293943 46.59 31276 SAMN14677881 SRR11605262 Italy PRJNA603575 SRP258112 NCBI Pasolli E, De Filippis F, Mauriello IE, Cumbo F, Walsh AM, Leech J, Cotter PD, Segata N, Ercolini D. Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat Commun. 2020 May 25;11(1):2610. doi: 10.1038/s41467-020-16438-8. MAG_500 MAG_500 Bacillota;Bacilli;Bacillales_B;Bacillaceae_C;Weizmannia Weizmannia faecalis probiotics dietary_supplement Microbial Microbial microbes probiotics powder low mixed none not applicable EBC_080.1 96.07 3.48 35 4755676 55.63 247589 SAMN40633074 SRS20892308 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_080.1 EBC_080.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Erwinia Erwinia persicina tofu mao doufu dofu_mold Plant Legumes soybean soybean solids semi-solid none lactic mesophilic 1-7 days EBC_080.11 59.66 0 532 2929149 38.46 5872 SAMN40633074 SRS20892308 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 MASTER_WP4_FFoQSI_2__VB06-21__bin.6 EBC_080.11 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter guillouiae tofu mao doufu dofu_mold Plant Legumes soybean soybean solids semi-solid none lactic mesophilic 1-7 days LeechJ_xxxx__AF77__bin.1 92.1 1.8 1302 10786726 38.22 11639 SAMN39472496 SRR27593164 Burkina Faso PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae dolo dolo Plant Grain sorghum beverage liquid medium lactic mesophilic 3-7 days GCF_012396435.1_ASM1239643v1_genomic 98.77 0 27 1818703 36.98 110887 GCF_012396435.1 GCF_012396435.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_012396435.1_ASM1239643v1_genomic GCF_012396435.1_ASM1239643v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella hellenica sausage greek dry_naturally_fermented_greek_sausage Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks LeechJ_2020__ERS3967733__bin.7 80.97740801 2.394057765 304 1638934 46.53 6838 ERS3967733 ERR4757848 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis dukkah sauerkraut dukkah Plant Vegetables_Aromatics cabbage pickled vegetables solid unknown unknown unknown unknown LeechJ_2020__ERS3967733__bin.5 61.1204639 3.549382716 237 2475542 44.77 18483 ERS3967733 ERR4757848 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum dukkah sauerkraut dukkah Plant Vegetables_Aromatics cabbage pickled vegetables solid unknown unknown unknown unknown LeechJ_2020__ERS3967733__bin.4 95.86797682 3.880070547 309 2015364 38.79 8580 ERS3967733 ERR4757848 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 LeechJ_2020__ERS3967733__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides dukkah sauerkraut dukkah Plant Vegetables_Aromatics cabbage pickled vegetables solid unknown unknown unknown unknown LeechJ_2020__ERS3967733__bin.9 66.56441718 1.472392638 145 1472188 45.49 14121 ERS3967733 ERR4757848 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967691__bin.13 LeechJ_2020__ERS3967733__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella cibaria dukkah sauerkraut dukkah Plant Vegetables_Aromatics cabbage pickled vegetables solid unknown unknown unknown unknown LeechJ_2020__ERS3967733__bin.2 99.22839506 1.080246914 167 2188565 38.24 41811 ERS3967733 ERR4757848 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967740__bin.10 LeechJ_2020__ERS3967740__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus parvulus dukkah sauerkraut dukkah Plant Vegetables_Aromatics cabbage pickled vegetables solid unknown unknown unknown unknown LeechJ_xxxx__AF39__bin.1 100 4.07239819 63 1942206 46.28 51460 SAMN39472458 SRR27593210 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 LeechJ_xxxx__AF21__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis emu emu Plant Sugar palm sap beverage liquid low mixed mesophilic 1-2 weeks LeechJ_xxxx__AF39__bin.6 97.54098361 0.819672131 120 1608202 53.48 23012 SAMN39472458 SRR27593210 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF55__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum emu emu Plant Sugar palm sap beverage liquid low mixed mesophilic 1-2 weeks LeechJ_xxxx__AF39__bin.3 89.06299465 3.28811677 195 1078497 45.12 6712 SAMN39472458 SRR27593210 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF21__bin.7 LeechJ_xxxx__AF21__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Fructobacillus Fructobacillus sp028764065 emu emu Plant Sugar palm sap beverage liquid low mixed mesophilic 1-2 weeks LeechJ_xxxx__AF39__bin.5 89.42045035 3.588375449 358 1547690 34.98 4962 SAMN39472458 SRR27593210 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF55__bin.16 LeechJ_xxxx__AF39__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus NA emu emu Plant Sugar palm sap beverage liquid low mixed mesophilic 1-2 weeks LeechJ_xxxx__AF39__bin.7 75.96718473 1.665815458 276 993126 36.31 4240 SAMN39472458 SRR27593210 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_019656075.1_ASM1965607v1_genomic LeechJ_xxxx__AF39__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc palmae emu emu Plant Sugar palm sap beverage liquid low mixed mesophilic 1-2 weeks LeechJ_xxxx__AF39__bin.4 94.8 2.2 1568 10779586 38.37 9240 SAMN39472458 SRR27593210 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 LeechJ_xxxx__AF55__bin.7 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae emu emu Plant Sugar palm sap beverage liquid low mixed mesophilic 1-2 weeks GCF_019655995.1_ASM1965599v1_genomic 99.37 0.28 22 1755314 44 218808 GCF_019655995.1 GCF_019655995.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_019655995.1_ASM1965599v1_genomic GCF_019655995.1_ASM1965599v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc holzapfelii coffee ethiopian_coffee_fermentation Plant Cocoa_Coffee coffee bean coffee solid low lactic mesophilic 1-2 days GCF_001434915.1_ASM143491v1_genomic 99.48 0 47 2228516 37.63 110492 GCF_001434915.1 GCF_001434915.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001434915.1_ASM143491v1_genomic GCF_001434915.1_ASM143491v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus capillatus tofu stinky fermented_brine_used_for_stinky_tofu_production Plant Legumes soybean soybean liquid liquid none lactic mesophilic 3-6 weeks GCF_001434895.1_ASM143489v1_genomic 99.06 1.41 19 2748727 44.23 465554 GCF_001434895.1 GCF_001434895.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001434895.1_ASM143489v1_genomic GCF_001434895.1_ASM143489v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Secundilactobacillus Secundilactobacillus odoratitofui tofu stinky fermented_brine_used_for_stinky_tofu_production Plant Legumes soybean soybean liquid liquid none lactic mesophilic 3-6 weeks GCF_001436595.1_ASM143659v1_genomic 99.38 2.5 133 3461678 46.99 61916 GCF_001436595.1 GCF_001436595.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001436595.1_ASM143659v1_genomic GCF_001436595.1_ASM143659v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Secundilactobacillus Secundilactobacillus similis molasses fermented_cane_molasses_at_alcohol_plants Plant Sugar sugar cane sweetener liquid high lactic mesophilic 1-7 days GCF_025211165.1_ASM2521116v1_genomic 99.18 0 78 1766539 35.45 56951 GCF_025211165.1 GCF_025211165.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_025211165.1_ASM2521116v1_genomic GCF_025211165.1_ASM2521116v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Periweissella Periweissella beninensis cassava fermented_cassava Plant Roots_Tubers cassava starch-based staple semi-solid unknown unknown unknown unknown GCF_000469325.1_ASM46932v1_genomic 99.48 1.05 62 3271684 56.44 139405 GCF_000469325.1 GCF_000469325.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_000469325.1_ASM46932v1_genomic GCF_000469325.1_ASM46932v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus shenzhenensis milk fermented fermented_dairy_beverage Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days GCF_003946085.1_ASM394608v1_genomic 99.38 0 62 2797786 50.49 141854 GCF_003946085.1 GCF_003946085.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946085.1_ASM394608v1_genomic GCF_003946085.1_ASM394608v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus angrenensis milk fermented fermented_dairy_beverage Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days GCF_005405405.1_ASM540540v1_genomic 99.02 0.62 70 2759960 48.74 91851 GCF_005405405.1 GCF_005405405.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_005405405.1_ASM540540v1_genomic GCF_005405405.1_ASM540540v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plajomi fish fermented fermented_fish Animal Seafood fish seafood solid none lactic mesophilic 2-4 weeks GCF_005405425.1_ASM540542v1_genomic 99.02 2.06 37 2749234 48.63 168990 GCF_005405425.1 GCF_005405425.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_005405425.1_ASM540542v1_genomic GCF_005405425.1_ASM540542v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus modestisalitolerans fish fermented fermented_fish Animal Seafood fish seafood solid none lactic mesophilic 2-4 weeks GCF_007988905.1_ASM798890v1_genomic 99.5 0 46 2926833 58.37 181223 GCF_007988905.1 GCF_007988905.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_007988905.1_ASM798890v1_genomic GCF_007988905.1_ASM798890v1_genomic Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter kanchanaburiensis pickle tomato fermented_fruit Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_029025825.1_ASM2902582v1_genomic 99.38 3.16 2 3245144 43.81 3236228 GCF_029025825.1 GCF_029025825.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 FranciosaI_2021__SRR12227952__bin.4 GCF_029025825.1_ASM2902582v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraplantarum pickle pepper fermented_pepper Plant Vegetables_Aromatics chili pepper pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_001039045.1_ASM103904v1_genomic 99.02 3.09 55 2899876 43.5 118101 GCF_001039045.1 GCF_001039045.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001039045.1_ASM103904v1_genomic GCF_001039045.1_ASM103904v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus herbarum pickle radish fermented_radish Plant Vegetables_Aromatics radish pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_000740055.1_ASM74005v1_genomic 98.7 0 79 1855567 42.82 47922 GCF_000740055.1 GCF_000740055.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_000740055.1_ASM74005v1_genomic GCF_000740055.1_ASM74005v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Secundilactobacillus Secundilactobacillus oryzae rice fermented fermented_rice_grain Plant Grain rice starch-based staple semi-solid unknown unknown unknown unknown GCF_001437425.1_ASM143742v1_genomic 99.39 0.12 18 1765112 39.28 314706 GCF_001437425.1 GCF_001437425.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001437425.1_ASM143742v1_genomic GCF_001437425.1_ASM143742v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella minor sausage fermented_sausages Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks GCF_001438705.1_ASM143870v1_genomic 97.12 0 16 1333345 39.67 286295 GCF_001438705.1 GCF_001438705.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001438705.1_ASM143870v1_genomic GCF_001438705.1_ASM143870v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella kandleri sausage fermented_sausages Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks GCF_009600985.1_ASM960098v1_genomic 99.48 4.19 306 2844764 35.75 84876 GCF_009600985.1 GCF_009600985.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 DeFilippisF_xxxx__DS_1__bin.17 DeFilippisF_xxxx__DS_1__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus halodurans sausage fermented_sausages Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 99.46 0 1 1940170 41.93 1940170 ODFM-BA-A-0005-002 ODFM-BA-A-0005-002 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus seafood fermented fermented_seafoods Animal Seafood seafood seafood solid none lactic mesophilic 2-4 weeks ODFM-BA-A-0009-005_Bacillus_velezensis_YJ11-1-4 99.73 0.12 1 4006637 46.42 4006637 ODFM-BA-A-0009-005 ODFM-BA-A-0009-005 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0009-005_Bacillus_velezensis_YJ11-1-4 ODFM-BA-A-0009-005_Bacillus_velezensis_YJ11-1-4 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus velezensis seafood fermented fermented_seafoods Animal Seafood seafood seafood solid none lactic mesophilic 2-4 weeks ODFM-BA-A-0014-003_Alishewanella_jeotgali_KCTC_22429 100 0.17 65 3831357 50.67 127457 ODFM-BA-A-0014-003 ODFM-BA-A-0014-003 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0014-003_Alishewanella_jeotgali_KCTC_22429 ODFM-BA-A-0014-003_Alishewanella_jeotgali_KCTC_22429 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Alishewanella Alishewanella jeotgali seafood fermented fermented_seafoods Animal Seafood seafood seafood solid none lactic mesophilic 2-4 weeks ODFM-BA-A-0033-002_Haladaptatus_cibarius_D43 99.57 0.28 13 3926724 57.76 985075 ODFM-BA-A-0033-002 ODFM-BA-A-0033-002 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0033-002_Haladaptatus_cibarius_D43 ODFM-BA-A-0033-002_Haladaptatus_cibarius_D43 Halobacteriota;Halobacteria;Halobacteriales;Haladaptataceae;Haladaptatus Haladaptatus cibarius seafood fermented fermented_seafoods Animal Seafood seafood seafood solid none lactic mesophilic 2-4 weeks ODFM-BA-A-0034-002_Haloterrigena_jeotgali_A29 99.57 0 20 4131621 64.92 516176 ODFM-BA-A-0034-002 ODFM-BA-A-0034-002 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0034-002_Haloterrigena_jeotgali_A29 ODFM-BA-A-0034-002_Haloterrigena_jeotgali_A29 Halobacteriota;Halobacteria;Halobacteriales;Natrialbaceae;Natrinema Natrinema thermotolerans seafood fermented fermented_seafoods Animal Seafood seafood seafood solid none lactic mesophilic 2-4 weeks ODFM-BA-A-0081-002_Halorubrum_halophilum_CBA1147 99.11 0.76 5 3255273 65.9 2734347 ODFM-BA-A-0081-002 ODFM-BA-A-0081-002 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0081-002_Halorubrum_halophilum_CBA1147 ODFM-BA-A-0081-002_Halorubrum_halophilum_CBA1147 Halobacteriota;Halobacteria;Halobacteriales;Haloferacaceae;Halorubrum Halorubrum sp003990725 seafood fermented fermented_seafoods Animal Seafood seafood seafood solid none lactic mesophilic 2-4 weeks ODFM-BA-A-0107-002_Dietzia_alimentaria_72T 99.41 0 39 3352817 67.34 216003 ODFM-BA-A-0107-002 ODFM-BA-A-0107-002 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0107-002_Dietzia_alimentaria_72T ODFM-BA-A-0107-002_Dietzia_alimentaria_72T Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Dietzia Dietzia alimentaria seafood fermented fermented_seafoods Animal Seafood seafood seafood solid none lactic mesophilic 2-4 weeks ODFM-BA-A-0108-002_Brachybacterium_squillarum_M-6-3T 99.42 0 8 3191479 72.77 809179 ODFM-BA-A-0108-002 ODFM-BA-A-0108-002 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0108-002_Brachybacterium_squillarum_M-6-3T ODFM-BA-A-0108-002_Brachybacterium_squillarum_M-6-3T Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium squillarum seafood fermented fermented_seafoods Animal Seafood seafood seafood solid none lactic mesophilic 2-4 weeks ODFM-BA-A-0109-002_Lentibacillus_jeotgali_GrbiT 100 0.33 31 3775822 42.5 312432 ODFM-BA-A-0109-002 ODFM-BA-A-0109-002 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0109-002_Lentibacillus_jeotgali_GrbiT ODFM-BA-A-0109-002_Lentibacillus_jeotgali_GrbiT Bacillota;Bacilli;Bacillales_D;Amphibacillaceae;Lentibacillus Lentibacillus jeotgali seafood fermented fermented_seafoods Animal Seafood seafood seafood solid none lactic mesophilic 2-4 weeks GCF_003573535.1_ASM357353v1_genomic 99.48 1.31 16 2465902 35.56 266986 GCF_003573535.1 GCF_003573535.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003573535.1_ASM357353v1_genomic GCF_003573535.1_ASM357353v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus formosensis soybean meal fermented fermented_soybean_meal Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-2 weeks GCF_001436135.1_ASM143613v1_genomic 98.95 1.05 19 2059496 53.5 383908 GCF_001436135.1 GCF_001436135.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001436135.1_ASM143613v1_genomic GCF_001436135.1_ASM143613v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus thailandensis miang fermented_tea_leaves_miang Plant Botanical tea leaves pickled vegetables solid none lactic mesophilic variable GCF_001436615.1_ASM143661v1_genomic 99.48 0.52 88 2556876 55.41 70187 GCF_001436615.1 GCF_001436615.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001436615.1_ASM143661v1_genomic GCF_001436615.1_ASM143661v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus camelliae miang fermented_tea_leaves_miang Plant Botanical tea leaves pickled vegetables solid none lactic mesophilic variable GCF_007115095.1_ASM711509v1_genomic 99.38 1.25 40 3060185 47.89 249740 GCF_007115095.1 GCF_007115095.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_007115095.1_ASM711509v1_genomic GCF_007115095.1_ASM711509v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus enshiensis pickle tomato fermented_vegetables Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_008632615.1_ASM863261v1_genomic 98.91 0.27 2 2249893 38.96 2207094 GCF_008632615.1 GCF_008632615.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_008632615.1_ASM863261v1_genomic GCF_008632615.1_ASM863261v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus nenjiangensis pickle mixed vegetables fermented_vegetables Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_001436775.1_ASM143677v1_genomic 98.38 0.87 105 1580019 36.25 28461 GCF_001436775.1 GCF_001436775.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 YasirM_2022__SRR18334997__bin.9 GCF_001436775.1_ASM143677v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus acetotolerans vinegar vinegar Plant Fruit grape vinegar liquid low acetic mesophilic 3-4 weeks GCF_001437605.1_ASM143760v1_genomic 99.23 0.62 81 1760463 36.67 43657 GCF_001437605.1 GCF_001437605.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001437605.1_ASM143760v1_genomic GCF_001437605.1_ASM143760v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus argentinicus sourdough fermented_wheat_flour Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days GCF_001435975.1_ASM143597v1_genomic 99.38 3.28 105 3607353 46.11 91765 GCF_001435975.1 GCF_001435975.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001435975.1_ASM143597v1_genomic GCF_001435975.1_ASM143597v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Secundilactobacillus Secundilactobacillus collinoides cider apple fermenting_apple_juice Plant Fruit apple beverage liquid medium lactic mesophilic 1-3 months GCF_001047075.2_ASM104707v2_genomic 95.03 0.52 21 1550038 43.9 226528 GCF_001047075.2 GCF_001047075.2 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001047075.2_ASM104707v2_genomic GCF_001047075.2_ASM104707v2_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Fructobacillus Fructobacillus ficulneus fig fermented fig Plant Fruit fig fermented pickled fruit solid none lactic mesophilic 1 day - 3 months GCF_001047115.2_ASM104711v2_genomic 97.95 0.52 14 1413268 44.47 283981 GCF_001047115.2 GCF_001047115.2 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001047115.2_ASM104711v2_genomic GCF_001047115.2_ASM104711v2_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Fructobacillus Fructobacillus pseudoficulneus fig fermented fig Plant Fruit fig fermented pickled fruit solid none lactic mesophilic 1 day - 3 months GCF_900187015.1_50465_F01_genomic 99.86 0.18 1 5209973 60.06 5209973 GCF_900187015.1_50465_F01_genomic GCF_900187015.1_50465_F01_genomic NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_900187015.1_50465_F01_genomic GCF_900187015.1_50465_F01_genomic Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Serratia Serratia ficaria fig fermented fig Plant Fruit fig fermented pickled fruit solid none lactic mesophilic 1 day - 3 months GCF_011074885.1_ASM1107488v2_genomic 98.76 0.21 9 13150648 39.87 2936442 GCF_011074885.1 GCF_011074885.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_011074885.1_ASM1107488v2_genomic GCF_011074885.1_ASM1107488v2_genomic Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Brettanomyces Brettanomyces bruxellensis fig fermented fig Plant Fruit fig fermented pickled fruit solid none lactic mesophilic 1 day - 3 months GCA_009932455.1_ASM993245v1_genomic 94 16.36 524 21765767 45.75 100954 GCA_009932455.1 GCA_009932455.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 SternesPR_2017__Y2D1_A_shotgun__bin.5 GCA_009932455.1_ASM993245v1_genomic Ascomycota;Saccharomycetes;Saccharomycetales;Metschnikowiaceae;Metschnikowia Metschnikowia pulcherrima fu-tsai futsai_a_traditional_fermented_mustard_product Plant Vegetables_Aromatics mustard plant pickled vegetables solid none lactic mesophilic 1 week GCF_006007945.1_ASM600794v1_genomic 99.48 0.79 4 2648769 35.76 2558218 GCF_006007945.1 GCF_006007945.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_006007945.1_ASM600794v1_genomic GCF_006007945.1_ASM600794v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus futsaii fu-tsai futsai_a_traditional_fermented_mustard_product Plant Vegetables_Aromatics mustard plant pickled vegetables solid none lactic mesophilic 1 week LeechJ_xxxx__AF04__bin.6 96.22040073 0.364298725 194 1509275 53.4 10942 SAMN39472424 SRR27593218 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF53__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum fufu fufu Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF04__bin.3 86.80785124 0.699760766 401 1791609 37.21 5681 SAMN39472424 SRR27593218 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 LeechJ_xxxx__AF04__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus fufu fufu Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF04__bin.7 71.54220779 1.753246753 144 1045318 51.08 10945 SAMN39472424 SRR27593218 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic LeechJ_xxxx__AF53__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii fufu fufu Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF04__bin.1 92.09592974 2.137870855 260 1440569 40.34 7305 SAMN39472424 SRR27593218 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF68__bin.13 LeechJ_xxxx__AF68__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;NA NA fufu fufu Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF04__bin.4 50.52076366 1.232718894 717 1721449 30.88 2333 SAMN39472424 SRR27593218 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF53__bin.10 LeechJ_xxxx__AF04__bin.4 Bacillota;Clostridia;Clostridiales;Clostridiaceae;Clostridium Clostridium saccharobutylicum fufu fufu Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF51__bin.7 91.90619483 2.487562189 378 2516064 60.62 9767 SAMN39472470 SRR27593197 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF31__bin.3 LeechJ_xxxx__AF51__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter peroxydans fufu fufu Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF51__bin.5 76.39964359 0.573101141 323 1321804 50.95 4579 SAMN39472470 SRR27593197 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic LeechJ_xxxx__AF51__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii fufu fufu Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF51__bin.13 61.20689655 0 113 976112 35.91 16099 SAMN39472470 SRR27593197 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 LeechJ_xxxx__AF51__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus fufu fufu Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF51__bin.15 98.36956522 2.173913043 157 1785325 48.92 15976 SAMN39472470 SRR27593197 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__P-22__bin.8 GCF_001435935.1_ASM143593v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus panis fufu fufu Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF51__bin.18 94.86816214 4.910490512 322 2228592 37.63 9514 SAMN39472470 SRR27593197 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602156__bin.13 LeechJ_xxxx__AF51__bin.18 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus amylovorus fufu fufu Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF51__bin.9 54.17836283 2.487562189 427 1070147 55.09 2482 SAMN39472470 SRR27593197 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF51__bin.9 LeechJ_xxxx__AF51__bin.9 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter oryzoeni fufu fufu Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF71__bin.5 90.46613678 1.202185792 220 1358361 53.48 9222 SAMN39472490 SRR27593171 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF53__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum fufu fufu Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF71__bin.6 81.78234104 1.357733176 268 1265987 51.46 6469 SAMN39472490 SRR27593171 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic LeechJ_xxxx__AF53__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii fufu fufu Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF89__bin.4 79.70328283 0.789141414 453 1723067 35.34 4189 SAMN39472507 SRR27593152 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 LeechJ_xxxx__AF89__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis fufu fufu Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF89__bin.1 99.47643979 0.523560209 74 2294031 36.64 65207 SAMN39472507 SRR27593152 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii fufu fufu Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF89__bin.8 86.46512721 1.275045537 181 1356934 53.65 8780 SAMN39472507 SRR27593152 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF89__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum fufu fufu Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF89__bin.5 91.88311688 0 44 1610172 50.71 77374 SAMN39472507 SRR27593152 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic LeechJ_xxxx__AF53__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii fufu fufu Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF89__bin.7 89.13303923 3.907431028 666 4012379 56.1 7428 SAMN39472507 SRR27593152 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF89__bin.7 LeechJ_xxxx__AF89__bin.7 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter Enterobacter vonholyi fufu fufu Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF49__bin.1 97.4726776 1.74863388 262 1631924 53.54 7859 SAMN39472468 SRR27593199 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF49__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum fura fura Plant Grain millet starch-based staple solid low lactic mesophilic 1-3 days LeechJ_xxxx__AF49__bin.3 93.77572016 0.329218107 254 1424263 37.16 7821 SAMN39472468 SRR27593199 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KharnaiorP_2023__SRR22859379__bin.8 LeechJ_xxxx__AF49__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus fura fura Plant Grain millet starch-based staple solid low lactic mesophilic 1-3 days LeechJ_xxxx__AF49__bin.2 91.56441718 1.226993865 133 1741182 45.04 19362 SAMN39472468 SRR27593199 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_004771075.1_ASM477107v1_genomic LeechJ_xxxx__AF49__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella confusa fura fura Plant Grain millet starch-based staple solid low lactic mesophilic 1-3 days LeechJ_xxxx__AF49__bin.4 93.11997288 1.303155007 239 1599208 42.94 8934 SAMN39472468 SRR27593199 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF49__bin.4 LeechJ_xxxx__AF49__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici A fura fura Plant Grain millet starch-based staple solid low lactic mesophilic 1-3 days EBC_082.15 92.69 4.54 82 4704439 56.28 103369 SAMN40633076 SRS20892311 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_082.15 EBC_082.15 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Kosakonia Kosakonia cowanii furu furu_2 Plant Legumes soybean soybean paste semi-solid low lactic mesophilic 1-3 months EBC_082.8 95.03 1.19 151 3177662 38.48 31121 SAMN40633076 SRS20892311 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 MASTER_WP4_UNINA_1__PM002_71775__bin.13 EBC_082.8 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter junii furu furu_2 Plant Legumes soybean soybean paste semi-solid low lactic mesophilic 1-3 months LeechJ_xxxx__AF03__bin.2 66.66666667 0 136 1155897 44.85 12288 SAMN39472423 SRR27593229 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_004771075.1_ASM477107v1_genomic LeechJ_xxxx__AF03__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella confusa gari gari Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF03__bin.9 90.33000159 2.897033159 224 1384097 37.89 8440 SAMN39472423 SRR27593229 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF84__bin.19 LeechJ_xxxx__AF84__bin.19 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc_B Leuconostoc B fallax gari gari Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF03__bin.7 70.19886364 2.5 95 916068 46.28 14906 SAMN39472423 SRR27593229 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 LeechJ_xxxx__AF54__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis gari gari Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF44__bin.13 87.84153005 1.821493625 216 1501957 53.44 9914 SAMN39472463 SRR27593204 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF44__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum gari gari Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF44__bin.9 99.38271605 0.843621399 261 2084454 37.1 14106 SAMN39472463 SRR27593204 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KharnaiorP_2023__SRR22859379__bin.8 KharnaiorP_2023__SRR22859379__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus gari gari Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF44__bin.8 70.75055188 2.98013245 226 1578151 39.64 11135 SAMN39472463 SRR27593204 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001885995.1_ASM188599v1_genomic LeechJ_xxxx__AF44__bin.8 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_G Enterococcus G italicus gari gari Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF44__bin.2 90.47749154 4.184881603 534 2234276 38.34 5017 SAMN39472463 SRR27593204 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. C-R03.bin.7 LeechJ_xxxx__AF44__bin.2 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Bavariicoccus Bavariicoccus seileri gari gari Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF44__bin.3 64.61649818 1.937172775 260 882955 37.89 3511 SAMN39472463 SRR27593204 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF84__bin.19 LeechJ_xxxx__AF44__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc_B Leuconostoc B fallax gari gari Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF54__bin.5 60.62720766 2.116564417 369 1144790 44.97 3246 SAMN39472473 SRR27593193 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_004771075.1_ASM477107v1_genomic LeechJ_xxxx__AF54__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella confusa gari gari Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF54__bin.10 95.09987516 1.785714286 248 1760293 37.55 9311 SAMN39472473 SRR27593193 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 WalshAM_2017__ERS1739834__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius gari gari Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF54__bin.3 94.2325856 0.334513971 169 1521496 50.84 13000 SAMN39472473 SRR27593193 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic LeechJ_xxxx__AF14__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii gari gari Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF54__bin.1 98.24016563 0.432312253 483 6007036 60.2 18453 SAMN39472473 SRR27593193 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF54__bin.1 LeechJ_xxxx__AF54__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E paracarnis gari gari Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF54__bin.8 57.8125 0 9 848420 45.57 256415 SAMN39472473 SRR27593193 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 LeechJ_xxxx__AF54__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis gari gari Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF69__bin.8 50.96509783 0.318761384 167 688410 52.8 4806 SAMN39472488 SRR27593173 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF69__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum gari gari Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF69__bin.10 67.99432759 4.621676892 403 1279372 45.09 3477 SAMN39472488 SRR27593173 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967691__bin.13 LeechJ_xxxx__AF69__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella cibaria gari gari Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF69__bin.4 83.41696183 0.211038961 136 1374320 51.06 17167 SAMN39472488 SRR27593173 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic LeechJ_xxxx__AF53__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii gari gari Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF69__bin.6 60.34482759 0 53 927099 35.98 44836 SAMN39472488 SRR27593173 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 LeechJ_xxxx__AF82__bin.16 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus gari gari Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF84__bin.27 87.20114284 3.057181345 448 2390169 46.8 6961 SAMN39472503 SRR27593156 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 LeechJ_xxxx__AF84__bin.27 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei gari gari Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF84__bin.8 96.46596859 1.326352531 400 2823948 53.67 9755 SAMN39472503 SRR27593156 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic LeechJ_xxxx__AF84__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis gari gari Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF84__bin.17 75.60961279 0.068306011 155 984868 53.15 9236 SAMN39472503 SRR27593156 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF84__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum gari gari Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF84__bin.31 90.13144692 0.82781457 249 1818814 40.09 11415 SAMN39472503 SRR27593156 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001885995.1_ASM188599v1_genomic LeechJ_xxxx__AF84__bin.31 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_G Enterococcus G italicus gari gari Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF84__bin.19 94.58987784 3.403141361 221 1505928 37.98 9588 SAMN39472503 SRR27593156 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF84__bin.19 LeechJ_xxxx__AF84__bin.19 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc_B Leuconostoc B fallax gari gari Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF84__bin.32 65.86206897 3.448275862 255 1951769 35.38 14376 SAMN39472503 SRR27593156 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF82__bin.13 LeechJ_xxxx__AF84__bin.32 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus NA gari gari Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF84__bin.10 95.57584944 0.586206897 583 4009425 68.9 9406 SAMN39472503 SRR27593156 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF84__bin.10 LeechJ_xxxx__AF84__bin.10 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Xanthomonadaceae;Xanthomonas_A Xanthomonas A translucens gari gari Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF84__bin.18 84.28442029 1.60326087 293 1436387 35.49 6104 SAMN39472503 SRR27593156 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_025211165.1_ASM2521116v1_genomic GCF_025211165.1_ASM2521116v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Periweissella Periweissella beninensis gari gari Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF84__bin.30 98.68519585 0.664457071 90 4466613 52.87 82890 SAMN39472503 SRR27593156 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF84__bin.30 LeechJ_xxxx__AF84__bin.30 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Lelliottia Lelliottia amnigena gari gari Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF84__bin.3 51.75377937 1.152597403 150 849520 38.73 8520 SAMN39472503 SRR27593156 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602156__bin.13 LeechJ_xxxx__AF84__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus amylovorus gari gari Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967732__bin.5 63.8 0.3 2344 8461585 38.22 4111 ERS3967732 ERR4757847 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MASTER_WP4_CSIC_2__P2597__bin.1 LeechJ_2020__ERS3967732__bin.5 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia kudriavzevii garlic fermented garlic Plant Vegetables_Aromatics garlic pickled vegetables solid none lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967734__bin.5 94.17001843 0.641025641 575 3538855 64.83 8353 ERS3967734 ERR4757849 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967740__bin.7 LeechJ_2020__ERS3967740__bin.7 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Aquaspirillaceae;Microvirgula Microvirgula aerodenitrificans ginger fermented ginger Plant Vegetables_Aromatics ginger pickled vegetables solid none lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967734__bin.7 51.96944674 1.647398844 404 1180219 69.74 3092 ERS3967734 ERR4757849 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967734__bin.7 LeechJ_2020__ERS3967734__bin.7 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;JAKVJE01 NA ginger fermented ginger Plant Vegetables_Aromatics ginger pickled vegetables solid none lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967734__bin.8 91.66666667 0.986842105 464 2768544 68.19 7541 ERS3967734 ERR4757849 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967734__bin.8 LeechJ_2020__ERS3967734__bin.8 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Acidipropionibacterium Acidipropionibacterium thoenii ginger fermented ginger Plant Vegetables_Aromatics ginger pickled vegetables solid none lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967697__bin.3 99.29453263 0 111 1899503 37.59 34834 ERS3967697 ERR4757812 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. GCF_009913915.1_ASM991391v1_genomic MortensenS_xxxx__WK054-2-L-08h-04E9_S16__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides beer ginger ginger_beer Plant Vegetables_Aromatics ginger beverage liquid medium lactic mesophilic 1-14 days LeechJ_2020__ERS3967697__bin.7 83.82009795 0.497512438 460 2822610 60.68 7965 ERS3967697 ERR4757812 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967697__bin.7 LeechJ_2020__ERS3967697__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter sp018811945 beer ginger ginger_beer Plant Vegetables_Aromatics ginger beverage liquid medium lactic mesophilic 1-14 days LeechJ_2020__ERS3967697__bin.1 82.29885057 4.310344828 101 3159999 60.08 58722 ERS3967697 ERR4757812 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.5 LeechJ_2020__ERS3967690__bin.8 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter albidus beer ginger ginger_beer Plant Vegetables_Aromatics ginger beverage liquid medium lactic mesophilic 1-14 days EBC_024.4 93.58 0.21 344 10148440 39.8 138736 SAMN40633058 SRS20892286 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_024.4 EBC_024.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces marxianus kefir goat_kefir_60_h Animal Dairy milk goat beverage liquid low lactic mesophilic 1-2 days GCF_009913915.1_ASM991391v1_genomic 100 0 3 2058732 37.69 1988249 GCF_009913915.1 GCF_009913915.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides gochujang gochujang Plant Legumes soybean soybean paste semi-solid low lactic mesophilic 1-3 months YasirM_2022__SRR18334998__bin.3 94.14 2.7 351 1929921 36.25 8017 SAMN26688208 SRR18334998 Greece PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. YasirM_2022__SRR18334997__bin.9 YasirM_2022__SRR18334997__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus acetotolerans pickle greek greek_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18334998__bin.4 96.16 4.24 171 2463639 52.15 20597 SAMN26688208 SRR18334998 Greece PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. YasirM_2022__SRR18335012__bin.3 YasirM_2022__SRR18335012__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus namurensis A pickle greek greek_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18334998__bin.9 79.36 1.6 158 1505071 49.43 13950 SAMN26688208 SRR18334998 Greece PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. MASTER_WP4_UNINA_2__P-22__bin.8 GCF_001435935.1_ASM143593v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus panis pickle greek greek_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18334999__bin.1 54.55 1.12 554 1574539 49.31 2989 SAMN26688207 SRR18334999 Greece PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. YasirM_2022__SRR18334999__bin.1 YasirM_2022__SRR18334999__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Idiomarina Idiomarina sp002729675 pickle greek greek_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335000__bin.1 90.85 2.73 300 2134400 52.96 8931 SAMN26688206 SRR18335000 Greece PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. YasirM_2022__SRR18335012__bin.3 YasirM_2022__SRR18335012__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus namurensis A pickle greek greek_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335000__bin.4 95.18 4.8 216 1991633 37.39 16016 SAMN26688206 SRR18335000 Greece PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. YasirM_2022__SRR18335001__bin.1 YasirM_2022__SRR18335001__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus ethanolidurans pickle greek greek_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months KharnaiorP_2023__SRR22859380__bin.13 89.98 2.88 46 2706326 32.8 206303 SAMN32359436 SRR22859380 India PRJNA914873 SRP414396 NCBI Kharnaior P, Tamang JP. Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics. Int J Food Microbiol. 2023 Dec 16;407:110417. doi: 10.1016/j.ijfoodmicro.2023.110417. ODFM-BA-A-0167-001_Staphylococcus_succinus_BC15 KharnaiorP_2023__SRR22859380__bin.13 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus succinus grep-chhurpi grepchhurpi Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-7 days KharnaiorP_2023__SRR22859380__bin.2 99.73 0.16 66 2700106 37.55 68924 SAMN32359436 SRR22859380 India PRJNA914873 SRP414396 NCBI Kharnaior P, Tamang JP. Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics. Int J Food Microbiol. 2023 Dec 16;407:110417. doi: 10.1016/j.ijfoodmicro.2023.110417. MASTER_WP4_CSIC_1__P2235_73323__bin.9 KharnaiorP_2023__SRR22859380__bin.2 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis grep-chhurpi grepchhurpi Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-7 days KharnaiorP_2023__SRR22859380__bin.5 93.77 3.8 122 2357880 38.56 35560 SAMN32359436 SRR22859380 India PRJNA914873 SRP414396 NCBI Kharnaior P, Tamang JP. Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics. Int J Food Microbiol. 2023 Dec 16;407:110417. doi: 10.1016/j.ijfoodmicro.2023.110417. ODFM-BA-A-0139-001_Enterococcus_lactis_CICC_24101 MAG_125 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B lactis grep-chhurpi grepchhurpi Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-7 days YasirM_2022__SRR18335001__bin.1 87.12 0.02 150 2020041 37.17 28801 SAMN26688205 SRR18335001 Saudi Arabia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. YasirM_2022__SRR18335001__bin.1 YasirM_2022__SRR18335001__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus ethanolidurans pickle hijazi hijazi_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335001__bin.4 98.16 0.05 79 1718775 53.13 33983 SAMN26688205 SRR18335001 Saudi Arabia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. FontanaF_2023__SRR20746839__bin.4 YasirM_2022__SRR18335001__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum pickle hijazi hijazi_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335001__bin.7 96.03 0.11 46 2538715 52.06 102902 SAMN26688205 SRR18335001 Saudi Arabia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. YasirM_2022__SRR18335012__bin.3 YasirM_2022__SRR18335012__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus namurensis A pickle hijazi hijazi_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335001__bin.8 91.37 1.98 139 2705426 42.82 34533 SAMN26688205 SRR18335001 Saudi Arabia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. GCF_001436255.1_ASM143625v1_genomic GCF_001436255.1_ASM143625v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus rapi pickle hijazi hijazi_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335002__bin.1 89.78 0.11 79 1417916 36.21 33701 SAMN26688204 SRR18335002 Saudi Arabia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. YasirM_2022__SRR18334997__bin.9 YasirM_2022__SRR18334997__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus acetotolerans pickle hijazi hijazi_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335002__bin.2 97.63 3.2 129 2033120 48.08 21967 SAMN26688204 SRR18335002 Saudi Arabia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. MASTER_WP4_UNINA_2__P-22__bin.8 GCF_001435935.1_ASM143593v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus panis pickle hijazi hijazi_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335002__bin.3 92.21 1.39 246 2236090 44.82 12176 SAMN26688204 SRR18335002 Saudi Arabia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. DeFilippisF_xxxx__DF_30__bin.3 LeechJ_2020__ERS3967735__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri pickle hijazi hijazi_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335003__bin.1 89.38 0.11 85 1390042 36.36 32764 SAMN26688203 SRR18335003 Saudi Arabia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. YasirM_2022__SRR18334997__bin.9 YasirM_2022__SRR18334997__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus acetotolerans pickle hijazi hijazi_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335004__bin.1 85.48 1.63 101 1817890 48.29 35012 SAMN26688202 SRR18335004 India PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. MASTER_WP4_UNINA_2__P-22__bin.8 GCF_001435935.1_ASM143593v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus panis pickle indian indan_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335013__bin.1 99.57 1.43 115 1520097 36.24 23302 SAMN26688201 SRR18335013 India PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. YasirM_2022__SRR18334997__bin.9 YasirM_2022__SRR18334997__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus acetotolerans pickle indian indan_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335013__bin.11 89.29 0.99 51 2252173 44.7 66815 SAMN26688201 SRR18335013 India PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. DeFilippisF_xxxx__DF_30__bin.3 LeechJ_2020__ERS3967735__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri pickle indian indan_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335013__bin.13 82.2 0.01 78 1442936 53.35 33869 SAMN26688201 SRR18335013 India PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. FontanaF_2023__SRR20746839__bin.4 YasirM_2022__SRR18335001__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum pickle indian indan_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335013__bin.14 93.05 1.84 296 2359249 52.41 11724 SAMN26688201 SRR18335013 India PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. YasirM_2022__SRR18335012__bin.3 YasirM_2022__SRR18335012__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus namurensis A pickle indian indan_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335013__bin.7 87.29 4.05 777 3044002 46.84 4402 SAMN26688201 SRR18335013 India PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. YasirM_2022__SRR18335011__bin.1 YasirM_2022__SRR18335013__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus pentosus pickle indian indan_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335013__bin.8 93.32 4.65 255 2559551 43.05 15362 SAMN26688201 SRR18335013 India PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. GCF_001436255.1_ASM143625v1_genomic GCF_001436255.1_ASM143625v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus rapi pickle indian indan_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335013__bin.9 92.83 3.33 101 1950824 48.25 35011 SAMN26688201 SRR18335013 India PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. MASTER_WP4_UNINA_2__P-22__bin.8 GCF_001435935.1_ASM143593v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus panis pickle indian indan_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335014__bin.2 99.93 2.93 260 2428097 45.94 14920 SAMN26688200 SRR18335014 India PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. MotaGutierrezJ_2021__SRR11602150__bin.9 YasirM_2022__SRR18335014__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis pickle indian indan_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335014__bin.3 77.29 3.39 338 1414079 53.43 4766 SAMN26688200 SRR18335014 India PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. FontanaF_2023__SRR20746839__bin.4 YasirM_2022__SRR18335001__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum pickle indian indan_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335014__bin.5 85.32 1.48 204 2855796 46.73 22089 SAMN26688200 SRR18335014 India PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. YasirM_2022__SRR18335011__bin.1 YasirM_2022__SRR18335011__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus pentosus pickle indian indan_pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months CM_INJERA__injera_E1__bin.13 58.88193445 0 341 946431 41.85 2891 SAMN18389448 SRR14018897 Ethiopia PRJNA504891 SRP168387 NCBI Manara, S., Selma-Royo, M., Huang, K.D., Asnicar, F., Armanini, F., Blanco-Miguez, A., Cumbo, F., Golzato, D., Manghi, P., Pinto, F., et al. (2023). Maternal and food microbial sources shape the infant microbiome of a rural Ethiopian population. Curr. Biol. 33, 1939–1950.e4. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 CM_INJERA__injera_E1__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus injera injera Plant Grain teff starch-based staple solid low lactic mesophilic 1-3 days CM_INJERA__injera_E1__bin.17 78.10945274 0 43 1782580 61.59 88362 SAMN18389448 SRR14018897 Ethiopia PRJNA504891 SRP168387 NCBI Manara, S., Selma-Royo, M., Huang, K.D., Asnicar, F., Armanini, F., Blanco-Miguez, A., Cumbo, F., Golzato, D., Manghi, P., Pinto, F., et al. (2023). Maternal and food microbial sources shape the infant microbiome of a rural Ethiopian population. Curr. Biol. 33, 1939–1950.e4. LeechJ_2020__ERS3967701__bin.5 CM_INJERA__injera_E1__bin.17 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter oxydans injera injera Plant Grain teff starch-based staple solid low lactic mesophilic 1-3 days CM_INJERA__injera_E1__bin.16 73.6318408 0 88 1923384 58.47 40201 SAMN18389448 SRR14018897 Ethiopia PRJNA504891 SRP168387 NCBI Manara, S., Selma-Royo, M., Huang, K.D., Asnicar, F., Armanini, F., Blanco-Miguez, A., Cumbo, F., Golzato, D., Manghi, P., Pinto, F., et al. (2023). Maternal and food microbial sources shape the infant microbiome of a rural Ethiopian population. Curr. Biol. 33, 1939–1950.e4. CM_INJERA__injera_E2__bin.1 CM_INJERA__injera_E2__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA injera injera Plant Grain teff starch-based staple solid low lactic mesophilic 1-3 days CM_INJERA__injera_E1__bin.8 92.75390625 0.78125 123 1081881 34.45 15641 SAMN18389448 SRR14018897 Ethiopia PRJNA504891 SRP168387 NCBI Manara, S., Selma-Royo, M., Huang, K.D., Asnicar, F., Armanini, F., Blanco-Miguez, A., Cumbo, F., Golzato, D., Manghi, P., Pinto, F., et al. (2023). Maternal and food microbial sources shape the infant microbiome of a rural Ethiopian population. Curr. Biol. 33, 1939–1950.e4. LandisEA_2021__SRS5653399__bin.4 LandisEA_2021__SRS5653399__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Fructilactobacillus Fructilactobacillus sanfranciscensis injera injera Plant Grain teff starch-based staple solid low lactic mesophilic 1-3 days CM_INJERA__injera_E1__bin.22 75.4 1.2 1698 9083686 28.05 7159 SAMN18389448 SRR14018897 Ethiopia PRJNA504891 SRP168387 NCBI Manara, S., Selma-Royo, M., Huang, K.D., Asnicar, F., Armanini, F., Blanco-Miguez, A., Cumbo, F., Golzato, D., Manghi, P., Pinto, F., et al. (2023). Maternal and food microbial sources shape the infant microbiome of a rural Ethiopian population. Curr. Biol. 33, 1939–1950.e4. DuR_2020__DRS139334__bin.19 CM_INJERA__injera_E1__bin.22 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia kluyveri injera injera Plant Grain teff starch-based staple solid low lactic mesophilic 1-3 days CM_INJERA__injera_E1__bin.23 89.6 1.2 776 10353822 38.33 21799 SAMN18389448 SRR14018897 Ethiopia PRJNA504891 SRP168387 NCBI Manara, S., Selma-Royo, M., Huang, K.D., Asnicar, F., Armanini, F., Blanco-Miguez, A., Cumbo, F., Golzato, D., Manghi, P., Pinto, F., et al. (2023). Maternal and food microbial sources shape the infant microbiome of a rural Ethiopian population. Curr. Biol. 33, 1939–1950.e4. MASTER_WP4_CSIC_2__P2597__bin.1 MASTER_WP4_CSIC_2__P2597__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia kudriavzevii injera injera Plant Grain teff starch-based staple solid low lactic mesophilic 1-3 days CM_INJERA__injera_E2__bin.1 99.25373134 0 111 2374835 58.73 38125 SAMN18389449 SRR14018896 Ethiopia PRJNA504891 SRP168387 NCBI Manara, S., Selma-Royo, M., Huang, K.D., Asnicar, F., Armanini, F., Blanco-Miguez, A., Cumbo, F., Golzato, D., Manghi, P., Pinto, F., et al. (2023). Maternal and food microbial sources shape the infant microbiome of a rural Ethiopian population. Curr. Biol. 33, 1939–1950.e4. CM_INJERA__injera_E2__bin.1 CM_INJERA__injera_E2__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA injera injera Plant Grain teff starch-based staple solid low lactic mesophilic 1-3 days CM_INJERA__injera_E2__bin.8 82.8125 0.9375 29 701505 33.66 50606 SAMN18389449 SRR14018896 Ethiopia PRJNA504891 SRP168387 NCBI Manara, S., Selma-Royo, M., Huang, K.D., Asnicar, F., Armanini, F., Blanco-Miguez, A., Cumbo, F., Golzato, D., Manghi, P., Pinto, F., et al. (2023). Maternal and food microbial sources shape the infant microbiome of a rural Ethiopian population. Curr. Biol. 33, 1939–1950.e4. LandisEA_2021__SRS5653399__bin.4 LandisEA_2021__SRS5653399__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Fructilactobacillus Fructilactobacillus sanfranciscensis injera injera Plant Grain teff starch-based staple solid low lactic mesophilic 1-3 days CM_INJERA__injera_E2__bin.23 62.06896552 0 327 1385376 54.98 4840 SAMN18389449 SRR14018896 Ethiopia PRJNA504891 SRP168387 NCBI Manara, S., Selma-Royo, M., Huang, K.D., Asnicar, F., Armanini, F., Blanco-Miguez, A., Cumbo, F., Golzato, D., Manghi, P., Pinto, F., et al. (2023). Maternal and food microbial sources shape the infant microbiome of a rural Ethiopian population. Curr. Biol. 33, 1939–1950.e4. G_514_1B_orientalis_assembly CM_INJERA__injera_E2__bin.23 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis injera injera Plant Grain teff starch-based staple solid low lactic mesophilic 1-3 days LeechJ_xxxx__AF06__bin.3 88.93624384 2.291405858 572 3249072 44.04 7002 SAMN39472426 SRR27593196 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602153__bin.4 LeechJ_xxxx__AF83__bin.8 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus subtilis iru iru Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days LeechJ_xxxx__AF06__bin.5 54.07523511 1.724137931 192 1324488 37.08 9080 SAMN39472426 SRR27593196 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF24__bin.1 LeechJ_xxxx__AF24__bin.1 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus simulans iru iru Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days LeechJ_xxxx__AF06__bin.6 77.89968652 0 206 1095793 34.71 6754 SAMN39472426 SRR27593196 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF83__bin.9 LeechJ_xxxx__AF06__bin.6 Bacillota;Bacilli;Staphylococcales;Salinicoccaceae;Nosocomiicoccus Nosocomiicoccus stercorigallinarum iru iru Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days LeechJ_xxxx__AF06__bin.4 93.76284875 2.294944409 291 2317464 61.18 10247 SAMN39472426 SRR27593196 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF06__bin.4 LeechJ_xxxx__AF06__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium faecipullorum iru iru Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days LeechJ_xxxx__AF06__bin.8 82.33695652 3.537200294 60 1204725 35.98 33016 SAMN39472426 SRR27593196 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF06__bin.8 LeechJ_xxxx__AF06__bin.8 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Alloiococcus Alloiococcus sp035301245 iru iru Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days LeechJ_xxxx__AF10__bin.11 81.03448276 0 126 3507312 44.01 44335 SAMN39472430 SRR27593180 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602153__bin.4 LeechJ_xxxx__AF83__bin.8 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus subtilis iru iru Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days LeechJ_xxxx__AF10__bin.14 62.06896552 0 70 1010445 34.93 21436 SAMN39472430 SRR27593180 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF83__bin.9 LeechJ_xxxx__AF10__bin.14 Bacillota;Bacilli;Staphylococcales;Salinicoccaceae;Nosocomiicoccus Nosocomiicoccus stercorigallinarum iru iru Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days LeechJ_xxxx__AF10__bin.10 70.03311258 0.331125828 310 1568407 32.4 6603 SAMN39472430 SRR27593180 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF10__bin.10 LeechJ_xxxx__AF10__bin.10 Bacillota;Bacilli;Bacillales_D;Amphibacillaceae;Pseudogracilibacillus NA iru iru Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days LeechJ_xxxx__AF10__bin.16 55.17241379 0 87 1481479 33.98 35910 SAMN39472430 SRR27593180 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF10__bin.16 LeechJ_xxxx__AF10__bin.16 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes NA iru iru Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days LeechJ_xxxx__AF48__bin.5 89.25870729 2.245304943 556 2678465 37.49 6262 SAMN39472467 SRR27593200 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_608 LeechJ_xxxx__AF48__bin.5 Bacillota;Bacilli;Bacillales_B;Caldibacillaceae;Caldifermentibacillus Caldifermentibacillus hisashii iru iru Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days LeechJ_xxxx__AF48__bin.8 93.59481004 3.349343713 517 3390581 44.22 8880 SAMN39472467 SRR27593200 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602153__bin.4 LeechJ_xxxx__AF48__bin.8 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus subtilis iru iru Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days LeechJ_xxxx__AF48__bin.7 92.05298013 2.649006623 532 3600116 35.86 10146 SAMN39472467 SRR27593200 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF80__bin.2 LeechJ_xxxx__AF80__bin.2 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Ureibacillus Ureibacillus thermosphaericus iru iru Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days LeechJ_xxxx__AF52__bin.5 91.11956805 2.224790995 800 3423137 37.38 5343 SAMN39472471 SRR27593195 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_608 LeechJ_xxxx__AF52__bin.5 Bacillota;Bacilli;Bacillales_B;Caldibacillaceae;Caldifermentibacillus Caldifermentibacillus hisashii iru iru Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days LeechJ_xxxx__AF52__bin.3 54.8706733 0.646899007 716 2013729 44.39 2883 SAMN39472471 SRR27593195 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602153__bin.4 LeechJ_xxxx__AF52__bin.3 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus subtilis iru iru Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days LeechJ_xxxx__AF52__bin.4 98.89502762 1.104972376 83 2510352 35.85 48485 SAMN39472471 SRR27593195 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF24__bin.1 LeechJ_xxxx__AF52__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus simulans iru iru Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days LeechJ_xxxx__AF52__bin.1 94.53642384 3.752759382 629 4235614 37.91 9232 SAMN39472471 SRR27593195 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF52__bin.1 LeechJ_xxxx__AF52__bin.1 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Lysinibacillus Lysinibacillus boronitolerans iru iru Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days LeechJ_xxxx__AF56__bin.9 53.49600272 1.583765354 632 1612599 37.98 2646 SAMN39472475 SRR27593191 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_608 LeechJ_xxxx__AF56__bin.9 Bacillota;Bacilli;Bacillales_B;Caldibacillaceae;Caldifermentibacillus Caldifermentibacillus hisashii iru iru Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days LeechJ_xxxx__AF56__bin.2 79.31034483 0 234 3479140 43.97 23274 SAMN39472475 SRR27593191 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602153__bin.4 LeechJ_xxxx__AF83__bin.8 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus subtilis iru iru Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days LeechJ_xxxx__AF56__bin.13 82.13209442 2.44014733 377 1379883 38.1 4052 SAMN39472475 SRR27593191 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF57__bin.8 LeechJ_xxxx__AF56__bin.13 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus_A Vagococcus A lutrae iru iru Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days LeechJ_xxxx__AF56__bin.15 67.24137931 0 236 1592343 41.8 9481 SAMN39472475 SRR27593191 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KumarJ_2019__SRS4562503__bin.9 LeechJ_xxxx__AF56__bin.15 Bacillota;Bacilli;Staphylococcales;Salinicoccaceae;Jeotgalicoccus Jeotgalicoccus nanhaiensis iru iru Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days LeechJ_xxxx__AF56__bin.5 88.2781457 1.048565121 230 1899629 40.92 11767 SAMN39472475 SRR27593191 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF56__bin.5 LeechJ_xxxx__AF56__bin.5 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Savagea Savagea serpentis iru iru Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days LeechJ_xxxx__AF83__bin.3 59.41029047 0.570734669 624 1807524 38.51 2995 SAMN39472502 SRR27593157 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_608 LeechJ_xxxx__AF83__bin.3 Bacillota;Bacilli;Bacillales_B;Caldibacillaceae;Caldifermentibacillus Caldifermentibacillus hisashii iru iru Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days LeechJ_xxxx__AF83__bin.8 96.44184811 0.82893414 159 3542449 43.97 39779 SAMN39472502 SRR27593157 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602153__bin.4 LeechJ_xxxx__AF83__bin.8 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus subtilis iru iru Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days LeechJ_xxxx__AF83__bin.9 86.74033149 0.552486188 69 1275703 34.99 26863 SAMN39472502 SRR27593157 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF83__bin.9 LeechJ_xxxx__AF83__bin.9 Bacillota;Bacilli;Staphylococcales;Salinicoccaceae;Nosocomiicoccus Nosocomiicoccus stercorigallinarum iru iru Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days LeechJ_xxxx__AF83__bin.7 84.51523793 0.552486188 346 1829092 39.95 6455 SAMN39472502 SRR27593157 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF83__bin.7 LeechJ_xxxx__AF83__bin.7 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus pettenkoferi iru iru Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days GCF_011516835.1_ASM1151683v1_genomic 99.65 0.5 138 4713408 59.47 141422 GCF_011516835.1 GCF_011516835.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_011516835.1_ASM1151683v1_genomic GCF_011516835.1_ASM1151683v1_genomic Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter musti cider grape isolated_organism Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months ShangpliangH_2023_b__SRR22851057__bin.11 100 0.1 20 2561095 53.94 187481 SAMN32351984 SRR22851057 India PRJNA914730 SRP414320 NCBI Shangpliang HNJ, Tamang JP. Metagenome-assembled genomes for biomarkers of bio-functionalities in Laal dahi, an Indian ethnic fermented milk product. Int J Food Microbiol. 2023 Oct 2;402:110300. doi: 10.1016/j.ijfoodmicro.2023.110300. SRR10454491C1008_acetobacter_assembly ShangpliangH_2023_b__SRR22851057__bin.11 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA jalebi jalebi Plant Grain wheat starch-based staple solid low lactic mesophilic 1 day ShangpliangH_2023_b__SRR22851057__bin.13 52.09 2.19 160 1419934 45.37 12081 SAMN32351984 SRR22851057 India PRJNA914730 SRP414320 NCBI Shangpliang HNJ, Tamang JP. Metagenome-assembled genomes for biomarkers of bio-functionalities in Laal dahi, an Indian ethnic fermented milk product. Int J Food Microbiol. 2023 Oct 2;402:110300. doi: 10.1016/j.ijfoodmicro.2023.110300. FalardeauJ_2023__SRR20811279__bin.3 ShangpliangH_2023_b__SRR22851057__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum jalebi jalebi Plant Grain wheat starch-based staple solid low lactic mesophilic 1 day ShangpliangH_2023_b__SRR22851057__bin.14 52.27 1.13 64 1102906 35.22 26104 SAMN32351984 SRR22851057 India PRJNA914730 SRP414320 NCBI Shangpliang HNJ, Tamang JP. Metagenome-assembled genomes for biomarkers of bio-functionalities in Laal dahi, an Indian ethnic fermented milk product. Int J Food Microbiol. 2023 Oct 2;402:110300. doi: 10.1016/j.ijfoodmicro.2023.110300. MAG_501 ShangpliangH_2023_b__SRR22851058__bin.8 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis jalebi jalebi Plant Grain wheat starch-based staple solid low lactic mesophilic 1 day ShangpliangH_2023_b__SRR22851057__bin.2 83.4 2.72 248 1580251 38.09 7972 SAMN32351984 SRR22851057 India PRJNA914730 SRP414320 NCBI Shangpliang HNJ, Tamang JP. Metagenome-assembled genomes for biomarkers of bio-functionalities in Laal dahi, an Indian ethnic fermented milk product. Int J Food Microbiol. 2023 Oct 2;402:110300. doi: 10.1016/j.ijfoodmicro.2023.110300. ShangpliangH_2023_b__SRR22851057__bin.2 ShangpliangH_2023_b__SRR22851057__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus stilesii jalebi jalebi Plant Grain wheat starch-based staple solid low lactic mesophilic 1 day ShangpliangH_2023_b__SRR22851057__bin.4 83.93 0.29 37 1601920 38.34 64552 SAMN32351984 SRR22851057 India PRJNA914730 SRP414320 NCBI Shangpliang HNJ, Tamang JP. Metagenome-assembled genomes for biomarkers of bio-functionalities in Laal dahi, an Indian ethnic fermented milk product. Int J Food Microbiol. 2023 Oct 2;402:110300. doi: 10.1016/j.ijfoodmicro.2023.110300. CM_UNINA_FFOOD__FFOOD_418__bin.8 CM_UNINA_FFOOD__FFOOD_418__bin.8 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus petauri jalebi jalebi Plant Grain wheat starch-based staple solid low lactic mesophilic 1 day ShangpliangH_2023_b__SRR22851057__bin.6 82.92 2.74 206 1263704 38.18 7151 SAMN32351984 SRR22851057 India PRJNA914730 SRP414320 NCBI Shangpliang HNJ, Tamang JP. Metagenome-assembled genomes for biomarkers of bio-functionalities in Laal dahi, an Indian ethnic fermented milk product. Int J Food Microbiol. 2023 Oct 2;402:110300. doi: 10.1016/j.ijfoodmicro.2023.110300. ShangpliangH_2023_b__SRR22851058__bin.16 ShangpliangH_2023_b__SRR22851057__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lapidilactobacillus Lapidilactobacillus dextrinicus jalebi jalebi Plant Grain wheat starch-based staple solid low lactic mesophilic 1 day ShangpliangH_2023_b__SRR22851058__bin.16 79.53 1.36 235 1350976 38.24 6667 SAMN32351983 SRR22851058 India PRJNA914730 SRP414320 NCBI Shangpliang HNJ, Tamang JP. Metagenome-assembled genomes for biomarkers of bio-functionalities in Laal dahi, an Indian ethnic fermented milk product. Int J Food Microbiol. 2023 Oct 2;402:110300. doi: 10.1016/j.ijfoodmicro.2023.110300. ShangpliangH_2023_b__SRR22851058__bin.16 ShangpliangH_2023_b__SRR22851058__bin.16 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lapidilactobacillus Lapidilactobacillus dextrinicus jalebi jalebi Plant Grain wheat starch-based staple solid low lactic mesophilic 1 day ShangpliangH_2023_b__SRR22851058__bin.26 93.41 1.22 73 1807075 38.3 40856 SAMN32351983 SRR22851058 India PRJNA914730 SRP414320 NCBI Shangpliang HNJ, Tamang JP. Metagenome-assembled genomes for biomarkers of bio-functionalities in Laal dahi, an Indian ethnic fermented milk product. Int J Food Microbiol. 2023 Oct 2;402:110300. doi: 10.1016/j.ijfoodmicro.2023.110300. CM_UNINA_FFOOD__FFOOD_418__bin.8 CM_UNINA_FFOOD__FFOOD_418__bin.8 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus petauri jalebi jalebi Plant Grain wheat starch-based staple solid low lactic mesophilic 1 day ShangpliangH_2023_b__SRR22851058__bin.4 67.56 2.74 244 1932310 56.49 9969 SAMN32351983 SRR22851058 India PRJNA914730 SRP414320 NCBI Shangpliang HNJ, Tamang JP. Metagenome-assembled genomes for biomarkers of bio-functionalities in Laal dahi, an Indian ethnic fermented milk product. Int J Food Microbiol. 2023 Oct 2;402:110300. doi: 10.1016/j.ijfoodmicro.2023.110300. GCF_015244665.1_ASM1524466v1_genomic ShangpliangH_2023_b__SRR22851058__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter_A Gluconobacter A japonicus jalebi jalebi Plant Grain wheat starch-based staple solid low lactic mesophilic 1 day ShangpliangH_2023_b__SRR22851058__bin.8 54.65 0.59 48 1135525 35.37 36032 SAMN32351983 SRR22851058 India PRJNA914730 SRP414320 NCBI Shangpliang HNJ, Tamang JP. Metagenome-assembled genomes for biomarkers of bio-functionalities in Laal dahi, an Indian ethnic fermented milk product. Int J Food Microbiol. 2023 Oct 2;402:110300. doi: 10.1016/j.ijfoodmicro.2023.110300. MAG_501 ShangpliangH_2023_b__SRR22851058__bin.8 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis jalebi jalebi Plant Grain wheat starch-based staple solid low lactic mesophilic 1 day GCF_004136575.1_ASM413657v1_genomic 99.67 0 44 2911929 64.51 118248 GCF_004136575.1 GCF_004136575.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_004136575.1_ASM413657v1_genomic GCF_004136575.1_ASM413657v1_genomic Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia koreensis jeotgal jeotgal Animal Seafood seafood seafood solid none lactic mesophilic 2-4 months LeechJ_xxxx__AF25__bin.2 93.85245902 2.845669813 235 1490675 53.47 8208 SAMN39472444 SRR27593225 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF25__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum kantong kantong Plant Legumes kapok seeds other bean paste semi-solid none lactic mesophilic 1-2 weeks LeechJ_xxxx__AF25__bin.19 66.37931034 0 306 1287483 42.69 5076 SAMN39472444 SRR27593225 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 LeechJ_xxxx__AF25__bin.19 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici kantong kantong Plant Legumes kapok seeds other bean paste semi-solid none lactic mesophilic 1-2 weeks LeechJ_xxxx__AF25__bin.13 63.79310345 4.310344828 300 1116739 43.24 4139 SAMN39472444 SRR27593225 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF49__bin.4 LeechJ_xxxx__AF25__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici A kantong kantong Plant Legumes kapok seeds other bean paste semi-solid none lactic mesophilic 1-2 weeks LeechJ_xxxx__AF25__bin.6 94.927695 4.158898361 399 2025777 38.16 6893 SAMN39472444 SRR27593225 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YulandiA_2020__SRS6115052__bin.21 LeechJ_xxxx__AF25__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella paramesenteroides kantong kantong Plant Legumes kapok seeds other bean paste semi-solid none lactic mesophilic 1-2 weeks LeechJ_xxxx__AF25__bin.1 54.20413342 1.114135245 632 1805402 44.05 2938 SAMN39472444 SRR27593225 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602153__bin.4 LeechJ_xxxx__AF25__bin.1 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus subtilis kantong kantong Plant Legumes kapok seeds other bean paste semi-solid none lactic mesophilic 1-2 weeks LeechJ_xxxx__AF25__bin.5 97.8125 0.3125 7 1293562 33.14 257518 SAMN39472444 SRR27593225 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF25__bin.5 LeechJ_xxxx__AF25__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus laojiaonis kantong kantong Plant Legumes kapok seeds other bean paste semi-solid none lactic mesophilic 1-2 weeks LeechJ_xxxx__AF25__bin.11 75.4 0.9 909 9623120 44.85 15122 SAMN39472444 SRR27593225 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-22__bin.15 LeechJ_xxxx__AF25__bin.11 Ascomycota;Saccharomycetes;Saccharomycetales;Trichomonascaceae;Wickerhamiella Wickerhamiella versatilis kantong kantong Plant Legumes kapok seeds other bean paste semi-solid none lactic mesophilic 1-2 weeks LeechJ_xxxx__AF25__bin.17 95.9 0 934 9161297 37.56 14813 SAMN39472444 SRR27593225 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF25__bin.17 LeechJ_xxxx__AF25__bin.17 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;unknown unknown kantong kantong Plant Legumes kapok seeds other bean paste semi-solid none lactic mesophilic 1-2 weeks TomarS_2023__SRR15925267__bin.12 100 0.48 184 2807920 45.01 20657 SAMN21449276 SRR15925267 India PRJNA763767 SRP337504 NCBI Tomar S, Mitra D, Kumar G, Kashyap P, Sharma M, Kumar S, Sridhar K, Pant K. Microbial Diversity and Functional Potential of Keem: A Traditional Starter Culture for Alcoholic Beverage-Application of Next-Generation Amplicon and Shotgun Metagenome Sequences. Mol Biotechnol. 2023 Aug 11. doi: 10.1007/s12033-023-00839-3. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum keem keem Plant Grain barley starter culture solid low mixed none 3-7 days TomarS_2023__SRR15925267__bin.13 99.13 2.79 436 8163378 72.49 31364 SAMN21449276 SRR15925267 India PRJNA763767 SRP337504 NCBI Tomar S, Mitra D, Kumar G, Kashyap P, Sharma M, Kumar S, Sridhar K, Pant K. Microbial Diversity and Functional Potential of Keem: A Traditional Starter Culture for Alcoholic Beverage-Application of Next-Generation Amplicon and Shotgun Metagenome Sequences. Mol Biotechnol. 2023 Aug 11. doi: 10.1007/s12033-023-00839-3. TomarS_2023__SRR15925267__bin.13 TomarS_2023__SRR15925267__bin.13 Actinomycetota;Actinomycetes;Streptomycetales;Streptomycetaceae;Streptomyces Streptomyces albus keem keem Plant Grain barley starter culture solid low mixed none 3-7 days TomarS_2023__SRR15925267__bin.15 99.98 0.04 66 3924535 46.4 113974 SAMN21449276 SRR15925267 India PRJNA763767 SRP337504 NCBI Tomar S, Mitra D, Kumar G, Kashyap P, Sharma M, Kumar S, Sridhar K, Pant K. Microbial Diversity and Functional Potential of Keem: A Traditional Starter Culture for Alcoholic Beverage-Application of Next-Generation Amplicon and Shotgun Metagenome Sequences. Mol Biotechnol. 2023 Aug 11. doi: 10.1007/s12033-023-00839-3. TomarS_2023__SRR15925267__bin.15 TomarS_2023__SRR15925267__bin.15 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus licheniformis keem keem Plant Grain barley starter culture solid low mixed none 3-7 days TomarS_2023__SRR15925267__bin.16 99.53 3.72 536 6545017 72.2 19850 SAMN21449276 SRR15925267 India PRJNA763767 SRP337504 NCBI Tomar S, Mitra D, Kumar G, Kashyap P, Sharma M, Kumar S, Sridhar K, Pant K. Microbial Diversity and Functional Potential of Keem: A Traditional Starter Culture for Alcoholic Beverage-Application of Next-Generation Amplicon and Shotgun Metagenome Sequences. Mol Biotechnol. 2023 Aug 11. doi: 10.1007/s12033-023-00839-3. TomarS_2023__SRR15925267__bin.16 TomarS_2023__SRR15925267__bin.16 Actinomycetota;Actinomycetes;Streptomycetales;Streptomycetaceae;Streptomyces Streptomyces thermoviolaceus keem keem Plant Grain barley starter culture solid low mixed none 3-7 days TomarS_2023__SRR15925267__bin.7 100 0.34 99 1714535 37.12 35521 SAMN21449276 SRR15925267 India PRJNA763767 SRP337504 NCBI Tomar S, Mitra D, Kumar G, Kashyap P, Sharma M, Kumar S, Sridhar K, Pant K. Microbial Diversity and Functional Potential of Keem: A Traditional Starter Culture for Alcoholic Beverage-Application of Next-Generation Amplicon and Shotgun Metagenome Sequences. Mol Biotechnol. 2023 Aug 11. doi: 10.1007/s12033-023-00839-3. KharnaiorP_2023__SRR22859379__bin.8 KharnaiorP_2023__SRR22859379__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus keem keem Plant Grain barley starter culture solid low mixed none 3-7 days TomarS_2023__SRR15925267__bin.8 53.33 3.66 524 1397963 38.55 2724 SAMN21449276 SRR15925267 India PRJNA763767 SRP337504 NCBI Tomar S, Mitra D, Kumar G, Kashyap P, Sharma M, Kumar S, Sridhar K, Pant K. Microbial Diversity and Functional Potential of Keem: A Traditional Starter Culture for Alcoholic Beverage-Application of Next-Generation Amplicon and Shotgun Metagenome Sequences. Mol Biotechnol. 2023 Aug 11. doi: 10.1007/s12033-023-00839-3. YulandiA_2020__SRS6115052__bin.21 TomarS_2023__SRR15925267__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella paramesenteroides keem keem Plant Grain barley starter culture solid low mixed none 3-7 days GonzalezOrozcoB_2023__SRR19505782__bin.1 64.03 0.44 41 2832911 55.38 107061 SAMN28742956 SRR19505782 USA PRJNA843464 SRP378018 NCBI González-Orozco BD, García-Cano I, Escobar-Zepeda A, Jiménez-Flores R, Álvarez VB. Metagenomic analysis and antibacterial activity of kefir microorganisms. J Food Sci. 2023 Jul;88(7):2933-2949. doi: 10.1111/1750-3841.16614. FontanaF_2023__SRR20746854__bin.2 GonzalezOrozcoB_2023__SRR19505782__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter Enterobacter intestinihominis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days GonzalezOrozcoB_2023__SRR19505782__bin.12 93.64 0.67 188 4463152 66.68 37331 SAMN28742956 SRR19505782 USA PRJNA843464 SRP378018 NCBI González-Orozco BD, García-Cano I, Escobar-Zepeda A, Jiménez-Flores R, Álvarez VB. Metagenomic analysis and antibacterial activity of kefir microorganisms. J Food Sci. 2023 Jul;88(7):2933-2949. doi: 10.1111/1750-3841.16614. GonzalezOrozcoB_2023__SRR19505782__bin.12 GonzalezOrozcoB_2023__SRR19505782__bin.12 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Xanthomonadaceae;Stenotrophomonas Stenotrophomonas riyadhensis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days GonzalezOrozcoB_2023__SRR19505782__bin.5 54.45 0 21 1120864 41.79 66690 SAMN28742956 SRR19505782 USA PRJNA843464 SRP378018 NCBI González-Orozco BD, García-Cano I, Escobar-Zepeda A, Jiménez-Flores R, Álvarez VB. Metagenomic analysis and antibacterial activity of kefir microorganisms. J Food Sci. 2023 Jul;88(7):2933-2949. doi: 10.1111/1750-3841.16614. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days LeechJ_2020__ERS3967700__bin.4 99.47089947 0.529100529 157 1990722 37.85 28006 ERS3967700 ERR4757815 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days LeechJ_2020__ERS3967700__bin.1 99.87421384 0.377358491 75 2395893 35.28 68565 ERS3967700 ERR4757815 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 LeechJ_2020__ERS3967700__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days LeechJ_2020__ERS3967700__bin.2 54.4 0.6 2572 7599657 41.73 3067 ERS3967700 ERR4757815 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK065-1-L-08h-05B1_S62__bin.1 LeechJ_2020__ERS3967700__bin.2 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia fermentans kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days LeechJ_2020__ERS3967725__bin.1 83.75132334 4.213836478 427 2016581 35.72 5952 ERS3967725 ERR4757840 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 LeechJ_2020__ERS3967725__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days LeechJ_2020__ERS3967726__bin.2 58.77192982 1.754385965 1176 3868585 59.13 3595 ERS3967726 ERR4757841 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. WalshL_xxxx__D9__bin.6 LeechJ_2020__ERS3967726__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E helleri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days SalgadoTS_2021__SRR13801804__bin.2 94.9 0.27 83 2031193 37.21 42606 SAMN18053613 SRR13801804 Mexico PRJNA704713 SRP308506 NCBI Tenorio-Salgado S, Castelán-Sánchez HG, Dávila-Ramos S, Huerta-Saquero A, Rodríguez-Morales S, Merino-Pérez E, Roa de la Fuente LF, Solis-Pereira SE, Pérez-Rueda E, Lizama-Uc G. Metagenomic analysis and antimicrobial activity of two fermented milk kefir samples. Microbiologyopen. 2021 Mar;10(2):e1183. doi: 10.1002/mbo3.1183. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days SalgadoTS_2021__SRR13801804__bin.3 99.82 0.09 55 2214321 41.93 62782 SAMN18053613 SRR13801804 Mexico PRJNA704713 SRP308506 NCBI Tenorio-Salgado S, Castelán-Sánchez HG, Dávila-Ramos S, Huerta-Saquero A, Rodríguez-Morales S, Merino-Pérez E, Roa de la Fuente LF, Solis-Pereira SE, Pérez-Rueda E, Lizama-Uc G. Metagenomic analysis and antimicrobial activity of two fermented milk kefir samples. Microbiologyopen. 2021 Mar;10(2):e1183. doi: 10.1002/mbo3.1183. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days SalgadoTS_2021__SRR13801805__bin.2 99.79 0.09 50 2187849 41.95 66690 SAMN18053612 SRR13801805 Mexico PRJNA704713 SRP308506 NCBI Tenorio-Salgado S, Castelán-Sánchez HG, Dávila-Ramos S, Huerta-Saquero A, Rodríguez-Morales S, Merino-Pérez E, Roa de la Fuente LF, Solis-Pereira SE, Pérez-Rueda E, Lizama-Uc G. Metagenomic analysis and antimicrobial activity of two fermented milk kefir samples. Microbiologyopen. 2021 Mar;10(2):e1183. doi: 10.1002/mbo3.1183. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days SalgadoTS_2021__SRR13801805__bin.3 84.5 0 58 1527340 38.1 49098 SAMN18053612 SRR13801805 Mexico PRJNA704713 SRP308506 NCBI Tenorio-Salgado S, Castelán-Sánchez HG, Dávila-Ramos S, Huerta-Saquero A, Rodríguez-Morales S, Merino-Pérez E, Roa de la Fuente LF, Solis-Pereira SE, Pérez-Rueda E, Lizama-Uc G. Metagenomic analysis and antimicrobial activity of two fermented milk kefir samples. Microbiologyopen. 2021 Mar;10(2):e1183. doi: 10.1002/mbo3.1183. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshAM_2016__ERS1354636__bin.1 87.08994709 0.771604938 377 1445747 38.61 4658 ERS1354636 ERR1653130 France PRJEB15432 ERP017163 NCBI Walsh, A.M., Crispie, F., Kilcawley, K., O’Sullivan, O., O’Sullivan, M.G., Claesson, M.J., and Cotter, P.D. (2016). Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir. mSystems 1. 10.1128/mSystems.00052-16. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshAM_2016__ERS1354638__bin.4 86.46699421 1.322751323 389 1406245 38.56 4193 ERS1354638 ERR1653132 United Kingdom PRJEB15432 ERP017163 NCBI Walsh, A.M., Crispie, F., Kilcawley, K., O’Sullivan, O., O’Sullivan, M.G., Claesson, M.J., and Cotter, P.D. (2016). Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir. mSystems 1. 10.1128/mSystems.00052-16. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshAM_2016__ERS1354642__bin.5 51.48881471 0.529100529 306 846706 38.28 2802 ERS1354642 ERR1653136 Ireland PRJEB15432 ERP017163 NCBI Walsh, A.M., Crispie, F., Kilcawley, K., O’Sullivan, O., O’Sullivan, M.G., Claesson, M.J., and Cotter, P.D. (2016). Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir. mSystems 1. 10.1128/mSystems.00052-16. GCF_009913915.1_ASM991391v1_genomic WalshAM_2016__ERS1354642__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshAM_2016__ERS1354644__bin.1 82.09725169 0.405844156 445 1616805 38.33 4215 ERS1354644 ERR1653138 France PRJEB15432 ERP017163 NCBI Walsh, A.M., Crispie, F., Kilcawley, K., O’Sullivan, O., O’Sullivan, M.G., Claesson, M.J., and Cotter, P.D. (2016). Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir. mSystems 1. 10.1128/mSystems.00052-16. MAG_S8 WalshAM_2016__ERS1354644__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshAM_2016__ERS1354645__bin.1 83.66546162 1.006001574 471 1576209 38.26 3636 ERS1354645 ERR1653139 Ireland PRJEB15432 ERP017163 NCBI Walsh, A.M., Crispie, F., Kilcawley, K., O’Sullivan, O., O’Sullivan, M.G., Claesson, M.J., and Cotter, P.D. (2016). Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir. mSystems 1. 10.1128/mSystems.00052-16. MAG_S8 WalshAM_2016__ERS1354645__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshAM_2016__ERS1354646__bin.1 61.34057089 0.645833333 423 1205287 42.16 2997 ERS1354646 ERR1653140 United Kingdom PRJEB15432 ERP017163 NCBI Walsh, A.M., Crispie, F., Kilcawley, K., O’Sullivan, O., O’Sullivan, M.G., Claesson, M.J., and Cotter, P.D. (2016). Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir. mSystems 1. 10.1128/mSystems.00052-16. SalgadoTS_2021__SRR13801804__bin.3 WalshAM_2016__ERS1354646__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshAM_2016__ERS1354646__bin.3 93.34244703 0.408163265 303 1835041 37.75 7899 ERS1354646 ERR1653140 United Kingdom PRJEB15432 ERP017163 NCBI Walsh, A.M., Crispie, F., Kilcawley, K., O’Sullivan, O., O’Sullivan, M.G., Claesson, M.J., and Cotter, P.D. (2016). Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir. mSystems 1. 10.1128/mSystems.00052-16. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshAM_2016__ERS1354648__bin.3 51.27452197 0.529100529 289 897273 38.35 3322 ERS1354648 ERR1653142 Ireland PRJEB15432 ERP017163 NCBI Walsh, A.M., Crispie, F., Kilcawley, K., O’Sullivan, O., O’Sullivan, M.G., Claesson, M.J., and Cotter, P.D. (2016). Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir. mSystems 1. 10.1128/mSystems.00052-16. GCF_009913915.1_ASM991391v1_genomic WalshAM_2016__ERS1354648__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshAM_2016__ERS1354648__bin.1 77.5862069 0 421 2157286 58.87 5985 ERS1354648 ERR1653142 Ireland PRJEB15432 ERP017163 NCBI Walsh, A.M., Crispie, F., Kilcawley, K., O’Sullivan, O., O’Sullivan, M.G., Claesson, M.J., and Cotter, P.D. (2016). Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir. mSystems 1. 10.1128/mSystems.00052-16. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__A10__bin.2 52.03761755 0 414 1200561 35.63 3059 ERS16281907 ERR11865276 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 WalshL_xxxx__B1__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__A10__bin.1 98.01886792 1.886792453 136 2334427 35.64 31049 ERS16281907 ERR11865276 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__A11__bin.1 75.28735632 0 278 1991942 34.99 9885 ERS16281908 ERR11865277 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 WalshL_xxxx__B1__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__A11__bin.2 94.74089341 4.842767296 216 2418286 35.21 19798 ERS16281908 ERR11865277 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__A12__bin.2 71.86520376 0 379 1738148 35.1 5582 ERS16281909 ERR11865278 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 WalshL_xxxx__B1__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__A12__bin.4 95.64051347 2.48427673 158 2302047 35.47 23978 ERS16281909 ERR11865278 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__A12__bin.3 89.75494743 0 238 1540230 36.77 8505 ERS16281909 ERR11865278 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__A12__bin.5 62.18905473 0 51 1505381 54.44 57755 ERS16281909 ERR11865278 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__A6__bin.4 86.47266314 0.529100529 302 1373574 38.45 5641 ERS16281915 ERR11865284 China PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__A6__bin.1 92.8376215 4.685534591 501 2403032 35.31 5608 ERS16281915 ERR11865284 China PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__A6__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__A6__bin.7 54.65652768 1.298701299 121 1095675 37.18 11091 ERS16281915 ERR11865284 China PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__A6__bin.2 79.35582759 1.428571429 297 1406786 38.13 5822 ERS16281915 ERR11865284 China PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__A7__bin.4 73.90652557 0 308 1110190 38.59 4027 ERS16281916 ERR11865285 China PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__A7__bin.1 60.16578119 0 166 968288 36.55 7409 ERS16281916 ERR11865285 China PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__A8__bin.1 96.64902998 1.058201058 147 1624218 37.95 16172 ERS16281917 ERR11865286 China PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__A9__bin.3 90.81128748 2.116402116 265 1475666 38.29 7160 ERS16281918 ERR11865287 China PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__A9__bin.1 62.53867516 2.012578616 315 1165844 36.06 4331 ERS16281918 ERR11865287 China PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__A9__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__B1__bin.2 76.72413793 0 323 1898599 35.15 7898 ERS16281922 ERR11865291 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 WalshL_xxxx__B1__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__B1__bin.1 94.78025231 2.295597484 223 2239582 35.59 15661 ERS16281922 ERR11865291 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__B1__bin.3 94.76858134 0.165837479 202 2505743 54.42 16778 ERS16281922 ERR11865291 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__B1__bin.5 68.77213695 0 125 1109680 37.26 11688 ERS16281922 ERR11865291 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__B10__bin.2 56.06060606 0 442 1580223 35.3 3961 ERS16281919 ERR11865288 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 WalshL_xxxx__B6__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__B10__bin.1 99.62264151 0.377358491 80 2289338 35.47 56384 ERS16281919 ERR11865288 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__B11__bin.3 56.98113208 0 26 1141947 35.78 112693 ERS16281920 ERR11865289 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__B12__bin.6 82.2060321 0.284090909 402 1922453 35.26 5803 ERS16281921 ERR11865290 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 WalshL_xxxx__B6__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__B12__bin.5 77.25119678 2.377863929 315 1153188 38.56 4051 ERS16281921 ERR11865290 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__B12__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__B12__bin.4 98.7194157 0.943396226 134 2373320 35.33 32399 ERS16281921 ERR11865290 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__B12__bin.1 89.22339062 0.995024876 407 2244398 58.62 7109 ERS16281921 ERR11865290 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__B12__bin.2 84.81060606 0.541125541 187 1587480 36.77 10736 ERS16281921 ERR11865290 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__B2__bin.2 99.0530303 1.160801564 161 2334390 35.12 22054 ERS16281923 ERR11865292 Belgium PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MASTER_WP4_UNINA_2__O-26.1__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__B2__bin.1 66.80611056 0 183 2941266 58.74 21935 ERS16281923 ERR11865292 Belgium PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__D9__bin.6 WalshL_xxxx__D9__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E helleri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__B4__bin.4 87.5541692 1.352201258 154 2052732 35.48 20433 ERS16281925 ERR11865294 Belgium PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__B4__bin.3 82.61562998 0.535714286 300 1467170 36.89 6196 ERS16281925 ERR11865294 Belgium PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__B4__bin.1 88.98324644 1.17965368 974 4638988 58.45 5876 ERS16281925 ERR11865294 Belgium PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__D9__bin.6 WalshL_xxxx__D9__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E helleri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__B5__bin.2 87.0323832 0.649350649 287 1594337 36.64 7072 ERS16281926 ERR11865295 Belgium PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__B6__bin.4 97.65456989 1.297061524 185 2326031 35.01 22275 ERS16281927 ERR11865296 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 WalshL_xxxx__B6__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__B6__bin.2 93.63233632 1.06918239 203 2307983 35.3 18815 ERS16281927 ERR11865296 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__B7__bin.1 99.62264151 0.943396226 101 2610102 35.3 59885 ERS16281928 ERR11865297 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__B7__bin.3 76.99977512 0.367543712 369 1354025 37.23 4263 ERS16281928 ERR11865297 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__B7__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__B8__bin.4 95.14991182 0.396825397 304 1558906 38.16 6727 ERS16281929 ERR11865298 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic FontanaF_2023__SRR20746925__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__B8__bin.1 96.93869363 0 263 2806946 54.11 15794 ERS16281929 ERR11865298 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__B9__bin.5 72.33846401 0.529100529 329 1061023 38.54 3533 ERS16281930 ERR11865299 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__B9__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__B9__bin.2 100 0.943396226 71 2514952 35.41 70002 ERS16281930 ERR11865299 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__B9__bin.4 97.27170599 0.497512438 148 2708133 54.11 27426 ERS16281930 ERR11865299 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__B9__bin.6 71.68753865 0 152 1257075 35.97 11123 ERS16281930 ERR11865299 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__C1__bin.1 73.50523005 0.264550265 374 1341880 38.1 4231 ERS16281934 ERR11865303 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__C1__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__C1__bin.5 69.81132075 0 74 1764645 35.25 49890 ERS16281934 ERR11865303 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__C10__bin.2 66.03773585 0 41 1382195 35.67 61859 ERS16281931 ERR11865300 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__C11__bin.2 73.58490566 0 57 1672618 35.72 47139 ERS16281932 ERR11865301 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__C12__bin.1 69.38509519 0.852272727 472 1936398 35.31 4711 ERS16281933 ERR11865302 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 WalshL_xxxx__B6__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__C12__bin.4 98.90222985 0.754716981 96 2290528 35.52 38951 ERS16281933 ERR11865302 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__C12__bin.5 93.45394241 0.497512438 229 2563724 54.41 18515 ERS16281933 ERR11865302 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__C2__bin.1 87.5 1.552353896 318 2101342 41.9 8094 ERS16281935 ERR11865304 Finland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__C2__bin.4 84.74025974 0 109 1543155 38.26 22711 ERS16281935 ERR11865304 Finland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__C3__bin.2 99.18132942 0.792011019 95 2219907 35.05 36188 ERS16281936 ERR11865305 Finland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__C3__bin.3 71.0031348 0 375 2135732 35.58 7539 ERS16281936 ERR11865305 Finland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__U-2-10__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__C3__bin.1 92.64069264 0.324675325 262 1706492 38.02 8539 ERS16281936 ERR11865305 Finland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__C4__bin.6 96.04402715 0.852272727 123 2230663 34.83 32509 ERS16281937 ERR11865306 Finland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__C4__bin.2 79.62382445 0 290 2345547 35.37 12553 ERS16281937 ERR11865306 Finland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__U-2-10__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__C4__bin.3 90.70933213 1.990049751 404 2173988 58.92 6656 ERS16281937 ERR11865306 Finland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__C4__bin.4 93.83116883 0.649350649 111 1647424 38.05 20926 ERS16281937 ERR11865306 Finland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__C5__bin.1 97.59005146 0.377358491 76 2192544 34.97 50599 ERS16281938 ERR11865307 Finland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__C5__bin.4 91.9359476 0.619946092 237 1817794 40.73 10431 ERS16281938 ERR11865307 Finland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746866__bin.6 WalshL_xxxx__F1__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__C5__bin.5 71.86520376 0 435 2153428 35.65 5966 ERS16281938 ERR11865307 Finland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__U-2-10__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__C5__bin.3 90.97636816 0.746268657 412 2260997 58.7 7139 ERS16281938 ERR11865307 Finland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__C5__bin.6 95.77922078 0.324675325 195 1790299 37.68 12972 ERS16281938 ERR11865307 Finland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__C6__bin.1 90.76101928 0.196514012 274 1653917 36.63 8039 ERS16281939 ERR11865308 Italy PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__C7__bin.1 51.72413793 0 62 904395 35.42 25887 ERS16281940 ERR11865309 Italy PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__C8__bin.5 67.9245283 0 36 1445435 35.76 73160 ERS16281941 ERR11865310 Italy PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__C8__bin.6 94.12106136 2.487562189 234 2733320 54.16 17430 ERS16281941 ERR11865310 Italy PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__C8__bin.2 70.0487013 0.432900433 103 1273696 35.63 19284 ERS16281941 ERR11865310 Italy PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__C9__bin.7 69.43396226 2.264150943 77 1886798 35.13 62006 ERS16281942 ERR11865311 Italy PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__C9__bin.2 60.34482759 0 63 1022809 35.78 25904 ERS16281942 ERR11865311 Italy PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D1__bin.6 75.09433962 0.094339623 64 1614325 35.46 44258 ERS16281946 ERR11865315 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D1__bin.7 96.18573798 0.124378109 65 2617399 54.34 70603 ERS16281946 ERR11865315 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D1__bin.4 51.72413793 0 476 1582977 59.04 3621 ERS16281946 ERR11865315 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D10__bin.1 63.01886792 0.377358491 42 1267923 35.78 61873 ERS16281943 ERR11865312 Tunisia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D11__bin.2 56.98113208 0 47 1149516 35.74 36984 ERS16281944 ERR11865313 Tunisia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D12__bin.4 71.69811321 0.094339623 55 1553567 35.75 51188 ERS16281945 ERR11865314 Tunisia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D12__bin.2 84.47841438 0 210 2228111 53.82 15414 ERS16281945 ERR11865314 Tunisia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__D12__bin.2 WalshL_xxxx__D12__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D2__bin.4 98.79245283 1.886792453 140 2349620 35.51 32310 ERS16281947 ERR11865316 Israel PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D2__bin.1 59.36001195 0.3125 467 1592382 42.07 3778 ERS16281947 ERR11865316 Israel PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D2__bin.3 96.83195592 3.568336425 180 1954812 37.71 18106 ERS16281947 ERR11865316 Israel PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D2__bin.2 60.34482759 0 241 865516 35.92 3824 ERS16281947 ERR11865316 Israel PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__D2__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D3__bin.4 74.67630854 2.999381571 265 1511981 38.46 7056 ERS16281948 ERR11865317 Israel PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D4__bin.1 77.73584906 0.377358491 85 1727635 35.79 38963 ERS16281949 ERR11865318 Israel PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D4__bin.2 95.95771144 0.995024876 157 2339516 54.66 21530 ERS16281949 ERR11865318 Israel PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D5__bin.6 99.05660377 1.509433962 184 2493703 35.28 28172 ERS16281950 ERR11865319 Israel PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D5__bin.3 80.69372103 0 460 2196051 54.4 6008 ERS16281950 ERR11865319 Israel PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D6__bin.5 94.19921875 0.401785714 172 2138617 41.91 17817 ERS16281951 ERR11865320 Denmark PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D6__bin.3 95.97845336 0.541125541 155 1711684 37.43 20298 ERS16281951 ERR11865320 Denmark PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D6__bin.1 61.67109406 0 72 882221 36.67 20185 ERS16281951 ERR11865320 Denmark PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D7__bin.6 88.52191268 4.788961039 319 1866394 35.23 6985 ERS16281952 ERR11865321 Denmark PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 WalshL_xxxx__D7__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D7__bin.7 75.65830721 0 440 2283024 34.95 6663 ERS16281952 ERR11865321 Denmark PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D7__bin.4 94.01041667 1.458333333 225 2155065 42.01 13441 ERS16281952 ERR11865321 Denmark PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D7__bin.8 58.90924552 0.216450216 161 1266319 35.04 11985 ERS16281952 ERR11865321 Denmark PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__D7__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D8__bin.5 93.97997835 1.925505051 344 2058927 35.11 7782 ERS16281953 ERR11865322 Denmark PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 WalshL_xxxx__D8__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D8__bin.3 86.14229911 1.391059028 328 2069917 41.98 7874 ERS16281953 ERR11865322 Denmark PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D8__bin.8 56.11471861 0 66 973414 38.6 26723 ERS16281953 ERR11865322 Denmark PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D8__bin.4 95.62150569 0.468975469 505 5604874 58.53 15436 ERS16281953 ERR11865322 Denmark PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__D9__bin.6 WalshL_xxxx__D9__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E helleri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D9__bin.1 93.77746358 4.04040404 381 2248349 34.8 7946 ERS16281954 ERR11865323 Denmark PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 WalshL_xxxx__G3__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D9__bin.2 86.7733457 0.649350649 151 1515673 37.56 14774 ERS16281954 ERR11865323 Denmark PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D9__bin.3 73.68794625 0.993703266 163 1350381 35.92 11381 ERS16281954 ERR11865323 Denmark PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__D9__bin.6 96.10805861 0.360750361 327 5432257 58.66 24093 ERS16281954 ERR11865323 Denmark PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__D9__bin.6 WalshL_xxxx__D9__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E helleri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__E1__bin.1 98.86792453 0.377358491 96 2266598 35.49 44258 ERS16281958 ERR11865327 Tunisia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__E10__bin.5 77.45283019 0.377358491 102 1873533 35.41 35189 ERS16281955 ERR11865324 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__E10__bin.4 69.60080988 0.649350649 328 1339797 38.39 4673 ERS16281955 ERR11865324 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__E10__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__E11__bin.3 76.22641509 0.377358491 87 1921258 35.21 49247 ERS16281956 ERR11865325 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__E11__bin.1 78.20428195 1.001082251 880 4047939 58.75 5722 ERS16281956 ERR11865325 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__D9__bin.6 WalshL_xxxx__D9__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E helleri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__E12__bin.5 96.03773585 0.691823899 101 1935151 40.55 25625 ERS16281957 ERR11865326 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746866__bin.6 WalshL_xxxx__F1__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__E12__bin.7 76.60377358 0.377358491 94 1934611 35.19 51167 ERS16281957 ERR11865326 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__E12__bin.3 96.89177066 1.073232323 380 5696832 58.48 22639 ERS16281957 ERR11865326 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__D9__bin.6 WalshL_xxxx__D9__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E helleri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__E2__bin.3 98.37662338 0.324675325 145 1961637 37.45 26870 ERS16281959 ERR11865328 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__E2__bin.4 53.14962184 0.276114578 722 2301685 58.87 3271 ERS16281959 ERR11865328 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__D9__bin.6 WalshL_xxxx__D9__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E helleri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__E3__bin.1 87.22195171 0.377358491 261 2067302 34.94 10748 ERS16281960 ERR11865329 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MASTER_WP4_UNINA_2__O-26.1__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__E3__bin.4 62.86427267 0.672550213 86 1285131 35.89 26655 ERS16281960 ERR11865329 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__E3__bin.2 66.63101452 0.600157418 261 1229864 38.3 5691 ERS16281960 ERR11865329 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__E4__bin.4 59.48275862 0 239 1724076 34.74 9779 ERS16281961 ERR11865330 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MASTER_WP4_UNINA_2__O-26.1__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__E4__bin.8 70.68035191 0.283018868 107 1537631 35.69 22563 ERS16281961 ERR11865330 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__E4__bin.5 71.10780937 0.03417635 273 1266741 37.42 5883 ERS16281961 ERR11865330 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__E4__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__E5__bin.1 75.86206897 0 353 2021996 35.1 7337 ERS16281962 ERR11865331 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MASTER_WP4_UNINA_2__O-26.1__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__E5__bin.3 96.74520002 3.396226415 152 2387420 35.27 27157 ERS16281962 ERR11865331 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__E5__bin.2 65.25632262 0.059031877 185 1057394 37.28 7203 ERS16281962 ERR11865331 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__E6__bin.2 78.01527403 1.238993711 497 1915205 35.87 4416 ERS16281963 ERR11865332 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__E6__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__E6__bin.3 63.10507674 0.683526999 106 1274148 36.59 22841 ERS16281963 ERR11865332 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 MAG_357 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__E7__bin.3 84.24528302 0.754716981 120 2172247 35.07 40289 ERS16281964 ERR11865333 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__E7__bin.1 77.68932366 0.454545455 393 1558575 38.32 4721 ERS16281964 ERR11865333 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__E8__bin.3 76.22641509 0.377358491 69 1726674 35.72 44258 ERS16281965 ERR11865334 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__E8__bin.5 97.4025974 0.25974026 231 1883187 37.65 13592 ERS16281965 ERR11865334 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__E9__bin.2 99.24528302 1.132075472 122 2406984 35.34 41240 ERS16281966 ERR11865335 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__E9__bin.3 85.35890346 0.885478158 342 1611117 38.17 5894 ERS16281966 ERR11865335 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__F1__bin.5 97.28545344 0.880503145 185 2068802 40.34 17064 ERS16281970 ERR11865339 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746866__bin.6 WalshL_xxxx__F1__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__F1__bin.1 98.49056604 0.471698113 86 2180152 35.58 43440 ERS16281970 ERR11865339 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__F1__bin.2 82.11551976 1.264007125 403 1475409 38.39 4293 ERS16281970 ERR11865339 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__F1__bin.3 50.70175439 0 816 2245543 58.79 2828 ERS16281970 ERR11865339 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__D9__bin.6 WalshL_xxxx__F1__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E helleri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__F10__bin.4 60.94609164 2.129380054 494 1398808 36.35 2911 ERS16281967 ERR11865336 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__F10__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__F10__bin.1 96.9375 0 215 2260481 41.9 18601 ERS16281967 ERR11865336 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__F10__bin.2 98.37662338 0.278293135 116 2036556 37.38 42825 ERS16281967 ERR11865336 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__F11__bin.1 65.830721 0 445 1920186 35.23 5078 ERS16281968 ERR11865337 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MASTER_WP4_UNINA_2__O-26.1__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__F11__bin.5 77.30840531 1.014386616 346 1416397 38.32 4740 ERS16281968 ERR11865337 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__F11__bin.6 84.92034177 0.787962038 680 3981760 58.58 7853 ERS16281968 ERR11865337 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__D9__bin.6 WalshL_xxxx__D9__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E helleri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__F12__bin.3 81.06060606 1.724137931 336 2289547 34.8 9809 ERS16281969 ERR11865338 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MASTER_WP4_UNINA_2__O-26.1__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__F12__bin.4 64.49259485 0.222984563 95 1359739 35.6 30416 ERS16281969 ERR11865338 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__F12__bin.2 82.50710158 0.278293135 375 1571265 37.88 5233 ERS16281969 ERR11865338 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__F12__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__F12__bin.1 79.12522254 0.877247752 1049 4267596 58.65 4776 ERS16281969 ERR11865338 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__D9__bin.6 WalshL_xxxx__F12__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E helleri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__F2__bin.1 96.42857143 0.216450216 198 1917258 37.64 17438 ERS16281971 ERR11865340 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__F2__bin.3 89.68525579 0.683106576 759 4314345 58.75 8838 ERS16281971 ERR11865340 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__D9__bin.6 WalshL_xxxx__D9__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E helleri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__F3__bin.1 67.24137931 0 120 1360605 35.26 16668 ERS16281972 ERR11865341 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MASTER_WP4_UNINA_2__O-26.1__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__F3__bin.4 64.06684004 0.471698113 78 1325172 35.83 23992 ERS16281972 ERR11865341 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__F4__bin.4 83.95314027 0.410353535 211 2104262 35.05 16978 ERS16281973 ERR11865342 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MASTER_WP4_UNINA_2__O-26.1__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__F4__bin.3 64.05932186 0.649350649 355 1185844 38.77 3573 ERS16281973 ERR11865342 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__F4__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__F4__bin.2 52.28070175 0 864 2371623 58.76 2826 ERS16281973 ERR11865342 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__D9__bin.6 WalshL_xxxx__F4__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E helleri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__F5__bin.1 81.34796238 0 198 2175806 34.9 17419 ERS16281974 ERR11865343 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MASTER_WP4_UNINA_2__O-26.1__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__F5__bin.5 73.51382304 0.330687831 335 1155047 38.26 3827 ERS16281974 ERR11865343 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__F5__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__F5__bin.4 90.16780096 1.352201258 130 1971659 35.7 26742 ERS16281974 ERR11865343 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__F5__bin.3 92.83549784 0.297619048 248 1911985 37.61 12132 ERS16281974 ERR11865343 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__F6__bin.1 92.06349206 0 15 1781390 37.61 216861 ERS16281975 ERR11865344 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__F7__bin.4 92.33657136 2.840909091 274 2498614 34.68 16193 ERS16281976 ERR11865345 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MASTER_WP4_UNINA_2__O-26.1__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__F7__bin.2 71.52279644 2.264150943 134 1714712 35.28 20430 ERS16281976 ERR11865345 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__F8__bin.2 87.46451417 0.793650794 1037 4694753 58.54 5439 ERS16281977 ERR11865346 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__D9__bin.6 WalshL_xxxx__D9__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E helleri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__F9__bin.2 54.38596491 0 47 1119572 37.38 50485 ERS16281978 ERR11865347 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__G1__bin.4 63.24451411 0 514 1925179 35.4 4398 ERS16281982 ERR11865351 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 WalshL_xxxx__G1__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__G1__bin.3 95.97402597 0 187 1853532 37.89 14007 ERS16281982 ERR11865351 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__G10__bin.2 91.83818809 1.492537313 360 2357928 58.72 8655 ERS16281979 ERR11865348 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 WalshL_xxxx__G12__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__G10__bin.4 61.01108937 1.095890411 231 2183473 38.91 13566 ERS16281979 ERR11865348 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MASTER_WP4_FFoQSI_2__VB06-21__bin.6 WalshL_xxxx__G2__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter guillouiae kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__G11__bin.4 73.58934169 0 202 2052537 35.45 15919 ERS16281980 ERR11865349 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__U-2-10__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__G11__bin.3 53.44827586 0 675 2538079 39.16 4352 ERS16281980 ERR11865349 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MASTER_WP4_FFoQSI_2__VB06-21__bin.6 WalshL_xxxx__G2__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter guillouiae kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__G11__bin.1 56.89655172 0 469 1571539 59.47 3656 ERS16281980 ERR11865349 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 WalshL_xxxx__G11__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__G12__bin.3 99.25373134 0.248756219 135 2482946 58.83 31206 ERS16281981 ERR11865350 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 WalshL_xxxx__G12__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__G2__bin.3 100 0 51 2256655 35.02 79273 ERS16281983 ERR11865352 Canada PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__G2__bin.1 68.49504111 0 323 1076770 38.32 3773 ERS16281983 ERR11865352 Canada PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__G2__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__G2__bin.2 90.39791259 2.98630137 685 3753852 38.74 7408 ERS16281983 ERR11865352 Canada PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MASTER_WP4_FFoQSI_2__VB06-21__bin.6 WalshL_xxxx__G2__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter guillouiae kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__G3__bin.1 78.40909091 0.189393939 43 1814411 35.15 83613 ERS16281984 ERR11865353 Canada PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 WalshL_xxxx__G3__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__G4__bin.2 85.51136364 0 39 1940183 34.92 79273 ERS16281985 ERR11865354 Canada PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__G4__bin.1 89.42680776 0.529100529 310 1406782 38.17 5595 ERS16281985 ERR11865354 Canada PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__G5__bin.2 55.3030303 0.189393939 36 1168977 35.28 84416 ERS16281986 ERR11865355 Canada PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 WalshL_xxxx__G3__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__G6__bin.2 64.63166971 0.883361921 126 1567986 35.32 27264 ERS16281987 ERR11865356 Portugal PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__U-2-10__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__G6__bin.4 89.57087054 0.160984848 290 2113459 41.9 9661 ERS16281987 ERR11865356 Portugal PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__G7__bin.2 86.02728175 1.25 371 2042107 41.95 6869 ERS16281988 ERR11865357 Portugal PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__G7__bin.3 91.66594171 0.059031877 319 1705735 38.06 6785 ERS16281988 ERR11865357 Portugal PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__G9__bin.3 93.53379839 1.262626263 154 2163393 34.79 22560 ERS16281990 ERR11865359 Portugal PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__G9__bin.2 79.65517241 0 159 2120822 35.37 23939 ERS16281990 ERR11865359 Portugal PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__U-2-10__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__G9__bin.4 93.29166667 0.625 165 2159526 41.94 17646 ERS16281990 ERR11865359 Portugal PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__G9__bin.1 72.07792208 0 126 1318815 37.25 16318 ERS16281990 ERR11865359 Portugal PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H1__bin.3 95.65251118 1.274845226 153 2192535 34.83 25856 ERS16281994 ERR11865363 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H1__bin.4 75.95709069 0.408805031 174 1832071 35.51 17082 ERS16281994 ERR11865363 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__U-2-10__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H1__bin.1 62.06896552 0 374 1876198 59.35 5969 ERS16281994 ERR11865363 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 WalshL_xxxx__G12__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H10__bin.2 96.18055556 1.988636364 356 2417954 34.7 9434 ERS16281991 ERR11865360 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H10__bin.5 97.41630277 0.145560408 88 1600709 39.39 27179 ERS16281991 ERR11865360 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H10__bin.3 98.35199005 0.746268657 146 2409740 58.72 25590 ERS16281991 ERR11865360 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H10__bin.6 88.55519481 0.742115028 143 1485988 36.76 14858 ERS16281991 ERR11865360 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H11__bin.5 93.56962482 2.749081726 346 2074713 35.01 7781 ERS16281992 ERR11865361 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H11__bin.1 50.11610175 0.087336245 75 799244 39.89 12240 ERS16281992 ERR11865361 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H11__bin.2 97.01492537 0.995024876 116 2228256 59.09 31596 ERS16281992 ERR11865361 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H11__bin.7 51.72413793 0 85 916159 35.9 20181 ERS16281992 ERR11865361 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H12__bin.10 93.02995392 4.071969697 331 2129861 35.03 8723 ERS16281993 ERR11865362 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H12__bin.3 95.92430859 0.207943439 113 1562065 39.49 19984 ERS16281993 ERR11865362 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H12__bin.11 56.89655172 0 105 1049788 35.65 18716 ERS16281993 ERR11865362 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H12__bin.7 66.83250415 0 44 1504731 59.48 65258 ERS16281993 ERR11865362 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H12__bin.9 53.44827586 0 30 1711182 54.29 82563 ERS16281993 ERR11865362 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H2__bin.1 56.66666667 1.095890411 206 2175669 38.84 13965 ERS16281995 ERR11865364 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MASTER_WP4_FFoQSI_2__VB06-21__bin.6 WalshL_xxxx__G2__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter guillouiae kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H3__bin.3 60.82055896 0 69 1156404 35.26 24780 ERS16281996 ERR11865365 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H3__bin.2 78.79310345 1.724137931 191 1952922 35.44 14181 ERS16281996 ERR11865365 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__U-2-10__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H3_S87__bin.14 96.67177642 2.051360378 192 2338875 34.77 25368 ERS16281997 ERR11865366 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H3_S87__bin.29 73.27586207 3.448275862 389 2523722 35.29 10081 ERS16281997 ERR11865366 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__U-2-10__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H3_S87__bin.26 67.28411939 0.541125541 181 1036656 38.83 7907 ERS16281997 ERR11865366 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MotaGutierrezJ_2021__SRR11602156__bin.13 WalshL_xxxx__H3_S87__bin.26 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus amylovorus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H3_S87__bin.11 95.00750751 3.406531532 368 2686756 54.16 9395 ERS16281997 ERR11865366 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__H3_S87__bin.11 WalshL_xxxx__H3_S87__bin.11 Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Prevotella Prevotella faecis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H3_S87__bin.16 65.13217679 2.839735646 496 1414822 55.34 2975 ERS16281997 ERR11865366 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__H3_S87__bin.16 WalshL_xxxx__H3_S87__bin.16 Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Alloprevotella Alloprevotella sp004552155 kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H3_S87__bin.19 96.30872483 1.677852349 293 2065727 52.24 10070 ERS16281997 ERR11865366 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__H3_S87__bin.19 WalshL_xxxx__H3_S87__bin.19 Bacillota;Clostridia;Oscillospirales;Butyricicoccaceae;Butyricicoccus_A Butyricicoccus A intestinisimiae kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H3_S87__bin.24 62.10190697 0.691823899 508 1575241 49.4 3264 ERS16281997 ERR11865366 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__H3_S87__bin.24 WalshL_xxxx__H3_S87__bin.24 Bacteroidota;Bacteroidia;Bacteroidales;Muribaculaceae;Sodaliphilus Sodaliphilus sp004557565 kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H3_S87__bin.25 67.2245149 0.632911392 419 1265822 53.23 3278 ERS16281997 ERR11865366 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__H3_S87__bin.25 WalshL_xxxx__H3_S87__bin.25 Bacillota;Negativicutes;Veillonellales;Dialisteraceae;Dialister Dialister sp000434475 kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H3_S87__bin.2 68.9046542 1.371308017 401 1202694 45.46 3186 ERS16281997 ERR11865366 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__H3_S87__bin.2 WalshL_xxxx__H3_S87__bin.2 Bacillota;Negativicutes;Selenomonadales;Selenomonadaceae;Anaerovibrio Anaerovibrio sp900548165 kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H3_S87__bin.33 92.18189964 3.790322581 470 2640586 29.75 7505 ERS16281997 ERR11865366 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__H3_S87__bin.33 WalshL_xxxx__H3_S87__bin.33 Bacillota;Clostridia;Clostridiales;Clostridiaceae;Clostridium Clostridium sp000435835 kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H3_S87__bin.34 88.00898204 4.505988024 382 1909915 54.62 6427 ERS16281997 ERR11865366 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__H3_S87__bin.34 WalshL_xxxx__H3_S87__bin.34 Bacillota;Negativicutes;Veillonellales;Megasphaeraceae;Megasphaera Megasphaera elsdenii kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H3_S87__bin.4 67.24137931 0 365 1908603 52.89 6662 ERS16281997 ERR11865366 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__H3_S87__bin.4 WalshL_xxxx__H3_S87__bin.4 Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Prevotella Prevotella sp000434975 kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H3_S87__bin.5 91.8227216 1.421610084 111 1459445 40.9 25896 ERS16281997 ERR11865366 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__H3_S87__bin.5 WalshL_xxxx__H3_S87__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus faecavium kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H3_S87__bin.8 98.90710383 1.366120219 187 1875833 38.54 19325 ERS16281997 ERR11865366 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. LeechJ_xxxx__AF78__bin.4 WalshL_xxxx__H3_S87__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus reuteri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H4__bin.2 95.22841131 2.758431085 208 2252017 34.83 19015 ERS16281998 ERR11865367 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H4__bin.1 90.05771962 2.672955975 301 2256426 35.48 11276 ERS16281998 ERR11865367 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__U-2-10__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H4__bin.3 51.19617225 2.631578947 969 2963801 58.85 3231 ERS16281998 ERR11865367 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__D9__bin.6 WalshL_xxxx__H4__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E helleri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H5__bin.2 92.80180841 2.967171717 121 2059936 35.02 23222 ERS16281999 ERR11865368 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H5__bin.3 52.19435737 0 101 1052441 36.11 15841 ERS16281999 ERR11865368 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__U-2-10__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H6__bin.2 96.50943396 2.327044025 282 2355278 35.61 16501 ERS16282000 ERR11865369 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H7__bin.1 70.94339623 0 51 1511129 35.86 53705 ERS16282001 ERR11865370 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H8__bin.1 96.79245283 0.336927224 256 2246952 35.71 16359 ERS16282002 ERR11865371 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H9__bin.1 61.72250262 0 321 1021655 38.21 3423 ERS16282003 ERR11865372 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__H9__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__H9__bin.2 98.86792453 0.377358491 108 2437271 35.53 37604 ERS16282003 ERR11865372 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I1__bin.6 100 0 28 2586606 53.89 137782 ERS16282007 ERR11865376 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I1__bin.8 95.81456685 3.389937107 347 2244850 34.83 8451 ERS16282007 ERR11865376 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I1__bin.7 60.34482759 0 103 1147272 35.95 18462 ERS16282007 ERR11865376 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I1__bin.1 56.71641791 0 16 1120140 59.19 124130 ERS16282007 ERR11865376 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I10__bin.3 51.51515152 0 21 1319552 34.9 91919 ERS16282004 ERR11865373 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I10__bin.2 76.94102903 1.004366812 326 1221830 39.62 4345 ERS16282004 ERR11865373 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. Wy2_bin.circ.1 WalshL_xxxx__I10__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I10__bin.4 92.64908138 0.059031877 276 1595433 36.82 7651 ERS16282004 ERR11865373 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I11__bin.1 100 0.377358491 38 2263243 35.06 92295 ERS16282005 ERR11865374 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I12__bin.4 100 0.754716981 35 2235816 35.08 91919 ERS16282006 ERR11865375 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I12__bin.2 95.04574756 0.145560408 108 1593245 39.3 23807 ERS16282006 ERR11865375 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I12__bin.3 50 0 67 824557 35.63 24589 ERS16282006 ERR11865375 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I2__bin.2 85.92436461 1.515151515 450 1838303 35.63 4729 ERS16282008 ERR11865377 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 WalshL_xxxx__I2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I2__bin.4 97.33577499 1.067442989 191 1596545 39.59 11892 ERS16282008 ERR11865377 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I2__bin.5 97.76119403 0.248756219 173 2345399 58.94 20047 ERS16282008 ERR11865377 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I2__bin.3 98.29545455 0 151 1887634 36.3 20083 ERS16282008 ERR11865377 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I3__bin.4 100 0.377358491 42 2256179 35.05 92295 ERS16282009 ERR11865378 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I3__bin.3 95.62417689 0.630761766 149 1600200 39.31 16363 ERS16282009 ERR11865378 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I3__bin.1 60.34482759 0 70 1010511 35.76 25639 ERS16282009 ERR11865378 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I4__bin.4 100 0 46 2221822 35.1 74924 ERS16282010 ERR11865379 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I4__bin.1 97.18340611 0.145560408 48 1596416 39.35 54875 ERS16282010 ERR11865379 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I4__bin.2 98.50746269 2.487562189 63 2792370 54.17 74946 ERS16282010 ERR11865379 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I4__bin.6 96.76616915 0.248756219 117 2252650 59.09 32381 ERS16282010 ERR11865379 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I4__bin.3 69.39935065 0 78 1154891 36.05 23606 ERS16282010 ERR11865379 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I5__bin.5 100 0.377358491 38 2229929 35.07 78627 ERS16282011 ERR11865380 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I5__bin.3 91.83476557 3.233830846 319 3034177 53.57 13607 ERS16282011 ERR11865380 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I5__bin.2 98.29545455 0 155 1865467 36.46 20675 ERS16282011 ERR11865380 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I6__bin.6 91.08805031 1.846361186 441 2080091 35.34 6050 ERS16282012 ERR11865381 New Zealand PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I6__bin.3 69.82758621 1.724137931 330 1459226 37.86 5529 ERS16282012 ERR11865381 New Zealand PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__I6__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I6__bin.1 69.39935065 0 67 1135199 36.05 25640 ERS16282012 ERR11865381 New Zealand PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I7__bin.4 100 0.754716981 36 2238720 35.08 92295 ERS16282013 ERR11865382 New Zealand PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I7__bin.2 68.75 0 85 1118562 35.66 24609 ERS16282013 ERR11865382 New Zealand PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I8__bin.4 100 0.754716981 71 2274620 35.02 52994 ERS16282014 ERR11865383 New Zealand PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I8__bin.2 96.51741294 0.248756219 99 2405069 59 38750 ERS16282014 ERR11865383 New Zealand PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I8__bin.3 97.6461039 0 147 1923199 36.27 21445 ERS16282014 ERR11865383 New Zealand PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I8__bin.1 57.21393035 0 30 1531161 54.04 80925 ERS16282014 ERR11865383 New Zealand PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I9__bin.5 99.62264151 0 40 2224064 35.07 79857 ERS16282015 ERR11865384 New Zealand PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I9__bin.3 96.26865672 0.248756219 115 2200426 59.21 30710 ERS16282015 ERR11865384 New Zealand PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I9__bin.6 57.46753247 0 80 1107278 37.16 18807 ERS16282015 ERR11865384 New Zealand PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__I9__bin.1 51.74129353 0 22 1441893 55.06 95127 ERS16282015 ERR11865384 New Zealand PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__J1__bin.7 93.97138541 0.568181818 147 2216781 34.95 28880 ERS16282019 ERR11865388 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__J1__bin.2 100 0 122 1702628 37.99 21483 ERS16282019 ERR11865388 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__J1__bin.1 78.76175549 0.574712644 235 2248066 35.4 14481 ERS16282019 ERR11865388 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__U-2-10__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__J1__bin.5 78.44827586 0 280 2419431 54.34 11101 ERS16282019 ERR11865388 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__J1__bin.3 55.17241379 0 200 880992 38.71 5041 ERS16282019 ERR11865388 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__J1__bin.4 76.23720976 2.489177489 174 1193781 36.09 8698 ERS16282019 ERR11865388 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__J10__bin.1 97.35449735 0 176 1565076 38.09 12140 ERS16282016 ERR11865385 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__J11__bin.4 74.9910262 2.436868687 289 1575723 35.14 6366 ERS16282017 ERR11865386 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 WalshL_xxxx__J11__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__J11__bin.2 69.54022989 0 359 1757628 35.85 5457 ERS16282017 ERR11865386 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__U-2-10__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__J12__bin.1 99.62264151 0.188679245 41 2352682 35.11 107167 ERS16282018 ERR11865387 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__J12__bin.3 97.88359788 0 106 1693765 37.91 26345 ERS16282018 ERR11865387 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__J2__bin.1 70.11135913 0.78125 466 1814325 42.1 4426 ERS16282020 ERR11865389 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__J2__bin.3 97.6461039 0 133 1900618 36.2 20822 ERS16282020 ERR11865389 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__J2__bin.2 65.15673981 0 503 1780611 58.43 4114 ERS16282020 ERR11865389 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__J3__bin.5 99.75124378 0.912106136 136 2438078 58.72 27348 ERS16282021 ERR11865390 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__J3__bin.7 98.11320755 0.691823899 238 2261394 35.17 14861 ERS16282021 ERR11865390 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__J3__bin.1 79.46428571 0 90 1437129 36.73 21428 ERS16282021 ERR11865390 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__J4__bin.4 99.62264151 1.446540881 83 2391820 35.04 50274 ERS16282022 ERR11865391 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__J4__bin.2 85.36069652 1.402080507 197 1883286 59.62 13808 ERS16282022 ERR11865391 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__J5__bin.2 51.13207547 0.377358491 23 1084539 35.39 173313 ERS16282023 ERR11865392 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__J5__bin.1 94.97064409 0 93 2559191 54.44 41840 ERS16282023 ERR11865392 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__J5__bin.4 60.63311688 0 72 1102684 36.99 19521 ERS16282023 ERR11865392 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__J6__bin.1 98.29545455 1.420454545 157 2087147 35.12 19813 ERS16282024 ERR11865393 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__J7__bin.2 100 0.377358491 40 2246869 35.09 92295 ERS16282025 ERR11865394 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__J8__bin.4 95.0503014 2.496556474 342 2133974 34.82 8229 ERS16282026 ERR11865395 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__J8__bin.2 90.54261364 0 261 2171475 41.99 10702 ERS16282026 ERR11865395 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__J8__bin.6 85.07462687 0 57 2187167 54.46 60523 ERS16282026 ERR11865395 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__J9__bin.1 99.24528302 0.754716981 41 2211641 35.08 92295 ERS16282027 ERR11865396 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__J9__bin.3 92.27518322 0 331 2782098 54.07 11627 ERS16282027 ERR11865396 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__k1__bin.2 99.62264151 0.943396226 43 2365632 35.13 107167 ERS16282031 ERR11865400 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__k1__bin.1 96.82539683 0.529100529 198 1776258 37.96 15128 ERS16282031 ERR11865400 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__k10__bin.4 99.62264151 1.446540881 83 2435753 35.05 74370 ERS16282028 ERR11865397 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__k10__bin.5 53.96825397 0 40 1027937 38.07 40544 ERS16282028 ERR11865397 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__k11__bin.1 98.86792453 0.566037736 42 2353789 35.09 83620 ERS16282029 ERR11865398 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__k11__bin.2 98.94179894 0 142 1726947 37.79 20031 ERS16282029 ERR11865398 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__k12__bin.1 99.62264151 0.566037736 41 2369281 35.13 104991 ERS16282030 ERR11865399 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__k12__bin.2 99.47089947 0 152 1750177 37.94 18734 ERS16282030 ERR11865399 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__k2__bin.3 52.65151515 0 23 1345621 34.85 92297 ERS16282032 ERR11865401 Singapore PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__k2__bin.2 90.88293651 0.733901515 342 2177955 42.04 8493 ERS16282032 ERR11865401 Singapore PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__k4__bin.1 63.63636364 0.378787879 27 1659414 35.03 104992 ERS16282034 ERR11865403 Singapore PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__k4__bin.3 99.21875 0.178571429 123 2317442 41.84 36778 ERS16282034 ERR11865403 Singapore PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__k4__bin.7 66.14052102 0.927643785 426 1307765 38.59 3276 ERS16282034 ERR11865403 Singapore PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__k4__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__k5__bin.1 96.4375 0.572916667 230 2274362 41.94 15659 ERS16282035 ERR11865404 Singapore PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__k5__bin.2 96.18573798 0.248756219 61 2614277 54.33 72182 ERS16282035 ERR11865404 Singapore PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__k5__bin.6 78.64170462 0.846474954 389 1487263 38.38 4645 ERS16282035 ERR11865404 Singapore PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__k5__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__k6__bin.3 99.62264151 1.320754717 153 2487226 35.28 34114 ERS16282036 ERR11865405 USA PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__k6__bin.1 79.72337869 0 240 1114035 36.66 5874 ERS16282036 ERR11865405 USA PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__k7__bin.4 55.47169811 0 55 1100207 36.07 34913 ERS16282037 ERR11865406 USA PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__k8__bin.4 72.9245283 0.566037736 106 1906928 35.18 34981 ERS16282038 ERR11865407 USA PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__k8__bin.3 56.19122257 1.724137931 152 982365 36.34 9501 ERS16282038 ERR11865407 USA PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 MAG_357 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__k9__bin.1 64.11949686 0 128 1833618 34.94 32619 ERS16282039 ERR11865408 USA PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__k9__bin.2 97.26368159 0.248756219 105 2380044 58.87 32219 ERS16282039 ERR11865408 USA PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__k9__bin.7 94.05499803 0.216450216 191 1687037 36.35 13015 ERS16282039 ERR11865408 USA PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__k9__bin.3 82.06293479 3.525046382 291 1531185 37.76 7278 ERS16282039 ERR11865408 USA PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__k9__bin.4 52.15087198 0.497512438 95 1437129 53.66 22044 ERS16282039 ERR11865408 USA PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L1__bin.5 99.62264151 0.188679245 46 2373839 35.1 104991 ERS16282043 ERR11865412 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L1__bin.2 96.2962963 0.264550265 191 1682540 38.05 12919 ERS16282043 ERR11865412 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L1__bin.3 96.42857143 0.278293135 131 1918551 37.74 22626 ERS16282043 ERR11865412 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L10__bin.1 51.13636364 0 14 963608 35.38 119734 ERS16282040 ERR11865409 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MASTER_WP4_UNINA_2__O-26.1__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L11__bin.2 100 0 48 2245672 35.11 76507 ERS16282041 ERR11865410 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L11__bin.1 98.67724868 0.529100529 181 1588052 38.12 12981 ERS16282041 ERR11865410 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L12__bin.2 100 0.754716981 37 2227634 35.08 91919 ERS16282042 ERR11865411 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L12__bin.1 99.47089947 0 101 1759322 37.7 34034 ERS16282042 ERR11865411 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L2__bin.4 97.4025974 0 135 1818489 37.62 24446 ERS16282044 ERR11865413 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L3__bin.1 83.25693246 0.574603967 877 4070631 58.75 6083 ERS16282045 ERR11865414 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__D9__bin.6 WalshL_xxxx__D9__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E helleri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L4__bin.2 86.44958409 0.503144654 397 1749368 40.75 5408 ERS16282046 ERR11865415 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746866__bin.6 WalshL_xxxx__F1__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L4__bin.1 99.62264151 0.754716981 101 2373263 35.42 47203 ERS16282046 ERR11865415 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L4__bin.4 85.77139137 0.59375 339 2087868 42.11 8566 ERS16282046 ERR11865415 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L4__bin.3 97.754329 1.669758813 174 1820571 37.56 18318 ERS16282046 ERR11865415 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L4__bin.6 97.05730673 0.757575758 562 5694159 58.5 14513 ERS16282046 ERR11865415 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__D9__bin.6 WalshL_xxxx__D9__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E helleri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L5__bin.3 50.24407265 0.925925926 304 785388 38.74 2659 ERS16282047 ERR11865416 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__L5__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L5__bin.4 98.49056604 0.849056604 97 2300403 35.38 50081 ERS16282047 ERR11865416 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L5__bin.2 76.24426326 0.974025974 360 1370735 38.67 4499 ERS16282047 ERR11865416 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L6__bin.2 96.98113208 0.377358491 338 2218649 35.19 10512 ERS16282048 ERR11865417 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L6__bin.1 57.24163028 0 20 930760 39.47 83496 ERS16282048 ERR11865417 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L6__bin.6 81.52056277 0 142 1475828 36 17624 ERS16282048 ERR11865417 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L6__bin.4 57.75862069 0 472 1326774 59.16 2865 ERS16282048 ERR11865417 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 WalshL_xxxx__L6__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L7__bin.3 97.88679245 1.132075472 239 2411970 34.89 19782 ERS16282049 ERR11865418 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L7__bin.5 79.07569141 0.846069869 56 1272204 39.74 36876 ERS16282049 ERR11865418 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L7__bin.4 97.41915423 0.746268657 135 2478931 58.68 28482 ERS16282049 ERR11865418 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L7__bin.6 55.84415584 0.324675325 105 1020512 37.04 12197 ERS16282049 ERR11865418 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L8__bin.6 99.50248756 3.747392072 253 3046991 53.96 18995 ERS16282050 ERR11865419 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L8__bin.5 99.62264151 0.754716981 61 2227073 35.16 53510 ERS16282050 ERR11865419 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L8__bin.1 60.00727802 0.145560408 27 974271 39.91 59177 ERS16282050 ERR11865419 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L8__bin.2 92.039801 2.628524046 229 2321820 59.11 14285 ERS16282050 ERR11865419 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L8__bin.3 90.17857143 0.216450216 123 1469388 36.59 19822 ERS16282050 ERR11865419 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L9__bin.3 100 0 53 2758187 54.04 85498 ERS16282051 ERR11865420 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L9__bin.1 99.01886792 2.79245283 148 2434283 34.91 37115 ERS16282051 ERR11865420 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L9__bin.5 95.37845706 0.862965273 169 1599793 39.47 13281 ERS16282051 ERR11865420 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L9__bin.2 95.52238806 0.248756219 55 2171773 59.18 61534 ERS16282051 ERR11865420 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__L9__bin.4 96.67207792 2.272727273 153 1665519 36.71 15712 ERS16282051 ERR11865420 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__M1__bin.2 100 0 40 2234721 35.07 92296 ERS16282055 ERR11865424 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__M1__bin.1 98.41269841 0 204 1705499 37.97 12804 ERS16282055 ERR11865424 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__M10__bin.2 68.30188679 0.188679245 32 1501488 35.34 130697 ERS16282052 ERR11865421 Australia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__M11__bin.3 61.74242424 0.568181818 25 1385267 35.17 92219 ERS16282053 ERR11865422 Australia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__M12__bin.1 91.69811321 0.943396226 39 1962445 35.27 92297 ERS16282054 ERR11865423 Australia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__M2__bin.2 100 0 60 2237602 35.15 68370 ERS16282056 ERR11865425 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__M2__bin.1 78.49025974 0 94 1297007 36.24 22525 ERS16282056 ERR11865425 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__M3__bin.4 55.09433962 0 21 1046565 35.29 116563 ERS16282057 ERR11865426 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__M3__bin.1 58.62068966 0 68 939945 35.79 22371 ERS16282057 ERR11865426 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__M4__bin.3 89.81132075 0.377358491 55 1914193 35.27 54469 ERS16282058 ERR11865427 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__M4__bin.2 96.99675325 0.12987013 151 1782811 36.52 18582 ERS16282058 ERR11865427 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__M5__bin.6 51.69811321 0 16 951634 35.37 116564 ERS16282059 ERR11865428 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__M5__bin.3 77.94361526 0 43 2283362 54.3 84042 ERS16282059 ERR11865428 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__M5__bin.5 57.46753247 0.649350649 80 1046509 37.09 19380 ERS16282059 ERR11865428 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__M6__bin.2 100 0.754716981 61 2256001 35.03 72726 ERS16282060 ERR11865429 India PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__M7__bin.1 76.60377358 0 28 1575254 35.29 78642 ERS16282061 ERR11865430 India PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__M8__bin.1 100 0.754716981 62 2257161 35.04 70142 ERS16282062 ERR11865431 India PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__M9__bin.1 77.35849057 0 41 1561543 35.29 71761 ERS16282063 ERR11865432 India PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__N1__bin.2 57.9245283 0 20 1146687 35.2 83749 ERS16282067 ERR11865436 Australia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__N10__bin.2 78.89446412 0.340909091 535 1874367 35.79 3898 ERS16282064 ERR11865433 India PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 WalshL_xxxx__N10__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__N10__bin.7 53.2514881 0.052083333 455 1416041 42.39 3313 ERS16282064 ERR11865433 India PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__N10__bin.3 86.09151214 0.746268657 429 2104989 53.16 5808 ERS16282064 ERR11865433 India PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. G_514_1B_orientalis_assembly WalshL_xxxx__P1__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__N10__bin.5 76.40306122 0 116 1332433 36.97 18807 ERS16282064 ERR11865433 India PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__N11__bin.2 55.41125541 0.081168831 80 908866 35.72 19623 ERS16282065 ERR11865434 India PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__N12__bin.1 90.87631394 3.516414141 523 2384302 34.71 5528 ERS16282066 ERR11865435 India PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 WalshL_xxxx__N12__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__N12__bin.4 96.99675325 0 155 1778767 36.45 18659 ERS16282066 ERR11865435 India PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__N2__bin.2 99.02597403 0.649350649 113 1939961 37.47 35840 ERS16282068 ERR11865437 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__N2__bin.5 90.39769213 1.428325462 830 4835171 58.64 8006 ERS16282068 ERR11865437 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__D9__bin.6 WalshL_xxxx__D9__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E helleri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__N3__bin.3 77.5862069 0 321 2069167 35.02 9280 ERS16282069 ERR11865438 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MASTER_WP4_UNINA_2__O-26.1__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__N3__bin.4 73.81132075 0.70685553 98 1603918 35.74 24091 ERS16282069 ERR11865438 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__N4__bin.7 69.62382445 0 116 1523767 35.22 20004 ERS16282070 ERR11865439 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MASTER_WP4_UNINA_2__O-26.1__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__N4__bin.2 71.93152769 1.226415094 132 1644441 35.47 20090 ERS16282070 ERR11865439 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__N4__bin.4 72.72727273 0 51 1254835 38.27 51169 ERS16282070 ERR11865439 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__N4__bin.1 94.18263555 0.425685426 667 5317119 58.69 10121 ERS16282070 ERR11865439 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__D9__bin.6 WalshL_xxxx__D9__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E helleri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__N5__bin.3 76.49425287 0 276 2051855 34.85 10519 ERS16282071 ERR11865440 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MASTER_WP4_UNINA_2__O-26.1__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__N5__bin.1 65.89531345 0.506003431 86 1476126 35.76 31210 ERS16282071 ERR11865440 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__N5__bin.2 79.87012987 0.216450216 103 1396603 37.25 22712 ERS16282071 ERR11865440 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__N7__bin.3 62.41912342 0.757575758 117 1413563 35.26 22480 ERS16282073 ERR11865442 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__N7__bin.4 98.41269841 0 131 1650422 37.86 21716 ERS16282073 ERR11865442 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__N8__bin.2 81.13207547 0.691823899 41 1910822 35.12 104991 ERS16282074 ERR11865443 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__N8__bin.3 100 0 107 1767942 37.73 32660 ERS16282074 ERR11865443 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__N9__bin.2 69.62264151 0 27 1485404 35.22 97319 ERS16282075 ERR11865444 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__N9__bin.3 100 0 75 1749809 37.71 46779 ERS16282075 ERR11865444 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O1__bin.1 90.30017921 1.61271809 456 2156192 35.02 5811 ERS16282079 ERR11865448 India PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 WalshL_xxxx__O1__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O1__bin.2 96.99675325 0.162337662 163 1763565 36.21 15205 ERS16282079 ERR11865448 India PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O10__bin.9 57.24163028 0 18 946244 39.42 92557 ERS16282076 ERR11865445 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O10__bin.3 65.50324675 0 74 1110479 35.97 25280 ERS16282076 ERR11865445 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O11__bin.6 99.50248756 0 72 2457916 53.08 50419 ERS16282077 ERR11865446 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. G_514_1B_orientalis_assembly WalshL_xxxx__P1__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O11__bin.3 100 0 36 2225617 35.08 92295 ERS16282077 ERR11865446 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O11__bin.2 62.44541485 0.145560408 27 1019132 39.52 65396 ERS16282077 ERR11865446 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O11__bin.5 59.41558442 0 94 1114512 37.31 15625 ERS16282077 ERR11865446 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O12__bin.4 99.62264151 4.528301887 60 2354132 35.03 69964 ERS16282078 ERR11865447 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O12__bin.3 96.97962154 0.145560408 61 1597600 39.37 42572 ERS16282078 ERR11865447 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O12__bin.5 94.52736318 0 43 2362544 53.06 84053 ERS16282078 ERR11865447 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. G_514_1B_orientalis_assembly WalshL_xxxx__P1__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O12__bin.1 67.24137931 0 114 1266427 36.09 17268 ERS16282078 ERR11865447 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O2__bin.3 100 0.566037736 77 2545425 35.36 64468 ERS16282080 ERR11865449 France PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O2__bin.1 55.51948052 0 93 1160410 37.24 18347 ERS16282080 ERR11865449 France PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O3__bin.7 60.95081641 1.499118166 347 1027497 38.32 3259 ERS16282081 ERR11865450 France PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__O3__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O3__bin.2 80 0.188679245 52 1889255 35.62 71734 ERS16282081 ERR11865450 France PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O3__bin.4 95.42910448 0.995024876 328 2471498 58.34 10789 ERS16282081 ERR11865450 France PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O3__bin.6 87.90584416 0.649350649 107 1685327 36.58 20083 ERS16282081 ERR11865450 France PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O4__bin.2 50.79365079 0 38 953317 38 42412 ERS16282082 ERR11865451 France PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O4__bin.5 77.5773332 3.773584906 561 1939181 39.54 3912 ERS16282082 ERR11865451 France PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746866__bin.6 WalshL_xxxx__O4__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O4__bin.3 90.94339623 0.566037736 52 2140773 35.61 78206 ERS16282082 ERR11865451 France PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O4__bin.10 96.76616915 0.248756219 93 2397917 58.58 39066 ERS16282082 ERR11865451 France PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O4__bin.4 71.02272727 0 84 1354185 36.73 20818 ERS16282082 ERR11865451 France PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O5__bin.3 95.76719577 0 103 1630262 37.86 26534 ERS16282083 ERR11865452 France PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O5__bin.5 100 0.943396226 69 2498725 35.44 64468 ERS16282083 ERR11865452 France PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O5__bin.4 97.26368159 0.248756219 92 2218382 59.14 37806 ERS16282083 ERR11865452 France PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O5__bin.2 98.29545455 0.649350649 122 1904488 36.33 23858 ERS16282083 ERR11865452 France PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O6__bin.3 80.48589342 1.724137931 278 1949121 35.15 10025 ERS16282084 ERR11865453 Russia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MASTER_WP4_UNINA_2__O-26.1__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O6__bin.6 96.44917833 0.600343053 133 2241473 35.41 26742 ERS16282084 ERR11865453 Russia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O6__bin.1 88.35596222 0.346320346 203 1653762 37.7 11626 ERS16282084 ERR11865453 Russia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O6__bin.5 54.31034483 0 72 907312 35.76 20083 ERS16282084 ERR11865453 Russia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O7__bin.4 89.20327992 2.588383838 329 2143235 34.79 8741 ERS16282085 ERR11865454 Russia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MASTER_WP4_UNINA_2__O-26.1__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O7__bin.5 67.38244514 1.724137931 128 1499798 35.74 20046 ERS16282085 ERR11865454 Russia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O7__bin.1 80.33072917 0.416666667 387 1809961 41.87 5417 ERS16282085 ERR11865454 Russia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 WalshL_xxxx__O7__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O7__bin.3 83.26938213 0.211038961 193 1509814 37.48 10233 ERS16282085 ERR11865454 Russia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O8__bin.3 88.46616828 2.083333333 476 2231711 34.86 5707 ERS16282086 ERR11865455 Russia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MASTER_WP4_UNINA_2__O-26.1__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O8__bin.2 78.50271123 1.525157233 133 1719559 35.61 20328 ERS16282086 ERR11865455 Russia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O8__bin.9 58.10157377 0.15625 475 1521959 42.17 3247 ERS16282086 ERR11865455 Russia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 WalshL_xxxx__O8__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O8__bin.5 62.06896552 0 77 975987 35.83 18694 ERS16282086 ERR11865455 Russia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O9__bin.5 77.06896552 2.586206897 296 1852533 35.11 7941 ERS16282087 ERR11865456 Russia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MASTER_WP4_UNINA_2__O-26.1__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O9__bin.7 63.92450064 0 92 1327134 35.8 21393 ERS16282087 ERR11865456 Russia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__O9__bin.9 59.2039801 0 23 1279933 54.3 95029 ERS16282087 ERR11865456 Russia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P1__bin.1 100 0 55 2553780 52.91 68944 ERS16282091 ERR11865460 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. G_514_1B_orientalis_assembly WalshL_xxxx__P1__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P1__bin.4 100 0 37 2232610 35.07 92295 ERS16282091 ERR11865460 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P1__bin.3 98.21688501 0.145560408 85 1624889 39.38 32537 ERS16282091 ERR11865460 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P1__bin.2 70.0487013 0 105 1217720 36.02 19277 ERS16282091 ERR11865460 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P10__bin.6 99.62264151 0.691823899 212 2336782 35.11 20137 ERS16282088 ERR11865457 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P10__bin.2 98.72634643 0.254730713 135 1659270 39.34 18011 ERS16282088 ERR11865457 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P10__bin.4 96.76616915 0.248756219 105 2288869 59.1 36584 ERS16282088 ERR11865457 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P10__bin.7 60.34482759 0 67 1012988 35.64 25639 ERS16282088 ERR11865457 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P10__bin.5 68.96551724 0 111 2209092 53.19 32012 ERS16282088 ERR11865457 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. G_514_1B_orientalis_assembly WalshL_xxxx__P1__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P11__bin.5 62.5 0.378787879 65 1563843 34.92 39009 ERS16282089 ERR11865458 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P11__bin.9 97.87897692 1.215429403 165 1667927 39.35 17272 ERS16282089 ERR11865458 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P11__bin.4 95.77114428 0.746268657 72 2196863 59.24 61543 ERS16282089 ERR11865458 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P11__bin.1 86.56716418 0 82 2170191 53.39 34397 ERS16282089 ERR11865458 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. G_514_1B_orientalis_assembly WalshL_xxxx__P1__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P11__bin.6 63.31168831 0 85 1162566 36.95 20083 ERS16282089 ERR11865458 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P12__bin.2 54.1509434 0 19 1087960 35.34 173316 ERS16282090 ERR11865459 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P12__bin.6 99.89082969 0.145560408 70 1711814 39.22 39847 ERS16282090 ERR11865459 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P12__bin.1 98.29545455 0 190 1771937 36.69 13374 ERS16282090 ERR11865459 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P12__bin.3 75.47345749 0.916118333 525 1904069 53.24 3995 ERS16282090 ERR11865459 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. G_514_1B_orientalis_assembly WalshL_xxxx__P1__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P2__bin.3 65.54336468 1.724137931 413 1673846 35.21 4836 ERS16282092 ERR11865461 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 WalshL_xxxx__B6__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P2__bin.2 60.52631579 1.754385965 313 1020824 38.36 3343 ERS16282092 ERR11865461 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P2__bin.1 87.33982552 1.949685535 218 1891947 35.81 15165 ERS16282092 ERR11865461 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P2__bin.4 88.96743408 0.757575758 271 1674110 37.78 8145 ERS16282092 ERR11865461 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P3__bin.3 82.79533319 0.529100529 366 1396690 38.08 4712 ERS16282093 ERR11865462 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P3__bin.2 55.8490566 0 28 1164963 35.78 66141 ERS16282093 ERR11865462 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P3__bin.1 69.96753247 0 91 1334874 38.56 22655 ERS16282093 ERR11865462 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P4__bin.7 99.62686567 0 49 2651646 54.16 86148 ERS16282094 ERR11865463 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P4__bin.3 96.82539683 1.058201058 200 1612616 38.05 11610 ERS16282094 ERR11865463 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P4__bin.5 52.03761755 3.448275862 257 1783190 34.93 12479 ERS16282094 ERR11865463 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__P4__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P4__bin.1 92.15004523 0.746268657 250 2305531 58.91 12629 ERS16282094 ERR11865463 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P5__bin.3 99.47089947 0 95 1714152 37.81 34896 ERS16282095 ERR11865464 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P5__bin.8 100 0.377358491 77 2588710 35.4 64468 ERS16282095 ERR11865464 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P5__bin.4 98.00995025 0.746268657 207 2385843 58.85 16803 ERS16282095 ERR11865464 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P5__bin.2 74.00681456 2.931916568 139 1464989 38.26 15699 ERS16282095 ERR11865464 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P5__bin.10 67.1641791 0 21 1680866 53.92 112725 ERS16282095 ERR11865464 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P6__bin.3 91.10750361 1.748330075 409 2212763 35.08 6858 ERS16282096 ERR11865465 Croatia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 WalshL_xxxx__P6__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P6__bin.1 91.72335601 1.322751323 303 1503092 38.11 5712 ERS16282096 ERR11865465 Croatia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P7__bin.1 99.24528302 0.754716981 34 2199690 35.08 92295 ERS16282097 ERR11865466 Croatia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P7__bin.2 85.87301587 0.048100048 371 1497454 38.21 4766 ERS16282097 ERR11865466 Croatia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P8__bin.2 100 0 56 2229046 35.13 68370 ERS16282098 ERR11865467 Croatia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P8__bin.4 96.82539683 0.264550265 269 1641655 38.1 7969 ERS16282098 ERR11865467 Croatia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P8__bin.1 83.05194805 0 101 1473427 38.33 23693 ERS16282098 ERR11865467 Croatia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P9__bin.2 99.24528302 0.377358491 54 2209391 35.08 77818 ERS16282099 ERR11865468 Croatia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__P9__bin.1 98.94179894 0 199 1720616 37.92 13128 ERS16282099 ERR11865468 Croatia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q1__bin.10 99.62264151 0.566037736 41 2320389 35.09 107167 ERS16282103 ERR11865472 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q1__bin.6 66.37554585 0.800582242 31 1017460 39.67 43031 ERS16282103 ERR11865472 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q1__bin.9 98.22761194 0 125 2638992 52.7 34026 ERS16282103 ERR11865472 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. G_514_1B_orientalis_assembly WalshL_xxxx__P1__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q1__bin.11 60.34482759 0 80 1058787 35.49 22282 ERS16282103 ERR11865472 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q1__bin.4 53.39966833 0 27 1124397 59 61647 ERS16282103 ERR11865472 Bulgaria PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q10__bin.5 97.61006289 3.238993711 400 2141303 36.07 6721 ERS16282100 ERR11865469 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__Q12__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q10__bin.3 58.7405303 0.078125 492 1572410 42.12 3442 ERS16282100 ERR11865469 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 WalshL_xxxx__Q10__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q10__bin.4 53.57142857 0.324675325 72 1005027 38.92 19044 ERS16282100 ERR11865469 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q10__bin.2 54.31034483 0 77 889856 35.89 22416 ERS16282100 ERR11865469 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 MAG_357 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q11__bin.1 87.18436868 3.628930818 499 2057637 35.41 4904 ERS16282101 ERR11865470 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__Q11__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q11__bin.2 94.6875 0.625 248 2249750 41.97 12381 ERS16282101 ERR11865470 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q11__bin.5 63.44827586 0.862068966 80 1028255 36.55 26232 ERS16282101 ERR11865470 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 MAG_357 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q12__bin.2 96.66666667 0.880503145 314 2118229 35.58 8563 ERS16282102 ERR11865471 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__Q12__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q12__bin.4 57.79220779 0.081168831 99 1085783 38.81 18408 ERS16282102 ERR11865471 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q2__bin.2 98.86792453 0.377358491 38 2141690 35.09 92295 ERS16282104 ERR11865473 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q2__bin.3 97.78020378 0.303250849 108 1625081 39.38 21663 ERS16282104 ERR11865473 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q2__bin.1 68.85822511 0 118 1235770 36.67 16775 ERS16282104 ERR11865473 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q3__bin.7 100 0.377358491 40 2242283 35.05 92295 ERS16282105 ERR11865474 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q3__bin.3 51.72413793 0 117 1103438 35.6 15051 ERS16282105 ERR11865474 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__L6__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q3__bin.4 91.64402174 0.733695652 219 5481254 60.29 38092 ERS16282105 ERR11865474 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MASTER_WP4_TEAGASC_1__TGS09-25__bin.2 WalshL_xxxx__Q3__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E azotoformans A kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q4__bin.4 100 1.492537313 77 2757395 54.21 62272 ERS16282106 ERR11865475 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q4__bin.1 98.86792453 0 36 2123423 35.09 92295 ERS16282106 ERR11865475 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q4__bin.3 79.94123082 1.554897068 351 1286032 39.69 4114 ERS16282106 ERR11865475 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. Wy2_bin.circ.1 WalshL_xxxx__Q4__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q4__bin.2 93.14616434 0.995024876 293 2450510 58.6 12432 ERS16282106 ERR11865475 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q4__bin.5 96.99675325 1.688311688 162 1855762 36.28 19463 ERS16282106 ERR11865475 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q5__bin.4 100 2.487562189 45 2983756 54.03 90005 ERS16282107 ERR11865476 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q5__bin.2 100 0.754716981 44 2241055 35.09 78386 ERS16282107 ERR11865476 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q5__bin.1 97.51243781 0.248756219 91 2455935 58.58 47389 ERS16282107 ERR11865476 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q5__bin.6 97.6461039 0 176 1838019 36.28 16220 ERS16282107 ERR11865476 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q5__bin.3 55.78463439 0.417244802 996 2762877 60.65 2850 ERS16282107 ERR11865476 Taiwan PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MASTER_WP4_TEAGASC_1__TGS09-25__bin.2 WalshL_xxxx__Q3__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E azotoformans A kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q6__bin.1 98.86792453 0.566037736 45 2387888 35.06 92297 ERS16282108 ERR11865477 Australia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q7__bin.1 98.86792453 0.566037736 41 2369138 35.06 106167 ERS16282109 ERR11865478 Australia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q8__bin.1 98.86792453 0.691823899 46 2321273 35.06 104991 ERS16282110 ERR11865479 Australia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__Q9__bin.1 98.86792453 0.188679245 39 2321648 35.04 104991 ERS16282111 ERR11865480 Australia PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R1__bin.4 81.02292769 1.164021164 355 1265595 38.28 4035 ERS16282115 ERR11865484 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__R1__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R1__bin.1 96.35416667 0 168 2301391 41.88 22878 ERS16282115 ERR11865484 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R1__bin.5 95.67099567 0.834879406 141 1650123 37.91 21361 ERS16282115 ERR11865484 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R10__bin.1 91.84151819 1.111111111 226 2228109 34.91 15175 ERS16282112 ERR11865481 Sweden PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 WalshL_xxxx__B6__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R10__bin.4 65.54311219 0.455283203 85 1359458 35.83 31734 ERS16282112 ERR11865481 Sweden PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R10__bin.3 65.51724138 0 483 1936596 58.9 4702 ERS16282112 ERR11865481 Sweden PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 WalshL_xxxx__G12__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R11__bin.3 64.34925948 0.408805031 79 1397071 35.68 26433 ERS16282113 ERR11865482 Sweden PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R12__bin.2 69.62382445 1.724137931 373 1757322 34.74 5670 ERS16282114 ERR11865483 Sweden PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 WalshL_xxxx__R12__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R12__bin.1 96.35519836 3.433962264 145 2197644 35.44 25517 ERS16282114 ERR11865483 Sweden PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R12__bin.3 95.27363184 0.746268657 139 2275543 59.04 26448 ERS16282114 ERR11865483 Sweden PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 WalshL_xxxx__G12__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R2__bin.3 58.11350466 0.590259999 384 1049523 38.54 2804 ERS16282116 ERR11865485 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__R2__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R2__bin.2 100 0.377358491 66 2513560 35.46 64468 ERS16282116 ERR11865485 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R3__bin.3 81.57401312 1.410934744 384 1551053 38.28 4639 ERS16282117 ERR11865486 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__R3__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R3__bin.4 74.71698113 0.377358491 53 2008986 35.31 66141 ERS16282117 ERR11865486 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R3__bin.2 69.82758621 0 522 1971685 58.44 4329 ERS16282117 ERR11865486 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R4__bin.1 100 0.705467372 90 1957576 37.72 42546 ERS16282118 ERR11865487 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R4__bin.7 76.60377358 0 41 1756552 35.8 82340 ERS16282118 ERR11865487 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R4__bin.6 98.75 0.416666667 175 2331875 41.89 22037 ERS16282118 ERR11865487 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R4__bin.5 97.26368159 0.746268657 90 2231683 59.12 39336 ERS16282118 ERR11865487 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R4__bin.8 95.12987013 1.124157797 256 2004323 37.4 12477 ERS16282118 ERR11865487 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R4__bin.3 67.33001658 0 26 1626127 54.32 110163 ERS16282118 ERR11865487 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R5__bin.5 98.94179894 1.234567901 61 1832669 37.8 59009 ERS16282119 ERR11865488 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R5__bin.4 70.94339623 0 34 1620041 35.75 67900 ERS16282119 ERR11865488 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R5__bin.6 98.25870647 0.746268657 95 2378708 58.84 41123 ERS16282119 ERR11865488 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R5__bin.1 57.66931472 0 36 1272425 54.22 64407 ERS16282119 ERR11865488 United Kingdom PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R6__bin.2 79.24528302 0.188679245 29 1729532 35.23 104991 ERS16282120 ERR11865489 Spain PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R7__bin.2 53.03030303 0 21 1372688 34.83 92297 ERS16282121 ERR11865490 Spain PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R8__bin.1 77.65151515 0.189393939 26 1870122 34.95 141420 ERS16282122 ERR11865491 Spain PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R8__bin.2 91.36441449 2.296314128 452 2801267 54 8129 ERS16282122 ERR11865491 Spain PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R9__bin.6 62.83018868 0 25 1318955 35.31 130538 ERS16282123 ERR11865492 Spain PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R9__bin.2 70.14925373 0 32 1982539 54.1 101997 ERS16282123 ERR11865492 Spain PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__R9__bin.5 73.61519205 1.461038961 402 1339050 38.51 3762 ERS16282123 ERR11865492 Spain PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__R9__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S1__bin.2 84.53406869 2.05537518 411 2150596 34.72 7139 ERS16282127 ERR11865496 Sweden PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 WalshL_xxxx__S1__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S1__bin.4 87.18848937 0.746268657 329 2182522 59.04 7741 ERS16282127 ERR11865496 Sweden PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 WalshL_xxxx__G12__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S10__bin.1 99.24528302 1.320754717 103 2336004 35.13 35264 ERS16282124 ERR11865493 South Africa PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S10__bin.2 96.99675325 0 152 1749350 36.53 17636 ERS16282124 ERR11865493 South Africa PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S11__bin.1 99.62264151 0.188679245 51 2392132 35.08 88389 ERS16282125 ERR11865494 South Africa PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S11__bin.2 93.38624339 0 296 1504043 38.3 6661 ERS16282125 ERR11865494 South Africa PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S11__bin.3 98.29545455 0.730519481 205 1863778 36.34 13965 ERS16282125 ERR11865494 South Africa PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S12__bin.4 99.62264151 0.188679245 51 2428814 35.07 104991 ERS16282126 ERR11865495 South Africa PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S12__bin.3 100 0.176366843 137 1858540 37.79 22264 ERS16282126 ERR11865495 South Africa PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S12__bin.1 98.66293532 0.124378109 85 2629109 54.29 46992 ERS16282126 ERR11865495 South Africa PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S12__bin.2 97.6461039 0.649350649 163 1843325 36.25 18121 ERS16282126 ERR11865495 South Africa PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S2__bin.3 87.69631802 3.472222222 298 1899728 34.99 8275 ERS16282128 ERR11865497 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S2__bin.1 63.15789474 0 237 945487 38.39 4369 ERS16282128 ERR11865497 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S2__bin.4 78.24451411 0.862068966 279 2012108 35.61 10242 ERS16282128 ERR11865497 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S3__bin.1 84.42461904 2.998737374 338 1956271 34.69 7523 ERS16282129 ERR11865498 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 WalshL_xxxx__S3__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S3__bin.2 75.86206897 0 278 1996682 35.5 9071 ERS16282129 ERR11865498 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__U-2-10__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S4__bin.3 94.54952753 0.378787879 109 2135094 35.07 31638 ERS16282130 ERR11865499 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S4__bin.1 98.94179894 0 118 1595034 37.99 19494 ERS16282130 ERR11865499 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S4__bin.2 68.10344828 0 405 2071743 35.47 6228 ERS16282130 ERR11865499 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__U-2-10__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S5__bin.3 90.37193785 1.515151515 189 2036360 34.89 14194 ERS16282131 ERR11865500 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S5__bin.2 95.41446208 0 95 1537247 37.92 22565 ERS16282131 ERR11865500 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S5__bin.1 55.17241379 0 202 1881719 34.97 12931 ERS16282131 ERR11865500 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__U-2-10__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S6__bin.2 99.62264151 0.691823899 134 2425035 35.03 33909 ERS16282132 ERR11865501 France PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S6__bin.1 98.46875 0 116 2296995 41.85 36604 ERS16282132 ERR11865501 France PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S6__bin.3 84.3557795 2.077922078 368 1946176 37.66 7106 ERS16282132 ERR11865501 France PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S7__bin.3 99.62264151 1.06918239 66 2302799 35.08 74865 ERS16282133 ERR11865502 France PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S7__bin.5 94.25 0.625 104 2235380 41.86 36776 ERS16282133 ERR11865502 France PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S7__bin.1 97.72727273 2.272727273 137 2031697 37.38 35128 ERS16282133 ERR11865502 France PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S8__bin.4 99.62264151 0.943396226 55 2403630 35.04 92299 ERS16282134 ERR11865503 France PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S8__bin.2 99.375 0 115 2249410 41.95 29925 ERS16282134 ERR11865503 France PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S8__bin.3 93.41794569 0.12987013 205 1844182 37.57 14582 ERS16282134 ERR11865503 France PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S9__bin.5 99.62264151 1.06918239 53 2393763 35.05 92297 ERS16282135 ERR11865504 France PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S9__bin.2 93.75 0 103 2261647 41.86 37849 ERS16282135 ERR11865504 France PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__S9__bin.3 82.79220779 1.298701299 101 1509434 38.3 29089 ERS16282135 ERR11865504 France PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__T1__bin.6 99.62264151 1.446540881 52 2472277 35.01 104991 ERS16282139 ERR11865508 South Africa PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__T1__bin.1 98.14814815 0.705467372 148 1798534 38 17466 ERS16282139 ERR11865508 South Africa PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__T1__bin.3 51.63813459 0 133 1080677 37.46 10402 ERS16282139 ERR11865508 South Africa PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__T1__bin.4 62.61589778 0 63 1856386 54.81 55128 ERS16282139 ERR11865508 South Africa PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__T2__bin.7 98.75621891 1.243781095 187 2384496 58.77 20605 ERS16282140 ERR11865509 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__T2__bin.2 93.33333333 1.354166667 265 2280947 41.91 13695 ERS16282140 ERR11865509 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__T2__bin.6 97.83549784 0.417439703 119 1682771 37.78 22854 ERS16282140 ERR11865509 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__T2__bin.4 55.3 0.7 2337 7129751 33.49 3284 ERS16282140 ERR11865509 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MASTER_WP4_UNINA_2__F-22__bin.7 MASTER_WP4_UNINA_2__F-22__bin.7 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kazachstania Kazachstania unispora kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__T3__bin.2 71.92982456 0 50 1229918 37.73 49843 ERS16282141 ERR11865510 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__T3__bin.5 98.86792453 2.075471698 173 2763869 35.3 33263 ERS16282141 ERR11865510 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__T3__bin.7 75.1155754 0.33203125 478 1936015 42.17 4800 ERS16282141 ERR11865510 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__T3__bin.4 95.92661692 1.343283582 314 2543957 58.27 11974 ERS16282141 ERR11865510 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__T3__bin.9 61.25541126 0.118063754 86 1126061 38.65 24228 ERS16282141 ERR11865510 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__T4__bin.2 100 0 85 1805620 37.76 42412 ERS16282142 ERR11865511 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__T4__bin.6 99.24528302 1.006289308 184 2703169 35.28 26558 ERS16282142 ERR11865511 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__T4__bin.5 84.2890625 2.152777778 372 2082126 41.97 6776 ERS16282142 ERR11865511 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__T4__bin.1 96.37890095 1.658374793 252 2485411 58.47 14267 ERS16282142 ERR11865511 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__T4__bin.4 58.20180617 0.779220779 102 1023842 38.81 13815 ERS16282142 ERR11865511 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__T5__bin.4 98.75621891 0.746268657 146 2434474 58.7 28054 ERS16282143 ERR11865512 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__T5__bin.1 100 0 76 1737965 37.83 46732 ERS16282143 ERR11865512 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__T5__bin.5 99.24528302 4.414688578 240 3368446 34.93 32268 ERS16282143 ERR11865512 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__T5__bin.6 93.4375 1.009114583 216 2267081 41.93 15541 ERS16282143 ERR11865512 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__T5__bin.7 95.59720582 1.418521954 203 1729778 37.53 13426 ERS16282143 ERR11865512 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__U-2-10__bin.1 100 0.377358491 75 2597281 35.32 108048 ERS16282155 ERR11865524 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__U-2-10__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__U-2-11__bin.3 88.30188679 0.188679245 49 1931605 35.17 79907 ERS16282156 ERR11865525 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__U-2-11__bin.1 79.27630018 0.475004448 593 2250484 39.46 4248 ERS16282156 ERR11865525 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MagliuloR_2024__SRR28235359__bin.3 WalshL_xxxx__U-2-12__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__U-2-12__bin.2 81.50943396 0.188679245 43 1844497 35.06 83741 ERS16282157 ERR11865526 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__U-2-12__bin.3 98.53881279 0.176125245 88 3076197 38.74 56835 ERS16282157 ERR11865526 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MagliuloR_2024__SRR28235359__bin.3 WalshL_xxxx__U-2-12__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__U-2-7__bin.1 99.05660377 0.754716981 141 2502855 35.35 32256 ERS16282158 ERR11865527 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__U-2-10__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__U-2-8__bin.1 100 0.377358491 55 2441868 35.47 108056 ERS16282159 ERR11865528 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__U-2-10__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__U-2-8__bin.2 97.44268078 0.793650794 223 1844445 39.18 12860 ERS16282159 ERR11865528 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__U-2-9__bin.1 99.62264151 0.377358491 86 2599249 35.3 86247 ERS16282160 ERR11865529 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__U-2-10__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__U-2-9__bin.3 52.71448121 0.561797753 257 834800 39.7 3449 ERS16282160 ERR11865529 Greece PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 WalshL_xxxx__U-2-9__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc citreum kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__U2__bin.1 79.31034483 0 227 4239970 60.44 31017 ERS16282161 ERR11865530 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. DeFilippisF_xxxx__DF_28__bin.4 WalshL_xxxx__U2__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E proteolytica kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V1__bin.3 99.24528302 0.188679245 56 2286092 35.02 75478 ERS16282171 ERR11865540 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V1__bin.1 63.20786499 0.529100529 353 1174284 38.04 3690 ERS16282171 ERR11865540 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__V1__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V1__bin.2 96.99419569 0.497512438 168 2823359 54 35056 ERS16282171 ERR11865540 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V10__bin.2 99.24528302 0.188679245 59 2290300 35.04 75626 ERS16282168 ERR11865537 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V10__bin.1 98.94179894 0.264550265 130 1785574 39.27 18690 ERS16282168 ERR11865537 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V10__bin.3 96.41509434 0.377358491 168 2243980 38.88 21678 ERS16282168 ERR11865537 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__V9__bin.2 WalshL_xxxx__V9__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V11__bin.2 97.39892183 0.503144654 355 2247768 35.1 9110 ERS16282169 ERR11865538 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V11__bin.1 99.375 0 99 2241727 41.87 33669 ERS16282169 ERR11865538 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V11__bin.3 99.02597403 1.252319109 127 1983062 37.46 23540 ERS16282169 ERR11865538 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V12__bin.1 96.56603774 1.006289308 210 2385785 34.9 19660 ERS16282170 ERR11865539 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V2__bin.1 99.24528302 0.628930818 58 2353559 34.91 75478 ERS16282172 ERR11865541 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V2__bin.3 97.61904762 0.529100529 220 1634202 38.1 11409 ERS16282172 ERR11865541 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V2__bin.2 77.88090948 0.497512438 557 2223648 54.29 4496 ERS16282172 ERR11865541 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V3__bin.1 69.15633423 1.446540881 503 1627016 35.86 3519 ERS16282173 ERR11865542 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 WalshL_xxxx__V3__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V3__bin.3 96.89497717 0.593607306 394 2867597 39.21 9978 ERS16282173 ERR11865542 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MagliuloR_2024__SRR28235359__bin.3 WalshL_xxxx__U-2-12__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V4__bin.1 96.60377358 0.691823899 335 2305204 35.21 10238 ERS16282174 ERR11865543 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V4__bin.4 51.86562296 0 34 1514240 39.28 74381 ERS16282174 ERR11865543 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MagliuloR_2024__SRR28235359__bin.3 WalshL_xxxx__U-2-12__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V5__bin.1 99.24528302 0.188679245 56 2286613 35.03 69684 ERS16282175 ERR11865544 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V5__bin.2 97.70723104 0.264550265 278 1714649 39.32 8384 ERS16282175 ERR11865544 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V6__bin.3 99.24528302 0.188679245 59 2277117 35.05 75626 ERS16282176 ERR11865545 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V6__bin.1 100 0 103 1812500 39.19 29522 ERS16282176 ERR11865545 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V7__bin.1 99.24528302 1.006289308 113 2404783 34.89 37948 ERS16282177 ERR11865546 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V7__bin.3 95.78125 0 226 2227832 41.95 14355 ERS16282177 ERR11865546 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V7__bin.4 86.49326146 1.320754717 443 2047479 39.27 5584 ERS16282177 ERR11865546 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__V9__bin.2 WalshL_xxxx__V9__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V7__bin.2 99.02597403 1.252319109 108 2033362 37.4 41768 ERS16282177 ERR11865546 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V8__bin.4 99.24528302 0.566037736 92 2333990 35.09 44587 ERS16282178 ERR11865547 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V8__bin.3 94.56279164 0.880503145 255 2016832 39.44 11885 ERS16282178 ERR11865547 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__V9__bin.2 WalshL_xxxx__V9__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V8__bin.2 94.91883117 2.031539889 330 2034297 37.63 8645 ERS16282178 ERR11865547 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V9__bin.4 99.24528302 0.628930818 59 2344632 34.92 75626 ERS16282179 ERR11865548 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V9__bin.1 97.44268078 0.176366843 232 1744807 39.31 10689 ERS16282179 ERR11865548 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V9__bin.2 97.98742138 0.566037736 110 2236043 39.06 29565 ERS16282179 ERR11865548 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. WalshL_xxxx__V9__bin.2 WalshL_xxxx__V9__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__V9__bin.3 81.12870355 2.019733513 419 1640579 37.98 4613 ERS16282179 ERR11865548 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__V9__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__W10__bin.1 99.24528302 0.188679245 55 2280848 35.03 75478 ERS16282180 ERR11865549 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__W2__bin.2 99.24528302 0.188679245 56 2284970 35.03 75478 ERS16282184 ERR11865553 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__W2__bin.3 99.47089947 0 130 1753502 39.28 20389 ERS16282184 ERR11865553 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__W3__bin.1 99.24528302 0.188679245 105 2336155 35.04 35814 ERS16282185 ERR11865554 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__W3__bin.2 97.72727273 1.252319109 140 2032329 37.51 28684 ERS16282185 ERR11865554 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__W4__bin.2 92.45283019 0.188679245 52 2140066 35 75478 ERS16282186 ERR11865555 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__W4__bin.1 94.67532468 1.382189239 305 1988099 37.51 9332 ERS16282186 ERR11865555 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__W5__bin.2 99.24528302 0.188679245 61 2313189 35.02 75478 ERS16282187 ERR11865556 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__W5__bin.1 93.41350008 1.476102551 309 1732896 39.12 7102 ERS16282187 ERR11865556 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__W6__bin.1 99.24528302 0.188679245 56 2286329 35.03 75478 ERS16282188 ERR11865557 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__W6__bin.2 98.41269841 0 135 1759118 39.32 18806 ERS16282188 ERR11865557 Germany PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__W7__bin.2 99.24528302 0.188679245 61 2278425 35.07 72968 ERS16282189 ERR11865558 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__W8__bin.1 59.09090909 0 45 1436093 34.87 62492 ERS16282190 ERR11865559 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__W8__bin.3 73.50945858 0 53 2180227 39.02 71804 ERS16282190 ERR11865559 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MagliuloR_2024__SRR28235359__bin.3 WalshL_xxxx__U-2-12__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__W9__bin.2 99.93781095 0 178 2977147 53.8 28446 ERS16282191 ERR11865560 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days WalshL_xxxx__W9__bin.1 99.24528302 0.188679245 55 2286185 35.03 75478 ERS16282191 ERR11865560 Ireland PRJEB65292 ERP150416 ENA Walsh LH, Coakley M, Walsh AM, Crispie F, O'Toole PW, Cotter PD. Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways. iScience. 2023 Sep 21;26(10):108004. doi: 10.1016/j.isci.2023.108004. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis kefir kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days GCF_002276885.1_ASM227688v1_genomic 98.94 0.64 116 2463501 43.6 49211 GCF_002276885.1 GCF_002276885.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_002276885.1_ASM227688v1_genomic GCF_002276885.1_ASM227688v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parakefiri kefir grain kefir_grain Animal Dairy milk beverage solid low mixed none 1-2 days GCA_003243815.1_ASM324381v1_genomic 99.79 0 17 14118184 38.77 1468698 GCA_003243815.1 GCA_003243815.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCA_003243815.1_ASM324381v1_genomic GCA_003243815.1_ASM324381v1_genomic Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Spathaspora Candida sake kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months GCF_000298875.1_ASM29887v1_genomic 99.44 0.19 1 1893499 36.68 1893499 GCF_000298875.1 GCF_000298875.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_000298875.1_ASM29887v1_genomic GCF_000298875.1_ASM29887v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc gelidum kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months GCF_001050475.1_ASM105047v1_genomic 99.48 0 1 2590556 36.71 2590556 GCF_001050475.1 GCF_001050475.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001050475.1_ASM105047v1_genomic GCF_001050475.1_ASM105047v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus ginsenosidimutans kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months GCF_001433995.1_ASM143399v1_genomic 99.06 0.94 33 2589595 46.59 292702 GCF_001433995.1 GCF_001433995.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001433995.1_ASM143399v1_genomic GCF_001433995.1_ASM143399v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Secundilactobacillus Secundilactobacillus kimchicus kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months GCF_001435445.1_ASM143544v1_genomic 99.48 2.09 25 2745634 35.12 208708 GCF_001435445.1 GCF_001435445.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001435445.1_ASM143544v1_genomic GCF_001435445.1_ASM143544v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus kimchii kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months GCF_001438805.1_ASM143880v1_genomic 99.48 1.57 65 2696617 35.47 85023 GCF_001438805.1 GCF_001438805.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001438805.1_ASM143880v1_genomic GCF_001438805.1_ASM143880v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus kimchiensis kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months GCF_002310475.1_ASM231047v1_genomic 97.99 0.6 3 2292235 39.74 2217417 GCF_002310475.1 GCF_002310475.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 FontanaF_2023__SRR20746866__bin.6 FontanaF_2023__SRR20746866__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months GCF_003353445.1_ASM335344v1_genomic 99.08 0 7 1658396 43.65 832113 GCF_003353445.1 GCF_003353445.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003353445.1_ASM335344v1_genomic GCF_003353445.1_ASM335344v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella soli kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months GCF_003946265.1_ASM394626v1_genomic 99.38 0.62 63 2693691 47.85 94890 GCF_003946265.1 GCF_003946265.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946265.1_ASM394626v1_genomic GCF_003946265.1_ASM394626v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus yonginensis kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months GCF_007954525.1_ASM795452v1_genomic 99.48 1.05 3 1701333 37.35 1590008 GCF_007954525.1 GCF_007954525.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 CM_UNINA_FFOOD__FFOOD_229__bin.10 GCF_007954525.1_ASM795452v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc carnosum kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months GCF_007954605.1_ASM795460v1_genomic 99.44 0.56 2 1791608 43.32 1781455 GCF_007954605.1 GCF_007954605.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 CM_UNINA_FFOOD__FFOOD_245__bin.2 GCF_007954605.1_ASM795460v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months GCF_008033155.1_ASM803315v1_genomic 98.7 0.31 3 2087401 41.01 2026419 GCF_008033155.1 GCF_008033155.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_008033155.1_ASM803315v1_genomic GCF_008033155.1_ASM803315v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Secundilactobacillus Secundilactobacillus malefermentans kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months GCF_013127755.1_ASM1312775v1_genomic 99.38 0 1 2044083 42.23 2044083 GCF_013127755.1 GCF_013127755.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 CM_UNINA_FFOOD__FFOOD_425__bin.9 GCF_013127755.1_ASM1312775v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months GCF_019656015.1_ASM1965601v1_genomic 99.44 0.11 35 1963716 36.79 126870 GCF_019656015.1 GCF_019656015.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_019656015.1_ASM1965601v1_genomic GCF_019656015.1_ASM1965601v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc inhae A kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months ODFM-BA-A-0050-001_Hanseniaspora_uvarum_CBA6001 60.87 0.43 18 8807786 31.87 1289090 ODFM-BA-A-0050-001 ODFM-BA-A-0050-001 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. SternesPR_2017__Y2D1_A_shotgun__bin.3 ODFM-BA-A-0050-001_Hanseniaspora_uvarum_CBA6001 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycodaceae;Hanseniaspora Hanseniaspora uvarum kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months ODFM-BA-A-0051-001_Pichia_kluyveri_CBA6002 79.5 11.59 22 12399968 28.79 2129560 ODFM-BA-A-0051-001 ODFM-BA-A-0051-001 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. DuR_2020__DRS139334__bin.19 ODFM-BA-A-0051-001_Pichia_kluyveri_CBA6002 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia kluyveri kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months ODFM-BA-A-0052-001_Yarrowia_lipolytica_CBA6003 100 0 35 21322443 48.86 3935323 ODFM-BA-A-0052-001 ODFM-BA-A-0052-001 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0052-001_Yarrowia_lipolytica_CBA6003 ODFM-BA-A-0052-001_Yarrowia_lipolytica_CBA6003 Ascomycota;Saccharomycetes;Saccharomycetales;Dipodascaceae;Yarrowia Yarrowia lipolytica kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 99.46 0 3 2032521 41.13 1975341 ODFM-BA-A-0027-003 ODFM-BA-A-0027-003 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months ODFM-BA-A-0067-003_Leuconostoc_mesenteroides_subsp._mesenteroides_CBA3607 100 0 3 1854316 37.01 1777316 ODFM-BA-A-0067-003 ODFM-BA-A-0067-003 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0067-003_Leuconostoc_mesenteroides_subsp._mesenteroides_CBA3607 ODFM-BA-A-0067-003_Leuconostoc_mesenteroides_subsp._mesenteroides_CBA3607 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides B kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months ODFM-BA-A-0080-002_Microbacterium_sp._CBA3102 98.99 0.51 1 3886103 67.97 3886103 ODFM-BA-A-0080-002 ODFM-BA-A-0080-002 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0080-002_Microbacterium_sp._CBA3102 ODFM-BA-A-0080-002_Microbacterium_sp._CBA3102 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium Microbacterium aurugineum kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months ODFM-BA-A-0086-005_Weissella_koreensis_CBA3615 96.99 0 2 1511813 35.49 1491842 ODFM-BA-A-0086-005 ODFM-BA-A-0086-005 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0086-005_Weissella_koreensis_CBA3615 ODFM-BA-A-0086-005_Weissella_koreensis_CBA3615 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella koreensis kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months ODFM-BA-A-0094-002_Leuconostoc_lactis_WIKIM21 99.44 0.84 22 1761426 43.08 167937 ODFM-BA-A-0094-002 ODFM-BA-A-0094-002 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0094-002_Leuconostoc_lactis_WIKIM21 ODFM-BA-A-0094-002_Leuconostoc_lactis_WIKIM21 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis A kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months ODFM-BA-A-0208-003_Brachybacterium_kimchii_CBA3104 98.25 1.17 2 4348474 71.54 4284788 ODFM-BA-A-0208-003 ODFM-BA-A-0208-003 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0208-003_Brachybacterium_kimchii_CBA3104 ODFM-BA-A-0208-003_Brachybacterium_kimchii_CBA3104 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium kimchii kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months ODFM-BA-A-0217-003_GCF_025908565.1 98.47 0 5 2497125 44.68 1606879 ODFM-BA-A-0217-003 ODFM-BA-A-0217-003 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0217-003_GCF_025908565.1 ODFM-BA-A-0217-003_GCF_025908565.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella fermenti kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months MAG_16 99.25 0.85 70 3846744 67.31 109646 ['SAMEA104430799', 'SAMEA104430800', 'SAMEA104430801', 'SAMEA104430802', 'SAMEA104430803', 'SAMEA104430804', 'SAMEA104430805', 'SAMEA104430806', 'SAMEA104430807', 'SAMEA104430808', 'SAMEA104430809', 'SAMEA104430810', 'SAMEA104430811', 'SAMEA104430812', 'SAMEA104430813', 'SAMEA104430814', 'SAMEA104430815', 'SAMEA104430816', 'SAMEA104430817', 'SAMEA104430818', 'SAMEA104430819', 'SAMEA104430820', 'SAMEA104430821', 'SAMEA104430822', 'SAMEA104430823', 'SAMEA104430824', 'SAMEA104430825', 'SAMEA104430826', 'SAMEA104430827', 'SAMEA104430828', 'SAMEA104430829', 'SAMEA104430830', 'SAMEA104430831', 'SAMEA104430832', 'SAMEA104430833', 'SAMEA104430834', 'SAMEA104430835', 'SAMEA104430836', 'SAMEA104430837', 'SAMEA104430838', 'SAMEA104430839', 'SAMEA104430840', 'SAMEA104430841', 'SAMEA104430842', 'SAMEA104430843', 'SAMEA104430844', 'SAMEA104430845', 'SAMEA104430846', 'SAMEA104430847', 'SAMEA104430848', 'SAMEA104430849', 'SAMEA104430850', 'SAMEA104430851', 'SAMEA104430852', 'SAMEA104430853', 'SAMEA104430854', 'SAMEA104430855', 'SAMEA104430856', 'SAMEA104430857', 'SAMN00623069', 'SAMN00623070', 'SAMN00623071', 'SAMN00623072', 'SAMN00623073', 'SAMN00623074', 'SAMN00623075', 'SAMN00623076', 'SAMN00623077', 'SAMN00623078'] ['ERR2298550', 'ERR2298551', 'ERR2298552', 'ERR2298553', 'ERR2298554', 'ERR2298555', 'ERR2298556', 'ERR2298557', 'ERR2298558', 'ERR2298559', 'ERR2298560', 'ERR2298561', 'ERR2298562', 'ERR2298563', 'ERR2298564', 'ERR2298565', 'ERR2298566', 'ERR2298567', 'ERR2298568', 'ERR2298569', 'ERR2298570', 'ERR2298571', 'ERR2298572', 'ERR2298573', 'ERR2298574', 'ERR2298575', 'ERR2298576', 'ERR2298577', 'ERR2298578', 'ERR2298579', 'ERR2298580', 'ERR2298581', 'ERR2298582', 'ERR2298583', 'ERR2298584', 'ERR2298585', 'ERR2298586', 'ERR2298587', 'ERR2298588', 'ERR2298589', 'ERR2298590', 'ERR2298591', 'ERR2298592', 'ERR2298593', 'ERR2298594', 'ERR2298595', 'ERR2298596', 'ERR2298597', 'ERR2298598', 'ERR2298599', 'ERR2298600', 'ERR2298601', 'ERR2298602', 'ERR2298603', 'ERR2298604', 'ERR2298605', 'ERR2298606', 'ERR2298607', 'ERR2298608', 'SRR256747', 'SRR256748', 'SRR256749', 'SRR256750', 'SRR256751', 'SRR256752', 'SRR256753', 'SRR256754', 'SRR256755', 'SRR256756'] ['Korea', 'China'] ['PRJEB23957', 'PRJNA50815'] ['ERP105740', 'SRP003198'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_16 MAG_16 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Sphingomonas Sphingomonas hengshuiensis A kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months MAG_59 63.79 6.9 512 3819711 39.22 10665 ['SAMEA104430799', 'SAMEA104430800', 'SAMEA104430801', 'SAMEA104430802', 'SAMEA104430803', 'SAMEA104430804', 'SAMEA104430805', 'SAMEA104430806', 'SAMEA104430807', 'SAMEA104430808', 'SAMEA104430809', 'SAMEA104430810', 'SAMEA104430811', 'SAMEA104430812', 'SAMEA104430813', 'SAMEA104430814', 'SAMEA104430815', 'SAMEA104430816', 'SAMEA104430817', 'SAMEA104430818', 'SAMEA104430819', 'SAMEA104430820', 'SAMEA104430821', 'SAMEA104430822', 'SAMEA104430823', 'SAMEA104430824', 'SAMEA104430825', 'SAMEA104430826', 'SAMEA104430827', 'SAMEA104430828', 'SAMEA104430829', 'SAMEA104430830', 'SAMEA104430831', 'SAMEA104430832', 'SAMEA104430833', 'SAMEA104430834', 'SAMEA104430835', 'SAMEA104430836', 'SAMEA104430837', 'SAMEA104430838', 'SAMEA104430839', 'SAMEA104430840', 'SAMEA104430841', 'SAMEA104430842', 'SAMEA104430843', 'SAMEA104430844', 'SAMEA104430845', 'SAMEA104430846', 'SAMEA104430847', 'SAMEA104430848', 'SAMEA104430849', 'SAMEA104430850', 'SAMEA104430851', 'SAMEA104430852', 'SAMEA104430853', 'SAMEA104430854', 'SAMEA104430855', 'SAMEA104430856', 'SAMEA104430857', 'SAMN00623069', 'SAMN00623070', 'SAMN00623071', 'SAMN00623072', 'SAMN00623073', 'SAMN00623074', 'SAMN00623075', 'SAMN00623076', 'SAMN00623077', 'SAMN00623078'] ['ERR2298550', 'ERR2298551', 'ERR2298552', 'ERR2298553', 'ERR2298554', 'ERR2298555', 'ERR2298556', 'ERR2298557', 'ERR2298558', 'ERR2298559', 'ERR2298560', 'ERR2298561', 'ERR2298562', 'ERR2298563', 'ERR2298564', 'ERR2298565', 'ERR2298566', 'ERR2298567', 'ERR2298568', 'ERR2298569', 'ERR2298570', 'ERR2298571', 'ERR2298572', 'ERR2298573', 'ERR2298574', 'ERR2298575', 'ERR2298576', 'ERR2298577', 'ERR2298578', 'ERR2298579', 'ERR2298580', 'ERR2298581', 'ERR2298582', 'ERR2298583', 'ERR2298584', 'ERR2298585', 'ERR2298586', 'ERR2298587', 'ERR2298588', 'ERR2298589', 'ERR2298590', 'ERR2298591', 'ERR2298592', 'ERR2298593', 'ERR2298594', 'ERR2298595', 'ERR2298596', 'ERR2298597', 'ERR2298598', 'ERR2298599', 'ERR2298600', 'ERR2298601', 'ERR2298602', 'ERR2298603', 'ERR2298604', 'ERR2298605', 'ERR2298606', 'ERR2298607', 'ERR2298608', 'SRR256747', 'SRR256748', 'SRR256749', 'SRR256750', 'SRR256751', 'SRR256752', 'SRR256753', 'SRR256754', 'SRR256755', 'SRR256756'] ['Korea', 'China'] ['PRJEB23957', 'PRJNA50815'] ['ERP105740', 'SRP003198'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 MAG_59 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months MAG_80 71.73 9.87 539 1409778 36.59 2614 ['SAMEA104430799', 'SAMEA104430800', 'SAMEA104430801', 'SAMEA104430802', 'SAMEA104430803', 'SAMEA104430804', 'SAMEA104430805', 'SAMEA104430806', 'SAMEA104430807', 'SAMEA104430808', 'SAMEA104430809', 'SAMEA104430810', 'SAMEA104430811', 'SAMEA104430812', 'SAMEA104430813', 'SAMEA104430814', 'SAMEA104430815', 'SAMEA104430816', 'SAMEA104430817', 'SAMEA104430818', 'SAMEA104430819', 'SAMEA104430820', 'SAMEA104430821', 'SAMEA104430822', 'SAMEA104430823', 'SAMEA104430824', 'SAMEA104430825', 'SAMEA104430826', 'SAMEA104430827', 'SAMEA104430828', 'SAMEA104430829', 'SAMEA104430830', 'SAMEA104430831', 'SAMEA104430832', 'SAMEA104430833', 'SAMEA104430834', 'SAMEA104430835', 'SAMEA104430836', 'SAMEA104430837', 'SAMEA104430838', 'SAMEA104430839', 'SAMEA104430840', 'SAMEA104430841', 'SAMEA104430842', 'SAMEA104430843', 'SAMEA104430844', 'SAMEA104430845', 'SAMEA104430846', 'SAMEA104430847', 'SAMEA104430848', 'SAMEA104430849', 'SAMEA104430850', 'SAMEA104430851', 'SAMEA104430852', 'SAMEA104430853', 'SAMEA104430854', 'SAMEA104430855', 'SAMEA104430856', 'SAMEA104430857', 'SAMN00623069', 'SAMN00623070', 'SAMN00623071', 'SAMN00623072', 'SAMN00623073', 'SAMN00623074', 'SAMN00623075', 'SAMN00623076', 'SAMN00623077', 'SAMN00623078'] ['ERR2298550', 'ERR2298551', 'ERR2298552', 'ERR2298553', 'ERR2298554', 'ERR2298555', 'ERR2298556', 'ERR2298557', 'ERR2298558', 'ERR2298559', 'ERR2298560', 'ERR2298561', 'ERR2298562', 'ERR2298563', 'ERR2298564', 'ERR2298565', 'ERR2298566', 'ERR2298567', 'ERR2298568', 'ERR2298569', 'ERR2298570', 'ERR2298571', 'ERR2298572', 'ERR2298573', 'ERR2298574', 'ERR2298575', 'ERR2298576', 'ERR2298577', 'ERR2298578', 'ERR2298579', 'ERR2298580', 'ERR2298581', 'ERR2298582', 'ERR2298583', 'ERR2298584', 'ERR2298585', 'ERR2298586', 'ERR2298587', 'ERR2298588', 'ERR2298589', 'ERR2298590', 'ERR2298591', 'ERR2298592', 'ERR2298593', 'ERR2298594', 'ERR2298595', 'ERR2298596', 'ERR2298597', 'ERR2298598', 'ERR2298599', 'ERR2298600', 'ERR2298601', 'ERR2298602', 'ERR2298603', 'ERR2298604', 'ERR2298605', 'ERR2298606', 'ERR2298607', 'ERR2298608', 'SRR256747', 'SRR256748', 'SRR256749', 'SRR256750', 'SRR256751', 'SRR256752', 'SRR256753', 'SRR256754', 'SRR256755', 'SRR256756'] ['Korea', 'China'] ['PRJEB23957', 'PRJNA50815'] ['ERP105740', 'SRP003198'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0086-005_Weissella_koreensis_CBA3615 MAG_80 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella koreensis kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months MAG_126 66.83 0.54 460 2473621 40.65 7759 ['SAMEA104430799', 'SAMEA104430800', 'SAMEA104430801', 'SAMEA104430802', 'SAMEA104430803', 'SAMEA104430804', 'SAMEA104430805', 'SAMEA104430806', 'SAMEA104430807', 'SAMEA104430808', 'SAMEA104430809', 'SAMEA104430810', 'SAMEA104430811', 'SAMEA104430812', 'SAMEA104430813', 'SAMEA104430814', 'SAMEA104430815', 'SAMEA104430816', 'SAMEA104430817', 'SAMEA104430818', 'SAMEA104430819', 'SAMEA104430820', 'SAMEA104430821', 'SAMEA104430822', 'SAMEA104430823', 'SAMEA104430824', 'SAMEA104430825', 'SAMEA104430826', 'SAMEA104430827', 'SAMEA104430828', 'SAMEA104430829', 'SAMEA104430830', 'SAMEA104430831', 'SAMEA104430832', 'SAMEA104430833', 'SAMEA104430834', 'SAMEA104430835', 'SAMEA104430836', 'SAMEA104430837', 'SAMEA104430838', 'SAMEA104430839', 'SAMEA104430840', 'SAMEA104430841', 'SAMEA104430842', 'SAMEA104430843', 'SAMEA104430844', 'SAMEA104430845', 'SAMEA104430846', 'SAMEA104430847', 'SAMEA104430848', 'SAMEA104430849', 'SAMEA104430850', 'SAMEA104430851', 'SAMEA104430852', 'SAMEA104430853', 'SAMEA104430854', 'SAMEA104430855', 'SAMEA104430856', 'SAMEA104430857', 'SAMN00623069', 'SAMN00623070', 'SAMN00623071', 'SAMN00623072', 'SAMN00623073', 'SAMN00623074', 'SAMN00623075', 'SAMN00623076', 'SAMN00623077', 'SAMN00623078'] ['ERR2298550', 'ERR2298551', 'ERR2298552', 'ERR2298553', 'ERR2298554', 'ERR2298555', 'ERR2298556', 'ERR2298557', 'ERR2298558', 'ERR2298559', 'ERR2298560', 'ERR2298561', 'ERR2298562', 'ERR2298563', 'ERR2298564', 'ERR2298565', 'ERR2298566', 'ERR2298567', 'ERR2298568', 'ERR2298569', 'ERR2298570', 'ERR2298571', 'ERR2298572', 'ERR2298573', 'ERR2298574', 'ERR2298575', 'ERR2298576', 'ERR2298577', 'ERR2298578', 'ERR2298579', 'ERR2298580', 'ERR2298581', 'ERR2298582', 'ERR2298583', 'ERR2298584', 'ERR2298585', 'ERR2298586', 'ERR2298587', 'ERR2298588', 'ERR2298589', 'ERR2298590', 'ERR2298591', 'ERR2298592', 'ERR2298593', 'ERR2298594', 'ERR2298595', 'ERR2298596', 'ERR2298597', 'ERR2298598', 'ERR2298599', 'ERR2298600', 'ERR2298601', 'ERR2298602', 'ERR2298603', 'ERR2298604', 'ERR2298605', 'ERR2298606', 'ERR2298607', 'ERR2298608', 'SRR256747', 'SRR256748', 'SRR256749', 'SRR256750', 'SRR256751', 'SRR256752', 'SRR256753', 'SRR256754', 'SRR256755', 'SRR256756'] ['Korea', 'China'] ['PRJEB23957', 'PRJNA50815'] ['ERP105740', 'SRP003198'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MAG_126 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months MAG_166 71.37 3.8 490 3325958 40.45 13325 ['SAMEA104430799', 'SAMEA104430800', 'SAMEA104430801', 'SAMEA104430802', 'SAMEA104430803', 'SAMEA104430804', 'SAMEA104430805', 'SAMEA104430806', 'SAMEA104430807', 'SAMEA104430808', 'SAMEA104430809', 'SAMEA104430810', 'SAMEA104430811', 'SAMEA104430812', 'SAMEA104430813', 'SAMEA104430814', 'SAMEA104430815', 'SAMEA104430816', 'SAMEA104430817', 'SAMEA104430818', 'SAMEA104430819', 'SAMEA104430820', 'SAMEA104430821', 'SAMEA104430822', 'SAMEA104430823', 'SAMEA104430824', 'SAMEA104430825', 'SAMEA104430826', 'SAMEA104430827', 'SAMEA104430828', 'SAMEA104430829', 'SAMEA104430830', 'SAMEA104430831', 'SAMEA104430832', 'SAMEA104430833', 'SAMEA104430834', 'SAMEA104430835', 'SAMEA104430836', 'SAMEA104430837', 'SAMEA104430838', 'SAMEA104430839', 'SAMEA104430840', 'SAMEA104430841', 'SAMEA104430842', 'SAMEA104430843', 'SAMEA104430844', 'SAMEA104430845', 'SAMEA104430846', 'SAMEA104430847', 'SAMEA104430848', 'SAMEA104430849', 'SAMEA104430850', 'SAMEA104430851', 'SAMEA104430852', 'SAMEA104430853', 'SAMEA104430854', 'SAMEA104430855', 'SAMEA104430856', 'SAMEA104430857', 'SAMN00623069', 'SAMN00623070', 'SAMN00623071', 'SAMN00623072', 'SAMN00623073', 'SAMN00623074', 'SAMN00623075', 'SAMN00623076', 'SAMN00623077', 'SAMN00623078'] ['ERR2298550', 'ERR2298551', 'ERR2298552', 'ERR2298553', 'ERR2298554', 'ERR2298555', 'ERR2298556', 'ERR2298557', 'ERR2298558', 'ERR2298559', 'ERR2298560', 'ERR2298561', 'ERR2298562', 'ERR2298563', 'ERR2298564', 'ERR2298565', 'ERR2298566', 'ERR2298567', 'ERR2298568', 'ERR2298569', 'ERR2298570', 'ERR2298571', 'ERR2298572', 'ERR2298573', 'ERR2298574', 'ERR2298575', 'ERR2298576', 'ERR2298577', 'ERR2298578', 'ERR2298579', 'ERR2298580', 'ERR2298581', 'ERR2298582', 'ERR2298583', 'ERR2298584', 'ERR2298585', 'ERR2298586', 'ERR2298587', 'ERR2298588', 'ERR2298589', 'ERR2298590', 'ERR2298591', 'ERR2298592', 'ERR2298593', 'ERR2298594', 'ERR2298595', 'ERR2298596', 'ERR2298597', 'ERR2298598', 'ERR2298599', 'ERR2298600', 'ERR2298601', 'ERR2298602', 'ERR2298603', 'ERR2298604', 'ERR2298605', 'ERR2298606', 'ERR2298607', 'ERR2298608', 'SRR256747', 'SRR256748', 'SRR256749', 'SRR256750', 'SRR256751', 'SRR256752', 'SRR256753', 'SRR256754', 'SRR256755', 'SRR256756'] ['Korea', 'China'] ['PRJEB23957', 'PRJNA50815'] ['ERP105740', 'SRP003198'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months MAG_181 92.91 0 403 1841819 52.55 5571 ['SAMEA104430799', 'SAMEA104430800', 'SAMEA104430801', 'SAMEA104430802', 'SAMEA104430803', 'SAMEA104430804', 'SAMEA104430805', 'SAMEA104430806', 'SAMEA104430807', 'SAMEA104430808', 'SAMEA104430809', 'SAMEA104430810', 'SAMEA104430811', 'SAMEA104430812', 'SAMEA104430813', 'SAMEA104430814', 'SAMEA104430815', 'SAMEA104430816', 'SAMEA104430817', 'SAMEA104430818', 'SAMEA104430819', 'SAMEA104430820', 'SAMEA104430821', 'SAMEA104430822', 'SAMEA104430823', 'SAMEA104430824', 'SAMEA104430825', 'SAMEA104430826', 'SAMEA104430827', 'SAMEA104430828', 'SAMEA104430829', 'SAMEA104430830', 'SAMEA104430831', 'SAMEA104430832', 'SAMEA104430833', 'SAMEA104430834', 'SAMEA104430835', 'SAMEA104430836', 'SAMEA104430837', 'SAMEA104430838', 'SAMEA104430839', 'SAMEA104430840', 'SAMEA104430841', 'SAMEA104430842', 'SAMEA104430843', 'SAMEA104430844', 'SAMEA104430845', 'SAMEA104430846', 'SAMEA104430847', 'SAMEA104430848', 'SAMEA104430849', 'SAMEA104430850', 'SAMEA104430851', 'SAMEA104430852', 'SAMEA104430853', 'SAMEA104430854', 'SAMEA104430855', 'SAMEA104430856', 'SAMEA104430857', 'SAMN00623069', 'SAMN00623070', 'SAMN00623071', 'SAMN00623072', 'SAMN00623073', 'SAMN00623074', 'SAMN00623075', 'SAMN00623076', 'SAMN00623077', 'SAMN00623078'] ['ERR2298550', 'ERR2298551', 'ERR2298552', 'ERR2298553', 'ERR2298554', 'ERR2298555', 'ERR2298556', 'ERR2298557', 'ERR2298558', 'ERR2298559', 'ERR2298560', 'ERR2298561', 'ERR2298562', 'ERR2298563', 'ERR2298564', 'ERR2298565', 'ERR2298566', 'ERR2298567', 'ERR2298568', 'ERR2298569', 'ERR2298570', 'ERR2298571', 'ERR2298572', 'ERR2298573', 'ERR2298574', 'ERR2298575', 'ERR2298576', 'ERR2298577', 'ERR2298578', 'ERR2298579', 'ERR2298580', 'ERR2298581', 'ERR2298582', 'ERR2298583', 'ERR2298584', 'ERR2298585', 'ERR2298586', 'ERR2298587', 'ERR2298588', 'ERR2298589', 'ERR2298590', 'ERR2298591', 'ERR2298592', 'ERR2298593', 'ERR2298594', 'ERR2298595', 'ERR2298596', 'ERR2298597', 'ERR2298598', 'ERR2298599', 'ERR2298600', 'ERR2298601', 'ERR2298602', 'ERR2298603', 'ERR2298604', 'ERR2298605', 'ERR2298606', 'ERR2298607', 'ERR2298608', 'SRR256747', 'SRR256748', 'SRR256749', 'SRR256750', 'SRR256751', 'SRR256752', 'SRR256753', 'SRR256754', 'SRR256755', 'SRR256756'] ['Korea', 'China'] ['PRJEB23957', 'PRJNA50815'] ['ERP105740', 'SRP003198'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746839__bin.4 MAG_475 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months MAG_195 64.05 1.17 306 954398 35.55 3341 ['SAMEA104430799', 'SAMEA104430800', 'SAMEA104430801', 'SAMEA104430802', 'SAMEA104430803', 'SAMEA104430804', 'SAMEA104430805', 'SAMEA104430806', 'SAMEA104430807', 'SAMEA104430808', 'SAMEA104430809', 'SAMEA104430810', 'SAMEA104430811', 'SAMEA104430812', 'SAMEA104430813', 'SAMEA104430814', 'SAMEA104430815', 'SAMEA104430816', 'SAMEA104430817', 'SAMEA104430818', 'SAMEA104430819', 'SAMEA104430820', 'SAMEA104430821', 'SAMEA104430822', 'SAMEA104430823', 'SAMEA104430824', 'SAMEA104430825', 'SAMEA104430826', 'SAMEA104430827', 'SAMEA104430828', 'SAMEA104430829', 'SAMEA104430830', 'SAMEA104430831', 'SAMEA104430832', 'SAMEA104430833', 'SAMEA104430834', 'SAMEA104430835', 'SAMEA104430836', 'SAMEA104430837', 'SAMEA104430838', 'SAMEA104430839', 'SAMEA104430840', 'SAMEA104430841', 'SAMEA104430842', 'SAMEA104430843', 'SAMEA104430844', 'SAMEA104430845', 'SAMEA104430846', 'SAMEA104430847', 'SAMEA104430848', 'SAMEA104430849', 'SAMEA104430850', 'SAMEA104430851', 'SAMEA104430852', 'SAMEA104430853', 'SAMEA104430854', 'SAMEA104430855', 'SAMEA104430856', 'SAMEA104430857', 'SAMN00623069', 'SAMN00623070', 'SAMN00623071', 'SAMN00623072', 'SAMN00623073', 'SAMN00623074', 'SAMN00623075', 'SAMN00623076', 'SAMN00623077', 'SAMN00623078'] ['ERR2298550', 'ERR2298551', 'ERR2298552', 'ERR2298553', 'ERR2298554', 'ERR2298555', 'ERR2298556', 'ERR2298557', 'ERR2298558', 'ERR2298559', 'ERR2298560', 'ERR2298561', 'ERR2298562', 'ERR2298563', 'ERR2298564', 'ERR2298565', 'ERR2298566', 'ERR2298567', 'ERR2298568', 'ERR2298569', 'ERR2298570', 'ERR2298571', 'ERR2298572', 'ERR2298573', 'ERR2298574', 'ERR2298575', 'ERR2298576', 'ERR2298577', 'ERR2298578', 'ERR2298579', 'ERR2298580', 'ERR2298581', 'ERR2298582', 'ERR2298583', 'ERR2298584', 'ERR2298585', 'ERR2298586', 'ERR2298587', 'ERR2298588', 'ERR2298589', 'ERR2298590', 'ERR2298591', 'ERR2298592', 'ERR2298593', 'ERR2298594', 'ERR2298595', 'ERR2298596', 'ERR2298597', 'ERR2298598', 'ERR2298599', 'ERR2298600', 'ERR2298601', 'ERR2298602', 'ERR2298603', 'ERR2298604', 'ERR2298605', 'ERR2298606', 'ERR2298607', 'ERR2298608', 'SRR256747', 'SRR256748', 'SRR256749', 'SRR256750', 'SRR256751', 'SRR256752', 'SRR256753', 'SRR256754', 'SRR256755', 'SRR256756'] ['Korea', 'China'] ['PRJEB23957', 'PRJNA50815'] ['ERP105740', 'SRP003198'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0086-005_Weissella_koreensis_CBA3615 MAG_195 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella koreensis kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months MAG_360 52.6 8.34 1205 5225091 39.74 5793 ['SAMEA104430799', 'SAMEA104430800', 'SAMEA104430801', 'SAMEA104430802', 'SAMEA104430803', 'SAMEA104430804', 'SAMEA104430805', 'SAMEA104430806', 'SAMEA104430807', 'SAMEA104430808', 'SAMEA104430809', 'SAMEA104430810', 'SAMEA104430811', 'SAMEA104430812', 'SAMEA104430813', 'SAMEA104430814', 'SAMEA104430815', 'SAMEA104430816', 'SAMEA104430817', 'SAMEA104430818', 'SAMEA104430819', 'SAMEA104430820', 'SAMEA104430821', 'SAMEA104430822', 'SAMEA104430823', 'SAMEA104430824', 'SAMEA104430825', 'SAMEA104430826', 'SAMEA104430827', 'SAMEA104430828', 'SAMEA104430829', 'SAMEA104430830', 'SAMEA104430831', 'SAMEA104430832', 'SAMEA104430833', 'SAMEA104430834', 'SAMEA104430835', 'SAMEA104430836', 'SAMEA104430837', 'SAMEA104430838', 'SAMEA104430839', 'SAMEA104430840', 'SAMEA104430841', 'SAMEA104430842', 'SAMEA104430843', 'SAMEA104430844', 'SAMEA104430845', 'SAMEA104430846', 'SAMEA104430847', 'SAMEA104430848', 'SAMEA104430849', 'SAMEA104430850', 'SAMEA104430851', 'SAMEA104430852', 'SAMEA104430853', 'SAMEA104430854', 'SAMEA104430855', 'SAMEA104430856', 'SAMEA104430857', 'SAMN00623069', 'SAMN00623070', 'SAMN00623071', 'SAMN00623072', 'SAMN00623073', 'SAMN00623074', 'SAMN00623075', 'SAMN00623076', 'SAMN00623077', 'SAMN00623078'] ['ERR2298550', 'ERR2298551', 'ERR2298552', 'ERR2298553', 'ERR2298554', 'ERR2298555', 'ERR2298556', 'ERR2298557', 'ERR2298558', 'ERR2298559', 'ERR2298560', 'ERR2298561', 'ERR2298562', 'ERR2298563', 'ERR2298564', 'ERR2298565', 'ERR2298566', 'ERR2298567', 'ERR2298568', 'ERR2298569', 'ERR2298570', 'ERR2298571', 'ERR2298572', 'ERR2298573', 'ERR2298574', 'ERR2298575', 'ERR2298576', 'ERR2298577', 'ERR2298578', 'ERR2298579', 'ERR2298580', 'ERR2298581', 'ERR2298582', 'ERR2298583', 'ERR2298584', 'ERR2298585', 'ERR2298586', 'ERR2298587', 'ERR2298588', 'ERR2298589', 'ERR2298590', 'ERR2298591', 'ERR2298592', 'ERR2298593', 'ERR2298594', 'ERR2298595', 'ERR2298596', 'ERR2298597', 'ERR2298598', 'ERR2298599', 'ERR2298600', 'ERR2298601', 'ERR2298602', 'ERR2298603', 'ERR2298604', 'ERR2298605', 'ERR2298606', 'ERR2298607', 'ERR2298608', 'SRR256747', 'SRR256748', 'SRR256749', 'SRR256750', 'SRR256751', 'SRR256752', 'SRR256753', 'SRR256754', 'SRR256755', 'SRR256756'] ['Korea', 'China'] ['PRJEB23957', 'PRJNA50815'] ['ERP105740', 'SRP003198'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MAG_360 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months MAG_361 60.71 7.22 1482 6029714 41.02 4978 ['SAMEA104430799', 'SAMEA104430800', 'SAMEA104430801', 'SAMEA104430802', 'SAMEA104430803', 'SAMEA104430804', 'SAMEA104430805', 'SAMEA104430806', 'SAMEA104430807', 'SAMEA104430808', 'SAMEA104430809', 'SAMEA104430810', 'SAMEA104430811', 'SAMEA104430812', 'SAMEA104430813', 'SAMEA104430814', 'SAMEA104430815', 'SAMEA104430816', 'SAMEA104430817', 'SAMEA104430818', 'SAMEA104430819', 'SAMEA104430820', 'SAMEA104430821', 'SAMEA104430822', 'SAMEA104430823', 'SAMEA104430824', 'SAMEA104430825', 'SAMEA104430826', 'SAMEA104430827', 'SAMEA104430828', 'SAMEA104430829', 'SAMEA104430830', 'SAMEA104430831', 'SAMEA104430832', 'SAMEA104430833', 'SAMEA104430834', 'SAMEA104430835', 'SAMEA104430836', 'SAMEA104430837', 'SAMEA104430838', 'SAMEA104430839', 'SAMEA104430840', 'SAMEA104430841', 'SAMEA104430842', 'SAMEA104430843', 'SAMEA104430844', 'SAMEA104430845', 'SAMEA104430846', 'SAMEA104430847', 'SAMEA104430848', 'SAMEA104430849', 'SAMEA104430850', 'SAMEA104430851', 'SAMEA104430852', 'SAMEA104430853', 'SAMEA104430854', 'SAMEA104430855', 'SAMEA104430856', 'SAMEA104430857', 'SAMN00623069', 'SAMN00623070', 'SAMN00623071', 'SAMN00623072', 'SAMN00623073', 'SAMN00623074', 'SAMN00623075', 'SAMN00623076', 'SAMN00623077', 'SAMN00623078'] ['ERR2298550', 'ERR2298551', 'ERR2298552', 'ERR2298553', 'ERR2298554', 'ERR2298555', 'ERR2298556', 'ERR2298557', 'ERR2298558', 'ERR2298559', 'ERR2298560', 'ERR2298561', 'ERR2298562', 'ERR2298563', 'ERR2298564', 'ERR2298565', 'ERR2298566', 'ERR2298567', 'ERR2298568', 'ERR2298569', 'ERR2298570', 'ERR2298571', 'ERR2298572', 'ERR2298573', 'ERR2298574', 'ERR2298575', 'ERR2298576', 'ERR2298577', 'ERR2298578', 'ERR2298579', 'ERR2298580', 'ERR2298581', 'ERR2298582', 'ERR2298583', 'ERR2298584', 'ERR2298585', 'ERR2298586', 'ERR2298587', 'ERR2298588', 'ERR2298589', 'ERR2298590', 'ERR2298591', 'ERR2298592', 'ERR2298593', 'ERR2298594', 'ERR2298595', 'ERR2298596', 'ERR2298597', 'ERR2298598', 'ERR2298599', 'ERR2298600', 'ERR2298601', 'ERR2298602', 'ERR2298603', 'ERR2298604', 'ERR2298605', 'ERR2298606', 'ERR2298607', 'ERR2298608', 'SRR256747', 'SRR256748', 'SRR256749', 'SRR256750', 'SRR256751', 'SRR256752', 'SRR256753', 'SRR256754', 'SRR256755', 'SRR256756'] ['Korea', 'China'] ['PRJEB23957', 'PRJNA50815'] ['ERP105740', 'SRP003198'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MAG_361 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months MAG_362 69.2 0.4 467 2105474 41.17 6766 ['SAMEA104430799', 'SAMEA104430800', 'SAMEA104430801', 'SAMEA104430802', 'SAMEA104430803', 'SAMEA104430804', 'SAMEA104430805', 'SAMEA104430806', 'SAMEA104430807', 'SAMEA104430808', 'SAMEA104430809', 'SAMEA104430810', 'SAMEA104430811', 'SAMEA104430812', 'SAMEA104430813', 'SAMEA104430814', 'SAMEA104430815', 'SAMEA104430816', 'SAMEA104430817', 'SAMEA104430818', 'SAMEA104430819', 'SAMEA104430820', 'SAMEA104430821', 'SAMEA104430822', 'SAMEA104430823', 'SAMEA104430824', 'SAMEA104430825', 'SAMEA104430826', 'SAMEA104430827', 'SAMEA104430828', 'SAMEA104430829', 'SAMEA104430830', 'SAMEA104430831', 'SAMEA104430832', 'SAMEA104430833', 'SAMEA104430834', 'SAMEA104430835', 'SAMEA104430836', 'SAMEA104430837', 'SAMEA104430838', 'SAMEA104430839', 'SAMEA104430840', 'SAMEA104430841', 'SAMEA104430842', 'SAMEA104430843', 'SAMEA104430844', 'SAMEA104430845', 'SAMEA104430846', 'SAMEA104430847', 'SAMEA104430848', 'SAMEA104430849', 'SAMEA104430850', 'SAMEA104430851', 'SAMEA104430852', 'SAMEA104430853', 'SAMEA104430854', 'SAMEA104430855', 'SAMEA104430856', 'SAMEA104430857', 'SAMN00623069', 'SAMN00623070', 'SAMN00623071', 'SAMN00623072', 'SAMN00623073', 'SAMN00623074', 'SAMN00623075', 'SAMN00623076', 'SAMN00623077', 'SAMN00623078'] ['ERR2298550', 'ERR2298551', 'ERR2298552', 'ERR2298553', 'ERR2298554', 'ERR2298555', 'ERR2298556', 'ERR2298557', 'ERR2298558', 'ERR2298559', 'ERR2298560', 'ERR2298561', 'ERR2298562', 'ERR2298563', 'ERR2298564', 'ERR2298565', 'ERR2298566', 'ERR2298567', 'ERR2298568', 'ERR2298569', 'ERR2298570', 'ERR2298571', 'ERR2298572', 'ERR2298573', 'ERR2298574', 'ERR2298575', 'ERR2298576', 'ERR2298577', 'ERR2298578', 'ERR2298579', 'ERR2298580', 'ERR2298581', 'ERR2298582', 'ERR2298583', 'ERR2298584', 'ERR2298585', 'ERR2298586', 'ERR2298587', 'ERR2298588', 'ERR2298589', 'ERR2298590', 'ERR2298591', 'ERR2298592', 'ERR2298593', 'ERR2298594', 'ERR2298595', 'ERR2298596', 'ERR2298597', 'ERR2298598', 'ERR2298599', 'ERR2298600', 'ERR2298601', 'ERR2298602', 'ERR2298603', 'ERR2298604', 'ERR2298605', 'ERR2298606', 'ERR2298607', 'ERR2298608', 'SRR256747', 'SRR256748', 'SRR256749', 'SRR256750', 'SRR256751', 'SRR256752', 'SRR256753', 'SRR256754', 'SRR256755', 'SRR256756'] ['Korea', 'China'] ['PRJEB23957', 'PRJNA50815'] ['ERP105740', 'SRP003198'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MAG_362 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months MAG_567 54.96 0.13 212 944720 37.87 5413 ['SAMEA104430799', 'SAMEA104430800', 'SAMEA104430801', 'SAMEA104430802', 'SAMEA104430803', 'SAMEA104430804', 'SAMEA104430805', 'SAMEA104430806', 'SAMEA104430807', 'SAMEA104430808', 'SAMEA104430809', 'SAMEA104430810', 'SAMEA104430811', 'SAMEA104430812', 'SAMEA104430813', 'SAMEA104430814', 'SAMEA104430815', 'SAMEA104430816', 'SAMEA104430817', 'SAMEA104430818', 'SAMEA104430819', 'SAMEA104430820', 'SAMEA104430821', 'SAMEA104430822', 'SAMEA104430823', 'SAMEA104430824', 'SAMEA104430825', 'SAMEA104430826', 'SAMEA104430827', 'SAMEA104430828', 'SAMEA104430829', 'SAMEA104430830', 'SAMEA104430831', 'SAMEA104430832', 'SAMEA104430833', 'SAMEA104430834', 'SAMEA104430835', 'SAMEA104430836', 'SAMEA104430837', 'SAMEA104430838', 'SAMEA104430839', 'SAMEA104430840', 'SAMEA104430841', 'SAMEA104430842', 'SAMEA104430843', 'SAMEA104430844', 'SAMEA104430845', 'SAMEA104430846', 'SAMEA104430847', 'SAMEA104430848', 'SAMEA104430849', 'SAMEA104430850', 'SAMEA104430851', 'SAMEA104430852', 'SAMEA104430853', 'SAMEA104430854', 'SAMEA104430855', 'SAMEA104430856', 'SAMEA104430857', 'SAMN00623069', 'SAMN00623070', 'SAMN00623071', 'SAMN00623072', 'SAMN00623073', 'SAMN00623074', 'SAMN00623075', 'SAMN00623076', 'SAMN00623077', 'SAMN00623078'] ['ERR2298550', 'ERR2298551', 'ERR2298552', 'ERR2298553', 'ERR2298554', 'ERR2298555', 'ERR2298556', 'ERR2298557', 'ERR2298558', 'ERR2298559', 'ERR2298560', 'ERR2298561', 'ERR2298562', 'ERR2298563', 'ERR2298564', 'ERR2298565', 'ERR2298566', 'ERR2298567', 'ERR2298568', 'ERR2298569', 'ERR2298570', 'ERR2298571', 'ERR2298572', 'ERR2298573', 'ERR2298574', 'ERR2298575', 'ERR2298576', 'ERR2298577', 'ERR2298578', 'ERR2298579', 'ERR2298580', 'ERR2298581', 'ERR2298582', 'ERR2298583', 'ERR2298584', 'ERR2298585', 'ERR2298586', 'ERR2298587', 'ERR2298588', 'ERR2298589', 'ERR2298590', 'ERR2298591', 'ERR2298592', 'ERR2298593', 'ERR2298594', 'ERR2298595', 'ERR2298596', 'ERR2298597', 'ERR2298598', 'ERR2298599', 'ERR2298600', 'ERR2298601', 'ERR2298602', 'ERR2298603', 'ERR2298604', 'ERR2298605', 'ERR2298606', 'ERR2298607', 'ERR2298608', 'SRR256747', 'SRR256748', 'SRR256749', 'SRR256750', 'SRR256751', 'SRR256752', 'SRR256753', 'SRR256754', 'SRR256755', 'SRR256756'] ['Korea', 'China'] ['PRJEB23957', 'PRJNA50815'] ['ERP105740', 'SRP003198'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_009913915.1_ASM991391v1_genomic MAG_567 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months MAG_568 79.33 6.57 359 1364476 35.3 4361 ['SAMEA104430799', 'SAMEA104430800', 'SAMEA104430801', 'SAMEA104430802', 'SAMEA104430803', 'SAMEA104430804', 'SAMEA104430805', 'SAMEA104430806', 'SAMEA104430807', 'SAMEA104430808', 'SAMEA104430809', 'SAMEA104430810', 'SAMEA104430811', 'SAMEA104430812', 'SAMEA104430813', 'SAMEA104430814', 'SAMEA104430815', 'SAMEA104430816', 'SAMEA104430817', 'SAMEA104430818', 'SAMEA104430819', 'SAMEA104430820', 'SAMEA104430821', 'SAMEA104430822', 'SAMEA104430823', 'SAMEA104430824', 'SAMEA104430825', 'SAMEA104430826', 'SAMEA104430827', 'SAMEA104430828', 'SAMEA104430829', 'SAMEA104430830', 'SAMEA104430831', 'SAMEA104430832', 'SAMEA104430833', 'SAMEA104430834', 'SAMEA104430835', 'SAMEA104430836', 'SAMEA104430837', 'SAMEA104430838', 'SAMEA104430839', 'SAMEA104430840', 'SAMEA104430841', 'SAMEA104430842', 'SAMEA104430843', 'SAMEA104430844', 'SAMEA104430845', 'SAMEA104430846', 'SAMEA104430847', 'SAMEA104430848', 'SAMEA104430849', 'SAMEA104430850', 'SAMEA104430851', 'SAMEA104430852', 'SAMEA104430853', 'SAMEA104430854', 'SAMEA104430855', 'SAMEA104430856', 'SAMEA104430857', 'SAMN00623069', 'SAMN00623070', 'SAMN00623071', 'SAMN00623072', 'SAMN00623073', 'SAMN00623074', 'SAMN00623075', 'SAMN00623076', 'SAMN00623077', 'SAMN00623078'] ['ERR2298550', 'ERR2298551', 'ERR2298552', 'ERR2298553', 'ERR2298554', 'ERR2298555', 'ERR2298556', 'ERR2298557', 'ERR2298558', 'ERR2298559', 'ERR2298560', 'ERR2298561', 'ERR2298562', 'ERR2298563', 'ERR2298564', 'ERR2298565', 'ERR2298566', 'ERR2298567', 'ERR2298568', 'ERR2298569', 'ERR2298570', 'ERR2298571', 'ERR2298572', 'ERR2298573', 'ERR2298574', 'ERR2298575', 'ERR2298576', 'ERR2298577', 'ERR2298578', 'ERR2298579', 'ERR2298580', 'ERR2298581', 'ERR2298582', 'ERR2298583', 'ERR2298584', 'ERR2298585', 'ERR2298586', 'ERR2298587', 'ERR2298588', 'ERR2298589', 'ERR2298590', 'ERR2298591', 'ERR2298592', 'ERR2298593', 'ERR2298594', 'ERR2298595', 'ERR2298596', 'ERR2298597', 'ERR2298598', 'ERR2298599', 'ERR2298600', 'ERR2298601', 'ERR2298602', 'ERR2298603', 'ERR2298604', 'ERR2298605', 'ERR2298606', 'ERR2298607', 'ERR2298608', 'SRR256747', 'SRR256748', 'SRR256749', 'SRR256750', 'SRR256751', 'SRR256752', 'SRR256753', 'SRR256754', 'SRR256755', 'SRR256756'] ['Korea', 'China'] ['PRJEB23957', 'PRJNA50815'] ['ERP105740', 'SRP003198'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0086-005_Weissella_koreensis_CBA3615 MAG_568 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella koreensis kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months MAG_569 55.46 1.72 329 1183025 41.48 3994 ['SAMEA104430799', 'SAMEA104430800', 'SAMEA104430801', 'SAMEA104430802', 'SAMEA104430803', 'SAMEA104430804', 'SAMEA104430805', 'SAMEA104430806', 'SAMEA104430807', 'SAMEA104430808', 'SAMEA104430809', 'SAMEA104430810', 'SAMEA104430811', 'SAMEA104430812', 'SAMEA104430813', 'SAMEA104430814', 'SAMEA104430815', 'SAMEA104430816', 'SAMEA104430817', 'SAMEA104430818', 'SAMEA104430819', 'SAMEA104430820', 'SAMEA104430821', 'SAMEA104430822', 'SAMEA104430823', 'SAMEA104430824', 'SAMEA104430825', 'SAMEA104430826', 'SAMEA104430827', 'SAMEA104430828', 'SAMEA104430829', 'SAMEA104430830', 'SAMEA104430831', 'SAMEA104430832', 'SAMEA104430833', 'SAMEA104430834', 'SAMEA104430835', 'SAMEA104430836', 'SAMEA104430837', 'SAMEA104430838', 'SAMEA104430839', 'SAMEA104430840', 'SAMEA104430841', 'SAMEA104430842', 'SAMEA104430843', 'SAMEA104430844', 'SAMEA104430845', 'SAMEA104430846', 'SAMEA104430847', 'SAMEA104430848', 'SAMEA104430849', 'SAMEA104430850', 'SAMEA104430851', 'SAMEA104430852', 'SAMEA104430853', 'SAMEA104430854', 'SAMEA104430855', 'SAMEA104430856', 'SAMEA104430857', 'SAMN00623069', 'SAMN00623070', 'SAMN00623071', 'SAMN00623072', 'SAMN00623073', 'SAMN00623074', 'SAMN00623075', 'SAMN00623076', 'SAMN00623077', 'SAMN00623078'] ['ERR2298550', 'ERR2298551', 'ERR2298552', 'ERR2298553', 'ERR2298554', 'ERR2298555', 'ERR2298556', 'ERR2298557', 'ERR2298558', 'ERR2298559', 'ERR2298560', 'ERR2298561', 'ERR2298562', 'ERR2298563', 'ERR2298564', 'ERR2298565', 'ERR2298566', 'ERR2298567', 'ERR2298568', 'ERR2298569', 'ERR2298570', 'ERR2298571', 'ERR2298572', 'ERR2298573', 'ERR2298574', 'ERR2298575', 'ERR2298576', 'ERR2298577', 'ERR2298578', 'ERR2298579', 'ERR2298580', 'ERR2298581', 'ERR2298582', 'ERR2298583', 'ERR2298584', 'ERR2298585', 'ERR2298586', 'ERR2298587', 'ERR2298588', 'ERR2298589', 'ERR2298590', 'ERR2298591', 'ERR2298592', 'ERR2298593', 'ERR2298594', 'ERR2298595', 'ERR2298596', 'ERR2298597', 'ERR2298598', 'ERR2298599', 'ERR2298600', 'ERR2298601', 'ERR2298602', 'ERR2298603', 'ERR2298604', 'ERR2298605', 'ERR2298606', 'ERR2298607', 'ERR2298608', 'SRR256747', 'SRR256748', 'SRR256749', 'SRR256750', 'SRR256751', 'SRR256752', 'SRR256753', 'SRR256754', 'SRR256755', 'SRR256756'] ['Korea', 'China'] ['PRJEB23957', 'PRJNA50815'] ['ERP105740', 'SRP003198'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months MAG_570 68.63 5.1 520 1518796 36.84 3177 ['SAMEA104430799', 'SAMEA104430800', 'SAMEA104430801', 'SAMEA104430802', 'SAMEA104430803', 'SAMEA104430804', 'SAMEA104430805', 'SAMEA104430806', 'SAMEA104430807', 'SAMEA104430808', 'SAMEA104430809', 'SAMEA104430810', 'SAMEA104430811', 'SAMEA104430812', 'SAMEA104430813', 'SAMEA104430814', 'SAMEA104430815', 'SAMEA104430816', 'SAMEA104430817', 'SAMEA104430818', 'SAMEA104430819', 'SAMEA104430820', 'SAMEA104430821', 'SAMEA104430822', 'SAMEA104430823', 'SAMEA104430824', 'SAMEA104430825', 'SAMEA104430826', 'SAMEA104430827', 'SAMEA104430828', 'SAMEA104430829', 'SAMEA104430830', 'SAMEA104430831', 'SAMEA104430832', 'SAMEA104430833', 'SAMEA104430834', 'SAMEA104430835', 'SAMEA104430836', 'SAMEA104430837', 'SAMEA104430838', 'SAMEA104430839', 'SAMEA104430840', 'SAMEA104430841', 'SAMEA104430842', 'SAMEA104430843', 'SAMEA104430844', 'SAMEA104430845', 'SAMEA104430846', 'SAMEA104430847', 'SAMEA104430848', 'SAMEA104430849', 'SAMEA104430850', 'SAMEA104430851', 'SAMEA104430852', 'SAMEA104430853', 'SAMEA104430854', 'SAMEA104430855', 'SAMEA104430856', 'SAMEA104430857', 'SAMN00623069', 'SAMN00623070', 'SAMN00623071', 'SAMN00623072', 'SAMN00623073', 'SAMN00623074', 'SAMN00623075', 'SAMN00623076', 'SAMN00623077', 'SAMN00623078'] ['ERR2298550', 'ERR2298551', 'ERR2298552', 'ERR2298553', 'ERR2298554', 'ERR2298555', 'ERR2298556', 'ERR2298557', 'ERR2298558', 'ERR2298559', 'ERR2298560', 'ERR2298561', 'ERR2298562', 'ERR2298563', 'ERR2298564', 'ERR2298565', 'ERR2298566', 'ERR2298567', 'ERR2298568', 'ERR2298569', 'ERR2298570', 'ERR2298571', 'ERR2298572', 'ERR2298573', 'ERR2298574', 'ERR2298575', 'ERR2298576', 'ERR2298577', 'ERR2298578', 'ERR2298579', 'ERR2298580', 'ERR2298581', 'ERR2298582', 'ERR2298583', 'ERR2298584', 'ERR2298585', 'ERR2298586', 'ERR2298587', 'ERR2298588', 'ERR2298589', 'ERR2298590', 'ERR2298591', 'ERR2298592', 'ERR2298593', 'ERR2298594', 'ERR2298595', 'ERR2298596', 'ERR2298597', 'ERR2298598', 'ERR2298599', 'ERR2298600', 'ERR2298601', 'ERR2298602', 'ERR2298603', 'ERR2298604', 'ERR2298605', 'ERR2298606', 'ERR2298607', 'ERR2298608', 'SRR256747', 'SRR256748', 'SRR256749', 'SRR256750', 'SRR256751', 'SRR256752', 'SRR256753', 'SRR256754', 'SRR256755', 'SRR256756'] ['Korea', 'China'] ['PRJEB23957', 'PRJNA50815'] ['ERP105740', 'SRP003198'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_000298875.1_ASM29887v1_genomic MAG_570 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc gelidum kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months MAG_571 66.21 2.04 298 981681 35.77 3544 ['SAMEA104430799', 'SAMEA104430800', 'SAMEA104430801', 'SAMEA104430802', 'SAMEA104430803', 'SAMEA104430804', 'SAMEA104430805', 'SAMEA104430806', 'SAMEA104430807', 'SAMEA104430808', 'SAMEA104430809', 'SAMEA104430810', 'SAMEA104430811', 'SAMEA104430812', 'SAMEA104430813', 'SAMEA104430814', 'SAMEA104430815', 'SAMEA104430816', 'SAMEA104430817', 'SAMEA104430818', 'SAMEA104430819', 'SAMEA104430820', 'SAMEA104430821', 'SAMEA104430822', 'SAMEA104430823', 'SAMEA104430824', 'SAMEA104430825', 'SAMEA104430826', 'SAMEA104430827', 'SAMEA104430828', 'SAMEA104430829', 'SAMEA104430830', 'SAMEA104430831', 'SAMEA104430832', 'SAMEA104430833', 'SAMEA104430834', 'SAMEA104430835', 'SAMEA104430836', 'SAMEA104430837', 'SAMEA104430838', 'SAMEA104430839', 'SAMEA104430840', 'SAMEA104430841', 'SAMEA104430842', 'SAMEA104430843', 'SAMEA104430844', 'SAMEA104430845', 'SAMEA104430846', 'SAMEA104430847', 'SAMEA104430848', 'SAMEA104430849', 'SAMEA104430850', 'SAMEA104430851', 'SAMEA104430852', 'SAMEA104430853', 'SAMEA104430854', 'SAMEA104430855', 'SAMEA104430856', 'SAMEA104430857', 'SAMN00623069', 'SAMN00623070', 'SAMN00623071', 'SAMN00623072', 'SAMN00623073', 'SAMN00623074', 'SAMN00623075', 'SAMN00623076', 'SAMN00623077', 'SAMN00623078'] ['ERR2298550', 'ERR2298551', 'ERR2298552', 'ERR2298553', 'ERR2298554', 'ERR2298555', 'ERR2298556', 'ERR2298557', 'ERR2298558', 'ERR2298559', 'ERR2298560', 'ERR2298561', 'ERR2298562', 'ERR2298563', 'ERR2298564', 'ERR2298565', 'ERR2298566', 'ERR2298567', 'ERR2298568', 'ERR2298569', 'ERR2298570', 'ERR2298571', 'ERR2298572', 'ERR2298573', 'ERR2298574', 'ERR2298575', 'ERR2298576', 'ERR2298577', 'ERR2298578', 'ERR2298579', 'ERR2298580', 'ERR2298581', 'ERR2298582', 'ERR2298583', 'ERR2298584', 'ERR2298585', 'ERR2298586', 'ERR2298587', 'ERR2298588', 'ERR2298589', 'ERR2298590', 'ERR2298591', 'ERR2298592', 'ERR2298593', 'ERR2298594', 'ERR2298595', 'ERR2298596', 'ERR2298597', 'ERR2298598', 'ERR2298599', 'ERR2298600', 'ERR2298601', 'ERR2298602', 'ERR2298603', 'ERR2298604', 'ERR2298605', 'ERR2298606', 'ERR2298607', 'ERR2298608', 'SRR256747', 'SRR256748', 'SRR256749', 'SRR256750', 'SRR256751', 'SRR256752', 'SRR256753', 'SRR256754', 'SRR256755', 'SRR256756'] ['Korea', 'China'] ['PRJEB23957', 'PRJNA50815'] ['ERP105740', 'SRP003198'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0086-005_Weissella_koreensis_CBA3615 ODFM-BA-A-0086-005_Weissella_koreensis_CBA3615 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella koreensis kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months MAG_572 54.31 3.45 264 890422 41.44 3606 ['SAMEA104430799', 'SAMEA104430800', 'SAMEA104430801', 'SAMEA104430802', 'SAMEA104430803', 'SAMEA104430804', 'SAMEA104430805', 'SAMEA104430806', 'SAMEA104430807', 'SAMEA104430808', 'SAMEA104430809', 'SAMEA104430810', 'SAMEA104430811', 'SAMEA104430812', 'SAMEA104430813', 'SAMEA104430814', 'SAMEA104430815', 'SAMEA104430816', 'SAMEA104430817', 'SAMEA104430818', 'SAMEA104430819', 'SAMEA104430820', 'SAMEA104430821', 'SAMEA104430822', 'SAMEA104430823', 'SAMEA104430824', 'SAMEA104430825', 'SAMEA104430826', 'SAMEA104430827', 'SAMEA104430828', 'SAMEA104430829', 'SAMEA104430830', 'SAMEA104430831', 'SAMEA104430832', 'SAMEA104430833', 'SAMEA104430834', 'SAMEA104430835', 'SAMEA104430836', 'SAMEA104430837', 'SAMEA104430838', 'SAMEA104430839', 'SAMEA104430840', 'SAMEA104430841', 'SAMEA104430842', 'SAMEA104430843', 'SAMEA104430844', 'SAMEA104430845', 'SAMEA104430846', 'SAMEA104430847', 'SAMEA104430848', 'SAMEA104430849', 'SAMEA104430850', 'SAMEA104430851', 'SAMEA104430852', 'SAMEA104430853', 'SAMEA104430854', 'SAMEA104430855', 'SAMEA104430856', 'SAMEA104430857', 'SAMN00623069', 'SAMN00623070', 'SAMN00623071', 'SAMN00623072', 'SAMN00623073', 'SAMN00623074', 'SAMN00623075', 'SAMN00623076', 'SAMN00623077', 'SAMN00623078'] ['ERR2298550', 'ERR2298551', 'ERR2298552', 'ERR2298553', 'ERR2298554', 'ERR2298555', 'ERR2298556', 'ERR2298557', 'ERR2298558', 'ERR2298559', 'ERR2298560', 'ERR2298561', 'ERR2298562', 'ERR2298563', 'ERR2298564', 'ERR2298565', 'ERR2298566', 'ERR2298567', 'ERR2298568', 'ERR2298569', 'ERR2298570', 'ERR2298571', 'ERR2298572', 'ERR2298573', 'ERR2298574', 'ERR2298575', 'ERR2298576', 'ERR2298577', 'ERR2298578', 'ERR2298579', 'ERR2298580', 'ERR2298581', 'ERR2298582', 'ERR2298583', 'ERR2298584', 'ERR2298585', 'ERR2298586', 'ERR2298587', 'ERR2298588', 'ERR2298589', 'ERR2298590', 'ERR2298591', 'ERR2298592', 'ERR2298593', 'ERR2298594', 'ERR2298595', 'ERR2298596', 'ERR2298597', 'ERR2298598', 'ERR2298599', 'ERR2298600', 'ERR2298601', 'ERR2298602', 'ERR2298603', 'ERR2298604', 'ERR2298605', 'ERR2298606', 'ERR2298607', 'ERR2298608', 'SRR256747', 'SRR256748', 'SRR256749', 'SRR256750', 'SRR256751', 'SRR256752', 'SRR256753', 'SRR256754', 'SRR256755', 'SRR256756'] ['Korea', 'China'] ['PRJEB23957', 'PRJNA50815'] ['ERP105740', 'SRP003198'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 MAG_572 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967691__bin.4 95.43721909 0.970017637 81 2197615 38.69 51890 ERS3967691 ERR4757806 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 LeechJ_2020__ERS3967691__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967691__bin.13 92.61758691 1.533742331 211 1949345 45.24 12867 ERS3967691 ERR4757806 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967691__bin.13 LeechJ_2020__ERS3967691__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella cibaria kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967691__bin.10 64.30041152 0.685871056 21 1472025 44.03 157295 ERS3967691 ERR4757806 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967692__bin.3 LeechJ_2020__ERS3967691__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus NA kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967712__bin.13 65.96858639 0 28 1266090 37.26 69580 ERS3967712 ERR4757827 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967712__bin.13 LeechJ_2020__ERS3967712__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus NA kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967712__bin.8 82.1031746 0.74500768 405 1820535 60.25 5237 ERS3967712 ERR4757827 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967706__bin.3 LeechJ_2020__ERS3967706__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium longum kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967712__bin.4 91.06049981 1.585144928 182 1669317 47.25 13267 ERS3967712 ERR4757827 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967703__bin.6 LeechJ_2020__ERS3967703__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus mucosae kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967712__bin.12 56.89655172 0 10 810534 45.77 106988 ERS3967712 ERR4757827 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MASTER_WP4_UNINA_1__ST007_71775__bin.2 MASTER_WP4_UNINA_1__ST007_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraxiangfangensis kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967730__bin.5 89.51556011 3.56917873 294 2016941 38.73 10514 ERS3967730 ERR4757845 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MASTER_WP4_TEAGASC_1__TGS14-22__bin.36 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967731__bin.1 79.9382716 1.851851852 96 1794230 45.32 38648 ERS3967731 ERR4757846 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967745__bin.1 51.17273791 0.115207373 428 1268570 60.43 3043 ERS3967745 ERR4757860 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967706__bin.3 LeechJ_2020__ERS3967745__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium longum kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967745__bin.4 65.66557493 0.815217391 333 1112393 47.39 3674 ERS3967745 ERR4757860 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967703__bin.6 LeechJ_2020__ERS3967745__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus mucosae kimchi kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months SEM_41_S58.18 67.4 0 639 3669681 66.03 6485 SAMN40633126 SRS20892365 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 SEM_41_S58.18 SEM_41_S58.18 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_B Pseudomonas B benzopyrenica kimchi kimchi_brine_48_h Plant Vegetables_Aromatics cabbage pickled vegetables liquid low lactic mesophilic 1 day - 3 months SEM_41_S58.19 72.56 3.76 853 4583411 61.67 5923 SAMN40633126 SRS20892365 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 SEM_41_S58.19 SEM_41_S58.19 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Xanthomonadaceae;Stenotrophomonas Stenotrophomonas maltophilia AJ kimchi kimchi_brine_48_h Plant Vegetables_Aromatics cabbage pickled vegetables liquid low lactic mesophilic 1 day - 3 months LeechJ_xxxx__AF62__bin.1 94.53551913 0.72859745 105 1654558 52.92 24530 SAMN39472481 SRR27593184 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF62__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum koko koko Plant Grain millet starch-based staple semi-solid low lactic mesophilic 1-3 days LeechJ_xxxx__AF62__bin.5 84.17742237 2.649176955 305 1212222 37.04 4635 SAMN39472481 SRR27593184 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KharnaiorP_2023__SRR22859379__bin.8 LeechJ_xxxx__AF62__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus koko koko Plant Grain millet starch-based staple semi-solid low lactic mesophilic 1-3 days LeechJ_xxxx__AF62__bin.7 89.67280164 4.198071867 328 1704351 45 6699 SAMN39472481 SRR27593184 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_004771075.1_ASM477107v1_genomic LeechJ_xxxx__AF62__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella confusa koko koko Plant Grain millet starch-based staple semi-solid low lactic mesophilic 1-3 days LeechJ_xxxx__AF62__bin.2 98.97762346 0.308641975 22 1869425 42.2 192334 SAMN39472481 SRR27593184 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 LeechJ_xxxx__AF62__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici koko koko Plant Grain millet starch-based staple semi-solid low lactic mesophilic 1-3 days GCF_000817255.2_ASM81725v2_genomic 100 2.49 268 4465062 61.36 70565 GCF_000817255.2 GCF_000817255.2 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_000817255.2_ASM81725v2_genomic GCF_000817255.2_ASM81725v2_genomic Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter intermedius kombucha kombucha Plant Sugar sugar beverage liquid low acetic mesophilic 1-14 days GCF_015244705.1_ASM1524470v1_genomic 100 1 67 3421090 60.51 308781 GCF_015244705.1 GCF_015244705.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 G_275_3_oxydans_assembly MortensenS_xxxx__WK002-2-L-08h-01F7_S31__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter potus kombucha kombucha Plant Sugar sugar beverage liquid low acetic mesophilic 1-14 days MAG_1 94.21 0.63 506 8680901 69.63 23840 ['SAMEA104222288', 'SAMEA104307662', 'SAMEA104312991', 'SAMEA104314608', 'SAMEA104314616', 'SAMEA104314677', 'SAMEA104314678', 'SAMEA104312846', 'SAMEA104314602', 'SAMEA104314615', 'SAMEA104216920', 'SAMEA104314679'] ['ERR2102261', 'ERR2126384', 'ERR2133080', 'ERR2135449', 'ERR2135457', 'ERR2135518', 'ERR2135519', 'ERR2401479', 'ERR2401480', 'ERR2401481', 'ERR2401482', 'ERR2437613', 'ERR2437614'] Turkey PRJEB22200 ERP024546 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_1 MAG_1 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Variovorax Variovorax sp900115375 kombucha kombucha Plant Sugar sugar beverage liquid low acetic mesophilic 1-14 days MAG_31 95.92 3.04 160 3806945 66.7 41864 ['SAMEA104222288', 'SAMEA104307662', 'SAMEA104312991', 'SAMEA104314608', 'SAMEA104314616', 'SAMEA104314677', 'SAMEA104314678', 'SAMEA104312846', 'SAMEA104314602', 'SAMEA104314615', 'SAMEA104216920', 'SAMEA104314679'] ['ERR2102261', 'ERR2126384', 'ERR2133080', 'ERR2135449', 'ERR2135457', 'ERR2135518', 'ERR2135519', 'ERR2401479', 'ERR2401480', 'ERR2401481', 'ERR2401482', 'ERR2437613', 'ERR2437614'] Turkey PRJEB22200 ERP024546 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_31 MAG_31 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Rhodocyclaceae;Methyloversatilis Methyloversatilis discipulorum A kombucha kombucha Plant Sugar sugar beverage liquid low acetic mesophilic 1-14 days MAG_37 96.3 0 142 2951098 60.56 31831 ['SAMEA104222288', 'SAMEA104307662', 'SAMEA104312991', 'SAMEA104314608', 'SAMEA104314616', 'SAMEA104314677', 'SAMEA104314678', 'SAMEA104312846', 'SAMEA104314602', 'SAMEA104314615', 'SAMEA104216920', 'SAMEA104314679'] ['ERR2102261', 'ERR2126384', 'ERR2133080', 'ERR2135449', 'ERR2135457', 'ERR2135518', 'ERR2135519', 'ERR2401479', 'ERR2401480', 'ERR2401481', 'ERR2401482', 'ERR2437613', 'ERR2437614'] Turkey PRJEB22200 ERP024546 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_37 MAG_37 Armatimonadota;Fimbriimonadia;Fimbriimonadales;GBS-DC;LDYB01 LDYB01 sp001442985 kombucha kombucha Plant Sugar sugar beverage liquid low acetic mesophilic 1-14 days MAG_48 98.12 6.09 77 2825412 64.13 67210 ['SAMEA104222288', 'SAMEA104307662', 'SAMEA104312991', 'SAMEA104314608', 'SAMEA104314616', 'SAMEA104314677', 'SAMEA104314678', 'SAMEA104312846', 'SAMEA104314602', 'SAMEA104314615', 'SAMEA104216920', 'SAMEA104314679'] ['ERR2102261', 'ERR2126384', 'ERR2133080', 'ERR2135449', 'ERR2135457', 'ERR2135518', 'ERR2135519', 'ERR2401479', 'ERR2401480', 'ERR2401481', 'ERR2401482', 'ERR2437613', 'ERR2437614'] Turkey PRJEB22200 ERP024546 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ArikanM_2020__ERS1939580__bin.2 ArikanM_2020__ERS1939580__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter xylinus C kombucha kombucha Plant Sugar sugar beverage liquid low acetic mesophilic 1-14 days MAG_52 90.48 0.55 230 2707193 71.3 16659 ['SAMEA104222288', 'SAMEA104307662', 'SAMEA104312991', 'SAMEA104314608', 'SAMEA104314616', 'SAMEA104314677', 'SAMEA104314678', 'SAMEA104312846', 'SAMEA104314602', 'SAMEA104314615', 'SAMEA104216920', 'SAMEA104314679'] ['ERR2102261', 'ERR2126384', 'ERR2133080', 'ERR2135449', 'ERR2135457', 'ERR2135518', 'ERR2135519', 'ERR2401479', 'ERR2401480', 'ERR2401481', 'ERR2401482', 'ERR2437613', 'ERR2437614'] Turkey PRJEB22200 ERP024546 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_52 MAG_52 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Xanthomonadaceae;Lysobacter_F Lysobacter F thermophilus kombucha kombucha Plant Sugar sugar beverage liquid low acetic mesophilic 1-14 days MAG_98 79.4 3.25 605 3526943 68.15 7699 ['SAMEA104222288', 'SAMEA104307662', 'SAMEA104312991', 'SAMEA104314608', 'SAMEA104314616', 'SAMEA104314677', 'SAMEA104314678', 'SAMEA104312846', 'SAMEA104314602', 'SAMEA104314615', 'SAMEA104216920', 'SAMEA104314679'] ['ERR2102261', 'ERR2126384', 'ERR2133080', 'ERR2135449', 'ERR2135457', 'ERR2135518', 'ERR2135519', 'ERR2401479', 'ERR2401480', 'ERR2401481', 'ERR2401482', 'ERR2437613', 'ERR2437614'] Turkey PRJEB22200 ERP024546 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_98 MAG_98 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Sphingomonas Sphingomonas sp017418975 kombucha kombucha Plant Sugar sugar beverage liquid low acetic mesophilic 1-14 days MAG_111 98.03 1.38 147 2512928 60.1 28110 ['SAMEA104222288', 'SAMEA104307662', 'SAMEA104312991', 'SAMEA104314608', 'SAMEA104314616', 'SAMEA104314677', 'SAMEA104314678', 'SAMEA104312846', 'SAMEA104314602', 'SAMEA104314615', 'SAMEA104216920', 'SAMEA104314679'] ['ERR2102261', 'ERR2126384', 'ERR2133080', 'ERR2135449', 'ERR2135457', 'ERR2135518', 'ERR2135519', 'ERR2401479', 'ERR2401480', 'ERR2401481', 'ERR2401482', 'ERR2437613', 'ERR2437614'] Turkey PRJEB22200 ERP024546 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_34 MAG_34 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Cutibacterium Cutibacterium acnes kombucha kombucha Plant Sugar sugar beverage liquid low acetic mesophilic 1-14 days MAG_148 59.07 7.43 128 2221598 63.76 27474 ['SAMEA104222288', 'SAMEA104307662', 'SAMEA104312991', 'SAMEA104314608', 'SAMEA104314616', 'SAMEA104314677', 'SAMEA104314678', 'SAMEA104312846', 'SAMEA104314602', 'SAMEA104314615', 'SAMEA104216920', 'SAMEA104314679'] ['ERR2102261', 'ERR2126384', 'ERR2133080', 'ERR2135449', 'ERR2135457', 'ERR2135518', 'ERR2135519', 'ERR2401479', 'ERR2401480', 'ERR2401481', 'ERR2401482', 'ERR2437613', 'ERR2437614'] Turkey PRJEB22200 ERP024546 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_148 MAG_148 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter NA kombucha kombucha Plant Sugar sugar beverage liquid low acetic mesophilic 1-14 days MAG_160 52.75 0.87 630 1680189 66.32 2723 ['SAMEA104222288', 'SAMEA104307662', 'SAMEA104312991', 'SAMEA104314608', 'SAMEA104314616', 'SAMEA104314677', 'SAMEA104314678', 'SAMEA104312846', 'SAMEA104314602', 'SAMEA104314615', 'SAMEA104216920', 'SAMEA104314679'] ['ERR2102261', 'ERR2126384', 'ERR2133080', 'ERR2135449', 'ERR2135457', 'ERR2135518', 'ERR2135519', 'ERR2401479', 'ERR2401480', 'ERR2401481', 'ERR2401482', 'ERR2437613', 'ERR2437614'] Turkey PRJEB22200 ERP024546 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_160 MAG_160 Pseudomonadota;Alphaproteobacteria;Caulobacterales;Caulobacteraceae;Brevundimonas Brevundimonas sp001422455 kombucha kombucha Plant Sugar sugar beverage liquid low acetic mesophilic 1-14 days MAG_164 69.56 1.64 566 1672057 60.03 3196 ['SAMEA104222288', 'SAMEA104307662', 'SAMEA104312991', 'SAMEA104314608', 'SAMEA104314616', 'SAMEA104314677', 'SAMEA104314678', 'SAMEA104312846', 'SAMEA104314602', 'SAMEA104314615', 'SAMEA104216920', 'SAMEA104314679'] ['ERR2102261', 'ERR2126384', 'ERR2133080', 'ERR2135449', 'ERR2135457', 'ERR2135518', 'ERR2135519', 'ERR2401479', 'ERR2401480', 'ERR2401481', 'ERR2401482', 'ERR2437613', 'ERR2437614'] Turkey PRJEB22200 ERP024546 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_34 MAG_164 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Cutibacterium Cutibacterium acnes kombucha kombucha Plant Sugar sugar beverage liquid low acetic mesophilic 1-14 days MAG_306 66.67 9.48 106 2364380 64.52 34650 ['SAMEA104222288', 'SAMEA104307662', 'SAMEA104312991', 'SAMEA104314608', 'SAMEA104314616', 'SAMEA104314677', 'SAMEA104314678', 'SAMEA104312846', 'SAMEA104314602', 'SAMEA104314615', 'SAMEA104216920', 'SAMEA104314679'] ['ERR2102261', 'ERR2126384', 'ERR2133080', 'ERR2135449', 'ERR2135457', 'ERR2135518', 'ERR2135519', 'ERR2401479', 'ERR2401480', 'ERR2401481', 'ERR2401482', 'ERR2437613', 'ERR2437614'] Turkey PRJEB22200 ERP024546 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_011611525.1_ASM1161152v1_genomic MAG_306 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter rhaeticus kombucha kombucha Plant Sugar sugar beverage liquid low acetic mesophilic 1-14 days MAG_307 69.69 3.71 764 3405625 63.96 5539 ['SAMEA104222288', 'SAMEA104307662', 'SAMEA104312991', 'SAMEA104314608', 'SAMEA104314616', 'SAMEA104314677', 'SAMEA104314678', 'SAMEA104312846', 'SAMEA104314602', 'SAMEA104314615', 'SAMEA104216920', 'SAMEA104314679'] ['ERR2102261', 'ERR2126384', 'ERR2133080', 'ERR2135449', 'ERR2135457', 'ERR2135518', 'ERR2135519', 'ERR2401479', 'ERR2401480', 'ERR2401481', 'ERR2401482', 'ERR2437613', 'ERR2437614'] Turkey PRJEB22200 ERP024546 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_307 MAG_307 Pseudomonadota;Alphaproteobacteria;Rhizobiales;Rhizobiaceae;Mesorhizobium Mesorhizobium terrae kombucha kombucha Plant Sugar sugar beverage liquid low acetic mesophilic 1-14 days MAG_308 78.14 1.48 427 1755093 64.01 5038 ['SAMEA104222288', 'SAMEA104307662', 'SAMEA104312991', 'SAMEA104314608', 'SAMEA104314616', 'SAMEA104314677', 'SAMEA104314678', 'SAMEA104312846', 'SAMEA104314602', 'SAMEA104314615', 'SAMEA104216920', 'SAMEA104314679'] ['ERR2102261', 'ERR2126384', 'ERR2133080', 'ERR2135449', 'ERR2135457', 'ERR2135518', 'ERR2135519', 'ERR2401479', 'ERR2401480', 'ERR2401481', 'ERR2401482', 'ERR2437613', 'ERR2437614'] Turkey PRJEB22200 ERP024546 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_308 MAG_308 Deinococcota;Deinococci;Deinococcales;Thermaceae;Thermus Thermus scotoductus kombucha kombucha Plant Sugar sugar beverage liquid low acetic mesophilic 1-14 days MAG_363 99.5 0.5 60 3137303 63.48 110991 ['SAMEA104222288', 'SAMEA104307662', 'SAMEA104312991', 'SAMEA104314608', 'SAMEA104314616', 'SAMEA104314677', 'SAMEA104314678', 'SAMEA104312846', 'SAMEA104314602', 'SAMEA104314615', 'SAMEA104216920', 'SAMEA104314679'] ['ERR2102261', 'ERR2126384', 'ERR2133080', 'ERR2135449', 'ERR2135457', 'ERR2135518', 'ERR2135519', 'ERR2401479', 'ERR2401480', 'ERR2401481', 'ERR2401482', 'ERR2437613', 'ERR2437614'] Turkey PRJEB22200 ERP024546 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ArikanM_2020__ERS1939593__bin.5 ArikanM_2020__ERS1939593__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas entanii kombucha kombucha Plant Sugar sugar beverage liquid low acetic mesophilic 1-14 days MAG_364 94.87 2.56 145 4135315 66.35 74598 ['SAMEA104222288', 'SAMEA104307662', 'SAMEA104312991', 'SAMEA104314608', 'SAMEA104314616', 'SAMEA104314677', 'SAMEA104314678', 'SAMEA104312846', 'SAMEA104314602', 'SAMEA104314615', 'SAMEA104216920', 'SAMEA104314679'] ['ERR2102261', 'ERR2126384', 'ERR2133080', 'ERR2135449', 'ERR2135457', 'ERR2135518', 'ERR2135519', 'ERR2401479', 'ERR2401480', 'ERR2401481', 'ERR2401482', 'ERR2437613', 'ERR2437614'] Turkey PRJEB22200 ERP024546 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ArikanM_2020__ERS1939655__bin.10 ArikanM_2020__ERS1939655__bin.10 Acidobacteriota;Terriglobia;Bryobacterales;Bryobacteraceae;JANWVO01 JANWVO01 sp026002855 kombucha kombucha Plant Sugar sugar beverage liquid low acetic mesophilic 1-14 days MAG_365 96.55 0 60 2715693 64.72 67633 ['SAMEA104222288', 'SAMEA104307662', 'SAMEA104312991', 'SAMEA104314608', 'SAMEA104314616', 'SAMEA104314677', 'SAMEA104314678', 'SAMEA104312846', 'SAMEA104314602', 'SAMEA104314615', 'SAMEA104216920', 'SAMEA104314679'] ['ERR2102261', 'ERR2126384', 'ERR2133080', 'ERR2135449', 'ERR2135457', 'ERR2135518', 'ERR2135519', 'ERR2401479', 'ERR2401480', 'ERR2401481', 'ERR2401482', 'ERR2437613', 'ERR2437614'] Turkey PRJEB22200 ERP024546 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_011611525.1_ASM1161152v1_genomic ArikanM_2020__ERS1939655__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter rhaeticus kombucha kombucha Plant Sugar sugar beverage liquid low acetic mesophilic 1-14 days MAG_366 65.04 7.56 646 2539941 40.64 4567 ['SAMEA104222288', 'SAMEA104307662', 'SAMEA104312991', 'SAMEA104314608', 'SAMEA104314616', 'SAMEA104314677', 'SAMEA104314678', 'SAMEA104312846', 'SAMEA104314602', 'SAMEA104314615', 'SAMEA104216920', 'SAMEA104314679'] ['ERR2102261', 'ERR2126384', 'ERR2133080', 'ERR2135449', 'ERR2135457', 'ERR2135518', 'ERR2135519', 'ERR2401479', 'ERR2401480', 'ERR2401481', 'ERR2401482', 'ERR2437613', 'ERR2437614'] Turkey PRJEB22200 ERP024546 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_366 MAG_366 Bacillota;Bacilli;Bacillales;Anoxybacillaceae;Anoxybacillus NA kombucha kombucha Plant Sugar sugar beverage liquid low acetic mesophilic 1-14 days MAG_367 51.79 4.34 887 3737082 62.63 4653 ['SAMEA104222288', 'SAMEA104307662', 'SAMEA104312991', 'SAMEA104314608', 'SAMEA104314616', 'SAMEA104314677', 'SAMEA104314678', 'SAMEA104312846', 'SAMEA104314602', 'SAMEA104314615', 'SAMEA104216920', 'SAMEA104314679'] ['ERR2102261', 'ERR2126384', 'ERR2133080', 'ERR2135449', 'ERR2135457', 'ERR2135518', 'ERR2135519', 'ERR2401479', 'ERR2401480', 'ERR2401481', 'ERR2401482', 'ERR2437613', 'ERR2437614'] Turkey PRJEB22200 ERP024546 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_367 MAG_367 Pseudomonadota;Alphaproteobacteria;Rhizobiales;Xanthobacteraceae;Afipia NA kombucha kombucha Plant Sugar sugar beverage liquid low acetic mesophilic 1-14 days MAG_368 100 1.09 118 3368268 69.22 58573 ['SAMEA104222288', 'SAMEA104307662', 'SAMEA104312991', 'SAMEA104314608', 'SAMEA104314616', 'SAMEA104314677', 'SAMEA104314678', 'SAMEA104312846', 'SAMEA104314602', 'SAMEA104314615', 'SAMEA104216920', 'SAMEA104314679'] ['ERR2102261', 'ERR2126384', 'ERR2133080', 'ERR2135449', 'ERR2135457', 'ERR2135518', 'ERR2135519', 'ERR2401479', 'ERR2401480', 'ERR2401481', 'ERR2401482', 'ERR2437613', 'ERR2437614'] Turkey PRJEB22200 ERP024546 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ArikanM_2020__ERS1939655__bin.3 ArikanM_2020__ERS1939655__bin.3 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Caldimonas Caldimonas aquatica kombucha kombucha Plant Sugar sugar beverage liquid low acetic mesophilic 1-14 days GCF_007991375.1_ASM799137v1_genomic 100 0.25 113 4241307 60.46 174239 GCF_007991375.1 GCF_007991375.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_007991375.1_ASM799137v1_genomic GCF_007991375.1_ASM799137v1_genomic Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter nitrogenifigens kombucha kombucha_tea Plant Sugar sugar beverage liquid low acetic mesophilic 1-14 days GCF_015244665.1_ASM1524466v1_genomic 100 0 25 3227421 55.81 646346 GCF_015244665.1 GCF_015244665.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_015244665.1_ASM1524466v1_genomic GCF_015244665.1_ASM1524466v1_genomic Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter_A Gluconobacter A japonicus kombucha kombucha_tea Plant Sugar sugar beverage liquid low acetic mesophilic 1-14 days GCF_018491655.1_ASM1849165v1_genomic 100 1 57 3730983 61.68 147351 GCF_018491655.1 GCF_018491655.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 OlgaP_2019__SRR11909888__bin.7 OlgaP_2019__SRR11909888__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter oboediens kombucha kombucha_tea Plant Sugar sugar beverage liquid low acetic mesophilic 1-14 days GCF_900116935.1_Chromosome_genomic 99.48 1.83 1 2607423 39.8 2607423 GCF_900116935.1_Chromosome_genomic GCF_900116935.1_Chromosome_genomic NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_900116935.1_Chromosome_genomic GCF_900116935.1_Chromosome_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus Ligilactobacillus acidipiscis cheese kopanisti kopanisti_cheese Animal Dairy milk cheese solid low lactic mesophilic 1-1.5 months MAG_18 51.71 0.65 566 1553832 42.88 2836 ['SAMN11130137', 'SAMN11130136', 'SAMN11130135', 'SAMN11130134', 'SAMN11130139', 'SAMN11130138'] ['SRR8731938', 'SRR8731939', 'SRR8731940', 'SRR8731941', 'SRR8731942', 'SRR8731943'] China PRJNA527179 SRP188491 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_18 MAG_18 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Moraxella_A Moraxella A sp902506215 koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days MAG_87 99.25 0.01 155 2540783 38.19 25747 ['SAMN11130137', 'SAMN11130136', 'SAMN11130135', 'SAMN11130134', 'SAMN11130139', 'SAMN11130138'] ['SRR8731938', 'SRR8731939', 'SRR8731940', 'SRR8731941', 'SRR8731942', 'SRR8731943'] China PRJNA527179 SRP188491 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_TEAGASC_1__TGS12-29__bin.6 MAG_87 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B faecium koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days MAG_104 52.54 1.72 464 1327728 34.92 3131 ['SAMN11130137', 'SAMN11130136', 'SAMN11130135', 'SAMN11130134', 'SAMN11130139', 'SAMN11130138'] ['SRR8731938', 'SRR8731939', 'SRR8731940', 'SRR8731941', 'SRR8731942', 'SRR8731943'] China PRJNA527179 SRP188491 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_501 MAG_104 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days MAG_129 97.13 0.39 244 1797817 36.27 10933 ['SAMN11130137', 'SAMN11130136', 'SAMN11130135', 'SAMN11130134', 'SAMN11130139', 'SAMN11130138'] ['SRR8731938', 'SRR8731939', 'SRR8731940', 'SRR8731941', 'SRR8731942', 'SRR8731943'] China PRJNA527179 SRP188491 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746979__bin.3 MAG_129 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days MAG_156 79.14 1.97 358 1802041 35.09 6231 ['SAMN11130137', 'SAMN11130136', 'SAMN11130135', 'SAMN11130134', 'SAMN11130139', 'SAMN11130138'] ['SRR8731938', 'SRR8731939', 'SRR8731940', 'SRR8731941', 'SRR8731942', 'SRR8731943'] China PRJNA527179 SRP188491 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_501 MAG_156 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days MAG_168 81.43 2.37 435 1868099 34.91 5096 ['SAMN11130137', 'SAMN11130136', 'SAMN11130135', 'SAMN11130134', 'SAMN11130139', 'SAMN11130138'] ['SRR8731938', 'SRR8731939', 'SRR8731940', 'SRR8731941', 'SRR8731942', 'SRR8731943'] China PRJNA527179 SRP188491 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_501 MAG_168 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days MAG_178 100 0.75 94 2189649 35.17 44426 ['SAMN11130137', 'SAMN11130136', 'SAMN11130135', 'SAMN11130134', 'SAMN11130139', 'SAMN11130138'] ['SRR8731938', 'SRR8731939', 'SRR8731940', 'SRR8731941', 'SRR8731942', 'SRR8731943'] China PRJNA527179 SRP188491 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_178 MAG_178 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days MAG_185 91.37 2.65 349 2491146 55.54 12311 ['SAMN11130137', 'SAMN11130136', 'SAMN11130135', 'SAMN11130134', 'SAMN11130139', 'SAMN11130138'] ['SRR8731938', 'SRR8731939', 'SRR8731940', 'SRR8731941', 'SRR8731942', 'SRR8731943'] China PRJNA527179 SRP188491 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. YouL_2022__SRR13308537__bin.18 YouL_2022__SRR13308537__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia endophytica koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days MAG_581 65.5 1.72 408 2541543 37.67 9489 ['SAMN11130137', 'SAMN11130136', 'SAMN11130135', 'SAMN11130134', 'SAMN11130139', 'SAMN11130138'] ['SRR8731938', 'SRR8731939', 'SRR8731940', 'SRR8731941', 'SRR8731942', 'SRR8731943'] China PRJNA527179 SRP188491 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_CSIC_1__P2235_73323__bin.9 MASTER_WP4_CSIC_1__P2235_73323__bin.9 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days MAG_582 55.17 1.72 241 2514274 43.57 15313 ['SAMN11130137', 'SAMN11130136', 'SAMN11130135', 'SAMN11130134', 'SAMN11130139', 'SAMN11130138'] ['SRR8731938', 'SRR8731939', 'SRR8731940', 'SRR8731941', 'SRR8731942', 'SRR8731943'] China PRJNA527179 SRP188491 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_45 MAG_582 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_D Enterococcus D casseliflavus koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days MAG_583 89.96 2.32 267 1949686 39.88 9646 ['SAMN11130137', 'SAMN11130136', 'SAMN11130135', 'SAMN11130134', 'SAMN11130139', 'SAMN11130138'] ['SRR8731938', 'SRR8731939', 'SRR8731940', 'SRR8731941', 'SRR8731942', 'SRR8731943'] China PRJNA527179 SRP188491 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_001885995.1_ASM188599v1_genomic MAG_583 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_G Enterococcus G italicus koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days MAG_584 95.97 0.88 433 3820885 46.47 12087 ['SAMN11130137', 'SAMN11130136', 'SAMN11130135', 'SAMN11130134', 'SAMN11130139', 'SAMN11130138'] ['SRR8731938', 'SRR8731939', 'SRR8731940', 'SRR8731941', 'SRR8731942', 'SRR8731943'] China PRJNA527179 SRP188491 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. TomarS_2023__SRR15925267__bin.15 TomarS_2023__SRR15925267__bin.15 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus licheniformis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days MAG_585 72.41 5.17 616 2342845 34 4374 ['SAMN11130137', 'SAMN11130136', 'SAMN11130135', 'SAMN11130134', 'SAMN11130139', 'SAMN11130138'] ['SRR8731938', 'SRR8731939', 'SRR8731940', 'SRR8731941', 'SRR8731942', 'SRR8731943'] China PRJNA527179 SRP188491 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_501 MAG_585 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days MAG_586 97.7 0.66 193 2676614 70.91 26567 ['SAMN11130137', 'SAMN11130136', 'SAMN11130135', 'SAMN11130134', 'SAMN11130139', 'SAMN11130138'] ['SRR8731938', 'SRR8731939', 'SRR8731940', 'SRR8731941', 'SRR8731942', 'SRR8731943'] China PRJNA527179 SRP188491 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MASTER_WP4_FFoQSI_2__VB16-22__bin.7 MAG_586 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Kocuria Kocuria salsicia koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days MAG_587 99.06 1.99 149 2383770 41.86 33577 ['SAMN11130137', 'SAMN11130136', 'SAMN11130135', 'SAMN11130134', 'SAMN11130139', 'SAMN11130138'] ['SRR8731938', 'SRR8731939', 'SRR8731940', 'SRR8731941', 'SRR8731942', 'SRR8731943'] China PRJNA527179 SRP188491 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YaoG_2017__NM17-1__bin.7 61.91654448 1.893939394 152 1434543 35.21 16074 SRS1651025 SRR4075511 China PRJNA340315 SRP083102 NCBI Yao, G., Yu, J., Hou, Q., Hui, W., Liu, W., Kwok, L.-Y., Menghe, B., Sun, T., Zhang, H., and Zhang, W. (2017). A Perspective Study of Koumiss Microbiome by Metagenomics Analysis Based on Single-Cell Amplification Technique. Front. Microbiol. 8, 165. MAG_501 YaoG_2017__NM17-1__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YaoG_2017__NM17-1__bin.3 55.6 0 470 7267901 39.05 21613 SRS1651025 SRR4075511 China PRJNA340315 SRP083102 NCBI Yao, G., Yu, J., Hou, Q., Hui, W., Liu, W., Kwok, L.-Y., Menghe, B., Sun, T., Zhang, H., and Zhang, W. (2017). A Perspective Study of Koumiss Microbiome by Metagenomics Analysis Based on Single-Cell Amplification Technique. Front. Microbiol. 8, 165. ODFM-BA-A-0118-001_Brettanomyces_anomalus_YV396 ODFM-BA-A-0118-001_Brettanomyces_anomalus_YV396 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Brettanomyces Brettanomyces anomalus koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YaoG_2017__NM17-3__bin.1 62.85443723 0.820707071 130 1190654 35.32 13417 SRS1651026 SRR4075513 China PRJNA340315 SRP083102 NCBI Yao, G., Yu, J., Hou, Q., Hui, W., Liu, W., Kwok, L.-Y., Menghe, B., Sun, T., Zhang, H., and Zhang, W. (2017). A Perspective Study of Koumiss Microbiome by Metagenomics Analysis Based on Single-Cell Amplification Technique. Front. Microbiol. 8, 165. MAG_501 FontanaF_2023__SRR20746855__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YaoG_2017__NM18-1__bin.4 70.05952381 2.467532468 123 1256859 36.25 15999 SRS1651031 SRR4075514 China PRJNA340315 SRP083102 NCBI Yao, G., Yu, J., Hou, Q., Hui, W., Liu, W., Kwok, L.-Y., Menghe, B., Sun, T., Zhang, H., and Zhang, W. (2017). A Perspective Study of Koumiss Microbiome by Metagenomics Analysis Based on Single-Cell Amplification Technique. Front. Microbiol. 8, 165. FontanaF_2023__SRR20746979__bin.3 YaoG_2017__NM18-1__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YaoG_2017__NM18-1__bin.1 72 0 594 9157315 38.8 21236 SRS1651031 SRR4075514 China PRJNA340315 SRP083102 NCBI Yao, G., Yu, J., Hou, Q., Hui, W., Liu, W., Kwok, L.-Y., Menghe, B., Sun, T., Zhang, H., and Zhang, W. (2017). A Perspective Study of Koumiss Microbiome by Metagenomics Analysis Based on Single-Cell Amplification Technique. Front. Microbiol. 8, 165. ODFM-BA-A-0118-001_Brettanomyces_anomalus_YV396 ODFM-BA-A-0118-001_Brettanomyces_anomalus_YV396 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Brettanomyces Brettanomyces anomalus koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YaoG_2017__NM18-2__bin.5 56.03448276 3.448275862 165 1231409 35.79 9774 SRS1651030 SRR4075515 China PRJNA340315 SRP083102 NCBI Yao, G., Yu, J., Hou, Q., Hui, W., Liu, W., Kwok, L.-Y., Menghe, B., Sun, T., Zhang, H., and Zhang, W. (2017). A Perspective Study of Koumiss Microbiome by Metagenomics Analysis Based on Single-Cell Amplification Technique. Front. Microbiol. 8, 165. MAG_178 MAG_178 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YaoG_2017__NM18-2__bin.10 75.5 0 682 9805875 38.99 21284 SRS1651030 SRR4075515 China PRJNA340315 SRP083102 NCBI Yao, G., Yu, J., Hou, Q., Hui, W., Liu, W., Kwok, L.-Y., Menghe, B., Sun, T., Zhang, H., and Zhang, W. (2017). A Perspective Study of Koumiss Microbiome by Metagenomics Analysis Based on Single-Cell Amplification Technique. Front. Microbiol. 8, 165. ODFM-BA-A-0118-001_Brettanomyces_anomalus_YV396 ODFM-BA-A-0118-001_Brettanomyces_anomalus_YV396 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Brettanomyces Brettanomyces anomalus koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YaoG_2017__NM20-1__bin.4 59.15310339 0.324675325 75 789872 36.33 17177 SRS1651035 SRR4075521 China PRJNA340315 SRP083102 NCBI Yao, G., Yu, J., Hou, Q., Hui, W., Liu, W., Kwok, L.-Y., Menghe, B., Sun, T., Zhang, H., and Zhang, W. (2017). A Perspective Study of Koumiss Microbiome by Metagenomics Analysis Based on Single-Cell Amplification Technique. Front. Microbiol. 8, 165. FontanaF_2023__SRR20746979__bin.3 MAG_129 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YaoG_2017__NM20-1__bin.5 67 0 495 8461498 39.53 25349 SRS1651035 SRR4075521 China PRJNA340315 SRP083102 NCBI Yao, G., Yu, J., Hou, Q., Hui, W., Liu, W., Kwok, L.-Y., Menghe, B., Sun, T., Zhang, H., and Zhang, W. (2017). A Perspective Study of Koumiss Microbiome by Metagenomics Analysis Based on Single-Cell Amplification Technique. Front. Microbiol. 8, 165. ODFM-BA-A-0118-001_Brettanomyces_anomalus_YV396 ODFM-BA-A-0118-001_Brettanomyces_anomalus_YV396 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Brettanomyces Brettanomyces anomalus koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YaoG_2017__NM20-2__bin.8 74.4 0 571 9240517 39 26721 SRS1651036 SRR4075522 China PRJNA340315 SRP083102 NCBI Yao, G., Yu, J., Hou, Q., Hui, W., Liu, W., Kwok, L.-Y., Menghe, B., Sun, T., Zhang, H., and Zhang, W. (2017). A Perspective Study of Koumiss Microbiome by Metagenomics Analysis Based on Single-Cell Amplification Technique. Front. Microbiol. 8, 165. ODFM-BA-A-0118-001_Brettanomyces_anomalus_YV396 ODFM-BA-A-0118-001_Brettanomyces_anomalus_YV396 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Brettanomyces Brettanomyces anomalus koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YaoG_2017__NM20-3__bin.3 51.72413793 0 47 424463 36.54 13091 SRS1651037 SRR4075523 China PRJNA340315 SRP083102 NCBI Yao, G., Yu, J., Hou, Q., Hui, W., Liu, W., Kwok, L.-Y., Menghe, B., Sun, T., Zhang, H., and Zhang, W. (2017). A Perspective Study of Koumiss Microbiome by Metagenomics Analysis Based on Single-Cell Amplification Technique. Front. Microbiol. 8, 165. FontanaF_2023__SRR20746979__bin.3 MAG_129 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YaoG_2017__NM20-3__bin.4 71.2 0 532 8886610 39.46 23659 SRS1651037 SRR4075523 China PRJNA340315 SRP083102 NCBI Yao, G., Yu, J., Hou, Q., Hui, W., Liu, W., Kwok, L.-Y., Menghe, B., Sun, T., Zhang, H., and Zhang, W. (2017). A Perspective Study of Koumiss Microbiome by Metagenomics Analysis Based on Single-Cell Amplification Technique. Front. Microbiol. 8, 165. ODFM-BA-A-0118-001_Brettanomyces_anomalus_YV396 ODFM-BA-A-0118-001_Brettanomyces_anomalus_YV396 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Brettanomyces Brettanomyces anomalus koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YaoG_2017__NM21-1__bin.6 63.1 0.2 443 7917080 39.18 30270 SRS1651038 SRR4075524 China PRJNA340315 SRP083102 NCBI Yao, G., Yu, J., Hou, Q., Hui, W., Liu, W., Kwok, L.-Y., Menghe, B., Sun, T., Zhang, H., and Zhang, W. (2017). A Perspective Study of Koumiss Microbiome by Metagenomics Analysis Based on Single-Cell Amplification Technique. Front. Microbiol. 8, 165. ODFM-BA-A-0118-001_Brettanomyces_anomalus_YV396 ODFM-BA-A-0118-001_Brettanomyces_anomalus_YV396 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Brettanomyces Brettanomyces anomalus koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YaoG_2017__NM21-2__bin.9 70.30844156 0 78 1128521 36.62 24185 SRS1651039 SRR4075525 China PRJNA340315 SRP083102 NCBI Yao, G., Yu, J., Hou, Q., Hui, W., Liu, W., Kwok, L.-Y., Menghe, B., Sun, T., Zhang, H., and Zhang, W. (2017). A Perspective Study of Koumiss Microbiome by Metagenomics Analysis Based on Single-Cell Amplification Technique. Front. Microbiol. 8, 165. FontanaF_2023__SRR20746979__bin.3 MAG_129 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YaoG_2017__NM21-2__bin.5 54.1 0 452 6587589 38.57 22289 SRS1651039 SRR4075525 China PRJNA340315 SRP083102 NCBI Yao, G., Yu, J., Hou, Q., Hui, W., Liu, W., Kwok, L.-Y., Menghe, B., Sun, T., Zhang, H., and Zhang, W. (2017). A Perspective Study of Koumiss Microbiome by Metagenomics Analysis Based on Single-Cell Amplification Technique. Front. Microbiol. 8, 165. ODFM-BA-A-0118-001_Brettanomyces_anomalus_YV396 ODFM-BA-A-0118-001_Brettanomyces_anomalus_YV396 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Brettanomyces Brettanomyces anomalus koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YaoG_2017__NM21-3__bin.10 63.4 0 457 7956867 39.04 25750 SRS1651040 SRR4075526 China PRJNA340315 SRP083102 NCBI Yao, G., Yu, J., Hou, Q., Hui, W., Liu, W., Kwok, L.-Y., Menghe, B., Sun, T., Zhang, H., and Zhang, W. (2017). A Perspective Study of Koumiss Microbiome by Metagenomics Analysis Based on Single-Cell Amplification Technique. Front. Microbiol. 8, 165. ODFM-BA-A-0118-001_Brettanomyces_anomalus_YV396 ODFM-BA-A-0118-001_Brettanomyces_anomalus_YV396 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Brettanomyces Brettanomyces anomalus koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308520__bin.11 71.99 1.16 57 1430388 39.1 46295 SAMN17165124 SRR13308520 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 Wy2_bin.circ.1 YouL_2022__SRR13308526__bin.22 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308520__bin.13 65.75 0.27 64 1678240 42.05 47242 SAMN17165124 SRR13308520 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308520__bin.14 84.6 0.04 29 1460791 53.96 87940 SAMN17165124 SRR13308520 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 GCF_009428965.1_ASM942896v1_genomic GCF_009428965.1_ASM942896v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus pontis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308520__bin.15 99.99 0.61 280 2494837 34.86 16144 SAMN17165124 SRR13308520 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MAG_501 YouL_2022__SRR13308525__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308520__bin.20 84.24 4.79 399 2001216 53.41 6028 SAMN17165124 SRR13308520 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 SRR10454511C706_acetobacter_assembly YouL_2022__SRR13308520__bin.20 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308520__bin.3 62.09 0 28 1094499 38.24 192422 SAMN17165124 SRR13308520 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 CM_UNINA_FFOOD__FFOOD_418__bin.8 CM_UNINA_FFOOD__FFOOD_418__bin.8 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus petauri koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308520__bin.4 98.85 0.05 61 1928143 36.95 56763 SAMN17165124 SRR13308520 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 YouL_2022__SRR13308520__bin.4 YouL_2022__SRR13308520__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308520__bin.7 84.52 0.26 280 1993227 43.76 9881 SAMN17165124 SRR13308520 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 GCF_002276885.1_ASM227688v1_genomic GCF_002276885.1_ASM227688v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parakefiri koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308521__bin.12 73.69 4.36 621 2094197 31.23 3727 SAMN17165123 SRR13308521 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 YouL_2022__SRR13308521__bin.12 YouL_2022__SRR13308521__bin.12 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus hominis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308521__bin.17 81.39 1.63 431 2620349 41.54 8474 SAMN17165123 SRR13308521 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MASTER_WP4_FFoQSI_2__VB11-26__bin.7 YouL_2022__SRR13308521__bin.17 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter johnsonii koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308521__bin.25 93.92 0.11 89 2153995 41.89 42749 SAMN17165123 SRR13308521 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308521__bin.3 68.51 1.27 336 1571910 56.9 5630 SAMN17165123 SRR13308521 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 YouL_2022__SRR13308537__bin.18 YouL_2022__SRR13308521__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia endophytica koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308521__bin.31 78.37 0.13 25 1527278 38.36 192415 SAMN17165123 SRR13308521 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 CM_UNINA_FFOOD__FFOOD_418__bin.8 CM_UNINA_FFOOD__FFOOD_418__bin.8 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus petauri koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308521__bin.34 99.9 1.95 106 2479833 34.85 61695 SAMN17165123 SRR13308521 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308521__bin.39 54.72 0.46 174 1442479 43.97 11316 SAMN17165123 SRR13308521 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 GCF_002276885.1_ASM227688v1_genomic GCF_002276885.1_ASM227688v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parakefiri koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308522__bin.5 56.18 0.07 59 884626 38.22 25087 SAMN17165122 SRR13308522 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308523__bin.1 50.62 2.55 655 3118671 57.11 5576 SAMN17165121 SRR13308523 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 AlvarezOrdonezA_xxxx__Q02-30__bin.22 YouL_2022__SRR13308523__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella ornithinolytica koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308523__bin.13 67.23 0.2 52 1593949 42.06 51447 SAMN17165121 SRR13308523 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308523__bin.15 77.48 0.06 67 1439122 37.23 41204 SAMN17165121 SRR13308523 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 YouL_2022__SRR13308520__bin.4 YouL_2022__SRR13308524__bin.34 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308523__bin.20 72.09 0.69 353 1588343 44.06 4954 SAMN17165121 SRR13308523 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MASTER_WP4_CSIC_2__P2603__bin.2 YouL_2022__SRR13308523__bin.20 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Moraxella_A Moraxella A sp902506215 koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308523__bin.29 89.56 1.1 101 1741470 37.62 32325 SAMN17165121 SRR13308523 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308523__bin.3 63.85 0.64 265 1541641 57.38 6881 SAMN17165121 SRR13308523 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 YouL_2022__SRR13308523__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308523__bin.34 51.17 0.11 5 889934 64.14 230064 SAMN17165121 SRR13308523 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 CM_UNINA_FFOOD__FFOOD_296__bin.3 CM_UNINA_FFOOD__FFOOD_296__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308523__bin.52 91.55 2.81 93 1650790 39.36 25394 SAMN17165121 SRR13308523 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 YouL_2022__SRR13308523__bin.52 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308523__bin.53 93.4 0.89 92 1859361 40.41 36521 SAMN17165121 SRR13308523 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 FontanaF_2023__SRR20746866__bin.6 FontanaF_2023__SRR20746866__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308523__bin.54 52.74 2.91 136 2262360 51.37 23273 SAMN17165121 SRR13308523 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 LeechJ_2020__ERS3967688__bin.2 YouL_2022__SRR13308523__bin.54 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308523__bin.57 89.41 0.47 110 1807634 38.1 32292 SAMN17165121 SRR13308523 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 CM_UNINA_FFOOD__FFOOD_418__bin.8 CM_UNINA_FFOOD__FFOOD_418__bin.8 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus petauri koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308523__bin.58 94.72 3.65 143 2745909 37.98 34052 SAMN17165121 SRR13308523 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 FontanaF_2023__SRR20746834__bin.2 FontanaF_2023__SRR20746834__bin.2 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B durans koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308523__bin.65 57.58 0.2 383 1432457 38.31 4143 SAMN17165121 SRR13308523 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MASTER_WP4_TEAGASC_1__TGS12-29__bin.6 MASTER_WP4_TEAGASC_1__TGS12-29__bin.6 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B faecium koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308523__bin.66 65.4 0.03 349 1929940 36.15 6823 SAMN17165121 SRR13308523 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 LeechJ_2020__ERS3967702__bin.3 YouL_2022__SRR13308523__bin.66 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Kurthia Kurthia gibsonii koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308523__bin.9 51.9 0.66 73 2445301 58.02 49231 SAMN17165121 SRR13308523 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 EBC_134.7 YouL_2022__SRR13308523__bin.9 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella variicola koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308524__bin.24 50.16 0.04 15 1073185 34.9 135667 SAMN17165120 SRR13308524 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308524__bin.27 59.51 0.12 43 1025886 39.84 38872 SAMN17165120 SRR13308524 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 Wy2_bin.circ.1 MAG_169 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308524__bin.34 99.44 0.18 50 1843446 36.93 68139 SAMN17165120 SRR13308524 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 YouL_2022__SRR13308520__bin.4 YouL_2022__SRR13308524__bin.34 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308524__bin.37 70.89 0.29 126 2398508 41.2 38653 SAMN17165120 SRR13308524 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MASTER_WP4_FFoQSI_2__VB11-26__bin.7 YouL_2022__SRR13308524__bin.37 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter johnsonii koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308524__bin.4 74.06 2.14 85 1986133 57.44 109575 SAMN17165120 SRR13308524 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 SRR10454486C2703_ghanensis_assembly YouL_2022__SRR13308529__bin.8 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter ghanensis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308524__bin.43 85.43 0.01 75 1953539 56.12 40255 SAMN17165120 SRR13308524 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 YouL_2022__SRR13308537__bin.18 YouL_2022__SRR13308524__bin.43 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia endophytica koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308524__bin.47 54.63 0.19 84 2548215 58.18 47863 SAMN17165120 SRR13308524 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MAG_19 MAG_19 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella pneumoniae koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308524__bin.49 74.91 2.98 108 3265577 53.3 47799 SAMN17165120 SRR13308524 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MASTER_WP4_CSIC_2__P2596__bin.6 MASTER_WP4_UNINA_2__O-25.1__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Kluyvera Kluyvera intermedia koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308524__bin.8 92.17 4.66 159 2842893 40.09 29395 SAMN17165120 SRR13308524 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 YouL_2022__SRR13308541__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308525__bin.10 60.98 0.19 51 1543762 42.03 63917 SAMN17165119 SRR13308525 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308525__bin.12 61.55 1.06 103 1287180 37.38 21704 SAMN17165119 SRR13308525 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MAG_S8 YouL_2022__SRR13308525__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308525__bin.14 81.34 2.4 253 1869976 43.82 9917 SAMN17165119 SRR13308525 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 GCF_002276885.1_ASM227688v1_genomic GCF_002276885.1_ASM227688v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parakefiri koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308525__bin.7 100 0.06 42 2360314 34.97 124326 SAMN17165119 SRR13308525 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MAG_501 YouL_2022__SRR13308525__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308526__bin.21 55.56 1.84 41 1387107 57.12 72474 SAMN17165118 SRR13308526 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 SRR10454486C2703_ghanensis_assembly YouL_2022__SRR13308529__bin.8 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter ghanensis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308526__bin.22 78.46 0.22 51 1415301 38.91 45148 SAMN17165118 SRR13308526 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 Wy2_bin.circ.1 YouL_2022__SRR13308526__bin.22 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308526__bin.24 88.99 4.01 218 4571391 54.79 36548 SAMN17165118 SRR13308526 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 YouL_2022__SRR13308526__bin.24 YouL_2022__SRR13308526__bin.24 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter Enterobacter ludwigii koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308526__bin.37 97.3 0.63 64 2066214 36.59 50706 SAMN17165118 SRR13308526 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 YouL_2022__SRR13308520__bin.4 YouL_2022__SRR13308524__bin.34 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308526__bin.43 63.91 1.53 465 1511234 37.55 3438 SAMN17165118 SRR13308526 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 CM_UNINA_FFOOD__FFOOD_418__bin.8 YouL_2022__SRR13308526__bin.43 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus petauri koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308526__bin.5 53.63 0.07 26 920486 53.53 51881 SAMN17165118 SRR13308526 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 GCF_009428965.1_ASM942896v1_genomic GCF_009428965.1_ASM942896v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus pontis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308526__bin.8 99.95 0.21 73 1905640 37.62 75890 SAMN17165118 SRR13308526 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308526__bin.9 67.58 3.43 79 2917846 53.01 52792 SAMN17165118 SRR13308526 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MASTER_WP4_CSIC_2__P2596__bin.6 MASTER_WP4_UNINA_2__O-25.1__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Kluyvera Kluyvera intermedia koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308527__bin.10 59.99 0.33 46 1395939 58.21 70898 SAMN17165137 SRR13308527 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 SRR10454486C2703_ghanensis_assembly YouL_2022__SRR13308529__bin.8 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter ghanensis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308527__bin.15 89.59 0.35 208 1971595 43.76 13035 SAMN17165137 SRR13308527 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 GCF_002276885.1_ASM227688v1_genomic GCF_002276885.1_ASM227688v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parakefiri koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308528__bin.1 85.97 0.26 109 2046533 35.07 35235 SAMN17165136 SRR13308528 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308528__bin.11 64.25 0.23 22 1070429 54.07 60651 SAMN17165136 SRR13308528 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 GCF_009428965.1_ASM942896v1_genomic GCF_009428965.1_ASM942896v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus pontis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308528__bin.16 85.93 1.94 529 2236621 39.29 4972 SAMN17165136 SRR13308528 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 YouL_2022__SRR13308528__bin.16 YouL_2022__SRR13308528__bin.16 Bacteroidota;Bacteroidia;Flavobacteriales;Weeksellaceae;Epilithonimonas Epilithonimonas bovis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308528__bin.19 59.36 0.05 31 1093603 39.33 55178 SAMN17165136 SRR13308528 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 Wy2_bin.circ.1 MAG_169 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308528__bin.21 85.46 0.22 94 1955513 56.65 33547 SAMN17165136 SRR13308528 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 YouL_2022__SRR13308537__bin.18 YouL_2022__SRR13308524__bin.43 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia endophytica koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308528__bin.22 57.19 3.53 561 1699583 70.81 3229 SAMN17165136 SRR13308528 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MASTER_WP4_FFoQSI_2__VB16-22__bin.7 YouL_2022__SRR13308528__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Kocuria Kocuria salsicia koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308528__bin.4 71.84 1.84 375 1674883 44.05 5030 SAMN17165136 SRR13308528 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 GCF_002276885.1_ASM227688v1_genomic YouL_2022__SRR13308528__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parakefiri koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308529__bin.1 83.85 1.59 68 1469631 54.29 38347 SAMN17165135 SRR13308529 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 GCF_009428965.1_ASM942896v1_genomic GCF_009428965.1_ASM942896v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus pontis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308529__bin.12 81.58 2.29 383 1972504 54.09 6076 SAMN17165135 SRR13308529 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MortensenS_xxxx__WK032-1-L-48h-03B6_S34__bin.2 YouL_2022__SRR13308529__bin.12 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter pasteurianus koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308529__bin.13 83.09 1.26 291 1992053 43.68 8990 SAMN17165135 SRR13308529 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 GCF_002276885.1_ASM227688v1_genomic GCF_002276885.1_ASM227688v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parakefiri koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308529__bin.15 59.52 0.08 7 1474392 55.46 347119 SAMN17165135 SRR13308529 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 YouL_2022__SRR13308537__bin.18 MASTER_WP4_UNINA_2__I-30__bin.19 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia endophytica koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308529__bin.8 94.18 2.91 40 2246145 57.62 91408 SAMN17165135 SRR13308529 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 SRR10454486C2703_ghanensis_assembly YouL_2022__SRR13308529__bin.8 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter ghanensis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308530__bin.11 55.91 0.08 51 1442628 41.97 45496 SAMN17165117 SRR13308530 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308531__bin.1 74.04 1.13 528 1836865 44.05 3808 SAMN17165134 SRR13308531 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MASTER_WP4_CSIC_2__P2603__bin.2 YouL_2022__SRR13308531__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Moraxella_A Moraxella A sp902506215 koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308531__bin.11 83.44 0 57 1561391 39.21 50605 SAMN17165134 SRR13308531 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 Wy2_bin.circ.1 MAG_169 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308531__bin.12 76.67 0.54 49 2161430 37.17 87447 SAMN17165134 SRR13308531 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MASTER_WP4_CSIC_1__P2235_73323__bin.9 MAG_558 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308531__bin.18 79.27 0.54 136 2016037 38.35 31886 SAMN17165134 SRR13308531 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MASTER_WP4_TEAGASC_1__TGS12-29__bin.6 MAG_87 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B faecium koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308531__bin.4 54.53 0.03 56 915491 37.51 32672 SAMN17165134 SRR13308531 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308532__bin.18 57.68 0.36 46 1244180 35.21 49806 SAMN17165133 SRR13308532 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308532__bin.3 54.2 0.1 14 1534772 53.87 196407 SAMN17165133 SRR13308532 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 SRR10454491C1008_acetobacter_assembly WalshL_xxxx__I1__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308532__bin.8 66.64 0.12 22 1147249 37.71 121559 SAMN17165133 SRR13308532 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308533__bin.1 78.6 4.52 620 1962561 59.36 3434 SAMN17165132 SRR13308533 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MortensenS_xxxx__WK067-1-L-48h-05C1_S71__bin.5 YouL_2022__SRR13308533__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter malorum koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308533__bin.4 85.14 0.92 269 2020404 43.55 9944 SAMN17165132 SRR13308533 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 GCF_002276885.1_ASM227688v1_genomic GCF_002276885.1_ASM227688v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parakefiri koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308534__bin.12 87.24 4.13 261 2229182 53.39 10909 SAMN17165131 SRR13308534 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MortensenS_xxxx__WK032-1-L-48h-03B6_S34__bin.2 MAG_349 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter pasteurianus koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308534__bin.20 98.06 2.43 339 4679963 30.07 23463 SAMN17165131 SRR13308534 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 YouL_2022__SRR13308534__bin.20 YouL_2022__SRR13308534__bin.20 Bacillota;Clostridia;Clostridiales;Clostridiaceae;Clostridium_T Clostridium T intestinale koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308534__bin.26 59.71 2.98 108 1225298 36.74 16880 SAMN17165131 SRR13308534 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MAG_S8 YouL_2022__SRR13308534__bin.26 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308534__bin.8 93.85 0.99 61 2184671 35.07 65346 SAMN17165131 SRR13308534 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308535__bin.1 50.71 0.26 32 1204512 42.16 60991 SAMN17165130 SRR13308535 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308537__bin.10 61.85 0.79 376 1557311 43.97 4742 SAMN17165128 SRR13308537 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 GCF_002276885.1_ASM227688v1_genomic YouL_2022__SRR13308537__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parakefiri koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308537__bin.18 98.25 0.58 167 2280448 56.35 21537 SAMN17165128 SRR13308537 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 YouL_2022__SRR13308537__bin.18 YouL_2022__SRR13308537__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia endophytica koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308537__bin.30 99.78 4.01 82 1946732 35.43 44752 SAMN17165128 SRR13308537 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MAG_178 MAG_178 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308537__bin.7 97.24 0.32 79 2342697 34.98 73329 SAMN17165128 SRR13308537 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308538__bin.4 62.78 0.06 125 1228407 43.63 14788 SAMN17165127 SRR13308538 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 GCF_002276885.1_ASM227688v1_genomic GCF_002276885.1_ASM227688v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parakefiri koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308539__bin.1 99.54 0.06 55 1871446 38.23 61617 SAMN17165126 SRR13308539 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 CM_UNINA_FFOOD__FFOOD_418__bin.8 CM_UNINA_FFOOD__FFOOD_418__bin.8 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus petauri koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308540__bin.23 84.08 0.33 72 1651743 39.04 32043 SAMN17165125 SRR13308540 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 Wy2_bin.circ.1 MAG_169 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308540__bin.26 99.8 1.1 75 2393976 38.32 46223 SAMN17165125 SRR13308540 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MASTER_WP4_TEAGASC_1__TGS12-29__bin.6 MASTER_WP4_UNINA_1__FO013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B faecium koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308540__bin.3 62.77 2.19 394 1985896 41.8 5691 SAMN17165125 SRR13308540 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MASTER_WP4_FFoQSI_2__VB11-26__bin.7 YouL_2022__SRR13308540__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter johnsonii koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308540__bin.9 74.01 0.04 319 1773292 43.98 6685 SAMN17165125 SRR13308540 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MASTER_WP4_CSIC_2__P2603__bin.2 YouL_2022__SRR13308540__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Moraxella_A Moraxella A sp902506215 koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308541__bin.13 81.44 0.14 88 1469180 39.14 30547 SAMN17165116 SRR13308541 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 Wy2_bin.circ.1 MAG_169 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308541__bin.16 55.55 2.33 29 1206484 35.32 126728 SAMN17165116 SRR13308541 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MAG_501 YouL_2022__SRR13308525__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308541__bin.19 91.24 1.27 177 1878100 37.07 17852 SAMN17165116 SRR13308541 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 YouL_2022__SRR13308520__bin.4 YouL_2022__SRR13308524__bin.34 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308541__bin.22 86.62 3.61 718 4513951 56.69 9038 SAMN17165116 SRR13308541 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 FontanaF_2023__SRR20746851__bin.6 FontanaF_2023__SRR20746851__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella grimontii koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308541__bin.26 59.01 0.02 109 1025141 37.56 14780 SAMN17165116 SRR13308541 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MAG_S8 WalshL_xxxx__L2__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308541__bin.27 80.24 0.44 196 1873049 43.86 13563 SAMN17165116 SRR13308541 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 GCF_002276885.1_ASM227688v1_genomic GCF_002276885.1_ASM227688v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parakefiri koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308541__bin.6 88.25 1.19 137 2608335 40.05 32531 SAMN17165116 SRR13308541 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 YouL_2022__SRR13308541__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308541__bin.8 65.98 0.35 46 1611244 42.03 55175 SAMN17165116 SRR13308541 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308542__bin.1 55.13 0.04 101 1496319 34.67 26464 SAMN17165115 SRR13308542 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MAG_501 YouL_2022__SRR13308542__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308542__bin.14 53.23 0.65 226 1001166 37.25 5206 SAMN17165115 SRR13308542 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MAG_S8 YouL_2022__SRR13308525__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308542__bin.15 89.65 3.55 165 2561010 40.01 27214 SAMN17165115 SRR13308542 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 YouL_2022__SRR13308541__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308542__bin.17 71.63 0.08 145 1528424 43.75 14531 SAMN17165115 SRR13308542 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 GCF_002276885.1_ASM227688v1_genomic GCF_002276885.1_ASM227688v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parakefiri koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308542__bin.19 76.95 0.2 156 1251438 43.81 11617 SAMN17165115 SRR13308542 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 ODFM-BA-A-0094-002_Leuconostoc_lactis_WIKIM21 MASTER_WP4_CSIC_2__P2559__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis A koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308542__bin.20 52.33 2.95 267 1265630 53.88 5410 SAMN17165115 SRR13308542 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 MortensenS_xxxx__WK032-1-L-48h-03B6_S34__bin.2 YouL_2022__SRR13308542__bin.20 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter pasteurianus koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days YouL_2022__SRR13308542__bin.6 86.73 3.2 207 1596805 39.19 10024 SAMN17165115 SRR13308542 China PRJNA687995 SRP299624 NCBI You, L., Yang, C., Jin, H., Kwok, L.-Y., Sun, Z., & Zhang, H. (2022). Metagenomic features of traditional fermented milk products. LWT, 155, 112945. https://doi.org/10.1016/j.lwt.2021.112945 Wy2_bin.circ.1 YouL_2022__SRR13308526__bin.22 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus koumiss koumiss Animal Dairy milk horse beverage liquid low lactic mesophilic 1-2 days LeechJ_xxxx__AF05__bin.2 97.47942387 0.308641975 178 1788607 37.26 17724 SAMN39472425 SRR27593207 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KharnaiorP_2023__SRR22859379__bin.8 LeechJ_xxxx__AF05__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus kunu kunu Plant Grain millet beverage liquid low lactic mesophilic 1-3 days LeechJ_xxxx__AF20__bin.5 51.94154661 0.655737705 200 637070 54.47 3302 SAMN39472439 SRR27593231 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum kunu kunu Plant Grain millet beverage liquid low lactic mesophilic 1-3 days LeechJ_xxxx__AF33__bin.1 96.99453552 0.819672131 189 1646551 53.33 12691 SAMN39472452 SRR27593216 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF33__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum kunu kunu Plant Grain millet beverage liquid low lactic mesophilic 1-3 days LeechJ_xxxx__AF86__bin.9 66.84952978 0 194 1477321 37.5 10603 SAMN39472504 SRR27593155 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_104__bin.4 LeechJ_xxxx__AF86__bin.9 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus macedonicus kunu kunu Plant Grain millet beverage liquid low lactic mesophilic 1-3 days LeechJ_xxxx__AF92__bin.2 87.32106339 4.345603272 256 1679028 45.03 9900 SAMN39472509 SRR27593182 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_004771075.1_ASM477107v1_genomic LeechJ_xxxx__AF92__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella confusa kunu kunu Plant Grain millet beverage liquid low lactic mesophilic 1-3 days LeechJ_xxxx__AF92__bin.3 96.44194757 1.5917603 141 1606508 37.71 17904 SAMN39472509 SRR27593182 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 WalshAM_2017__ERS1739834__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius kunu kunu Plant Grain millet beverage liquid low lactic mesophilic 1-3 days LeechJ_xxxx__AF94__bin.1 98.87640449 0 53 1859863 37.48 50829 SAMN39472511 SRR27593178 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 LeechJ_xxxx__AF94__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius kunu kunu Plant Grain millet beverage liquid low lactic mesophilic 1-3 days LeechJ_xxxx__AF94__bin.3 90.58441558 0 40 1542992 50.54 65157 SAMN39472511 SRR27593178 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic LeechJ_xxxx__AF94__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii kunu kunu Plant Grain millet beverage liquid low lactic mesophilic 1-3 days LeechJ_xxxx__AF94__bin.2 92.18317972 0.806451613 467 2080926 28.69 5584 SAMN39472511 SRR27593178 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF94__bin.2 LeechJ_xxxx__AF94__bin.2 Bacillota;Clostridia;Clostridiales;Clostridiaceae;Sarcina Sarcina perfringens kunu kunu Plant Grain millet beverage liquid low lactic mesophilic 1-3 days LeechJ_2020__ERS3967690__bin.4 99.50248756 0.497512438 28 3301388 55.71 190706 ERS3967690 ERR4757805 Russia PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967690__bin.4 LeechJ_2020__ERS3967690__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter_A Gluconobacter A sp014132155 kvass kvass Plant Grain rye beverage liquid low lactic mesophilic 3-7 days LeechJ_2020__ERS3967690__bin.2 98.41269841 1.234567901 142 1866372 37.62 20250 ERS3967690 ERR4757805 Russia PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kvass kvass Plant Grain rye beverage liquid low lactic mesophilic 3-7 days LeechJ_2020__ERS3967690__bin.1 98.9375 0.625 107 3064638 40.09 43167 ERS3967690 ERR4757805 Russia PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 LeechJ_2020__ERS3967690__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans kvass kvass Plant Grain rye beverage liquid low lactic mesophilic 3-7 days LeechJ_2020__ERS3967690__bin.9 90.64473575 2.63175812 271 2018449 53.16 10040 ERS3967690 ERR4757805 Russia PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. G_24_1A_oryzifermentans_assembly LeechJ_2020__ERS3967690__bin.9 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter oryzifermentans kvass kvass Plant Grain rye beverage liquid low lactic mesophilic 3-7 days LeechJ_2020__ERS3967690__bin.3 68.34665335 0.76037447 846 2893151 60.03 3821 ERS3967690 ERR4757805 Russia PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967690__bin.3 LeechJ_2020__ERS3967690__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E peli kvass kvass Plant Grain rye beverage liquid low lactic mesophilic 3-7 days LeechJ_2020__ERS3967690__bin.8 66.55172414 0 587 2570273 60.29 5110 ERS3967690 ERR4757805 Russia PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.5 LeechJ_2020__ERS3967690__bin.8 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter albidus kvass kvass Plant Grain rye beverage liquid low lactic mesophilic 3-7 days LeechJ_2020__ERS3967707__bin.11 82.48847926 1.058201058 59 1417761 37.95 45031 ERS3967707 ERR4757822 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kvass kvass Plant Grain rye beverage liquid low lactic mesophilic 3-7 days LeechJ_2020__ERS3967707__bin.7 99.89082969 0.436681223 86 1764563 38.86 40534 ERS3967707 ERR4757822 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. Wy2_bin.circ.1 MAG_392 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus kvass kvass Plant Grain rye beverage liquid low lactic mesophilic 3-7 days LeechJ_2020__ERS3967707__bin.10 93.75 1.358695652 76 1893979 40.91 48673 ERS3967707 ERR4757822 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 LeechJ_2020__ERS3967707__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei kvass kvass Plant Grain rye beverage liquid low lactic mesophilic 3-7 days LeechJ_2020__ERS3967707__bin.4 86.52992805 3.008048499 773 3602243 53.07 5683 ERS3967707 ERR4757822 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967707__bin.4 LeechJ_2020__ERS3967707__bin.4 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Lelliottia Lelliottia sp000016325 kvass kvass Plant Grain rye beverage liquid low lactic mesophilic 3-7 days LeechJ_2020__ERS3967740__bin.8 99.38271605 2.777777778 82 2975644 44.88 56432 ERS3967740 ERR4757855 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum kvass kvass Plant Grain rye beverage liquid low lactic mesophilic 3-7 days LeechJ_2020__ERS3967740__bin.10 99.38271605 0 52 1933896 38.5 78535 ERS3967740 ERR4757855 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967740__bin.10 LeechJ_2020__ERS3967740__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus parvulus kvass kvass Plant Grain rye beverage liquid low lactic mesophilic 3-7 days LeechJ_2020__ERS3967740__bin.6 96.92057292 2.5 269 2294120 44.66 12593 ERS3967740 ERR4757855 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. DeFilippisF_xxxx__DF_30__bin.3 LeechJ_2020__ERS3967735__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri kvass kvass Plant Grain rye beverage liquid low lactic mesophilic 3-7 days LeechJ_2020__ERS3967740__bin.5 51.42473118 0.307219662 388 1050757 60.33 2742 ERS3967740 ERR4757855 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967706__bin.3 LeechJ_2020__ERS3967740__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium longum kvass kvass Plant Grain rye beverage liquid low lactic mesophilic 3-7 days LeechJ_2020__ERS3967740__bin.4 58.92372391 1.639344262 316 1056755 47.32 3639 ERS3967740 ERR4757855 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967703__bin.6 LeechJ_2020__ERS3967740__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus mucosae kvass kvass Plant Grain rye beverage liquid low lactic mesophilic 3-7 days LeechJ_2020__ERS3967740__bin.7 100 0 121 3945809 64.42 53743 ERS3967740 ERR4757855 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967740__bin.7 LeechJ_2020__ERS3967740__bin.7 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Aquaspirillaceae;Microvirgula Microvirgula aerodenitrificans kvass kvass Plant Grain rye beverage liquid low lactic mesophilic 3-7 days LeechJ_2020__ERS3967740__bin.11 99.375 0.78125 31 2594880 45.07 124726 ERS3967740 ERR4757855 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967740__bin.11 LeechJ_2020__ERS3967740__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Secundilactobacillus Secundilactobacillus silagei kvass kvass Plant Grain rye beverage liquid low lactic mesophilic 3-7 days YasirM_2020__ERS4361128__bin.2 79.25361156 1.186017478 331 1430054 38.1 5223 ERS4361128 ERR3964979 Saudi Arabia PRJEB36988 ERP120265 NCBI Yasir, M., Bibi, F., Hashem, A.M., and Azhar, E.I. (2020). Comparative metagenomics and characterization of antimicrobial resistance genes in pasteurized and homemade fermented Arabian laban. Food Res. Int. 137, 109639. WalshAM_2017__ERS1739834__bin.1 YasirM_2020__ERS4361128__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius laban laban Animal Dairy milk cheese semi-solid none lactic mesophilic 20 days YasirM_2020__ERS4361129__bin.1 64.44687045 0.145560408 27 1005770 39.74 75493 ERS4361129 ERR3964980 Saudi Arabia PRJEB36988 ERP120265 NCBI Yasir, M., Bibi, F., Hashem, A.M., and Azhar, E.I. (2020). Comparative metagenomics and characterization of antimicrobial resistance genes in pasteurized and homemade fermented Arabian laban. Food Res. Int. 137, 109639. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus laban laban Animal Dairy milk cheese semi-solid none lactic mesophilic 20 days YasirM_2020__ERS4361129__bin.2 67.06896552 3.448275862 344 1355409 34.92 4487 ERS4361129 ERR3964980 Saudi Arabia PRJEB36988 ERP120265 NCBI Yasir, M., Bibi, F., Hashem, A.M., and Azhar, E.I. (2020). Comparative metagenomics and characterization of antimicrobial resistance genes in pasteurized and homemade fermented Arabian laban. Food Res. Int. 137, 109639. PatroJN_2016__SRS1044738__bin.12 PatroJN_2016__SRS1044738__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus acidophilus laban laban Animal Dairy milk cheese semi-solid none lactic mesophilic 20 days Imad_L-18.bin.9 99.38 0 93 2169551 41.98 38441 SAMN29828104 SRR20308665 Lebanon PRJNA860091 SRP387050 NCBI Ammoun I, Kothe CI, Mohellibi N, Beal C, Yaacoub R, Renault P. Lebanese fermented goat milk products: From tradition to meta-omics. Food Res Int. 2023 Jun;168:112762. doi: 10.1016/j.foodres.2023.112762. SalgadoTS_2021__SRR13801804__bin.3 SalgadoTS_2021__SRR13801804__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri labneh labneh Animal Dairy milk cheese semi-solid none lactic mesophilic 20 days EBC_090.1 50.32 6.74 12 3475245 55.55 605843 SAMN40633084 SRS20892317 Belgium PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_090.1 EBC_090.1 Asgardarchaeota;Njordarchaeia;NA;NA;NA NA pickle elderberries lacto_elderberries Plant Fruit elderberries pickled fruit solid none lactic mesophilic 1 day - 3 months EBC_090.4 91.36 3.87 65 2881938 32.85 85881 SAMN40633084 SRS20892317 Belgium PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 MAG_112 MAG_112 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus nepalensis pickle elderberries lacto_elderberries Plant Fruit elderberries pickled fruit solid none lactic mesophilic 1 day - 3 months EBC_090.9 64.83 0 31 2257591 32.25 128495 SAMN40633084 SRS20892317 Belgium PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_090.9 EBC_090.9 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus cohnii pickle elderberries lacto_elderberries Plant Fruit elderberries pickled fruit solid none lactic mesophilic 1 day - 3 months LeechJ_xxxx__AF16__bin.2 90.98360656 1.092896175 207 1564668 53.31 11432 SAMN39472435 SRR27593235 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF53__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum lafun lafun Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF16__bin.3 93.49222747 1.039734075 212 1472660 51.37 9598 SAMN39472435 SRR27593235 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic LeechJ_xxxx__AF53__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii lafun lafun Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF16__bin.7 67.46089932 1.1983588 759 1987863 29.82 2731 SAMN39472435 SRR27593235 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF53__bin.10 LeechJ_xxxx__AF16__bin.7 Bacillota;Clostridia;Clostridiales;Clostridiaceae;Clostridium Clostridium saccharobutylicum lafun lafun Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF53__bin.1 82.11670144 4.228855721 404 1766027 54.68 4976 SAMN39472472 SRR27593194 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_004014775.2_ASM401477v2_genomic LeechJ_xxxx__AF53__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter oryzoeni lafun lafun Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF53__bin.9 98.08743169 0 139 1711125 53.3 24285 SAMN39472472 SRR27593194 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF53__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum lafun lafun Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF53__bin.2 95.77922078 0 137 1657329 51.01 17736 SAMN39472472 SRR27593194 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic LeechJ_xxxx__AF53__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii lafun lafun Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF53__bin.12 53.44827586 1.724137931 93 835400 35.75 15736 SAMN39472472 SRR27593194 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 LeechJ_xxxx__AF51__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus lafun lafun Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF53__bin.10 62.43849788 0.065486296 939 2437611 30.38 2604 SAMN39472472 SRR27593194 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF53__bin.10 LeechJ_xxxx__AF53__bin.10 Bacillota;Clostridia;Clostridiales;Clostridiaceae;Clostridium Clostridium saccharobutylicum lafun lafun Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF53__bin.8 72.1715755 1.679841897 242 1174633 54.4 6087 SAMN39472472 SRR27593194 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009428965.1_ASM942896v1_genomic LeechJ_xxxx__AF53__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus pontis lafun lafun Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF53__bin.11 94.56521739 1.630434783 145 1771428 48.52 18175 SAMN39472472 SRR27593194 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__P-22__bin.8 GCF_001435935.1_ASM143593v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus panis lafun lafun Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF70__bin.6 82.12962963 4.098079561 609 2614984 45.44 5104 SAMN39472489 SRR27593172 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 LeechJ_xxxx__AF70__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum lafun lafun Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF70__bin.7 94.15300546 3.004462926 287 1445372 53.51 6445 SAMN39472489 SRR27593172 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF53__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum lafun lafun Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF70__bin.2 53.44827586 0 106 888731 35.79 13408 SAMN39472489 SRR27593172 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 LeechJ_xxxx__AF82__bin.16 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus lafun lafun Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF70__bin.5 92.27813853 1.590909091 205 1495053 51.43 11504 SAMN39472489 SRR27593172 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic LeechJ_xxxx__AF53__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii lafun lafun Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF70__bin.10 71.67797377 1.990049751 557 1678929 53.37 3126 SAMN39472489 SRR27593172 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly LeechJ_xxxx__AF70__bin.10 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis lafun lafun Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF70__bin.8 56.80706522 0.815217391 331 1058366 49.31 3365 SAMN39472489 SRR27593172 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__P-22__bin.8 LeechJ_xxxx__AF70__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus panis lafun lafun Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days EBC_110.6 89.16 4.3 745 5495437 69.3 9144 SAMN40633104 SRS20892341 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_110.6 EBC_110.6 Actinomycetota;Actinomycetes;Streptosporangiales;Streptosporangiaceae;Nocardiopsis Nocardiopsis sp040635885 cheese larger_cheese_wheel_reiss Animal Dairy milk cheese solid low lactic mesophilic 1-3 months LeechJ_2020__ERS3967744__bin.6 98.9375 0.625 125 3196176 40.04 41803 ERS3967744 ERR4757859 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 LeechJ_2020__ERS3967690__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans beer ginger lemon_and_ginger_fizz Plant Vegetables_Aromatics ginger beverage liquid medium lactic mesophilic 1-14 days LeechJ_2020__ERS3967744__bin.7 50.74626866 0 6 1350435 58.35 863046 ERS3967744 ERR4757859 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. SRR10454517C1506_cerevisiae_assembly LeechJ_2020__ERS3967744__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter cerevisiae beer ginger lemon_and_ginger_fizz Plant Vegetables_Aromatics ginger beverage liquid medium lactic mesophilic 1-14 days GCF_023091965.1_ASM2309196v1_genomic 99.14 0.86 11 3421152 61.01 637702 GCF_023091965.1 GCF_023091965.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_023091965.1_ASM2309196v1_genomic GCF_023091965.1_ASM2309196v1_genomic Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter moromii moromi lupinebased_moromi_fermentation Plant Legumes lupine other bean paste semi-solid none lactic mesophilic 1-6 months EBC_113.1 95.16 0.3 76 3440952 51.67 81608 SAMN40633107 SRS20892343 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_113.1 EBC_113.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Tatumella Tatumella ptyseos wine mad_ange_pdc Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months GCF_008694105.1_ASM869410v1_genomic 99.21 1.05 1 3290626 53.36 3290626 GCF_008694105.1 GCF_008694105.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_008694105.1_ASM869410v1_genomic GCF_008694105.1_ASM869410v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis makgeolli makgeolli Plant Grain rice beverage liquid high lactic mesophilic 3-7 days LeechJ_xxxx__AF78__bin.14 53.44827586 0 122 814449 54.26 8933 SAMN39472497 SRR27593163 Burkina Faso PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF78__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum massa massa Plant Grain rice starch-based staple solid low lactic mesophilic 1-3 days LeechJ_xxxx__AF78__bin.11 86.93571518 4.443158436 329 1253681 37.17 4372 SAMN39472497 SRR27593163 Burkina Faso PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KharnaiorP_2023__SRR22859379__bin.8 LeechJ_xxxx__AF78__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus massa massa Plant Grain rice starch-based staple solid low lactic mesophilic 1-3 days LeechJ_xxxx__AF78__bin.7 99.34456929 1.248439451 121 1709069 37.7 25284 SAMN39472497 SRR27593163 Burkina Faso PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 WalshAM_2017__ERS1739834__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius massa massa Plant Grain rice starch-based staple solid low lactic mesophilic 1-3 days LeechJ_xxxx__AF78__bin.4 98.91304348 0.543478261 134 1838021 38.82 24064 SAMN39472497 SRR27593163 Burkina Faso PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF78__bin.4 LeechJ_xxxx__AF78__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus reuteri massa massa Plant Grain rice starch-based staple solid low lactic mesophilic 1-3 days GCF_900618535.1_TH39_genomic 100 0.18 20 5028196 58.16 750140 GCF_900618535.1_TH39_genomic GCF_900618535.1_TH39_genomic NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_900618535.1_TH39_genomic GCF_900618535.1_TH39_genomic Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E bubulae sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C02-18__bin.2 51.6 3.1 2506 20998336 49.35 9910 SAMN36689826 SRR25393922 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__C05-19__bin.5 AlvarezOrdonezA_xxxx__C05-19__bin.5 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Aspergillus Aspergillus glaucus sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C02-19__bin.5 63.79310345 0.862068966 542 1596974 34.08 3152 SAMN36689827 SRR25393921 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 AlvarezOrdonezA_xxxx__C02-19__bin.5 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C02-19__bin.3 74.13793103 0 279 5340756 60.46 30953 SAMN36689827 SRR25393921 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__C02-19__bin.3 AlvarezOrdonezA_xxxx__C02-19__bin.3 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E lactis sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C02-19__bin.1 64.9122807 0 712 3816144 54.95 6480 SAMN36689827 SRR25393921 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__C02-19__bin.1 AlvarezOrdonezA_xxxx__C02-19__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Ewingella Ewingella americana sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C02-19__bin.10 63.9 3.3 1188 9316757 36.54 10532 SAMN36689827 SRR25393921 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__C02-19__bin.10 AlvarezOrdonezA_xxxx__C02-19__bin.10 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces tyrocola sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C02-19__bin.6 51.8 0.8 3742 15682687 48.99 4505 SAMN36689827 SRR25393921 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__F05-18__bin.5 AlvarezOrdonezA_xxxx__C02-19__bin.6 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium nordicum sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C02-19__bin.11 87.9 2.3 1851 11047923 35.33 8032 SAMN36689827 SRR25393921 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__C02-19__bin.11 AlvarezOrdonezA_xxxx__C02-19__bin.11 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces unknown sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C03-18__bin.6 87.79926335 1.243093923 399 1860816 37.24 5471 SAMN36689828 SRR25393920 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001703515.1_ASM170351v1_genomic AlvarezOrdonezA_xxxx__C03-18__bin.6 Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C03-18__bin.11 95.44342508 1.949541284 339 3564528 63.7 16154 SAMN36689828 SRR25393920 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__C06-19__bin.13 AlvarezOrdonezA_xxxx__C06-19__bin.13 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Specibacter NA sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C03-19__bin.28 69.12478299 4.109224109 538 2177064 42.91 4488 SAMN36689829 SRR25393919 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 182 AlvarezOrdonezA_xxxx__C03-19__bin.28 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C03-19__bin.15 92.3572744 3.718885522 370 2131992 36.62 7471 SAMN36689829 SRR25393919 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001703515.1_ASM170351v1_genomic We2_bin.full.40 Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C03-19__bin.11 90.6116208 1.23853211 470 3363795 63.63 10444 SAMN36689829 SRR25393919 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__C06-19__bin.13 AlvarezOrdonezA_xxxx__C06-19__bin.13 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Specibacter NA sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C03-19__bin.12 82 0.2 1952 14610807 49.82 9042 SAMN36689829 SRR25393919 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__C03-19__bin.12 AlvarezOrdonezA_xxxx__C03-19__bin.12 Ascomycota;Saccharomycetes;Saccharomycetales;Dipodascaceae;Yarrowia Yarrowia alimentaria sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C04-18__bin.1 100 0 52 3910714 63.56 105742 SAMN36689830 SRR25393918 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_90__bin.4 DeFilippisF_xxxx__DS_90__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sandarakinum A sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C04-18__bin.3 64.8 0.3 4037 18059828 50.24 4990 SAMN36689830 SRR25393918 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__F05-18__bin.3 AlvarezOrdonezA_xxxx__F05-18__bin.3 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Aspergillus unknown sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C04-18__bin.8 90.6 0.2 2879 30370362 48.62 14261 SAMN36689830 SRR25393918 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2560__bin.1 MASTER_WP4_CSIC_2__P2560__bin.1 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium sp SPG F1 sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C04-18__bin.6 86.3 0.5 1886 11501751 36.2 8020 SAMN36689830 SRR25393918 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 AlvarezOrdonezA_xxxx__C04-18__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C04-18__bin.7 73.2 0.1 2198 7984617 38.72 4075 SAMN36689830 SRR25393918 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__C04-18__bin.7 AlvarezOrdonezA_xxxx__C04-18__bin.7 Ascomycota;Saccharomycetes;Saccharomycetales;unknown;unknown Candida glucosophila sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C04-19__bin.1 75.2 0.7 3387 23595460 49.8 8489 SAMN36689831 SRR25393917 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__F05-18__bin.3 AlvarezOrdonezA_xxxx__F05-18__bin.3 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Aspergillus unknown sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C05-18__bin.17 98.91304348 0 52 1827907 41.19 44105 SAMN36689832 SRR25393915 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 AlvarezOrdonezA_xxxx__C05-18__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C05-18__bin.9 86.95175439 4.714912281 537 2588702 70.91 6147 SAMN36689832 SRR25393915 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB16-22__bin.7 AlvarezOrdonezA_xxxx__C05-18__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Kocuria Kocuria salsicia sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C05-18__bin.5 99.33774834 0.022075055 59 2211763 36.92 94593 SAMN36689832 SRR25393915 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__C05-18__bin.5 AlvarezOrdonezA_xxxx__C05-18__bin.5 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus sp030462125 sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C05-18__bin.18 62.52491694 3.779069767 950 3481657 62.22 4237 SAMN36689832 SRR25393915 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q01-29__bin.6 AlvarezOrdonezA_xxxx__C05-18__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C05-18__bin.8 91.54208195 2.209302326 416 3990845 62.66 14957 SAMN36689832 SRR25393915 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__575_CabotClothbound__bin.6 DeFilippisF_xxxx__DS_110__bin.15 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C05-18__bin.6 62.65122265 0.455598456 667 1924136 68.91 3029 SAMN36689832 SRR25393915 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__C05-18__bin.6 AlvarezOrdonezA_xxxx__C05-18__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Dermatophilaceae;Dermacoccus Dermacoccus nishinomiyaensis sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C05-18__bin.20 56.19520656 3.53200883 557 1389821 70.03 2553 SAMN36689832 SRR25393915 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__C05-18__bin.20 AlvarezOrdonezA_xxxx__C05-18__bin.20 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia NA sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C05-19__bin.10 80.93517961 4.525386313 373 1877107 36.09 6516 SAMN36689833 SRR25393914 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 AlvarezOrdonezA_xxxx__C05-19__bin.10 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C05-19__bin.11 50.60505266 0.054644809 77 2214409 54.71 43010 SAMN36689833 SRR25393914 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__C02-19__bin.1 AlvarezOrdonezA_xxxx__C05-19__bin.11 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Ewingella Ewingella americana sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C05-19__bin.5 60 3.7 3296 23952958 49.38 9133 SAMN36689833 SRR25393914 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__C05-19__bin.5 AlvarezOrdonezA_xxxx__C05-19__bin.5 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Aspergillus Aspergillus glaucus sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C06-18__bin.11 55.17241379 0 418 1758769 43.26 4694 SAMN36689834 SRR25393913 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 182 AlvarezOrdonezA_xxxx__C06-18__bin.11 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C06-18__bin.5 83.19521179 1.197053407 375 1813844 36.54 5604 SAMN36689834 SRR25393913 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001703515.1_ASM170351v1_genomic AlvarezOrdonezA_xxxx__C06-18__bin.5 Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C06-18__bin.14 88.08468036 1.862166885 573 3473313 63.58 8326 SAMN36689834 SRR25393913 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__C06-19__bin.13 AlvarezOrdonezA_xxxx__C06-19__bin.13 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Specibacter NA sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C06-18__bin.23 89.5 4.2 5208 31801599 34.2 8171 SAMN36689834 SRR25393913 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__C06-18__bin.23 AlvarezOrdonezA_xxxx__C06-18__bin.23 Mucoromycota;Mucoromycetes;Mucorales;Mucoraceae;Helicostylum Helicostylum pulchrum sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C06-19__bin.3 95.02762431 3.038674033 375 2183674 36.79 7828 SAMN36689835 SRR25393912 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001703515.1_ASM170351v1_genomic We2_bin.full.40 Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C06-19__bin.13 95.74923547 1.796636086 234 3581425 63.76 25319 SAMN36689835 SRR25393912 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__C06-19__bin.13 AlvarezOrdonezA_xxxx__C06-19__bin.13 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Specibacter NA sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C07-18__bin.6 92.11292167 3.710691824 367 2305120 38.85 10453 SAMN36689836 SRR25393911 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_100__bin.11 AlvarezOrdonezA_xxxx__C07-18__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A carnosus sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C07-18__bin.11 83.99676059 2.436463712 707 3121599 47.16 5194 SAMN36689836 SRR25393911 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0009-005_Bacillus_velezensis_YJ11-1-4 AlvarezOrdonezA_xxxx__C07-18__bin.11 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus velezensis sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C07-18__bin.12 94.75138122 4.696132597 443 2498525 36.15 7342 SAMN36689836 SRR25393911 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001703515.1_ASM170351v1_genomic GCF_001703515.1_ASM170351v1_genomic Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C07-18__bin.2 80.58717077 2.751068376 513 2221771 42.96 5111 SAMN36689836 SRR25393911 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__C07-19__bin.8 AlvarezOrdonezA_xxxx__C07-19__bin.8 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter pasteurii sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C07-19__bin.17 94.73684211 4.051036683 580 3507581 47.17 8081 SAMN36689837 SRR25393910 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0009-005_Bacillus_velezensis_YJ11-1-4 AlvarezOrdonezA_xxxx__C07-19__bin.17 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus velezensis sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C07-19__bin.13 53.44827586 0 426 1221413 43.07 2977 SAMN36689837 SRR25393910 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__R04-18__bin.10 AlvarezOrdonezA_xxxx__C07-19__bin.13 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter harbinensis sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C07-19__bin.8 88.64409648 1.694139194 389 2410223 43.15 7998 SAMN36689837 SRR25393910 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__C07-19__bin.8 AlvarezOrdonezA_xxxx__C07-19__bin.8 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter pasteurii sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C07-19__bin.10 88.72613803 4.351443955 574 2273482 63.33 4552 SAMN36689837 SRR25393910 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__C07-19__bin.10 AlvarezOrdonezA_xxxx__C07-19__bin.10 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium testudinoris sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C07-19__bin.9 85.90876156 4.056603774 667 2669867 43.67 4832 SAMN36689837 SRR25393910 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_45 AlvarezOrdonezA_xxxx__C07-19__bin.9 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_D Enterococcus D casseliflavus sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C07-19__bin.6 97.9 0.1 417 11735949 36.26 71076 SAMN36689837 SRR25393910 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C08-18__bin.7 85.88962158 2.808471455 545 2033201 36.94 4401 SAMN36689838 SRR25393909 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001703515.1_ASM170351v1_genomic AlvarezOrdonezA_xxxx__C08-18__bin.7 Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C08-18__bin.12 51.6 0.4 482 6240623 51.38 17536 SAMN36689838 SRR25393909 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__C08-18__bin.12 AlvarezOrdonezA_xxxx__C08-18__bin.12 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Kurtzmaniella unknown sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C08-18__bin.3 81.1 0.4 4473 25690770 48.67 6877 SAMN36689838 SRR25393909 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__F05-18__bin.5 AlvarezOrdonezA_xxxx__F05-18__bin.5 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium nordicum sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__C08-18__bin.8 65.4 3.5 3444 11864480 36.11 3845 SAMN36689838 SRR25393909 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 AlvarezOrdonezA_xxxx__C08-18__bin.8 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F01-18__bin.11 67.00912564 1.348235098 596 1885463 43.34 3405 SAMN36689840 SRR25393907 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 182 AlvarezOrdonezA_xxxx__F01-18__bin.11 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F01-18__bin.6 55.51724138 0 413 1349375 37.84 3489 SAMN36689840 SRR25393907 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001703515.1_ASM170351v1_genomic AlvarezOrdonezA_xxxx__F01-18__bin.6 Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F01-19__bin.6 79.87363928 2.352904513 365 1302389 36.63 3956 SAMN36689841 SRR25393906 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__F01-19__bin.6 AlvarezOrdonezA_xxxx__F01-19__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Dellaglioa Dellaglioa algida sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F01-19__bin.2 79.01249811 3.417602996 344 1298451 37.7 4142 SAMN36689841 SRR25393906 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_000298875.1_ASM29887v1_genomic AlvarezOrdonezA_xxxx__F01-19__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc gelidum sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F02-18__bin.4 51.72413793 3.448275862 312 1482305 42.73 5953 SAMN36689842 SRR25394015 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 AlvarezOrdonezA_xxxx__F02-18__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F02-18__bin.2 52.28622754 0.916230366 385 1281438 39.82 3722 SAMN36689842 SRR25394015 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F02-18__bin.3 64.77890316 1.992753623 246 952701 41.18 4390 SAMN36689842 SRR25394015 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 AlvarezOrdonezA_xxxx__F02-18__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F02-18__bin.10 98.69109948 0.698080279 41 1582701 33.78 75573 SAMN36689842 SRR25394015 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__F02-18__bin.10 AlvarezOrdonezA_xxxx__F02-18__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Dellaglioa NA sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F02-18__bin.7 87.11350294 1.782897468 515 2091340 42.68 4849 SAMN36689842 SRR25394015 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__R04-18__bin.10 AlvarezOrdonezA_xxxx__F02-18__bin.7 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter harbinensis sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F02-19__bin.17 55.17241379 1.724137931 244 1004727 41.1 5234 SAMN36689843 SRR25394014 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 AlvarezOrdonezA_xxxx__F02-18__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F02-19__bin.10 97.30453708 4.6218737 371 2495397 36.74 8881 SAMN36689843 SRR25394014 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001703515.1_ASM170351v1_genomic GCF_001703515.1_ASM170351v1_genomic Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F02-19__bin.16 56.89655172 0 7 712504 33.15 414403 SAMN36689843 SRR25394014 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__F02-18__bin.10 AlvarezOrdonezA_xxxx__F02-18__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Dellaglioa NA sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F02-19__bin.8 81.03448276 1.724137931 465 2251261 42.31 5823 SAMN36689843 SRR25394014 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__R04-18__bin.10 AlvarezOrdonezA_xxxx__F02-19__bin.8 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter harbinensis sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F03-18__bin.3 53.84535005 0 202 1028688 37.34 6346 SAMN36689844 SRR25394013 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967741__bin.9 AlvarezOrdonezA_xxxx__F03-18__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc gasicomitatum sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F03-18__bin.18 59.58690844 3.830891331 652 1861783 43.27 2994 SAMN36689844 SRR25394013 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 182 AlvarezOrdonezA_xxxx__F03-18__bin.18 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F03-18__bin.8 85.7706023 3.885429639 540 2171686 42.1 4646 SAMN36689844 SRR25394013 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__R04-18__bin.10 AlvarezOrdonezA_xxxx__F03-18__bin.8 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter harbinensis sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F03-18__bin.4 92.44389902 3.351449275 275 1969536 42.3 9614 SAMN36689844 SRR25394013 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__F03-18__bin.4 AlvarezOrdonezA_xxxx__F03-18__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus fuchuensis sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F03-18__bin.1 94.16666667 0.714285714 264 2912387 50.83 15464 SAMN36689844 SRR25394013 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__F03-18__bin.1 AlvarezOrdonezA_xxxx__F03-18__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus cerevisiae sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F03-19__bin.3 51.43678161 2.586206897 335 1122270 37.39 3446 SAMN36689845 SRR25394012 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967741__bin.9 AlvarezOrdonezA_xxxx__F03-19__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc gasicomitatum sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F03-19__bin.2 57.36007199 1.91970547 270 980883 41.04 3851 SAMN36689845 SRR25394012 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 AlvarezOrdonezA_xxxx__F03-19__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F03-19__bin.4 74.29467085 1.724137931 544 2029316 42.29 4133 SAMN36689845 SRR25394012 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__R04-18__bin.10 AlvarezOrdonezA_xxxx__F03-19__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter harbinensis sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F03-19__bin.9 89.67391304 3.170289855 290 1827675 42.65 8937 SAMN36689845 SRR25394012 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__F03-18__bin.4 AlvarezOrdonezA_xxxx__F03-19__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus fuchuensis sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F03-19__bin.17 74.27295434 2.161750936 223 1246355 37.23 7740 SAMN36689845 SRR25394012 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_000298875.1_ASM29887v1_genomic AlvarezOrdonezA_xxxx__F03-19__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc gelidum sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F03-19__bin.16 65.3851461 0.9375 517 2093845 51.45 4705 SAMN36689845 SRR25394012 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__F03-18__bin.1 AlvarezOrdonezA_xxxx__F03-18__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus cerevisiae sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F04-18__bin.3 89.85507246 0.923913043 380 1632823 41.67 5198 SAMN36689846 SRR25394011 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 AlvarezOrdonezA_xxxx__F04-18__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F05-18__bin.1 90.18229167 0.381944444 259 2049689 46.6 9805 SAMN36689848 SRR25394009 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 DeFilippisF_xxxx__DS_50__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F05-18__bin.4 70.8045977 0 207 1781538 42.18 13107 SAMN36689848 SRR25394009 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F05-18__bin.6 96.07329843 0.589005236 228 2130838 38.7 13548 SAMN36689848 SRR25394009 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F05-18__bin.7 68.96551724 0.574712644 220 1385741 41.22 8954 SAMN36689848 SRR25394009 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 AlvarezOrdonezA_xxxx__C05-18__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F05-18__bin.3 89 0.6 1667 26316398 49.8 22409 SAMN36689848 SRR25394009 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__F05-18__bin.3 AlvarezOrdonezA_xxxx__F05-18__bin.3 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Aspergillus unknown sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F05-18__bin.5 85.2 0.5 3345 27569983 48.52 10362 SAMN36689848 SRR25394009 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__F05-18__bin.5 AlvarezOrdonezA_xxxx__F05-18__bin.5 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium nordicum sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F05-18__bin.2 54.6 3.8 2812 9914368 35.84 3878 SAMN36689848 SRR25394009 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 AlvarezOrdonezA_xxxx__F05-18__bin.2 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F05-19__bin.13 90.9375 0 79 2270716 46.14 60771 SAMN36689849 SRR25394008 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 DeFilippisF_xxxx__DS_50__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F05-19__bin.3 80.48589342 0 228 1574769 42.32 10188 SAMN36689849 SRR25394008 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F05-19__bin.4 99.47643979 0.589005236 58 2364382 38.33 94854 SAMN36689849 SRR25394008 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F05-19__bin.11 79.74650204 1.902173913 263 1356249 41.29 6388 SAMN36689849 SRR25394008 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 AlvarezOrdonezA_xxxx__C05-18__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F05-19__bin.1 62.65270506 0.523560209 82 843785 34.54 21758 SAMN36689849 SRR25394008 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__F02-18__bin.10 AlvarezOrdonezA_xxxx__F02-18__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Dellaglioa NA sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F05-19__bin.8 87.4 0.6 1989 26363526 49.74 19021 SAMN36689849 SRR25394008 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__F05-18__bin.3 AlvarezOrdonezA_xxxx__F05-18__bin.3 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Aspergillus unknown sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F05-19__bin.10 86.8 0.5 1496 11818303 36.21 11384 SAMN36689849 SRR25394008 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F06-18__bin.1 58.67816092 0 207 1507259 42.28 9858 SAMN36689850 SRR25394007 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 AlvarezOrdonezA_xxxx__F06-19__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F06-18__bin.4 64.65517241 1.724137931 281 1169195 41.04 5081 SAMN36689850 SRR25394007 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 AlvarezOrdonezA_xxxx__F06-19__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F06-19__bin.2 88.93904862 5 265 1945326 41.62 10432 SAMN36689851 SRR25394006 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 AlvarezOrdonezA_xxxx__F06-19__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F06-19__bin.3 58.62068966 0 459 2093017 44.55 5084 SAMN36689851 SRR25394006 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FranciosaI_2021__SRR12227952__bin.4 AlvarezOrdonezA_xxxx__F06-19__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraplantarum sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F06-19__bin.1 87.0923913 1.992753623 216 1641437 41.14 11427 SAMN36689851 SRR25394006 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 AlvarezOrdonezA_xxxx__F06-19__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F06-19__bin.9 90.9 0.2 2186 31654128 48.54 20745 SAMN36689851 SRR25394006 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__O-30__bin.13 MASTER_WP4_UNINA_2__O-30__bin.13 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium camemberti sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F06-19__bin.4 92.5 0.2 6878 31618660 33.52 5765 SAMN36689851 SRR25394006 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2638__bin.9 AlvarezOrdonezA_xxxx__F06-19__bin.4 Mucoromycota;Mucoromycetes;Mucorales;Mucoraceae;Mucor Mucor racemosus sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F06-19__bin.5 97.6 0.2 417 11706629 36.25 65142 SAMN36689851 SRR25394006 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F07-18__bin.4 52.19467872 1.006289308 442 1195642 36.57 2795 SAMN36689852 SRR25394004 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 AlvarezOrdonezA_xxxx__F07-18__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F07-18__bin.11 96.1124974 1.819505095 187 1651132 39.62 13463 SAMN36689852 SRR25394004 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F07-18__bin.10 97.55434783 2.29743083 208 1821225 41.1 13302 SAMN36689852 SRR25394004 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 AlvarezOrdonezA_xxxx__C05-18__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F07-18__bin.6 95.16617791 2.12962963 280 2714118 33.32 17416 SAMN36689852 SRR25394004 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259377__bin.4 YangC_2021__SRR13259377__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum A sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F07-18__bin.5 97.5 0.3 678 11895181 36.32 32709 SAMN36689852 SRR25394004 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F07-19__bin.6 96.55797101 2.038043478 174 1804528 41.15 17863 SAMN36689853 SRR25394003 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 AlvarezOrdonezA_xxxx__C05-18__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__F07-19__bin.2 97.4 0.2 794 12312155 36.27 33136 SAMN36689853 SRR25394003 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__R01-18__bin.2 97.23756906 2.025782689 353 2253455 36.78 8773 SAMN36689854 SRR25394002 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001703515.1_ASM170351v1_genomic GCF_001703515.1_ASM170351v1_genomic Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__R01-18__bin.4 74.48814148 2.094240838 330 1104174 38.12 3520 SAMN36689854 SRR25394002 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_229__bin.10 AlvarezOrdonezA_xxxx__R01-18__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc carnosum sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__R01-19__bin.5 77.5862069 0 369 2079257 36.76 7108 SAMN36689855 SRR25394001 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001703515.1_ASM170351v1_genomic GCF_001703515.1_ASM170351v1_genomic Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__R01-19__bin.1 61.20689655 0 741 3137762 61.95 4891 SAMN36689855 SRR25394001 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__R01-19__bin.1 AlvarezOrdonezA_xxxx__R01-19__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Aeromonadaceae;Aeromonas Aeromonas bestiarum sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__R01-19__bin.3 95.25862069 0.517241379 229 1979429 60.19 11697 SAMN36689855 SRR25394001 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__R01-19__bin.3 AlvarezOrdonezA_xxxx__R01-19__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Trueperella Trueperella pyogenes sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__R02-18__bin.2 85.26703499 1.675280699 439 1779500 37.41 4806 SAMN36689856 SRR25394000 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001703515.1_ASM170351v1_genomic AlvarezOrdonezA_xxxx__R02-18__bin.2 Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__R02-19__bin.2 96.68508287 4.696132597 397 2234091 36.72 7042 SAMN36689857 SRR25393999 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001703515.1_ASM170351v1_genomic GCF_001703515.1_ASM170351v1_genomic Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__R03-18__bin.20 73.56321839 1.724137931 221 1641988 42.22 11140 SAMN36689858 SRR25393998 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__R03-18__bin.3 96.50900901 1.115401115 426 2873025 67.77 9275 SAMN36689858 SRR25393998 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 AlvarezOrdonezA_xxxx__R03-18__bin.3 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__R03-18__bin.16 97.69736842 1.535087719 237 2927752 70.23 20335 SAMN36689858 SRR25393998 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-22__bin.20 AlvarezOrdonezA_xxxx__R03-19__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Kocuria Kocuria sp025149945 sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__R03-18__bin.15 68.92893661 0.613496933 84 1410052 36.53 29734 SAMN36689858 SRR25393998 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_010306265.1_ASM1030626v1_genomic MASTER_WP4_UNINA_1__SS007_71775__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella sagaensis sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__R03-19__bin.18 77.01149425 0 217 1650356 42.17 11487 SAMN36689859 SRR25393997 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__R03-19__bin.23 53.78271128 3.205705706 879 2305301 68.55 2632 SAMN36689859 SRR25393997 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 AlvarezOrdonezA_xxxx__R03-19__bin.23 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__R03-19__bin.11 95.42042042 1.866151866 451 2877285 67.77 9858 SAMN36689859 SRR25393997 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 AlvarezOrdonezA_xxxx__R03-18__bin.3 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__R03-19__bin.13 53.79310345 0 529 1883642 48.51 4063 SAMN36689859 SRR25393997 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2584__bin.5 AlvarezOrdonezA_xxxx__R03-19__bin.13 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter celer sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__R03-19__bin.24 97.36842105 0.942982456 297 2740295 70.44 14052 SAMN36689859 SRR25393997 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB10-22__bin.20 AlvarezOrdonezA_xxxx__R03-19__bin.24 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Kocuria Kocuria sp025149945 sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__R03-19__bin.28 64.74789916 0.420168067 493 1443303 59.22 3105 SAMN36689859 SRR25393997 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 AlvarezOrdonezA_xxxx__R03-19__bin.28 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__R03-19__bin.3 97.90575916 1.047120419 65 1527356 37.4 46315 SAMN36689859 SRR25393997 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_229__bin.10 CM_UNINA_FFOOD__FFOOD_229__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc carnosum sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__R03-19__bin.25 97.54601227 1.380368098 120 1892830 36.72 32427 SAMN36689859 SRR25393997 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_010306265.1_ASM1030626v1_genomic MASTER_WP4_UNINA_1__SS007_71775__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella sagaensis sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__R03-19__bin.7 65.36706349 0 542 1729026 69.28 3489 SAMN36689859 SRR25393997 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__R03-19__bin.7 AlvarezOrdonezA_xxxx__R03-19__bin.7 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium xerosis sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__R03-19__bin.22 77.50923622 2.800671551 543 2033776 45.74 4285 SAMN36689859 SRR25393997 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__R03-19__bin.22 AlvarezOrdonezA_xxxx__R03-19__bin.22 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter submarinus sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__R03-19__bin.21 52.91375291 0.233100233 280 719068 33.07 2523 SAMN36689859 SRR25393997 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__R03-19__bin.21 AlvarezOrdonezA_xxxx__R03-19__bin.21 Bacillota;Clostridia;Peptostreptococcales;Peptostreptococcaceae;Peptostreptococcus NA sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__R04-18__bin.6 87.10865562 0.460405157 421 1927019 37.28 5901 SAMN36689860 SRR25393996 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001703515.1_ASM170351v1_genomic AlvarezOrdonezA_xxxx__R04-18__bin.6 Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__R04-18__bin.10 87.96694934 1.71701358 495 2062603 42.53 4821 SAMN36689860 SRR25393996 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__R04-18__bin.10 AlvarezOrdonezA_xxxx__R04-18__bin.10 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter harbinensis sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__R04-19__bin.8 55.26315789 3.50877193 792 4365012 59 7207 SAMN36689861 SRR25393995 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_900618535.1_TH39_genomic AlvarezOrdonezA_xxxx__R04-19__bin.8 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E bubulae sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__R04-19__bin.1 98.75690608 0.460405157 342 2300457 36.78 8974 SAMN36689861 SRR25393995 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001703515.1_ASM170351v1_genomic GCF_001703515.1_ASM170351v1_genomic Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks AlvarezOrdonezA_xxxx__R04-19__bin.9 76.01880878 1.724137931 491 2267470 42.14 5845 SAMN36689861 SRR25393995 Spain PRJNA997800 SRP450967 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__R04-18__bin.10 AlvarezOrdonezA_xxxx__R04-19__bin.9 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter harbinensis sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks FerrocinoI_2018__SRS1779539__bin.2 95.69444444 1.759259259 243 2732919 32.65 21380 SRS1779539 SRR4875278 Italy PRJNA352236 SRP092525 NCBI Ferrocino, I., Bellio, A., Giordano, M., Macori, G., Romano, A., Rantsiou, K., Decastelli, L., and Cocolin, L. (2018). Shotgun Metagenomics and Volatilome Profile of the Microbiota of Fermented Sausages. Appl. Environ. Microbiol. 84. 10.1128/AEM.02120-17. FalardeauJ_2023__SRR20811285__bin.2 CM_UNINA_FFOOD__FFOOD_400__bin.7 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks FerrocinoI_2018__SRS1779542__bin.5 76.11111111 0 39 1447161 32.57 67158 SRS1779542 SRR4875282 Italy PRJNA352236 SRP092525 NCBI Ferrocino, I., Bellio, A., Giordano, M., Macori, G., Romano, A., Rantsiou, K., Decastelli, L., and Cocolin, L. (2018). Shotgun Metagenomics and Volatilome Profile of the Microbiota of Fermented Sausages. Appl. Environ. Microbiol. 84. 10.1128/AEM.02120-17. FalardeauJ_2023__SRR20811285__bin.2 CM_UNINA_FFOOD__FFOOD_400__bin.7 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks FerrocinoI_2018__SRS1779545__bin.4 87.33431351 0.815217391 193 1511414 42.27 9680 SRS1779545 SRR4875284 Italy PRJNA352236 SRP092525 NCBI Ferrocino, I., Bellio, A., Giordano, M., Macori, G., Romano, A., Rantsiou, K., Decastelli, L., and Cocolin, L. (2018). Shotgun Metagenomics and Volatilome Profile of the Microbiota of Fermented Sausages. Appl. Environ. Microbiol. 84. 10.1128/AEM.02120-17. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks FerrocinoI_2018__SRS1779545__bin.10 94.44444444 3.599099764 330 2164059 35.18 9304 SRS1779545 SRR4875284 Italy PRJNA352236 SRP092525 NCBI Ferrocino, I., Bellio, A., Giordano, M., Macori, G., Romano, A., Rantsiou, K., Decastelli, L., and Cocolin, L. (2018). Shotgun Metagenomics and Volatilome Profile of the Microbiota of Fermented Sausages. Appl. Environ. Microbiol. 84. 10.1128/AEM.02120-17. MAG_501 FerrocinoI_2018__SRS1779554__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks FerrocinoI_2018__SRS1779545__bin.6 95.06462474 1.851851852 236 2866855 32.8 26922 SRS1779545 SRR4875284 Italy PRJNA352236 SRP092525 NCBI Ferrocino, I., Bellio, A., Giordano, M., Macori, G., Romano, A., Rantsiou, K., Decastelli, L., and Cocolin, L. (2018). Shotgun Metagenomics and Volatilome Profile of the Microbiota of Fermented Sausages. Appl. Environ. Microbiol. 84. 10.1128/AEM.02120-17. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks FerrocinoI_2018__SRS1779545__bin.3 97.75985663 2.407407407 298 2942820 32.38 19400 SRS1779545 SRR4875284 Italy PRJNA352236 SRP092525 NCBI Ferrocino, I., Bellio, A., Giordano, M., Macori, G., Romano, A., Rantsiou, K., Decastelli, L., and Cocolin, L. (2018). Shotgun Metagenomics and Volatilome Profile of the Microbiota of Fermented Sausages. Appl. Environ. Microbiol. 84. 10.1128/AEM.02120-17. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks FerrocinoI_2018__SRS1779545__bin.1 84.01685393 0.187265918 80 1339432 39.11 35885 SRS1779545 SRR4875284 Italy PRJNA352236 SRP092525 NCBI Ferrocino, I., Bellio, A., Giordano, M., Macori, G., Romano, A., Rantsiou, K., Decastelli, L., and Cocolin, L. (2018). Shotgun Metagenomics and Volatilome Profile of the Microbiota of Fermented Sausages. Appl. Environ. Microbiol. 84. 10.1128/AEM.02120-17. MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 FerrocinoI_2018__SRS1779545__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc citreum sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks FerrocinoI_2018__SRS1779548__bin.3 60.86956522 0 12 1091546 40.97 131189 SRS1779548 SRR4875286 Italy PRJNA352236 SRP092525 NCBI Ferrocino, I., Bellio, A., Giordano, M., Macori, G., Romano, A., Rantsiou, K., Decastelli, L., and Cocolin, L. (2018). Shotgun Metagenomics and Volatilome Profile of the Microbiota of Fermented Sausages. Appl. Environ. Microbiol. 84. 10.1128/AEM.02120-17. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 FerrocinoI_2018__SRS1779555__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks FerrocinoI_2018__SRS1779549__bin.5 77.77777778 0.555555556 49 1676942 32.44 53098 SRS1779549 SRR4875287 Italy PRJNA352236 SRP092525 NCBI Ferrocino, I., Bellio, A., Giordano, M., Macori, G., Romano, A., Rantsiou, K., Decastelli, L., and Cocolin, L. (2018). Shotgun Metagenomics and Volatilome Profile of the Microbiota of Fermented Sausages. Appl. Environ. Microbiol. 84. 10.1128/AEM.02120-17. FalardeauJ_2023__SRR20811285__bin.2 CM_UNINA_FFOOD__FFOOD_400__bin.7 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks FerrocinoI_2018__SRS1779550__bin.5 97.91666667 2.032828283 362 2296844 35.08 8774 SRS1779550 SRR4875288 Italy PRJNA352236 SRP092525 NCBI Ferrocino, I., Bellio, A., Giordano, M., Macori, G., Romano, A., Rantsiou, K., Decastelli, L., and Cocolin, L. (2018). Shotgun Metagenomics and Volatilome Profile of the Microbiota of Fermented Sausages. Appl. Environ. Microbiol. 84. 10.1128/AEM.02120-17. MAG_501 FerrocinoI_2018__SRS1779550__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks FerrocinoI_2018__SRS1779550__bin.3 87.02481807 1.018518519 528 2675049 32.86 6842 SRS1779550 SRR4875288 Italy PRJNA352236 SRP092525 NCBI Ferrocino, I., Bellio, A., Giordano, M., Macori, G., Romano, A., Rantsiou, K., Decastelli, L., and Cocolin, L. (2018). Shotgun Metagenomics and Volatilome Profile of the Microbiota of Fermented Sausages. Appl. Environ. Microbiol. 84. 10.1128/AEM.02120-17. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks FerrocinoI_2018__SRS1779551__bin.3 60.86956522 0 10 1074437 40.96 135928 SRS1779551 SRR4875289 Italy PRJNA352236 SRP092525 NCBI Ferrocino, I., Bellio, A., Giordano, M., Macori, G., Romano, A., Rantsiou, K., Decastelli, L., and Cocolin, L. (2018). Shotgun Metagenomics and Volatilome Profile of the Microbiota of Fermented Sausages. Appl. Environ. Microbiol. 84. 10.1128/AEM.02120-17. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 FerrocinoI_2018__SRS1779555__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks FerrocinoI_2018__SRS1779552__bin.2 91.63888889 2.222222222 387 2607992 32.7 9488 SRS1779552 SRR4875290 Italy PRJNA352236 SRP092525 NCBI Ferrocino, I., Bellio, A., Giordano, M., Macori, G., Romano, A., Rantsiou, K., Decastelli, L., and Cocolin, L. (2018). Shotgun Metagenomics and Volatilome Profile of the Microbiota of Fermented Sausages. Appl. Environ. Microbiol. 84. 10.1128/AEM.02120-17. FalardeauJ_2023__SRR20811285__bin.2 CM_UNINA_FFOOD__FFOOD_400__bin.7 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks FerrocinoI_2018__SRS1779554__bin.3 90.08838384 2.225378788 286 2092555 35.21 11222 SRS1779554 SRR4875292 Italy PRJNA352236 SRP092525 NCBI Ferrocino, I., Bellio, A., Giordano, M., Macori, G., Romano, A., Rantsiou, K., Decastelli, L., and Cocolin, L. (2018). Shotgun Metagenomics and Volatilome Profile of the Microbiota of Fermented Sausages. Appl. Environ. Microbiol. 84. 10.1128/AEM.02120-17. MAG_501 FerrocinoI_2018__SRS1779554__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks FerrocinoI_2018__SRS1779554__bin.5 53.62387098 1.28600823 339 1053918 42.56 3260 SRS1779554 SRR4875292 Italy PRJNA352236 SRP092525 NCBI Ferrocino, I., Bellio, A., Giordano, M., Macori, G., Romano, A., Rantsiou, K., Decastelli, L., and Cocolin, L. (2018). Shotgun Metagenomics and Volatilome Profile of the Microbiota of Fermented Sausages. Appl. Environ. Microbiol. 84. 10.1128/AEM.02120-17. CM_UNINA_FFOOD__FFOOD_425__bin.9 CM_UNINA_FFOOD__FFOOD_425__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks FerrocinoI_2018__SRS1779555__bin.3 96.37681159 1.902173913 136 1885515 41.11 19331 SRS1779555 SRR4875293 Italy PRJNA352236 SRP092525 NCBI Ferrocino, I., Bellio, A., Giordano, M., Macori, G., Romano, A., Rantsiou, K., Decastelli, L., and Cocolin, L. (2018). Shotgun Metagenomics and Volatilome Profile of the Microbiota of Fermented Sausages. Appl. Environ. Microbiol. 84. 10.1128/AEM.02120-17. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 FerrocinoI_2018__SRS1779555__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei sausage meat Animal Mixed pork/beef sausage solid none lactic mesophilic 2-4 weeks FranciosaI_2021__SRR12227952__bin.10 85.14 0.7 257 1712631 42.39 9119 SAMN15539509 SRR12227952 Italy PRJNA636619 SRP272053 NCBI Franciosa, I., Ferrocino, I., Giordano, M., Mounier, J., Rantsiou, K., & Cocolin, L. (2021). Specific metagenomic asset drives the spontaneous fermentation of Italian sausages. Food Research International, 144, 110379. https://doi.org/10.1016/j.foodres.2021.110379. CM_UNINA_FFOOD__FFOOD_425__bin.9 CM_UNINA_FFOOD__FFOOD_425__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici sausage italian meat Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks FranciosaI_2021__SRR12227952__bin.4 89.95 0.97 167 3026836 43.82 26778 SAMN15539509 SRR12227952 Italy PRJNA636619 SRP272053 NCBI Franciosa, I., Ferrocino, I., Giordano, M., Mounier, J., Rantsiou, K., & Cocolin, L. (2021). Specific metagenomic asset drives the spontaneous fermentation of Italian sausages. Food Research International, 144, 110379. https://doi.org/10.1016/j.foodres.2021.110379. FranciosaI_2021__SRR12227952__bin.4 FranciosaI_2021__SRR12227952__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraplantarum sausage italian meat Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks FranciosaI_2021__SRR12227952__bin.5 74.84 3.07 14 1210850 36.98 105549 SAMN15539509 SRR12227952 Italy PRJNA636619 SRP272053 NCBI Franciosa, I., Ferrocino, I., Giordano, M., Mounier, J., Rantsiou, K., & Cocolin, L. (2021). Specific metagenomic asset drives the spontaneous fermentation of Italian sausages. Food Research International, 144, 110379. https://doi.org/10.1016/j.foodres.2021.110379. KharnaiorP_2023__SRR22859379__bin.8 FranciosaI_2021__SRR12227963__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus sausage italian meat Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks FranciosaI_2021__SRR12227952__bin.9 85.11 0.16 117 1557713 42.08 16598 SAMN15539509 SRR12227952 Italy PRJNA636619 SRP272053 NCBI Franciosa, I., Ferrocino, I., Giordano, M., Mounier, J., Rantsiou, K., & Cocolin, L. (2021). Specific metagenomic asset drives the spontaneous fermentation of Italian sausages. Food Research International, 144, 110379. https://doi.org/10.1016/j.foodres.2021.110379. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus sausage italian meat Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks FranciosaI_2021__SRR12227953__bin.2 73.44 1.29 345 1298831 37.95 4261 SAMN15539508 SRR12227953 Italy PRJNA636619 SRP272053 NCBI Franciosa, I., Ferrocino, I., Giordano, M., Mounier, J., Rantsiou, K., & Cocolin, L. (2021). Specific metagenomic asset drives the spontaneous fermentation of Italian sausages. Food Research International, 144, 110379. https://doi.org/10.1016/j.foodres.2021.110379. GCF_009913915.1_ASM991391v1_genomic FranciosaI_2021__SRR12227953__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides sausage italian meat Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks FranciosaI_2021__SRR12227953__bin.6 75.61 0.28 117 1347020 41.36 20037 SAMN15539508 SRR12227953 Italy PRJNA636619 SRP272053 NCBI Franciosa, I., Ferrocino, I., Giordano, M., Mounier, J., Rantsiou, K., & Cocolin, L. (2021). Specific metagenomic asset drives the spontaneous fermentation of Italian sausages. Food Research International, 144, 110379. https://doi.org/10.1016/j.foodres.2021.110379. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 AlvarezOrdonezA_xxxx__C05-18__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei sausage italian meat Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks FranciosaI_2021__SRR12227955__bin.3 86.64 0.51 87 1527323 42.24 25018 SAMN15539506 SRR12227955 Italy PRJNA636619 SRP272053 NCBI Franciosa, I., Ferrocino, I., Giordano, M., Mounier, J., Rantsiou, K., & Cocolin, L. (2021). Specific metagenomic asset drives the spontaneous fermentation of Italian sausages. Food Research International, 144, 110379. https://doi.org/10.1016/j.foodres.2021.110379. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus sausage italian meat Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks FranciosaI_2021__SRR12227956__bin.1 91.29 1.29 137 1742093 42.45 20223 SAMN15539505 SRR12227956 Italy PRJNA636619 SRP272053 NCBI Franciosa, I., Ferrocino, I., Giordano, M., Mounier, J., Rantsiou, K., & Cocolin, L. (2021). Specific metagenomic asset drives the spontaneous fermentation of Italian sausages. Food Research International, 144, 110379. https://doi.org/10.1016/j.foodres.2021.110379. CM_UNINA_FFOOD__FFOOD_425__bin.9 CM_UNINA_FFOOD__FFOOD_425__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici sausage italian meat Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks FranciosaI_2021__SRR12227956__bin.2 82.35 3.97 187 1578239 42.24 11666 SAMN15539505 SRR12227956 Italy PRJNA636619 SRP272053 NCBI Franciosa, I., Ferrocino, I., Giordano, M., Mounier, J., Rantsiou, K., & Cocolin, L. (2021). Specific metagenomic asset drives the spontaneous fermentation of Italian sausages. Food Research International, 144, 110379. https://doi.org/10.1016/j.foodres.2021.110379. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 FranciosaI_2021__SRR12227956__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus sausage italian meat Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks FranciosaI_2021__SRR12227956__bin.3 81.42 0.26 37 1376577 36.89 75329 SAMN15539505 SRR12227956 Italy PRJNA636619 SRP272053 NCBI Franciosa, I., Ferrocino, I., Giordano, M., Mounier, J., Rantsiou, K., & Cocolin, L. (2021). Specific metagenomic asset drives the spontaneous fermentation of Italian sausages. Food Research International, 144, 110379. https://doi.org/10.1016/j.foodres.2021.110379. KharnaiorP_2023__SRR22859379__bin.8 FranciosaI_2021__SRR12227963__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus sausage italian meat Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks FranciosaI_2021__SRR12227957__bin.4 59.23 0.02 18 891918 36.72 82993 SAMN15539504 SRR12227957 Italy PRJNA636619 SRP272053 NCBI Franciosa, I., Ferrocino, I., Giordano, M., Mounier, J., Rantsiou, K., & Cocolin, L. (2021). Specific metagenomic asset drives the spontaneous fermentation of Italian sausages. Food Research International, 144, 110379. https://doi.org/10.1016/j.foodres.2021.110379. KharnaiorP_2023__SRR22859379__bin.8 FranciosaI_2021__SRR12227963__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus sausage italian meat Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks FranciosaI_2021__SRR12227957__bin.6 94.7 0.86 185 1553709 37.34 11766 SAMN15539504 SRR12227957 Italy PRJNA636619 SRP272053 NCBI Franciosa, I., Ferrocino, I., Giordano, M., Mounier, J., Rantsiou, K., & Cocolin, L. (2021). Specific metagenomic asset drives the spontaneous fermentation of Italian sausages. Food Research International, 144, 110379. https://doi.org/10.1016/j.foodres.2021.110379. CM_UNINA_FFOOD__FFOOD_229__bin.10 CM_UNINA_FFOOD__FFOOD_229__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc carnosum sausage italian meat Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks FranciosaI_2021__SRR12227958__bin.1 95.65 2.41 174 2336607 36.65 19935 SAMN15539503 SRR12227958 Italy PRJNA636619 SRP272053 NCBI Franciosa, I., Ferrocino, I., Giordano, M., Mounier, J., Rantsiou, K., & Cocolin, L. (2021). Specific metagenomic asset drives the spontaneous fermentation of Italian sausages. Food Research International, 144, 110379. https://doi.org/10.1016/j.foodres.2021.110379. GCF_003946505.1_ASM394650v1_genomic GCF_003946505.1_ASM394650v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus mishanensis sausage italian meat Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks FranciosaI_2021__SRR12227958__bin.9 89.16 2.33 117 1631363 42.28 19318 SAMN15539503 SRR12227958 Italy PRJNA636619 SRP272053 NCBI Franciosa, I., Ferrocino, I., Giordano, M., Mounier, J., Rantsiou, K., & Cocolin, L. (2021). Specific metagenomic asset drives the spontaneous fermentation of Italian sausages. Food Research International, 144, 110379. https://doi.org/10.1016/j.foodres.2021.110379. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus sausage italian meat Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks FranciosaI_2021__SRR12227959__bin.1 65.92 2.5 352 1100725 38.11 3315 SAMN15539502 SRR12227959 Italy PRJNA636619 SRP272053 NCBI Franciosa, I., Ferrocino, I., Giordano, M., Mounier, J., Rantsiou, K., & Cocolin, L. (2021). Specific metagenomic asset drives the spontaneous fermentation of Italian sausages. Food Research International, 144, 110379. https://doi.org/10.1016/j.foodres.2021.110379. KharnaiorP_2023__SRR22859379__bin.8 FranciosaI_2021__SRR12227963__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus sausage italian meat Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks FranciosaI_2021__SRR12227959__bin.2 92.45 0.44 187 1725174 41.15 16381 SAMN15539502 SRR12227959 Italy PRJNA636619 SRP272053 NCBI Franciosa, I., Ferrocino, I., Giordano, M., Mounier, J., Rantsiou, K., & Cocolin, L. (2021). Specific metagenomic asset drives the spontaneous fermentation of Italian sausages. Food Research International, 144, 110379. https://doi.org/10.1016/j.foodres.2021.110379. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 AlvarezOrdonezA_xxxx__C05-18__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei sausage italian meat Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks FranciosaI_2021__SRR12227960__bin.1 69.79 1.41 286 1359212 42.37 5872 SAMN15539514 SRR12227960 Italy PRJNA636619 SRP272053 NCBI Franciosa, I., Ferrocino, I., Giordano, M., Mounier, J., Rantsiou, K., & Cocolin, L. (2021). Specific metagenomic asset drives the spontaneous fermentation of Italian sausages. Food Research International, 144, 110379. https://doi.org/10.1016/j.foodres.2021.110379. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 FranciosaI_2021__SRR12227960__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus sausage italian meat Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks FranciosaI_2021__SRR12227960__bin.7 89.18 0.09 145 1693722 42.59 15857 SAMN15539514 SRR12227960 Italy PRJNA636619 SRP272053 NCBI Franciosa, I., Ferrocino, I., Giordano, M., Mounier, J., Rantsiou, K., & Cocolin, L. (2021). Specific metagenomic asset drives the spontaneous fermentation of Italian sausages. Food Research International, 144, 110379. https://doi.org/10.1016/j.foodres.2021.110379. CM_UNINA_FFOOD__FFOOD_425__bin.9 CM_UNINA_FFOOD__FFOOD_425__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici sausage italian meat Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks FranciosaI_2021__SRR12227960__bin.8 84.14 4.11 251 1764268 41.19 9540 SAMN15539514 SRR12227960 Italy PRJNA636619 SRP272053 NCBI Franciosa, I., Ferrocino, I., Giordano, M., Mounier, J., Rantsiou, K., & Cocolin, L. (2021). Specific metagenomic asset drives the spontaneous fermentation of Italian sausages. Food Research International, 144, 110379. https://doi.org/10.1016/j.foodres.2021.110379. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 FranciosaI_2021__SRR12227960__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei sausage italian meat Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks FranciosaI_2021__SRR12227961__bin.2 54.35 0.03 36 819054 36.64 46185 SAMN15539513 SRR12227961 Italy PRJNA636619 SRP272053 NCBI Franciosa, I., Ferrocino, I., Giordano, M., Mounier, J., Rantsiou, K., & Cocolin, L. (2021). Specific metagenomic asset drives the spontaneous fermentation of Italian sausages. Food Research International, 144, 110379. https://doi.org/10.1016/j.foodres.2021.110379. KharnaiorP_2023__SRR22859379__bin.8 FranciosaI_2021__SRR12227963__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus sausage italian meat Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks FranciosaI_2021__SRR12227962__bin.2 86.1 0.97 108 1626797 42.11 22115 SAMN15539512 SRR12227962 Italy PRJNA636619 SRP272053 NCBI Franciosa, I., Ferrocino, I., Giordano, M., Mounier, J., Rantsiou, K., & Cocolin, L. (2021). Specific metagenomic asset drives the spontaneous fermentation of Italian sausages. Food Research International, 144, 110379. https://doi.org/10.1016/j.foodres.2021.110379. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus sausage italian meat Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks FranciosaI_2021__SRR12227962__bin.3 52.79 1.14 52 972081 41.31 25250 SAMN15539512 SRR12227962 Italy PRJNA636619 SRP272053 NCBI Franciosa, I., Ferrocino, I., Giordano, M., Mounier, J., Rantsiou, K., & Cocolin, L. (2021). Specific metagenomic asset drives the spontaneous fermentation of Italian sausages. Food Research International, 144, 110379. https://doi.org/10.1016/j.foodres.2021.110379. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 DeFilippisF_xxxx__DS_93__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei sausage italian meat Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks FranciosaI_2021__SRR12227963__bin.1 94.97 1.46 119 1817732 42.26 24841 SAMN15539511 SRR12227963 Italy PRJNA636619 SRP272053 NCBI Franciosa, I., Ferrocino, I., Giordano, M., Mounier, J., Rantsiou, K., & Cocolin, L. (2021). Specific metagenomic asset drives the spontaneous fermentation of Italian sausages. Food Research International, 144, 110379. https://doi.org/10.1016/j.foodres.2021.110379. CM_UNINA_FFOOD__FFOOD_425__bin.9 CM_UNINA_FFOOD__FFOOD_425__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici sausage italian meat Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks FranciosaI_2021__SRR12227963__bin.4 84.91 0.19 28 1355221 36.89 144588 SAMN15539511 SRR12227963 Italy PRJNA636619 SRP272053 NCBI Franciosa, I., Ferrocino, I., Giordano, M., Mounier, J., Rantsiou, K., & Cocolin, L. (2021). Specific metagenomic asset drives the spontaneous fermentation of Italian sausages. Food Research International, 144, 110379. https://doi.org/10.1016/j.foodres.2021.110379. KharnaiorP_2023__SRR22859379__bin.8 FranciosaI_2021__SRR12227963__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus sausage italian meat Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks FranciosaI_2021__SRR12227963__bin.8 65.28 3.31 189 1363631 41.2 10261 SAMN15539511 SRR12227963 Italy PRJNA636619 SRP272053 NCBI Franciosa, I., Ferrocino, I., Giordano, M., Mounier, J., Rantsiou, K., & Cocolin, L. (2021). Specific metagenomic asset drives the spontaneous fermentation of Italian sausages. Food Research International, 144, 110379. https://doi.org/10.1016/j.foodres.2021.110379. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 FranciosaI_2021__SRR12227960__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei sausage italian meat Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks FranciosaI_2021__SRR12227964__bin.4 66.09 0.14 305 1103108 37.47 4241 SAMN15539510 SRR12227964 Italy PRJNA636619 SRP272053 NCBI Franciosa, I., Ferrocino, I., Giordano, M., Mounier, J., Rantsiou, K., & Cocolin, L. (2021). Specific metagenomic asset drives the spontaneous fermentation of Italian sausages. Food Research International, 144, 110379. https://doi.org/10.1016/j.foodres.2021.110379. CM_UNINA_FFOOD__FFOOD_229__bin.10 CM_UNINA_FFOOD__FFOOD_229__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc carnosum sausage italian meat Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks FranciosaI_2021__SRR12227964__bin.6 51.8 0.09 16 789785 36.67 82174 SAMN15539510 SRR12227964 Italy PRJNA636619 SRP272053 NCBI Franciosa, I., Ferrocino, I., Giordano, M., Mounier, J., Rantsiou, K., & Cocolin, L. (2021). Specific metagenomic asset drives the spontaneous fermentation of Italian sausages. Food Research International, 144, 110379. https://doi.org/10.1016/j.foodres.2021.110379. KharnaiorP_2023__SRR22859379__bin.8 FranciosaI_2021__SRR12227963__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus sausage italian meat Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks FranciosaI_2021__SRR12227965__bin.3 60.8 0.16 36 939882 36.79 40017 SAMN15539501 SRR12227965 Italy PRJNA636619 SRP272053 NCBI Franciosa, I., Ferrocino, I., Giordano, M., Mounier, J., Rantsiou, K., & Cocolin, L. (2021). Specific metagenomic asset drives the spontaneous fermentation of Italian sausages. Food Research International, 144, 110379. https://doi.org/10.1016/j.foodres.2021.110379. KharnaiorP_2023__SRR22859379__bin.8 FranciosaI_2021__SRR12227963__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus sausage italian meat Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks FranciosaI_2021__SRR12227966__bin.6 85.85 0.54 92 1485678 42.26 22542 SAMN15539500 SRR12227966 Italy PRJNA636619 SRP272053 NCBI Franciosa, I., Ferrocino, I., Giordano, M., Mounier, J., Rantsiou, K., & Cocolin, L. (2021). Specific metagenomic asset drives the spontaneous fermentation of Italian sausages. Food Research International, 144, 110379. https://doi.org/10.1016/j.foodres.2021.110379. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus sausage italian meat Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks GCA_008274985.1_ASM827498v1_genomic 100 0 8 40106795 47.55 5060128 GCA_008274985.1 GCA_008274985.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCA_008274985.1_ASM827498v1_genomic GCA_008274985.1_ASM827498v1_genomic Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Aspergillus Aspergillus sojae meju meju Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 months MAG_15 100 0.25 21 2632650 58.24 226951 ['SAMEA104293489', 'SAMEA104293490', 'SAMEA104293491', 'SAMEA104293493', 'SAMEA104293494', 'SAMEA104293495', 'SAMEA104293482', 'SAMEA104293483', 'SAMEA104293484', 'SAMEA104293485', 'SAMEA104293486', 'SAMEA104293487', 'SAMEA104293488', 'SAMEA4443186', 'SAMEA4443187', 'SAMEA4443188', 'SAMEA4443189', 'SAMEA4443190', 'SAMEA4443191', 'SAMEA4443192', 'SAMEA4443193', 'SAMEA4443194', 'SAMEA4443195', 'SAMEA4443196', 'SAMEA4443197', 'SAMEA4443198', 'SAMEA4443199', 'SAMEA4443200', 'SAMEA4443201', 'SAMEA4443202', 'SAMEA4443203', 'SAMEA104293476', 'SAMEA104293479', 'SAMEA104293480', 'SAMEA104293481'] ['ERR2119696', 'ERR2119697', 'ERR2119698', 'ERR2119700', 'ERR2119701', 'ERR2119702', 'ERR2286738', 'ERR2286739', 'ERR2286740', 'ERR2286741', 'ERR2286742', 'ERR2286743', 'ERR2286744', 'ERR1653129', 'ERR1653130', 'ERR1653131', 'ERR1653132', 'ERR1653133', 'ERR1653134', 'ERR1653135', 'ERR1653136', 'ERR1653137', 'ERR1653138', 'ERR1653139', 'ERR1653140', 'ERR1653141', 'ERR1653142', 'ERR1653143', 'ERR1653144', 'ERR1653145', 'ERR1653146', 'ERR2119683', 'ERR2119686', 'ERR2119687', 'ERR2119688'] ['Ireland', 'United Kingdom', 'France'] ['PRJEB22610', 'PRJEB15432'] ['ERP104300', 'ERP017163'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum kefir milk_kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days MAG_22 98.79 0.66 91 2691977 67.14 49940 ['SAMEA104293489', 'SAMEA104293490', 'SAMEA104293491', 'SAMEA104293493', 'SAMEA104293494', 'SAMEA104293495', 'SAMEA104293482', 'SAMEA104293483', 'SAMEA104293484', 'SAMEA104293485', 'SAMEA104293486', 'SAMEA104293487', 'SAMEA104293488', 'SAMEA4443186', 'SAMEA4443187', 'SAMEA4443188', 'SAMEA4443189', 'SAMEA4443190', 'SAMEA4443191', 'SAMEA4443192', 'SAMEA4443193', 'SAMEA4443194', 'SAMEA4443195', 'SAMEA4443196', 'SAMEA4443197', 'SAMEA4443198', 'SAMEA4443199', 'SAMEA4443200', 'SAMEA4443201', 'SAMEA4443202', 'SAMEA4443203', 'SAMEA104293476', 'SAMEA104293479', 'SAMEA104293480', 'SAMEA104293481'] ['ERR2119696', 'ERR2119697', 'ERR2119698', 'ERR2119700', 'ERR2119701', 'ERR2119702', 'ERR2286738', 'ERR2286739', 'ERR2286740', 'ERR2286741', 'ERR2286742', 'ERR2286743', 'ERR2286744', 'ERR1653129', 'ERR1653130', 'ERR1653131', 'ERR1653132', 'ERR1653133', 'ERR1653134', 'ERR1653135', 'ERR1653136', 'ERR1653137', 'ERR1653138', 'ERR1653139', 'ERR1653140', 'ERR1653141', 'ERR1653142', 'ERR1653143', 'ERR1653144', 'ERR1653145', 'ERR1653146', 'ERR2119683', 'ERR2119686', 'ERR2119687', 'ERR2119688'] ['Ireland', 'United Kingdom', 'France'] ['PRJEB22610', 'PRJEB15432'] ['ERP104300', 'ERP017163'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. CM_UNINA_FFOOD__FFOOD_408__bin.5 CM_UNINA_FFOOD__FFOOD_410__bin.2 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii kefir milk_kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days MAG_28 99.06 0.16 48 2275289 46.29 98801 ['SAMEA104293489', 'SAMEA104293490', 'SAMEA104293491', 'SAMEA104293493', 'SAMEA104293494', 'SAMEA104293495', 'SAMEA104293482', 'SAMEA104293483', 'SAMEA104293484', 'SAMEA104293485', 'SAMEA104293486', 'SAMEA104293487', 'SAMEA104293488', 'SAMEA4443186', 'SAMEA4443187', 'SAMEA4443188', 'SAMEA4443189', 'SAMEA4443190', 'SAMEA4443191', 'SAMEA4443192', 'SAMEA4443193', 'SAMEA4443194', 'SAMEA4443195', 'SAMEA4443196', 'SAMEA4443197', 'SAMEA4443198', 'SAMEA4443199', 'SAMEA4443200', 'SAMEA4443201', 'SAMEA4443202', 'SAMEA4443203', 'SAMEA104293476', 'SAMEA104293479', 'SAMEA104293480', 'SAMEA104293481'] ['ERR2119696', 'ERR2119697', 'ERR2119698', 'ERR2119700', 'ERR2119701', 'ERR2119702', 'ERR2286738', 'ERR2286739', 'ERR2286740', 'ERR2286741', 'ERR2286742', 'ERR2286743', 'ERR2286744', 'ERR1653129', 'ERR1653130', 'ERR1653131', 'ERR1653132', 'ERR1653133', 'ERR1653134', 'ERR1653135', 'ERR1653136', 'ERR1653137', 'ERR1653138', 'ERR1653139', 'ERR1653140', 'ERR1653141', 'ERR1653142', 'ERR1653143', 'ERR1653144', 'ERR1653145', 'ERR1653146', 'ERR2119683', 'ERR2119686', 'ERR2119687', 'ERR2119688'] ['Ireland', 'United Kingdom', 'France'] ['PRJEB22610', 'PRJEB15432'] ['ERP104300', 'ERP017163'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis kefir milk_kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days MAG_39 52.65 3.32 584 1689130 41.68 3001 ['SAMEA104293489', 'SAMEA104293490', 'SAMEA104293491', 'SAMEA104293493', 'SAMEA104293494', 'SAMEA104293495', 'SAMEA104293482', 'SAMEA104293483', 'SAMEA104293484', 'SAMEA104293485', 'SAMEA104293486', 'SAMEA104293487', 'SAMEA104293488', 'SAMEA4443186', 'SAMEA4443187', 'SAMEA4443188', 'SAMEA4443189', 'SAMEA4443190', 'SAMEA4443191', 'SAMEA4443192', 'SAMEA4443193', 'SAMEA4443194', 'SAMEA4443195', 'SAMEA4443196', 'SAMEA4443197', 'SAMEA4443198', 'SAMEA4443199', 'SAMEA4443200', 'SAMEA4443201', 'SAMEA4443202', 'SAMEA4443203', 'SAMEA104293476', 'SAMEA104293479', 'SAMEA104293480', 'SAMEA104293481'] ['ERR2119696', 'ERR2119697', 'ERR2119698', 'ERR2119700', 'ERR2119701', 'ERR2119702', 'ERR2286738', 'ERR2286739', 'ERR2286740', 'ERR2286741', 'ERR2286742', 'ERR2286743', 'ERR2286744', 'ERR1653129', 'ERR1653130', 'ERR1653131', 'ERR1653132', 'ERR1653133', 'ERR1653134', 'ERR1653135', 'ERR1653136', 'ERR1653137', 'ERR1653138', 'ERR1653139', 'ERR1653140', 'ERR1653141', 'ERR1653142', 'ERR1653143', 'ERR1653144', 'ERR1653145', 'ERR1653146', 'ERR2119683', 'ERR2119686', 'ERR2119687', 'ERR2119688'] ['Ireland', 'United Kingdom', 'France'] ['PRJEB22610', 'PRJEB15432'] ['ERP104300', 'ERP017163'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. SalgadoTS_2021__SRR13801804__bin.3 MAG_39 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kefiri kefir milk_kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days MAG_58 67.43 1.03 352 1356639 50.99 4372 ['SAMEA104293489', 'SAMEA104293490', 'SAMEA104293491', 'SAMEA104293493', 'SAMEA104293494', 'SAMEA104293495', 'SAMEA104293482', 'SAMEA104293483', 'SAMEA104293484', 'SAMEA104293485', 'SAMEA104293486', 'SAMEA104293487', 'SAMEA104293488', 'SAMEA4443186', 'SAMEA4443187', 'SAMEA4443188', 'SAMEA4443189', 'SAMEA4443190', 'SAMEA4443191', 'SAMEA4443192', 'SAMEA4443193', 'SAMEA4443194', 'SAMEA4443195', 'SAMEA4443196', 'SAMEA4443197', 'SAMEA4443198', 'SAMEA4443199', 'SAMEA4443200', 'SAMEA4443201', 'SAMEA4443202', 'SAMEA4443203', 'SAMEA104293476', 'SAMEA104293479', 'SAMEA104293480', 'SAMEA104293481'] ['ERR2119696', 'ERR2119697', 'ERR2119698', 'ERR2119700', 'ERR2119701', 'ERR2119702', 'ERR2286738', 'ERR2286739', 'ERR2286740', 'ERR2286741', 'ERR2286742', 'ERR2286743', 'ERR2286744', 'ERR1653129', 'ERR1653130', 'ERR1653131', 'ERR1653132', 'ERR1653133', 'ERR1653134', 'ERR1653135', 'ERR1653136', 'ERR1653137', 'ERR1653138', 'ERR1653139', 'ERR1653140', 'ERR1653141', 'ERR1653142', 'ERR1653143', 'ERR1653144', 'ERR1653145', 'ERR1653146', 'ERR2119683', 'ERR2119686', 'ERR2119687', 'ERR2119688'] ['Ireland', 'United Kingdom', 'France'] ['PRJEB22610', 'PRJEB15432'] ['ERP104300', 'ERP017163'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_006740305.1_ASM674030v1_genomic MAG_58 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii kefir milk_kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days MAG_64 74.64 0.02 394 1505296 53.14 4474 ['SAMEA104293489', 'SAMEA104293490', 'SAMEA104293491', 'SAMEA104293493', 'SAMEA104293494', 'SAMEA104293495', 'SAMEA104293482', 'SAMEA104293483', 'SAMEA104293484', 'SAMEA104293485', 'SAMEA104293486', 'SAMEA104293487', 'SAMEA104293488', 'SAMEA4443186', 'SAMEA4443187', 'SAMEA4443188', 'SAMEA4443189', 'SAMEA4443190', 'SAMEA4443191', 'SAMEA4443192', 'SAMEA4443193', 'SAMEA4443194', 'SAMEA4443195', 'SAMEA4443196', 'SAMEA4443197', 'SAMEA4443198', 'SAMEA4443199', 'SAMEA4443200', 'SAMEA4443201', 'SAMEA4443202', 'SAMEA4443203', 'SAMEA104293476', 'SAMEA104293479', 'SAMEA104293480', 'SAMEA104293481'] ['ERR2119696', 'ERR2119697', 'ERR2119698', 'ERR2119700', 'ERR2119701', 'ERR2119702', 'ERR2286738', 'ERR2286739', 'ERR2286740', 'ERR2286741', 'ERR2286742', 'ERR2286743', 'ERR2286744', 'ERR1653129', 'ERR1653130', 'ERR1653131', 'ERR1653132', 'ERR1653133', 'ERR1653134', 'ERR1653135', 'ERR1653136', 'ERR1653137', 'ERR1653138', 'ERR1653139', 'ERR1653140', 'ERR1653141', 'ERR1653142', 'ERR1653143', 'ERR1653144', 'ERR1653145', 'ERR1653146', 'ERR2119683', 'ERR2119686', 'ERR2119687', 'ERR2119688'] ['Ireland', 'United Kingdom', 'France'] ['PRJEB22610', 'PRJEB15432'] ['ERP104300', 'ERP017163'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746839__bin.4 MAG_355 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum kefir milk_kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days MAG_119 76.22 0.15 323 1459609 39.45 5307 ['SAMEA104293489', 'SAMEA104293490', 'SAMEA104293491', 'SAMEA104293493', 'SAMEA104293494', 'SAMEA104293495', 'SAMEA104293482', 'SAMEA104293483', 'SAMEA104293484', 'SAMEA104293485', 'SAMEA104293486', 'SAMEA104293487', 'SAMEA104293488', 'SAMEA4443186', 'SAMEA4443187', 'SAMEA4443188', 'SAMEA4443189', 'SAMEA4443190', 'SAMEA4443191', 'SAMEA4443192', 'SAMEA4443193', 'SAMEA4443194', 'SAMEA4443195', 'SAMEA4443196', 'SAMEA4443197', 'SAMEA4443198', 'SAMEA4443199', 'SAMEA4443200', 'SAMEA4443201', 'SAMEA4443202', 'SAMEA4443203', 'SAMEA104293476', 'SAMEA104293479', 'SAMEA104293480', 'SAMEA104293481'] ['ERR2119696', 'ERR2119697', 'ERR2119698', 'ERR2119700', 'ERR2119701', 'ERR2119702', 'ERR2286738', 'ERR2286739', 'ERR2286740', 'ERR2286741', 'ERR2286742', 'ERR2286743', 'ERR2286744', 'ERR1653129', 'ERR1653130', 'ERR1653131', 'ERR1653132', 'ERR1653133', 'ERR1653134', 'ERR1653135', 'ERR1653136', 'ERR1653137', 'ERR1653138', 'ERR1653139', 'ERR1653140', 'ERR1653141', 'ERR1653142', 'ERR1653143', 'ERR1653144', 'ERR1653145', 'ERR1653146', 'ERR2119683', 'ERR2119686', 'ERR2119687', 'ERR2119688'] ['Ireland', 'United Kingdom', 'France'] ['PRJEB22610', 'PRJEB15432'] ['ERP104300', 'ERP017163'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. Wy2_bin.circ.1 MAG_119 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus kefir milk_kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days MAG_144 85.36 0 86 1264266 36.23 20818 ['SAMEA104293489', 'SAMEA104293490', 'SAMEA104293491', 'SAMEA104293493', 'SAMEA104293494', 'SAMEA104293495', 'SAMEA104293482', 'SAMEA104293483', 'SAMEA104293484', 'SAMEA104293485', 'SAMEA104293486', 'SAMEA104293487', 'SAMEA104293488', 'SAMEA4443186', 'SAMEA4443187', 'SAMEA4443188', 'SAMEA4443189', 'SAMEA4443190', 'SAMEA4443191', 'SAMEA4443192', 'SAMEA4443193', 'SAMEA4443194', 'SAMEA4443195', 'SAMEA4443196', 'SAMEA4443197', 'SAMEA4443198', 'SAMEA4443199', 'SAMEA4443200', 'SAMEA4443201', 'SAMEA4443202', 'SAMEA4443203', 'SAMEA104293476', 'SAMEA104293479', 'SAMEA104293480', 'SAMEA104293481'] ['ERR2119696', 'ERR2119697', 'ERR2119698', 'ERR2119700', 'ERR2119701', 'ERR2119702', 'ERR2286738', 'ERR2286739', 'ERR2286740', 'ERR2286741', 'ERR2286742', 'ERR2286743', 'ERR2286744', 'ERR1653129', 'ERR1653130', 'ERR1653131', 'ERR1653132', 'ERR1653133', 'ERR1653134', 'ERR1653135', 'ERR1653136', 'ERR1653137', 'ERR1653138', 'ERR1653139', 'ERR1653140', 'ERR1653141', 'ERR1653142', 'ERR1653143', 'ERR1653144', 'ERR1653145', 'ERR1653146', 'ERR2119683', 'ERR2119686', 'ERR2119687', 'ERR2119688'] ['Ireland', 'United Kingdom', 'France'] ['PRJEB22610', 'PRJEB15432'] ['ERP104300', 'ERP017163'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746979__bin.3 WalshL_xxxx__I5__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir milk_kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days MAG_151 97.73 0 78 1608627 50.54 31541 ['SAMEA104293489', 'SAMEA104293490', 'SAMEA104293491', 'SAMEA104293493', 'SAMEA104293494', 'SAMEA104293495', 'SAMEA104293482', 'SAMEA104293483', 'SAMEA104293484', 'SAMEA104293485', 'SAMEA104293486', 'SAMEA104293487', 'SAMEA104293488', 'SAMEA4443186', 'SAMEA4443187', 'SAMEA4443188', 'SAMEA4443189', 'SAMEA4443190', 'SAMEA4443191', 'SAMEA4443192', 'SAMEA4443193', 'SAMEA4443194', 'SAMEA4443195', 'SAMEA4443196', 'SAMEA4443197', 'SAMEA4443198', 'SAMEA4443199', 'SAMEA4443200', 'SAMEA4443201', 'SAMEA4443202', 'SAMEA4443203', 'SAMEA104293476', 'SAMEA104293479', 'SAMEA104293480', 'SAMEA104293481'] ['ERR2119696', 'ERR2119697', 'ERR2119698', 'ERR2119700', 'ERR2119701', 'ERR2119702', 'ERR2286738', 'ERR2286739', 'ERR2286740', 'ERR2286741', 'ERR2286742', 'ERR2286743', 'ERR2286744', 'ERR1653129', 'ERR1653130', 'ERR1653131', 'ERR1653132', 'ERR1653133', 'ERR1653134', 'ERR1653135', 'ERR1653136', 'ERR1653137', 'ERR1653138', 'ERR1653139', 'ERR1653140', 'ERR1653141', 'ERR1653142', 'ERR1653143', 'ERR1653144', 'ERR1653145', 'ERR1653146', 'ERR2119683', 'ERR2119686', 'ERR2119687', 'ERR2119688'] ['Ireland', 'United Kingdom', 'France'] ['PRJEB22610', 'PRJEB15432'] ['ERP104300', 'ERP017163'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii kefir milk_kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days MAG_304 64.66 0.76 330 1287116 36.5 4417 ['SAMEA104293489', 'SAMEA104293490', 'SAMEA104293491', 'SAMEA104293493', 'SAMEA104293494', 'SAMEA104293495', 'SAMEA104293482', 'SAMEA104293483', 'SAMEA104293484', 'SAMEA104293485', 'SAMEA104293486', 'SAMEA104293487', 'SAMEA104293488', 'SAMEA4443186', 'SAMEA4443187', 'SAMEA4443188', 'SAMEA4443189', 'SAMEA4443190', 'SAMEA4443191', 'SAMEA4443192', 'SAMEA4443193', 'SAMEA4443194', 'SAMEA4443195', 'SAMEA4443196', 'SAMEA4443197', 'SAMEA4443198', 'SAMEA4443199', 'SAMEA4443200', 'SAMEA4443201', 'SAMEA4443202', 'SAMEA4443203', 'SAMEA104293476', 'SAMEA104293479', 'SAMEA104293480', 'SAMEA104293481'] ['ERR2119696', 'ERR2119697', 'ERR2119698', 'ERR2119700', 'ERR2119701', 'ERR2119702', 'ERR2286738', 'ERR2286739', 'ERR2286740', 'ERR2286741', 'ERR2286742', 'ERR2286743', 'ERR2286744', 'ERR1653129', 'ERR1653130', 'ERR1653131', 'ERR1653132', 'ERR1653133', 'ERR1653134', 'ERR1653135', 'ERR1653136', 'ERR1653137', 'ERR1653138', 'ERR1653139', 'ERR1653140', 'ERR1653141', 'ERR1653142', 'ERR1653143', 'ERR1653144', 'ERR1653145', 'ERR1653146', 'ERR2119683', 'ERR2119686', 'ERR2119687', 'ERR2119688'] ['Ireland', 'United Kingdom', 'France'] ['PRJEB22610', 'PRJEB15432'] ['ERP104300', 'ERP017163'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746979__bin.3 MAG_304 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus kefir milk_kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days MAG_305 67.87 7.99 505 1979026 37.42 4633 ['SAMEA104293489', 'SAMEA104293490', 'SAMEA104293491', 'SAMEA104293493', 'SAMEA104293494', 'SAMEA104293495', 'SAMEA104293482', 'SAMEA104293483', 'SAMEA104293484', 'SAMEA104293485', 'SAMEA104293486', 'SAMEA104293487', 'SAMEA104293488', 'SAMEA4443186', 'SAMEA4443187', 'SAMEA4443188', 'SAMEA4443189', 'SAMEA4443190', 'SAMEA4443191', 'SAMEA4443192', 'SAMEA4443193', 'SAMEA4443194', 'SAMEA4443195', 'SAMEA4443196', 'SAMEA4443197', 'SAMEA4443198', 'SAMEA4443199', 'SAMEA4443200', 'SAMEA4443201', 'SAMEA4443202', 'SAMEA4443203', 'SAMEA104293476', 'SAMEA104293479', 'SAMEA104293480', 'SAMEA104293481'] ['ERR2119696', 'ERR2119697', 'ERR2119698', 'ERR2119700', 'ERR2119701', 'ERR2119702', 'ERR2286738', 'ERR2286739', 'ERR2286740', 'ERR2286741', 'ERR2286742', 'ERR2286743', 'ERR2286744', 'ERR1653129', 'ERR1653130', 'ERR1653131', 'ERR1653132', 'ERR1653133', 'ERR1653134', 'ERR1653135', 'ERR1653136', 'ERR1653137', 'ERR1653138', 'ERR1653139', 'ERR1653140', 'ERR1653141', 'ERR1653142', 'ERR1653143', 'ERR1653144', 'ERR1653145', 'ERR1653146', 'ERR2119683', 'ERR2119686', 'ERR2119687', 'ERR2119688'] ['Ireland', 'United Kingdom', 'France'] ['PRJEB22610', 'PRJEB15432'] ['ERP104300', 'ERP017163'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_S8 MAG_305 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir milk_kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days MAG_349 97.51 0 33 2002730 54.13 86187 ['SAMEA104293489', 'SAMEA104293490', 'SAMEA104293491', 'SAMEA104293493', 'SAMEA104293494', 'SAMEA104293495', 'SAMEA104293482', 'SAMEA104293483', 'SAMEA104293484', 'SAMEA104293485', 'SAMEA104293486', 'SAMEA104293487', 'SAMEA104293488', 'SAMEA4443186', 'SAMEA4443187', 'SAMEA4443188', 'SAMEA4443189', 'SAMEA4443190', 'SAMEA4443191', 'SAMEA4443192', 'SAMEA4443193', 'SAMEA4443194', 'SAMEA4443195', 'SAMEA4443196', 'SAMEA4443197', 'SAMEA4443198', 'SAMEA4443199', 'SAMEA4443200', 'SAMEA4443201', 'SAMEA4443202', 'SAMEA4443203', 'SAMEA104293476', 'SAMEA104293479', 'SAMEA104293480', 'SAMEA104293481'] ['ERR2119696', 'ERR2119697', 'ERR2119698', 'ERR2119700', 'ERR2119701', 'ERR2119702', 'ERR2286738', 'ERR2286739', 'ERR2286740', 'ERR2286741', 'ERR2286742', 'ERR2286743', 'ERR2286744', 'ERR1653129', 'ERR1653130', 'ERR1653131', 'ERR1653132', 'ERR1653133', 'ERR1653134', 'ERR1653135', 'ERR1653136', 'ERR1653137', 'ERR1653138', 'ERR1653139', 'ERR1653140', 'ERR1653141', 'ERR1653142', 'ERR1653143', 'ERR1653144', 'ERR1653145', 'ERR1653146', 'ERR2119683', 'ERR2119686', 'ERR2119687', 'ERR2119688'] ['Ireland', 'United Kingdom', 'France'] ['PRJEB22610', 'PRJEB15432'] ['ERP104300', 'ERP017163'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MortensenS_xxxx__WK032-1-L-48h-03B6_S34__bin.2 MAG_349 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter pasteurianus kefir milk_kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days MAG_350 99.47 0 156 1513001 38 15097 ['SAMEA104293489', 'SAMEA104293490', 'SAMEA104293491', 'SAMEA104293493', 'SAMEA104293494', 'SAMEA104293495', 'SAMEA104293482', 'SAMEA104293483', 'SAMEA104293484', 'SAMEA104293485', 'SAMEA104293486', 'SAMEA104293487', 'SAMEA104293488', 'SAMEA4443186', 'SAMEA4443187', 'SAMEA4443188', 'SAMEA4443189', 'SAMEA4443190', 'SAMEA4443191', 'SAMEA4443192', 'SAMEA4443193', 'SAMEA4443194', 'SAMEA4443195', 'SAMEA4443196', 'SAMEA4443197', 'SAMEA4443198', 'SAMEA4443199', 'SAMEA4443200', 'SAMEA4443201', 'SAMEA4443202', 'SAMEA4443203', 'SAMEA104293476', 'SAMEA104293479', 'SAMEA104293480', 'SAMEA104293481'] ['ERR2119696', 'ERR2119697', 'ERR2119698', 'ERR2119700', 'ERR2119701', 'ERR2119702', 'ERR2286738', 'ERR2286739', 'ERR2286740', 'ERR2286741', 'ERR2286742', 'ERR2286743', 'ERR2286744', 'ERR1653129', 'ERR1653130', 'ERR1653131', 'ERR1653132', 'ERR1653133', 'ERR1653134', 'ERR1653135', 'ERR1653136', 'ERR1653137', 'ERR1653138', 'ERR1653139', 'ERR1653140', 'ERR1653141', 'ERR1653142', 'ERR1653143', 'ERR1653144', 'ERR1653145', 'ERR1653146', 'ERR2119683', 'ERR2119686', 'ERR2119687', 'ERR2119688'] ['Ireland', 'United Kingdom', 'France'] ['PRJEB22610', 'PRJEB15432'] ['ERP104300', 'ERP017163'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_FFoQSI_3__VB09-26__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides kefir milk_kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days MAG_351 92.67 0.74 251 1505601 39.73 7699 ['SAMEA104293489', 'SAMEA104293490', 'SAMEA104293491', 'SAMEA104293493', 'SAMEA104293494', 'SAMEA104293495', 'SAMEA104293482', 'SAMEA104293483', 'SAMEA104293484', 'SAMEA104293485', 'SAMEA104293486', 'SAMEA104293487', 'SAMEA104293488', 'SAMEA4443186', 'SAMEA4443187', 'SAMEA4443188', 'SAMEA4443189', 'SAMEA4443190', 'SAMEA4443191', 'SAMEA4443192', 'SAMEA4443193', 'SAMEA4443194', 'SAMEA4443195', 'SAMEA4443196', 'SAMEA4443197', 'SAMEA4443198', 'SAMEA4443199', 'SAMEA4443200', 'SAMEA4443201', 'SAMEA4443202', 'SAMEA4443203', 'SAMEA104293476', 'SAMEA104293479', 'SAMEA104293480', 'SAMEA104293481'] ['ERR2119696', 'ERR2119697', 'ERR2119698', 'ERR2119700', 'ERR2119701', 'ERR2119702', 'ERR2286738', 'ERR2286739', 'ERR2286740', 'ERR2286741', 'ERR2286742', 'ERR2286743', 'ERR2286744', 'ERR1653129', 'ERR1653130', 'ERR1653131', 'ERR1653132', 'ERR1653133', 'ERR1653134', 'ERR1653135', 'ERR1653136', 'ERR1653137', 'ERR1653138', 'ERR1653139', 'ERR1653140', 'ERR1653141', 'ERR1653142', 'ERR1653143', 'ERR1653144', 'ERR1653145', 'ERR1653146', 'ERR2119683', 'ERR2119686', 'ERR2119687', 'ERR2119688'] ['Ireland', 'United Kingdom', 'France'] ['PRJEB22610', 'PRJEB15432'] ['ERP104300', 'ERP017163'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. Wy2_bin.circ.1 MAG_392 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus kefir milk_kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days MAG_352 97.36 0.19 160 4614697 42.12 49285 ['SAMEA104293489', 'SAMEA104293490', 'SAMEA104293491', 'SAMEA104293493', 'SAMEA104293494', 'SAMEA104293495', 'SAMEA104293482', 'SAMEA104293483', 'SAMEA104293484', 'SAMEA104293485', 'SAMEA104293486', 'SAMEA104293487', 'SAMEA104293488', 'SAMEA4443186', 'SAMEA4443187', 'SAMEA4443188', 'SAMEA4443189', 'SAMEA4443190', 'SAMEA4443191', 'SAMEA4443192', 'SAMEA4443193', 'SAMEA4443194', 'SAMEA4443195', 'SAMEA4443196', 'SAMEA4443197', 'SAMEA4443198', 'SAMEA4443199', 'SAMEA4443200', 'SAMEA4443201', 'SAMEA4443202', 'SAMEA4443203', 'SAMEA104293476', 'SAMEA104293479', 'SAMEA104293480', 'SAMEA104293481'] ['ERR2119696', 'ERR2119697', 'ERR2119698', 'ERR2119700', 'ERR2119701', 'ERR2119702', 'ERR2286738', 'ERR2286739', 'ERR2286740', 'ERR2286741', 'ERR2286742', 'ERR2286743', 'ERR2286744', 'ERR1653129', 'ERR1653130', 'ERR1653131', 'ERR1653132', 'ERR1653133', 'ERR1653134', 'ERR1653135', 'ERR1653136', 'ERR1653137', 'ERR1653138', 'ERR1653139', 'ERR1653140', 'ERR1653141', 'ERR1653142', 'ERR1653143', 'ERR1653144', 'ERR1653145', 'ERR1653146', 'ERR2119683', 'ERR2119686', 'ERR2119687', 'ERR2119688'] ['Ireland', 'United Kingdom', 'France'] ['PRJEB22610', 'PRJEB15432'] ['ERP104300', 'ERP017163'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_352 MAG_352 Bacteroidota;Bacteroidia;Bacteroidales;Bacteroidaceae;Phocaeicola Phocaeicola vulgatus kefir milk_kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days MAG_353 99.46 0 75 2640655 46.65 67904 ['SAMEA104293489', 'SAMEA104293490', 'SAMEA104293491', 'SAMEA104293493', 'SAMEA104293494', 'SAMEA104293495', 'SAMEA104293482', 'SAMEA104293483', 'SAMEA104293484', 'SAMEA104293485', 'SAMEA104293486', 'SAMEA104293487', 'SAMEA104293488', 'SAMEA4443186', 'SAMEA4443187', 'SAMEA4443188', 'SAMEA4443189', 'SAMEA4443190', 'SAMEA4443191', 'SAMEA4443192', 'SAMEA4443193', 'SAMEA4443194', 'SAMEA4443195', 'SAMEA4443196', 'SAMEA4443197', 'SAMEA4443198', 'SAMEA4443199', 'SAMEA4443200', 'SAMEA4443201', 'SAMEA4443202', 'SAMEA4443203', 'SAMEA104293476', 'SAMEA104293479', 'SAMEA104293480', 'SAMEA104293481'] ['ERR2119696', 'ERR2119697', 'ERR2119698', 'ERR2119700', 'ERR2119701', 'ERR2119702', 'ERR2286738', 'ERR2286739', 'ERR2286740', 'ERR2286741', 'ERR2286742', 'ERR2286743', 'ERR2286744', 'ERR1653129', 'ERR1653130', 'ERR1653131', 'ERR1653132', 'ERR1653133', 'ERR1653134', 'ERR1653135', 'ERR1653136', 'ERR1653137', 'ERR1653138', 'ERR1653139', 'ERR1653140', 'ERR1653141', 'ERR1653142', 'ERR1653143', 'ERR1653144', 'ERR1653145', 'ERR1653146', 'ERR2119683', 'ERR2119686', 'ERR2119687', 'ERR2119688'] ['Ireland', 'United Kingdom', 'France'] ['PRJEB22610', 'PRJEB15432'] ['ERP104300', 'ERP017163'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei kefir milk_kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days MAG_354 100 0 26 2152613 59.28 452566 ['SAMEA104293489', 'SAMEA104293490', 'SAMEA104293491', 'SAMEA104293493', 'SAMEA104293494', 'SAMEA104293495', 'SAMEA104293482', 'SAMEA104293483', 'SAMEA104293484', 'SAMEA104293485', 'SAMEA104293486', 'SAMEA104293487', 'SAMEA104293488', 'SAMEA4443186', 'SAMEA4443187', 'SAMEA4443188', 'SAMEA4443189', 'SAMEA4443190', 'SAMEA4443191', 'SAMEA4443192', 'SAMEA4443193', 'SAMEA4443194', 'SAMEA4443195', 'SAMEA4443196', 'SAMEA4443197', 'SAMEA4443198', 'SAMEA4443199', 'SAMEA4443200', 'SAMEA4443201', 'SAMEA4443202', 'SAMEA4443203', 'SAMEA104293476', 'SAMEA104293479', 'SAMEA104293480', 'SAMEA104293481'] ['ERR2119696', 'ERR2119697', 'ERR2119698', 'ERR2119700', 'ERR2119701', 'ERR2119702', 'ERR2286738', 'ERR2286739', 'ERR2286740', 'ERR2286741', 'ERR2286742', 'ERR2286743', 'ERR2286744', 'ERR1653129', 'ERR1653130', 'ERR1653131', 'ERR1653132', 'ERR1653133', 'ERR1653134', 'ERR1653135', 'ERR1653136', 'ERR1653137', 'ERR1653138', 'ERR1653139', 'ERR1653140', 'ERR1653141', 'ERR1653142', 'ERR1653143', 'ERR1653144', 'ERR1653145', 'ERR1653146', 'ERR2119683', 'ERR2119686', 'ERR2119687', 'ERR2119688'] ['Ireland', 'United Kingdom', 'France'] ['PRJEB22610', 'PRJEB15432'] ['ERP104300', 'ERP017163'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_354 MAG_354 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium adolescentis kefir milk_kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days MAG_355 98.63 0 56 1723069 53.17 44766 ['SAMEA104293489', 'SAMEA104293490', 'SAMEA104293491', 'SAMEA104293493', 'SAMEA104293494', 'SAMEA104293495', 'SAMEA104293482', 'SAMEA104293483', 'SAMEA104293484', 'SAMEA104293485', 'SAMEA104293486', 'SAMEA104293487', 'SAMEA104293488', 'SAMEA4443186', 'SAMEA4443187', 'SAMEA4443188', 'SAMEA4443189', 'SAMEA4443190', 'SAMEA4443191', 'SAMEA4443192', 'SAMEA4443193', 'SAMEA4443194', 'SAMEA4443195', 'SAMEA4443196', 'SAMEA4443197', 'SAMEA4443198', 'SAMEA4443199', 'SAMEA4443200', 'SAMEA4443201', 'SAMEA4443202', 'SAMEA4443203', 'SAMEA104293476', 'SAMEA104293479', 'SAMEA104293480', 'SAMEA104293481'] ['ERR2119696', 'ERR2119697', 'ERR2119698', 'ERR2119700', 'ERR2119701', 'ERR2119702', 'ERR2286738', 'ERR2286739', 'ERR2286740', 'ERR2286741', 'ERR2286742', 'ERR2286743', 'ERR2286744', 'ERR1653129', 'ERR1653130', 'ERR1653131', 'ERR1653132', 'ERR1653133', 'ERR1653134', 'ERR1653135', 'ERR1653136', 'ERR1653137', 'ERR1653138', 'ERR1653139', 'ERR1653140', 'ERR1653141', 'ERR1653142', 'ERR1653143', 'ERR1653144', 'ERR1653145', 'ERR1653146', 'ERR2119683', 'ERR2119686', 'ERR2119687', 'ERR2119688'] ['Ireland', 'United Kingdom', 'France'] ['PRJEB22610', 'PRJEB15432'] ['ERP104300', 'ERP017163'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746839__bin.4 MAG_355 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum kefir milk_kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days MAG_356 98.51 0 153 2833513 61.7 32183 ['SAMEA104293489', 'SAMEA104293490', 'SAMEA104293491', 'SAMEA104293493', 'SAMEA104293494', 'SAMEA104293495', 'SAMEA104293482', 'SAMEA104293483', 'SAMEA104293484', 'SAMEA104293485', 'SAMEA104293486', 'SAMEA104293487', 'SAMEA104293488', 'SAMEA4443186', 'SAMEA4443187', 'SAMEA4443188', 'SAMEA4443189', 'SAMEA4443190', 'SAMEA4443191', 'SAMEA4443192', 'SAMEA4443193', 'SAMEA4443194', 'SAMEA4443195', 'SAMEA4443196', 'SAMEA4443197', 'SAMEA4443198', 'SAMEA4443199', 'SAMEA4443200', 'SAMEA4443201', 'SAMEA4443202', 'SAMEA4443203', 'SAMEA104293476', 'SAMEA104293479', 'SAMEA104293480', 'SAMEA104293481'] ['ERR2119696', 'ERR2119697', 'ERR2119698', 'ERR2119700', 'ERR2119701', 'ERR2119702', 'ERR2286738', 'ERR2286739', 'ERR2286740', 'ERR2286741', 'ERR2286742', 'ERR2286743', 'ERR2286744', 'ERR1653129', 'ERR1653130', 'ERR1653131', 'ERR1653132', 'ERR1653133', 'ERR1653134', 'ERR1653135', 'ERR1653136', 'ERR1653137', 'ERR1653138', 'ERR1653139', 'ERR1653140', 'ERR1653141', 'ERR1653142', 'ERR1653143', 'ERR1653144', 'ERR1653145', 'ERR1653146', 'ERR2119683', 'ERR2119686', 'ERR2119687', 'ERR2119688'] ['Ireland', 'United Kingdom', 'France'] ['PRJEB22610', 'PRJEB15432'] ['ERP104300', 'ERP017163'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_356 MAG_356 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter medellinensis kefir milk_kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days MAG_357 78.57 0 58 1260161 36.6 70637 ['SAMEA104293489', 'SAMEA104293490', 'SAMEA104293491', 'SAMEA104293493', 'SAMEA104293494', 'SAMEA104293495', 'SAMEA104293482', 'SAMEA104293483', 'SAMEA104293484', 'SAMEA104293485', 'SAMEA104293486', 'SAMEA104293487', 'SAMEA104293488', 'SAMEA4443186', 'SAMEA4443187', 'SAMEA4443188', 'SAMEA4443189', 'SAMEA4443190', 'SAMEA4443191', 'SAMEA4443192', 'SAMEA4443193', 'SAMEA4443194', 'SAMEA4443195', 'SAMEA4443196', 'SAMEA4443197', 'SAMEA4443198', 'SAMEA4443199', 'SAMEA4443200', 'SAMEA4443201', 'SAMEA4443202', 'SAMEA4443203', 'SAMEA104293476', 'SAMEA104293479', 'SAMEA104293480', 'SAMEA104293481'] ['ERR2119696', 'ERR2119697', 'ERR2119698', 'ERR2119700', 'ERR2119701', 'ERR2119702', 'ERR2286738', 'ERR2286739', 'ERR2286740', 'ERR2286741', 'ERR2286742', 'ERR2286743', 'ERR2286744', 'ERR1653129', 'ERR1653130', 'ERR1653131', 'ERR1653132', 'ERR1653133', 'ERR1653134', 'ERR1653135', 'ERR1653136', 'ERR1653137', 'ERR1653138', 'ERR1653139', 'ERR1653140', 'ERR1653141', 'ERR1653142', 'ERR1653143', 'ERR1653144', 'ERR1653145', 'ERR1653146', 'ERR2119683', 'ERR2119686', 'ERR2119687', 'ERR2119688'] ['Ireland', 'United Kingdom', 'France'] ['PRJEB22610', 'PRJEB15432'] ['ERP104300', 'ERP017163'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_S8 MAG_357 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir milk_kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days MAG_358 87.83 0.18 264 1549697 39.72 8045 ['SAMEA104293489', 'SAMEA104293490', 'SAMEA104293491', 'SAMEA104293493', 'SAMEA104293494', 'SAMEA104293495', 'SAMEA104293482', 'SAMEA104293483', 'SAMEA104293484', 'SAMEA104293485', 'SAMEA104293486', 'SAMEA104293487', 'SAMEA104293488', 'SAMEA4443186', 'SAMEA4443187', 'SAMEA4443188', 'SAMEA4443189', 'SAMEA4443190', 'SAMEA4443191', 'SAMEA4443192', 'SAMEA4443193', 'SAMEA4443194', 'SAMEA4443195', 'SAMEA4443196', 'SAMEA4443197', 'SAMEA4443198', 'SAMEA4443199', 'SAMEA4443200', 'SAMEA4443201', 'SAMEA4443202', 'SAMEA4443203', 'SAMEA104293476', 'SAMEA104293479', 'SAMEA104293480', 'SAMEA104293481'] ['ERR2119696', 'ERR2119697', 'ERR2119698', 'ERR2119700', 'ERR2119701', 'ERR2119702', 'ERR2286738', 'ERR2286739', 'ERR2286740', 'ERR2286741', 'ERR2286742', 'ERR2286743', 'ERR2286744', 'ERR1653129', 'ERR1653130', 'ERR1653131', 'ERR1653132', 'ERR1653133', 'ERR1653134', 'ERR1653135', 'ERR1653136', 'ERR1653137', 'ERR1653138', 'ERR1653139', 'ERR1653140', 'ERR1653141', 'ERR1653142', 'ERR1653143', 'ERR1653144', 'ERR1653145', 'ERR1653146', 'ERR2119683', 'ERR2119686', 'ERR2119687', 'ERR2119688'] ['Ireland', 'United Kingdom', 'France'] ['PRJEB22610', 'PRJEB15432'] ['ERP104300', 'ERP017163'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LeechJ_xxxx__AF78__bin.4 MAG_358 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus reuteri kefir milk_kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days MAG_359 65.02 4.65 115 1206935 38.16 15202 ['SAMEA104293489', 'SAMEA104293490', 'SAMEA104293491', 'SAMEA104293493', 'SAMEA104293494', 'SAMEA104293495', 'SAMEA104293482', 'SAMEA104293483', 'SAMEA104293484', 'SAMEA104293485', 'SAMEA104293486', 'SAMEA104293487', 'SAMEA104293488', 'SAMEA4443186', 'SAMEA4443187', 'SAMEA4443188', 'SAMEA4443189', 'SAMEA4443190', 'SAMEA4443191', 'SAMEA4443192', 'SAMEA4443193', 'SAMEA4443194', 'SAMEA4443195', 'SAMEA4443196', 'SAMEA4443197', 'SAMEA4443198', 'SAMEA4443199', 'SAMEA4443200', 'SAMEA4443201', 'SAMEA4443202', 'SAMEA4443203', 'SAMEA104293476', 'SAMEA104293479', 'SAMEA104293480', 'SAMEA104293481'] ['ERR2119696', 'ERR2119697', 'ERR2119698', 'ERR2119700', 'ERR2119701', 'ERR2119702', 'ERR2286738', 'ERR2286739', 'ERR2286740', 'ERR2286741', 'ERR2286742', 'ERR2286743', 'ERR2286744', 'ERR1653129', 'ERR1653130', 'ERR1653131', 'ERR1653132', 'ERR1653133', 'ERR1653134', 'ERR1653135', 'ERR1653136', 'ERR1653137', 'ERR1653138', 'ERR1653139', 'ERR1653140', 'ERR1653141', 'ERR1653142', 'ERR1653143', 'ERR1653144', 'ERR1653145', 'ERR1653146', 'ERR2119683', 'ERR2119686', 'ERR2119687', 'ERR2119688'] ['Ireland', 'United Kingdom', 'France'] ['PRJEB22610', 'PRJEB15432'] ['ERP104300', 'ERP017163'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_S8 MAG_359 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens kefir milk_kefir Animal Dairy milk beverage liquid low lactic mesophilic 1-2 days GCF_001787355.1_ASM178735v1_genomic 99.63 1 6 3093577 57.66 2807246 GCF_001787355.1 GCF_001787355.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001787355.1_ASM178735v1_genomic GCF_001787355.1_ASM178735v1_genomic Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Kozakia Kozakia baliensis millet fermented millet Plant Grain millet starch-based staple semi-solid unknown unknown unknown unknown LeechJ_xxxx__AF81__bin.10 98.49726776 1.183970856 148 1726245 53.23 17367 SAMN39472500 SRR27593160 Burkina Faso PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF66__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum mou mou Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF81__bin.1 85.68539022 0.316011236 86 1350067 44.49 38332 SAMN39472500 SRR27593160 Burkina Faso PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF81__bin.1 LeechJ_xxxx__AF81__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc sp900554745 mou mou Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF81__bin.6 98.91304348 0.543478261 130 1827895 36.01 22656 SAMN39472500 SRR27593160 Burkina Faso PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF81__bin.6 LeechJ_xxxx__AF81__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Periweissella NA mou mou Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF81__bin.2 69.2 0.3 1851 9020255 43.85 5997 SAMN39472500 SRR27593160 Burkina Faso PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF17__bin.1 LeechJ_xxxx__AF81__bin.2 Ascomycota;Saccharomycetes;Saccharomycetales;Metschnikowiaceae;Clavispora Clavispora lusitaniae mou mou Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF81__bin.5 58.7 0.7 2228 7760221 38.97 3830 SAMN39472500 SRR27593160 Burkina Faso PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. EBC_024.4 LeechJ_xxxx__AF81__bin.5 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces marxianus mou mou Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days LeechJ_xxxx__AF81__bin.8 91.6 0.2 884 10127368 38.29 16489 SAMN39472500 SRR27593160 Burkina Faso PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2597__bin.1 MASTER_WP4_CSIC_2__P2597__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia kudriavzevii mou mou Plant Roots_Tubers cassava starch-based staple semi-solid low lactic mesophilic 1-7 days GCF_001434935.1_ASM143493v1_genomic 99.48 0.52 111 2670775 36.86 96515 GCF_001434935.1 GCF_001434935.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001434935.1_ASM143493v1_genomic GCF_001434935.1_ASM143493v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus uvarum wine must_of_bobal_grape_variety Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months GCF_001435395.1_ASM143539v1_genomic 99.48 0.52 220 2220459 37.57 29054 GCF_001435395.1 GCF_001435395.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 LimaC_2020__SRR9640350__bin.18 LimaC_2020__SRR9640350__bin.18 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus vini grape must must_of_grape Plant Fruit grape beverage solid low lactic mesophilic 1 day - 3 months YuY_2022__SRR16950696__bin.17 56.85 0.98 24 1201199 45.01 88397 SAMN23133468 SRR16950696 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. LeechJ_2020__ERS3967691__bin.13 YuY_2022__SRR16950696__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella cibaria mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950696__bin.19 65.62 0.39 87 1419564 41.9 27401 SAMN23133468 SRR16950696 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. GCF_008033155.1_ASM803315v1_genomic GCF_008033155.1_ASM803315v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Secundilactobacillus Secundilactobacillus malefermentans mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950696__bin.2 91.52 2.97 177 2536128 45.03 21661 SAMN23133468 SRR16950696 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. LeechJ_2020__ERS3967740__bin.11 LeechJ_2020__ERS3967740__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Secundilactobacillus Secundilactobacillus silagei mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950696__bin.22 99.06 2.53 388 2429018 34.99 9102 SAMN23133468 SRR16950696 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. MAG_501 YuY_2022__SRR16950696__bin.22 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950696__bin.3 94.16 1.4 236 2451950 43.33 17023 SAMN23133468 SRR16950696 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. LandisEA_2021__SRS5653333__bin.1 YuY_2022__SRR16950696__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950696__bin.5 84.52 4.44 212 1789049 41.51 13659 SAMN23133468 SRR16950696 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 FontanaF_2023__SRR20746871__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950696__bin.8 75.19 3.73 43 2306246 44.64 83932 SAMN23133468 SRR16950696 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. FalardeauJ_2023__SRR20811279__bin.3 YuY_2022__SRR16950697__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950697__bin.1 50.79 1.17 80 1151668 42.64 26404 SAMN23133467 SRR16950697 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. GCF_008033155.1_ASM803315v1_genomic GCF_008033155.1_ASM803315v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Secundilactobacillus Secundilactobacillus malefermentans mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950697__bin.11 56.71 0.45 15 1298823 45.45 99591 SAMN23133467 SRR16950697 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. LeechJ_2020__ERS3967691__bin.13 YuY_2022__SRR16950697__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella cibaria mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950697__bin.12 57.53 1.38 166 1948278 46.36 19179 SAMN23133467 SRR16950697 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. YasirM_2022__SRR18335011__bin.1 YuY_2022__SRR16950697__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus pentosus mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950697__bin.15 85.53 4.18 213 1797587 41.42 11794 SAMN23133467 SRR16950697 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 FontanaF_2023__SRR20746871__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950697__bin.3 100 2.43 49 3169330 44.76 129758 SAMN23133467 SRR16950697 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. FalardeauJ_2023__SRR20811279__bin.3 YuY_2022__SRR16950697__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950697__bin.5 88.21 1.31 221 2309772 43.4 15071 SAMN23133467 SRR16950697 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. LandisEA_2021__SRS5653333__bin.1 YuY_2022__SRR16950696__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950698__bin.1 84.89 2 171 2235377 45.38 19789 SAMN23133466 SRR16950698 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. LeechJ_2020__ERS3967740__bin.11 LeechJ_2020__ERS3967740__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Secundilactobacillus Secundilactobacillus silagei mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950698__bin.18 53.13 1.12 11 1208110 45.71 219877 SAMN23133466 SRR16950698 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. MotaGutierrezJ_2021__SRR11602150__bin.9 LeechJ_xxxx__AF54__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950698__bin.2 100 3.33 58 3088425 44.92 84851 SAMN23133466 SRR16950698 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. FalardeauJ_2023__SRR20811279__bin.3 YuY_2022__SRR16950697__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950698__bin.20 84.05 1.2 203 2204302 43.27 17104 SAMN23133466 SRR16950698 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. LandisEA_2021__SRS5653333__bin.1 YuY_2022__SRR16950696__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950698__bin.4 60.68 1.68 85 1429883 42.05 28694 SAMN23133466 SRR16950698 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. GCF_008033155.1_ASM803315v1_genomic GCF_008033155.1_ASM803315v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Secundilactobacillus Secundilactobacillus malefermentans mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950699__bin.12 54.41 0.82 514 2116011 37.57 4626 SAMN23133465 SRR16950699 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. YuY_2022__SRR16950700__bin.25 YuY_2022__SRR16950699__bin.12 Bacillota;Bacilli;Bacillales;Bacillaceae_H;Priestia Priestia flexa mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950699__bin.21 63.28 0.19 23 1542517 34.61 114787 SAMN23133465 SRR16950699 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. MAG_501 YuY_2022__SRR16950696__bin.22 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950699__bin.23 82.41 0.12 153 1688723 39.92 15953 SAMN23133465 SRR16950699 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. YuY_2022__SRR16950700__bin.19 YuY_2022__SRR16950700__bin.19 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Aerococcus Aerococcus urinaeequi mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950699__bin.25 69.68 1.56 152 1370256 45.33 12764 SAMN23133465 SRR16950699 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. GCF_004771075.1_ASM477107v1_genomic YuY_2022__SRR16950700__bin.21 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella confusa mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950699__bin.4 55.89 1.93 255 1901258 38.56 9455 SAMN23133465 SRR16950699 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. YuY_2022__SRR16950700__bin.23 YuY_2022__SRR16950699__bin.4 Bacillota;Bacilli;Bacillales;Bacillaceae_H;Priestia Priestia megaterium mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950700__bin.19 83.79 0 112 1680584 39.87 22684 SAMN23133464 SRR16950700 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. YuY_2022__SRR16950700__bin.19 YuY_2022__SRR16950700__bin.19 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Aerococcus Aerococcus urinaeequi mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950700__bin.20 91.96 4.76 325 3377684 41.58 14172 SAMN23133464 SRR16950700 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. YuY_2022__SRR16950702__bin.15 YuY_2022__SRR16950700__bin.20 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus altitudinis mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950700__bin.21 68.31 0.55 148 1254659 45.1 10531 SAMN23133464 SRR16950700 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. GCF_004771075.1_ASM477107v1_genomic YuY_2022__SRR16950700__bin.21 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella confusa mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950700__bin.23 94.14 3.41 270 1980281 38.5 9723 SAMN23133464 SRR16950700 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. YuY_2022__SRR16950700__bin.23 YuY_2022__SRR16950700__bin.23 Bacillota;Bacilli;Bacillales;Bacillaceae_H;Priestia Priestia megaterium mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950700__bin.25 55.9 0.09 505 2116983 37.91 4698 SAMN23133464 SRR16950700 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. YuY_2022__SRR16950700__bin.25 YuY_2022__SRR16950700__bin.25 Bacillota;Bacilli;Bacillales;Bacillaceae_H;Priestia Priestia flexa mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950700__bin.3 51.55 1.37 84 1513071 45.42 27086 SAMN23133464 SRR16950700 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950700__bin.5 87.13 0.01 25 3622219 43.89 239982 SAMN23133464 SRR16950700 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. MotaGutierrezJ_2021__SRR11602153__bin.4 YuY_2022__SRR16950700__bin.5 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus subtilis mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950701__bin.10 81.35 0.2 114 1663973 39.83 22194 SAMN23133463 SRR16950701 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. YuY_2022__SRR16950700__bin.19 YuY_2022__SRR16950700__bin.19 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Aerococcus Aerococcus urinaeequi mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950701__bin.24 53.04 1.18 74 1135486 45.01 28526 SAMN23133463 SRR16950701 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. LeechJ_2020__ERS3967691__bin.13 YuY_2022__SRR16950696__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella cibaria mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950701__bin.28 64.84 1.01 151 1235484 45.26 11063 SAMN23133463 SRR16950701 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. GCF_004771075.1_ASM477107v1_genomic YuY_2022__SRR16950700__bin.21 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella confusa mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950701__bin.3 54.02 0.63 418 1999123 38.11 5494 SAMN23133463 SRR16950701 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. YuY_2022__SRR16950700__bin.25 YuY_2022__SRR16950700__bin.25 Bacillota;Bacilli;Bacillales;Bacillaceae_H;Priestia Priestia flexa mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950701__bin.9 65.63 1.81 333 2349882 38.51 8949 SAMN23133463 SRR16950701 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. YuY_2022__SRR16950700__bin.23 YuY_2022__SRR16950701__bin.9 Bacillota;Bacilli;Bacillales;Bacillaceae_H;Priestia Priestia megaterium mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950702__bin.15 71.05 0.49 264 2547326 41.61 13162 SAMN23133462 SRR16950702 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. YuY_2022__SRR16950702__bin.15 YuY_2022__SRR16950702__bin.15 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus altitudinis mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950702__bin.24 53.22 0.04 11 2020712 44.24 488141 SAMN23133462 SRR16950702 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. MotaGutierrezJ_2021__SRR11602153__bin.4 YuY_2022__SRR16950700__bin.5 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus subtilis mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950702__bin.26 55.74 1.68 323 2315876 38.53 9331 SAMN23133462 SRR16950702 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. YuY_2022__SRR16950700__bin.23 YuY_2022__SRR16950702__bin.26 Bacillota;Bacilli;Bacillales;Bacillaceae_H;Priestia Priestia megaterium mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950702__bin.27 52.98 0.07 98 2042842 38.21 38834 SAMN23133462 SRR16950702 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. YuY_2022__SRR16950700__bin.25 YuY_2022__SRR16950700__bin.25 Bacillota;Bacilli;Bacillales;Bacillaceae_H;Priestia Priestia flexa mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950702__bin.30 80.74 1.2 176 1515938 38.98 11499 SAMN23133462 SRR16950702 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. FontanaF_2023__SRR20746838__bin.11 YuY_2022__SRR16950704__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus garvieae mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950703__bin.21 83.99 0.18 145 1632406 38.94 17822 SAMN23133461 SRR16950703 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. FontanaF_2023__SRR20746838__bin.11 YuY_2022__SRR16950704__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus garvieae mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950703__bin.3 59.74 3.56 298 2091459 38.5 8705 SAMN23133461 SRR16950703 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. YuY_2022__SRR16950700__bin.23 YuY_2022__SRR16950703__bin.3 Bacillota;Bacilli;Bacillales;Bacillaceae_H;Priestia Priestia megaterium mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950704__bin.11 87.79 0.51 125 1792057 38.75 21797 SAMN23133460 SRR16950704 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. FontanaF_2023__SRR20746838__bin.11 YuY_2022__SRR16950704__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus garvieae mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950704__bin.19 74.7 0.12 12 2876084 44.23 506089 SAMN23133460 SRR16950704 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. MotaGutierrezJ_2021__SRR11602153__bin.4 YuY_2022__SRR16950700__bin.5 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus subtilis mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months YuY_2022__SRR16950704__bin.23 60.55 1.51 301 2210776 38.47 9807 SAMN23133460 SRR16950704 China PRJNA780248 SRP346193 NCBI Yu Y, Li L, Xu Y, Li H, Yu Y, Xu Z. Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation. Front Microbiol. 2022 Apr 29;13:824644. doi: 10.3389/fmicb.2022.824644. YuY_2022__SRR16950700__bin.23 YuY_2022__SRR16950704__bin.23 Bacillota;Bacilli;Bacillales;Bacillaceae_H;Priestia Priestia megaterium mustard leaf mustard_leaf Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003999355.1_ASM399935v1_genomic 99.03 0.97 2 1601193 38.27 1400795 GCF_003999355.1 GCF_003999355.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 LeechJ_xxxx__AF41__bin.4 LeechJ_xxxx__AF41__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus amylolyticus tofu whey naturally_fermented_tofu_whey Plant Legumes soybean soybean liquid liquid unknown unknown unknown unknown Nixt_bin.1 99.08 0.7 170 2339916 31.93 27867 SAMN33725226 SRR23816542 Denmark PRJNA943417 SRP426743 NCBI Kothe CI, Carøe C, Mazel F, Zilber D, Cruz-Morales P, Mohellibi N, Evans JD. Novel misos shape distinct microbial ecologies: opportunities for flavourful sustainable food innovation. Food Res Int. 2024 Aug;189:114490. doi: 10.1016/j.foodres.2024.114490. AlvarezOrdonezA_xxxx__Q06-25__bin.5 Nixt_bin.1 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus epidermidis miso yellow pea nixtamalized_yellow_pea_miso Plant Legumes yellow pea other bean paste semi-solid none lactic mesophilic 1-3 months Nixt_bin.2 99.34 0 75 2606991 48.05 56867 SAMN33725226 SRR23816542 Denmark PRJNA943417 SRP426743 NCBI Kothe CI, Carøe C, Mazel F, Zilber D, Cruz-Morales P, Mohellibi N, Evans JD. Novel misos shape distinct microbial ecologies: opportunities for flavourful sustainable food innovation. Food Res Int. 2024 Aug;189:114490. doi: 10.1016/j.foodres.2024.114490. Nixt_bin.2 Nixt_bin.2 Bacillota;Bacilli;Exiguobacteriales;Exiguobacteriaceae;Exiguobacterium Exiguobacterium sp902362975 miso yellow pea nixtamalized_yellow_pea_miso Plant Legumes yellow pea other bean paste semi-solid none lactic mesophilic 1-3 months GCF_001434135.1_ASM143413v1_genomic 99.25 0.21 93 2997015 41.74 83891 GCF_001434135.1 GCF_001434135.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001434135.1_ASM143413v1_genomic GCF_001434135.1_ASM143413v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus kisonensis sunki nonsalted_pickle_solution_used_in_production_of_sunki Plant Roots_Tubers turnip pickled vegetables liquid none lactic mesophilic 1-4 weeks GCF_001434145.1_ASM143414v1_genomic 99.06 0 16 2344693 42.39 313629 GCF_001434145.1 GCF_001434145.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001434145.1_ASM143414v1_genomic GCF_001434145.1_ASM143414v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus otakiensis sunki nonsalted_pickle_solution_used_in_production_of_sunki Plant Roots_Tubers turnip pickled vegetables liquid none lactic mesophilic 1-4 weeks LeechJ_xxxx__AF22__bin.5 94.92583919 0.546448087 107 1546169 53.14 22896 SAMN39472441 SRR27593228 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF22__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum nono nono Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days LeechJ_xxxx__AF22__bin.3 79.74295982 0.754483612 315 1485144 36.69 6042 SAMN39472441 SRR27593228 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 LeechJ_xxxx__AF22__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus nono nono Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days LeechJ_xxxx__AF22__bin.1 85.93565525 0.789551358 244 1236979 51.48 6225 SAMN39472441 SRR27593228 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic LeechJ_xxxx__AF22__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii nono nono Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days LeechJ_xxxx__AF34__bin.2 98.48484848 1.704545455 201 2453409 34.88 23955 SAMN39472453 SRR27593215 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 LeechJ_xxxx__AF34__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis nono nono Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days LeechJ_xxxx__AF34__bin.1 94.14592516 2.34082397 218 1621572 37.55 9912 SAMN39472453 SRR27593215 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 LeechJ_xxxx__AF34__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius nono nono Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days LeechJ_xxxx__AF34__bin.8 71.55172414 0 939 3645259 58.49 4416 SAMN39472453 SRR27593215 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_19 LeechJ_xxxx__AF34__bin.8 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella pneumoniae nono nono Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days LeechJ_xxxx__AF34__bin.5 85.99192759 2.490660025 592 2628032 39.85 5205 SAMN39472453 SRR27593215 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_312 LeechJ_xxxx__AF34__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter baumannii nono nono Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days LeechJ_xxxx__AF93__bin.1 96.52734456 0.887918486 113 1724251 38.79 23469 SAMN39472510 SRR27593181 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 LeechJ_xxxx__AF93__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus nono nono Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days LeechJ_xxxx__AF93__bin.2 81.00743299 1.890236956 269 1099500 51.36 4824 SAMN39472510 SRR27593181 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic LeechJ_xxxx__AF93__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii nono nono Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days L1.2_bin.2 99.17 0.46 58 2644412 31.46 81289 SAMN36368175 SRR25203535 Denmark PRJNA992639 SRP448103 NCBI Kothe CI, Carøe C, Mazel F, Zilber D, Cruz-Morales P, Mohellibi N, Evans JD. Novel misos shape distinct microbial ecologies: opportunities for flavourful sustainable food innovation. Food Res Int. 2024 Aug;189:114490. doi: 10.1016/j.foodres.2024.114490. L1.2_bin.2 L1.2_bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus pasteuri miso novel_miso Plant Legumes soybean soybean paste semi-solid low lactic mesophilic 1-3 months MS_bin.1 99.44 0.13 35 3745635 46.11 177297 SAMN36368194 SRR25203514 Denmark PRJNA992639 SRP448103 NCBI Kothe CI, Carøe C, Mazel F, Zilber D, Cruz-Morales P, Mohellibi N, Evans JD. Novel misos shape distinct microbial ecologies: opportunities for flavourful sustainable food innovation. Food Res Int. 2024 Aug;189:114490. doi: 10.1016/j.foodres.2024.114490. MS_bin.1 MS_bin.1 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus amyloliquefaciens miso novel_miso Plant Legumes soybean soybean paste semi-solid low lactic mesophilic 1-3 months NP2.2_bin.7 97.24 1.24 41 2530209 36.01 121188 SAMN36368185 SRR25203524 Denmark PRJNA992639 SRP448103 NCBI Kothe CI, Carøe C, Mazel F, Zilber D, Cruz-Morales P, Mohellibi N, Evans JD. Novel misos shape distinct microbial ecologies: opportunities for flavourful sustainable food innovation. Food Res Int. 2024 Aug;189:114490. doi: 10.1016/j.foodres.2024.114490. LeechJ_xxxx__AF24__bin.1 NP2.2_bin.7 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus simulans miso novel_miso Plant Legumes soybean soybean paste semi-solid low lactic mesophilic 1-3 months NP3.2_bin.5 97.53 0.93 184 2903931 44.86 25387 SAMN36368186 SRR25203523 Denmark PRJNA992639 SRP448103 NCBI Kothe CI, Carøe C, Mazel F, Zilber D, Cruz-Morales P, Mohellibi N, Evans JD. Novel misos shape distinct microbial ecologies: opportunities for flavourful sustainable food innovation. Food Res Int. 2024 Aug;189:114490. doi: 10.1016/j.foodres.2024.114490. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum miso novel_miso Plant Legumes soybean soybean paste semi-solid low lactic mesophilic 1-3 months P.1_bin.1 98.9 0.71 143 4513294 56.68 85157 SAMN36368165 SRR25203509 Denmark PRJNA992639 SRP448103 NCBI Kothe CI, Carøe C, Mazel F, Zilber D, Cruz-Morales P, Mohellibi N, Evans JD. Novel misos shape distinct microbial ecologies: opportunities for flavourful sustainable food innovation. Food Res Int. 2024 Aug;189:114490. doi: 10.1016/j.foodres.2024.114490. P.1_bin.1 P.1_bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Cronobacter Cronobacter malonaticus miso novel_miso Plant Legumes soybean soybean paste semi-solid low lactic mesophilic 1-3 months PB_bin.2 99.73 1.31 90 2647723 32.34 78464 SAMN36368195 SRR25203513 Denmark PRJNA992639 SRP448103 NCBI Kothe CI, Carøe C, Mazel F, Zilber D, Cruz-Morales P, Mohellibi N, Evans JD. Novel misos shape distinct microbial ecologies: opportunities for flavourful sustainable food innovation. Food Res Int. 2024 Aug;189:114490. doi: 10.1016/j.foodres.2024.114490. PB_bin.2 PB_bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus warneri miso novel_miso Plant Legumes soybean soybean paste semi-solid low lactic mesophilic 1-3 months S3.2_bin.2 99.34 0 84 2420163 35.66 52406 SAMN36368192 SRR25203516 Denmark PRJNA992639 SRP448103 NCBI Kothe CI, Carøe C, Mazel F, Zilber D, Cruz-Morales P, Mohellibi N, Evans JD. Novel misos shape distinct microbial ecologies: opportunities for flavourful sustainable food innovation. Food Res Int. 2024 Aug;189:114490. doi: 10.1016/j.foodres.2024.114490. S3.2_bin.2 S3.2_bin.2 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus B miso novel_miso Plant Legumes soybean soybean paste semi-solid low lactic mesophilic 1-3 months WalshAM_2017__ERR1981166__bin.3 100 0 79 1778733 39.11 57189 SAMEA104075947 ERR1981166 Italy PRJEB20873 ERP023064 NCBI Walsh AM, Crispie F, Daari K, O'Sullivan O, Martin JC, Arthur CT, Claesson MJ, Scott KP, Cotter PD. Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks. Appl Environ Microbiol. 2017 Aug 1;83(16):e01144-17. doi: 10.1128/AEM.01144-17. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_49 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days WalshAM_2017__ERR1981167__bin.1 99 1.16 102 1879808 39.49 44577 SAMEA104075946 ERR1981167 Italy PRJEB20873 ERP023064 NCBI Walsh AM, Crispie F, Daari K, O'Sullivan O, Martin JC, Arthur CT, Claesson MJ, Scott KP, Cotter PD. Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks. Appl Environ Microbiol. 2017 Aug 1;83(16):e01144-17. doi: 10.1128/AEM.01144-17. CM_UNINA_FFOOD__FFOOD_270__bin.3 WalshAM_2017__ERR1981167__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus suis AA nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days WalshAM_2017__ERR1981169__bin.1 97.81 0.59 228 4677306 58.3 35509 SAMEA104075944 ERR1981169 Italy PRJEB20873 ERP023064 NCBI Walsh AM, Crispie F, Daari K, O'Sullivan O, Martin JC, Arthur CT, Claesson MJ, Scott KP, Cotter PD. Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks. Appl Environ Microbiol. 2017 Aug 1;83(16):e01144-17. doi: 10.1128/AEM.01144-17. MAG_19 MAG_19 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella pneumoniae nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days WalshAM_2017__ERR1981172__bin.2 98.88 0 34 1776511 37.61 96235 SAMEA104075941 ERR1981172 Italy PRJEB20873 ERP023064 NCBI Walsh AM, Crispie F, Daari K, O'Sullivan O, Martin JC, Arthur CT, Claesson MJ, Scott KP, Cotter PD. Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks. Appl Environ Microbiol. 2017 Aug 1;83(16):e01144-17. doi: 10.1128/AEM.01144-17. WalshAM_2017__ERS1739834__bin.1 WalshAM_2017__ERS1739834__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days WalshAM_2017__ERR1981175__bin.3 93.79 0.7 275 1654212 36.99 7929 SAMEA104075938 ERR1981175 Italy PRJEB20873 ERP023064 NCBI Walsh AM, Crispie F, Daari K, O'Sullivan O, Martin JC, Arthur CT, Claesson MJ, Scott KP, Cotter PD. Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks. Appl Environ Microbiol. 2017 Aug 1;83(16):e01144-17. doi: 10.1128/AEM.01144-17. WalshAM_2017__ERR1981175__bin.3 WalshAM_2017__ERR1981175__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus NA nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days MAG_5 83.33 1.99 998 3622318 57.83 4027 ['SAMEA104075947', 'SAMEA104075946', 'SAMEA104075945', 'SAMEA104075944', 'SAMEA104075943', 'SAMEA104075942', 'SAMEA104075941', 'SAMEA104075940', 'SAMEA104075939', 'SAMEA104075938'] ['ERR1981166', 'ERR1981167', 'ERR1981168', 'ERR1981169', 'ERR1981170', 'ERR1981171', 'ERR1981172', 'ERR1981173', 'ERR1981174', 'ERR1981175', 'ERR2014805', 'ERR2014806', 'ERR2014807', 'ERR2014808', 'ERR2014809', 'ERR2014810', 'ERR2014811', 'ERR2014812', 'ERR2014813', 'ERR2014814'] Ghana PRJEB20873 ERP023064 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_19 MAG_5 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella pneumoniae nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days MAG_6 71.87 2.06 629 3778646 57.99 7442 ['SAMEA104075947', 'SAMEA104075946', 'SAMEA104075945', 'SAMEA104075944', 'SAMEA104075943', 'SAMEA104075942', 'SAMEA104075941', 'SAMEA104075940', 'SAMEA104075939', 'SAMEA104075938'] ['ERR1981166', 'ERR1981167', 'ERR1981168', 'ERR1981169', 'ERR1981170', 'ERR1981171', 'ERR1981172', 'ERR1981173', 'ERR1981174', 'ERR1981175', 'ERR2014805', 'ERR2014806', 'ERR2014807', 'ERR2014808', 'ERR2014809', 'ERR2014810', 'ERR2014811', 'ERR2014812', 'ERR2014813', 'ERR2014814'] Ghana PRJEB20873 ERP023064 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_6 MAG_6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella quasipneumoniae nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days MAG_10 51.72 1.72 1406 4815789 50.89 3869 ['SAMEA104075947', 'SAMEA104075946', 'SAMEA104075945', 'SAMEA104075944', 'SAMEA104075943', 'SAMEA104075942', 'SAMEA104075941', 'SAMEA104075940', 'SAMEA104075939', 'SAMEA104075938'] ['ERR1981166', 'ERR1981167', 'ERR1981168', 'ERR1981169', 'ERR1981170', 'ERR1981171', 'ERR1981172', 'ERR1981173', 'ERR1981174', 'ERR1981175', 'ERR2014805', 'ERR2014806', 'ERR2014807', 'ERR2014808', 'ERR2014809', 'ERR2014810', 'ERR2014811', 'ERR2014812', 'ERR2014813', 'ERR2014814'] Ghana PRJEB20873 ERP023064 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. LeechJ_2020__ERS3967688__bin.2 MAG_10 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days MAG_19 98.94 0.47 86 5243648 57.65 112383 ['SAMEA104075947', 'SAMEA104075946', 'SAMEA104075945', 'SAMEA104075944', 'SAMEA104075943', 'SAMEA104075942', 'SAMEA104075941', 'SAMEA104075940', 'SAMEA104075939', 'SAMEA104075938'] ['ERR1981166', 'ERR1981167', 'ERR1981168', 'ERR1981169', 'ERR1981170', 'ERR1981171', 'ERR1981172', 'ERR1981173', 'ERR1981174', 'ERR1981175', 'ERR2014805', 'ERR2014806', 'ERR2014807', 'ERR2014808', 'ERR2014809', 'ERR2014810', 'ERR2014811', 'ERR2014812', 'ERR2014813', 'ERR2014814'] Ghana PRJEB20873 ERP023064 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_19 MAG_19 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella pneumoniae nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days MAG_27 99.62 0 70 2661231 38.18 74983 ['SAMEA104075947', 'SAMEA104075946', 'SAMEA104075945', 'SAMEA104075944', 'SAMEA104075943', 'SAMEA104075942', 'SAMEA104075941', 'SAMEA104075940', 'SAMEA104075939', 'SAMEA104075938'] ['ERR1981166', 'ERR1981167', 'ERR1981168', 'ERR1981169', 'ERR1981170', 'ERR1981171', 'ERR1981172', 'ERR1981173', 'ERR1981174', 'ERR1981175', 'ERR2014805', 'ERR2014806', 'ERR2014807', 'ERR2014808', 'ERR2014809', 'ERR2014810', 'ERR2014811', 'ERR2014812', 'ERR2014813', 'ERR2014814'] Ghana PRJEB20873 ERP023064 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0139-001_Enterococcus_lactis_CICC_24101 MAG_27 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B lactis nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days MAG_41 77.39 1.42 386 1434271 52.41 4219 ['SAMEA104075947', 'SAMEA104075946', 'SAMEA104075945', 'SAMEA104075944', 'SAMEA104075943', 'SAMEA104075942', 'SAMEA104075941', 'SAMEA104075940', 'SAMEA104075939', 'SAMEA104075938'] ['ERR1981166', 'ERR1981167', 'ERR1981168', 'ERR1981169', 'ERR1981170', 'ERR1981171', 'ERR1981172', 'ERR1981173', 'ERR1981174', 'ERR1981175', 'ERR2014805', 'ERR2014806', 'ERR2014807', 'ERR2014808', 'ERR2014809', 'ERR2014810', 'ERR2014811', 'ERR2014812', 'ERR2014813', 'ERR2014814'] Ghana PRJEB20873 ERP023064 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746839__bin.4 MAG_41 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days MAG_49 100 0 38 1737223 39.26 72056 ['SAMEA104075947', 'SAMEA104075946', 'SAMEA104075945', 'SAMEA104075944', 'SAMEA104075943', 'SAMEA104075942', 'SAMEA104075941', 'SAMEA104075940', 'SAMEA104075939', 'SAMEA104075938'] ['ERR1981166', 'ERR1981167', 'ERR1981168', 'ERR1981169', 'ERR1981170', 'ERR1981171', 'ERR1981172', 'ERR1981173', 'ERR1981174', 'ERR1981175', 'ERR2014805', 'ERR2014806', 'ERR2014807', 'ERR2014808', 'ERR2014809', 'ERR2014810', 'ERR2014811', 'ERR2014812', 'ERR2014813', 'ERR2014814'] Ghana PRJEB20873 ERP023064 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_49 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days MAG_94 88.49 1.95 553 2920659 39.54 6455 ['SAMEA104075947', 'SAMEA104075946', 'SAMEA104075945', 'SAMEA104075944', 'SAMEA104075943', 'SAMEA104075942', 'SAMEA104075941', 'SAMEA104075940', 'SAMEA104075939', 'SAMEA104075938'] ['ERR1981166', 'ERR1981167', 'ERR1981168', 'ERR1981169', 'ERR1981170', 'ERR1981171', 'ERR1981172', 'ERR1981173', 'ERR1981174', 'ERR1981175', 'ERR2014805', 'ERR2014806', 'ERR2014807', 'ERR2014808', 'ERR2014809', 'ERR2014810', 'ERR2014811', 'ERR2014812', 'ERR2014813', 'ERR2014814'] Ghana PRJEB20873 ERP023064 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_312 MAG_94 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter baumannii nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days MAG_96 84.3 1.97 1007 3704351 57.61 4227 ['SAMEA104075947', 'SAMEA104075946', 'SAMEA104075945', 'SAMEA104075944', 'SAMEA104075943', 'SAMEA104075942', 'SAMEA104075941', 'SAMEA104075940', 'SAMEA104075939', 'SAMEA104075938'] ['ERR1981166', 'ERR1981167', 'ERR1981168', 'ERR1981169', 'ERR1981170', 'ERR1981171', 'ERR1981172', 'ERR1981173', 'ERR1981174', 'ERR1981175', 'ERR2014805', 'ERR2014806', 'ERR2014807', 'ERR2014808', 'ERR2014809', 'ERR2014810', 'ERR2014811', 'ERR2014812', 'ERR2014813', 'ERR2014814'] Ghana PRJEB20873 ERP023064 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_19 MAG_96 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella pneumoniae nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days MAG_107 67.86 8.62 565 1274426 36.83 2196 ['SAMEA104075947', 'SAMEA104075946', 'SAMEA104075945', 'SAMEA104075944', 'SAMEA104075943', 'SAMEA104075942', 'SAMEA104075941', 'SAMEA104075940', 'SAMEA104075939', 'SAMEA104075938'] ['ERR1981166', 'ERR1981167', 'ERR1981168', 'ERR1981169', 'ERR1981170', 'ERR1981171', 'ERR1981172', 'ERR1981173', 'ERR1981174', 'ERR1981175', 'ERR2014805', 'ERR2014806', 'ERR2014807', 'ERR2014808', 'ERR2014809', 'ERR2014810', 'ERR2014811', 'ERR2014812', 'ERR2014813', 'ERR2014814'] Ghana PRJEB20873 ERP023064 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_107 MAG_107 Bacillota;Bacilli;Bacillales;Bacillaceae_G;Bacillus_A Bacillus A cereus nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days MAG_115 83.85 2.65 397 1451572 53.14 4282 ['SAMEA104075947', 'SAMEA104075946', 'SAMEA104075945', 'SAMEA104075944', 'SAMEA104075943', 'SAMEA104075942', 'SAMEA104075941', 'SAMEA104075940', 'SAMEA104075939', 'SAMEA104075938'] ['ERR1981166', 'ERR1981167', 'ERR1981168', 'ERR1981169', 'ERR1981170', 'ERR1981171', 'ERR1981172', 'ERR1981173', 'ERR1981174', 'ERR1981175', 'ERR2014805', 'ERR2014806', 'ERR2014807', 'ERR2014808', 'ERR2014809', 'ERR2014810', 'ERR2014811', 'ERR2014812', 'ERR2014813', 'ERR2014814'] Ghana PRJEB20873 ERP023064 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746839__bin.4 MAG_115 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days MAG_142 85.27 5.1 386 1642815 45.05 4854 ['SAMEA104075947', 'SAMEA104075946', 'SAMEA104075945', 'SAMEA104075944', 'SAMEA104075943', 'SAMEA104075942', 'SAMEA104075941', 'SAMEA104075940', 'SAMEA104075939', 'SAMEA104075938'] ['ERR1981166', 'ERR1981167', 'ERR1981168', 'ERR1981169', 'ERR1981170', 'ERR1981171', 'ERR1981172', 'ERR1981173', 'ERR1981174', 'ERR1981175', 'ERR2014805', 'ERR2014806', 'ERR2014807', 'ERR2014808', 'ERR2014809', 'ERR2014810', 'ERR2014811', 'ERR2014812', 'ERR2014813', 'ERR2014814'] Ghana PRJEB20873 ERP023064 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_004771075.1_ASM477107v1_genomic MAG_142 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella confusa nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days MAG_165 93.74 1.1 273 1828519 37.43 10555 ['SAMEA104075947', 'SAMEA104075946', 'SAMEA104075945', 'SAMEA104075944', 'SAMEA104075943', 'SAMEA104075942', 'SAMEA104075941', 'SAMEA104075940', 'SAMEA104075939', 'SAMEA104075938'] ['ERR1981166', 'ERR1981167', 'ERR1981168', 'ERR1981169', 'ERR1981170', 'ERR1981171', 'ERR1981172', 'ERR1981173', 'ERR1981174', 'ERR1981175', 'ERR2014805', 'ERR2014806', 'ERR2014807', 'ERR2014808', 'ERR2014809', 'ERR2014810', 'ERR2014811', 'ERR2014812', 'ERR2014813', 'ERR2014814'] Ghana PRJEB20873 ERP023064 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. YouL_2022__SRR13308520__bin.4 MAG_165 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days MAG_301 59.56 2.7 606 1526171 71.27 2509 ['SAMEA104075947', 'SAMEA104075946', 'SAMEA104075945', 'SAMEA104075944', 'SAMEA104075943', 'SAMEA104075942', 'SAMEA104075941', 'SAMEA104075940', 'SAMEA104075939', 'SAMEA104075938'] ['ERR1981166', 'ERR1981167', 'ERR1981168', 'ERR1981169', 'ERR1981170', 'ERR1981171', 'ERR1981172', 'ERR1981173', 'ERR1981174', 'ERR1981175', 'ERR2014805', 'ERR2014806', 'ERR2014807', 'ERR2014808', 'ERR2014809', 'ERR2014810', 'ERR2014811', 'ERR2014812', 'ERR2014813', 'ERR2014814'] Ghana PRJEB20873 ERP023064 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. CM_UNINA_FFOOD__FFOOD_286__bin.4 MAG_301 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia kristinae nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days MAG_302 60.97 0.98 673 2051373 43.11 3223 ['SAMEA104075947', 'SAMEA104075946', 'SAMEA104075945', 'SAMEA104075944', 'SAMEA104075943', 'SAMEA104075942', 'SAMEA104075941', 'SAMEA104075940', 'SAMEA104075939', 'SAMEA104075938'] ['ERR1981166', 'ERR1981167', 'ERR1981168', 'ERR1981169', 'ERR1981170', 'ERR1981171', 'ERR1981172', 'ERR1981173', 'ERR1981174', 'ERR1981175', 'ERR2014805', 'ERR2014806', 'ERR2014807', 'ERR2014808', 'ERR2014809', 'ERR2014810', 'ERR2014811', 'ERR2014812', 'ERR2014813', 'ERR2014814'] Ghana PRJEB20873 ERP023064 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_004771075.1_ASM477107v1_genomic MAG_302 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella confusa nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days MAG_303 97.55 5.71 325 2174456 37.66 13258 ['SAMEA104075947', 'SAMEA104075946', 'SAMEA104075945', 'SAMEA104075944', 'SAMEA104075943', 'SAMEA104075942', 'SAMEA104075941', 'SAMEA104075940', 'SAMEA104075939', 'SAMEA104075938'] ['ERR1981166', 'ERR1981167', 'ERR1981168', 'ERR1981169', 'ERR1981170', 'ERR1981171', 'ERR1981172', 'ERR1981173', 'ERR1981174', 'ERR1981175', 'ERR2014805', 'ERR2014806', 'ERR2014807', 'ERR2014808', 'ERR2014809', 'ERR2014810', 'ERR2014811', 'ERR2014812', 'ERR2014813', 'ERR2014814'] Ghana PRJEB20873 ERP023064 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. WalshAM_2017__ERR1981175__bin.3 WalshAM_2017__ERR1981175__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus NA nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days LeechJ_xxxx__AF64__bin.4 95.39148706 1.800233992 222 1673414 38.77 11701 SAMN39472483 SRR27593179 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 LeechJ_xxxx__AF64__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days LeechJ_xxxx__AF64__bin.3 95.6284153 2.158469945 218 1452385 53.57 9187 SAMN39472483 SRR27593179 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF22__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days LeechJ_xxxx__AF64__bin.1 70.09976979 1.080283353 331 1192004 37.25 4113 SAMN39472483 SRR27593179 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 LeechJ_xxxx__AF64__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days LeechJ_xxxx__AF64__bin.5 57.21003135 0.862068966 251 725370 51.7 3113 SAMN39472483 SRR27593179 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic LeechJ_xxxx__AF64__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days LeechJ_xxxx__AF64__bin.6 83.05419722 1.555676856 217 1554804 39.55 9585 SAMN39472483 SRR27593179 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. C-03.Ssa-BR LeechJ_xxxx__AF64__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus sp003521145 nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days LeechJ_xxxx__AF64__bin.2 54.6 0.7 2483 7144529 38.69 3059 SAMN39472483 SRR27593179 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 LeechJ_xxxx__AF64__bin.2 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days WalshAM_2017__ERS1739831__bin.3 94.06991261 0.967540574 191 1640874 37.67 13594 ERS1739831 ERR2014814 Ghana PRJEB20873 ERP023064 NCBI Walsh AM, Crispie F, Daari K, O'Sullivan O, Martin JC, Arthur CT, Claesson MJ, Scott KP, Cotter PD. Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks. Appl Environ Microbiol. 2017 Aug 1;83(16):e01144-17. doi: 10.1128/AEM.01144-17. WalshAM_2017__ERS1739834__bin.1 WalshAM_2017__ERS1739834__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days WalshAM_2017__ERS1739831__bin.1 84.06110424 1.512188209 600 4047770 58.24 8633 ERS1739831 ERR2014814 Ghana PRJEB20873 ERP023064 NCBI Walsh AM, Crispie F, Daari K, O'Sullivan O, Martin JC, Arthur CT, Claesson MJ, Scott KP, Cotter PD. Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks. Appl Environ Microbiol. 2017 Aug 1;83(16):e01144-17. doi: 10.1128/AEM.01144-17. MAG_19 WalshAM_2017__ERS1739831__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella pneumoniae nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days WalshAM_2017__ERS1739831__bin.4 77.82844362 1.974901689 272 1387898 36.95 6295 ERS1739831 ERR2014814 Ghana PRJEB20873 ERP023064 NCBI Walsh AM, Crispie F, Daari K, O'Sullivan O, Martin JC, Arthur CT, Claesson MJ, Scott KP, Cotter PD. Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks. Appl Environ Microbiol. 2017 Aug 1;83(16):e01144-17. doi: 10.1128/AEM.01144-17. WalshAM_2017__ERR1981175__bin.3 WalshAM_2017__ERR1981175__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus NA nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days WalshAM_2017__ERS1739832__bin.2 93.60799001 0.49937578 241 1625964 37.53 9410 ERS1739832 ERR2014813 Ghana PRJEB20873 ERP023064 NCBI Walsh AM, Crispie F, Daari K, O'Sullivan O, Martin JC, Arthur CT, Claesson MJ, Scott KP, Cotter PD. Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks. Appl Environ Microbiol. 2017 Aug 1;83(16):e01144-17. doi: 10.1128/AEM.01144-17. WalshAM_2017__ERS1739834__bin.1 WalshAM_2017__ERS1739834__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days WalshAM_2017__ERS1739833__bin.1 88.90404851 0.24968789 271 1396081 37.85 6786 ERS1739833 ERR2014812 Ghana PRJEB20873 ERP023064 NCBI Walsh AM, Crispie F, Daari K, O'Sullivan O, Martin JC, Arthur CT, Claesson MJ, Scott KP, Cotter PD. Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks. Appl Environ Microbiol. 2017 Aug 1;83(16):e01144-17. doi: 10.1128/AEM.01144-17. WalshAM_2017__ERS1739834__bin.1 WalshAM_2017__ERS1739834__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days WalshAM_2017__ERS1739833__bin.2 95.84242725 2.088157378 449 4902194 58.02 15849 ERS1739833 ERR2014812 Ghana PRJEB20873 ERP023064 NCBI Walsh AM, Crispie F, Daari K, O'Sullivan O, Martin JC, Arthur CT, Claesson MJ, Scott KP, Cotter PD. Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks. Appl Environ Microbiol. 2017 Aug 1;83(16):e01144-17. doi: 10.1128/AEM.01144-17. MAG_19 WalshAM_2017__ERS1739833__bin.2 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella pneumoniae nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days WalshAM_2017__ERS1739834__bin.1 99.62546816 0 25 1701871 37.59 103712 ERS1739834 ERR2014811 Ghana PRJEB20873 ERP023064 NCBI Walsh AM, Crispie F, Daari K, O'Sullivan O, Martin JC, Arthur CT, Claesson MJ, Scott KP, Cotter PD. Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks. Appl Environ Microbiol. 2017 Aug 1;83(16):e01144-17. doi: 10.1128/AEM.01144-17. WalshAM_2017__ERS1739834__bin.1 WalshAM_2017__ERS1739834__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days WalshAM_2017__ERS1739835__bin.2 99.24242424 1.452020202 128 2350567 34.86 32086 ERS1739835 ERR2014810 Ghana PRJEB20873 ERP023064 NCBI Walsh AM, Crispie F, Daari K, O'Sullivan O, Martin JC, Arthur CT, Claesson MJ, Scott KP, Cotter PD. Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks. Appl Environ Microbiol. 2017 Aug 1;83(16):e01144-17. doi: 10.1128/AEM.01144-17. MAG_501 WalshAM_2017__ERS1739835__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days WalshAM_2017__ERS1739835__bin.3 82.6287567 3.034979424 448 2476182 44.77 7117 ERS1739835 ERR2014810 Ghana PRJEB20873 ERP023064 NCBI Walsh AM, Crispie F, Daari K, O'Sullivan O, Martin JC, Arthur CT, Claesson MJ, Scott KP, Cotter PD. Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks. Appl Environ Microbiol. 2017 Aug 1;83(16):e01144-17. doi: 10.1128/AEM.01144-17. FalardeauJ_2023__SRR20811279__bin.3 WalshAM_2017__ERS1739835__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days WalshAM_2017__ERS1739836__bin.1 54.8418021 0.683060109 270 886779 53.51 3375 ERS1739836 ERR2014809 Ghana PRJEB20873 ERP023064 NCBI Walsh AM, Crispie F, Daari K, O'Sullivan O, Martin JC, Arthur CT, Claesson MJ, Scott KP, Cotter PD. Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks. Appl Environ Microbiol. 2017 Aug 1;83(16):e01144-17. doi: 10.1128/AEM.01144-17. FontanaF_2023__SRR20746839__bin.4 MAG_41 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days WalshAM_2017__ERS1739836__bin.3 93.53308365 1.248439451 209 1564333 37.59 11350 ERS1739836 ERR2014809 Ghana PRJEB20873 ERP023064 NCBI Walsh AM, Crispie F, Daari K, O'Sullivan O, Martin JC, Arthur CT, Claesson MJ, Scott KP, Cotter PD. Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks. Appl Environ Microbiol. 2017 Aug 1;83(16):e01144-17. doi: 10.1128/AEM.01144-17. WalshAM_2017__ERS1739834__bin.1 WalshAM_2017__ERS1739834__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days WalshAM_2017__ERS1739837__bin.1 94.16417577 1.397415002 625 4727603 58.27 10782 ERS1739837 ERR2014808 Ghana PRJEB20873 ERP023064 NCBI Walsh AM, Crispie F, Daari K, O'Sullivan O, Martin JC, Arthur CT, Claesson MJ, Scott KP, Cotter PD. Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks. Appl Environ Microbiol. 2017 Aug 1;83(16):e01144-17. doi: 10.1128/AEM.01144-17. MAG_19 MAG_19 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella pneumoniae nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days WalshAM_2017__ERS1739838__bin.3 99.34456929 0.561797753 71 1690555 37.68 34474 ERS1739838 ERR2014807 Ghana PRJEB20873 ERP023064 NCBI Walsh AM, Crispie F, Daari K, O'Sullivan O, Martin JC, Arthur CT, Claesson MJ, Scott KP, Cotter PD. Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks. Appl Environ Microbiol. 2017 Aug 1;83(16):e01144-17. doi: 10.1128/AEM.01144-17. WalshAM_2017__ERS1739834__bin.1 WalshAM_2017__ERS1739834__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days WalshAM_2017__ERS1739838__bin.2 58.62068966 1.724137931 852 3254450 51.23 4270 ERS1739838 ERR2014807 Ghana PRJEB20873 ERP023064 NCBI Walsh AM, Crispie F, Daari K, O'Sullivan O, Martin JC, Arthur CT, Claesson MJ, Scott KP, Cotter PD. Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks. Appl Environ Microbiol. 2017 Aug 1;83(16):e01144-17. doi: 10.1128/AEM.01144-17. LeechJ_2020__ERS3967688__bin.2 WalshAM_2017__ERS1739838__bin.2 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days WalshAM_2017__ERS1739838__bin.4 76.03448276 1.724137931 525 4834940 58.13 13525 ERS1739838 ERR2014807 Ghana PRJEB20873 ERP023064 NCBI Walsh AM, Crispie F, Daari K, O'Sullivan O, Martin JC, Arthur CT, Claesson MJ, Scott KP, Cotter PD. Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks. Appl Environ Microbiol. 2017 Aug 1;83(16):e01144-17. doi: 10.1128/AEM.01144-17. MAG_19 MAG_19 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella pneumoniae nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days WalshAM_2017__ERS1739839__bin.3 94.96154001 1.38576779 158 1844443 39.39 21603 ERS1739839 ERR2014806 Ghana PRJEB20873 ERP023064 NCBI Walsh AM, Crispie F, Daari K, O'Sullivan O, Martin JC, Arthur CT, Claesson MJ, Scott KP, Cotter PD. Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks. Appl Environ Microbiol. 2017 Aug 1;83(16):e01144-17. doi: 10.1128/AEM.01144-17. CM_UNINA_FFOOD__FFOOD_270__bin.3 WalshAM_2017__ERR1981167__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus suis AA nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days WalshAM_2017__ERS1739839__bin.1 91.94152471 0.845533992 319 1699113 37.75 6905 ERS1739839 ERR2014806 Ghana PRJEB20873 ERP023064 NCBI Walsh AM, Crispie F, Daari K, O'Sullivan O, Martin JC, Arthur CT, Claesson MJ, Scott KP, Cotter PD. Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks. Appl Environ Microbiol. 2017 Aug 1;83(16):e01144-17. doi: 10.1128/AEM.01144-17. WalshAM_2017__ERS1739834__bin.1 WalshAM_2017__ERS1739834__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days WalshAM_2017__ERS1739839__bin.4 68.10344828 3.448275862 1285 3349016 58.28 2623 ERS1739839 ERR2014806 Ghana PRJEB20873 ERP023064 NCBI Walsh AM, Crispie F, Daari K, O'Sullivan O, Martin JC, Arthur CT, Claesson MJ, Scott KP, Cotter PD. Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks. Appl Environ Microbiol. 2017 Aug 1;83(16):e01144-17. doi: 10.1128/AEM.01144-17. MAG_6 WalshAM_2017__ERS1739839__bin.4 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella quasipneumoniae nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days WalshAM_2017__ERS1739840__bin.8 99.47089947 0 127 1800676 39.12 23056 ERS1739840 ERR2014805 Ghana PRJEB20873 ERP023064 NCBI Walsh AM, Crispie F, Daari K, O'Sullivan O, Martin JC, Arthur CT, Claesson MJ, Scott KP, Cotter PD. Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks. Appl Environ Microbiol. 2017 Aug 1;83(16):e01144-17. doi: 10.1128/AEM.01144-17. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_49 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days WalshAM_2017__ERS1739840__bin.6 97.36619548 1.135677178 190 1825957 37.75 14701 ERS1739840 ERR2014805 Ghana PRJEB20873 ERP023064 NCBI Walsh AM, Crispie F, Daari K, O'Sullivan O, Martin JC, Arthur CT, Claesson MJ, Scott KP, Cotter PD. Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks. Appl Environ Microbiol. 2017 Aug 1;83(16):e01144-17. doi: 10.1128/AEM.01144-17. WalshAM_2017__ERS1739834__bin.1 WalshAM_2017__ERS1739834__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days WalshAM_2017__ERS1739840__bin.2 53.896512800000004 1.38121547 299 956969 37.86 3452 ERS1739840 ERR2014805 Ghana PRJEB20873 ERP023064 NCBI Walsh AM, Crispie F, Daari K, O'Sullivan O, Martin JC, Arthur CT, Claesson MJ, Scott KP, Cotter PD. Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks. Appl Environ Microbiol. 2017 Aug 1;83(16):e01144-17. doi: 10.1128/AEM.01144-17. YouL_2022__SRR13308520__bin.4 MAG_165 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days WalshAM_2017__ERS1739840__bin.5 92.28849665 1.163522013 174 2536050 38.33 25131 ERS1739840 ERR2014805 Ghana PRJEB20873 ERP023064 NCBI Walsh AM, Crispie F, Daari K, O'Sullivan O, Martin JC, Arthur CT, Claesson MJ, Scott KP, Cotter PD. Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks. Appl Environ Microbiol. 2017 Aug 1;83(16):e01144-17. doi: 10.1128/AEM.01144-17. ODFM-BA-A-0139-001_Enterococcus_lactis_CICC_24101 MAG_27 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B lactis nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days WalshAM_2017__ERS1739840__bin.4 57.01857663 0.58480871 838 2338091 58.01 2866 ERS1739840 ERR2014805 Ghana PRJEB20873 ERP023064 NCBI Walsh AM, Crispie F, Daari K, O'Sullivan O, Martin JC, Arthur CT, Claesson MJ, Scott KP, Cotter PD. Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks. Appl Environ Microbiol. 2017 Aug 1;83(16):e01144-17. doi: 10.1128/AEM.01144-17. MAG_19 MAG_5 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella pneumoniae nunu nunu Animal Dairy milk beverage liquid none lactic mesophilic 1-2 days GCF_002872255.1_ASM287225v1_genomic 99.48 1.11 64 2582291 34.15 102702 GCF_002872255.1 GCF_002872255.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_002872255.1_ASM287225v1_genomic GCF_002872255.1_ASM287225v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus nuruki nuruk nuruk Plant Grain wheat starter culture solid low mixed mesophilic 7-14 days LeechJ_xxxx__AF66__bin.14 97.9040404 3.589466089 336 2424028 34.76 10448 SAMN39472485 SRR27593176 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 LeechJ_xxxx__AF66__bin.14 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis obiolor obiolor Plant Grain sorghum/millet beverage liquid low lactic mesophilic 1-3 days LeechJ_xxxx__AF66__bin.7 53.44827586 2.586206897 343 1339111 44.97 4661 SAMN39472485 SRR27593176 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 YuY_2022__SRR16950697__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum obiolor obiolor Plant Grain sorghum/millet beverage liquid low lactic mesophilic 1-3 days LeechJ_xxxx__AF66__bin.6 96.11708483 2.072310406 340 1965910 39.26 7724 SAMN39472485 SRR27593176 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 LeechJ_xxxx__AF66__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense obiolor obiolor Plant Grain sorghum/millet beverage liquid low lactic mesophilic 1-3 days LeechJ_xxxx__AF66__bin.9 97.13114754 0.273224044 166 1675939 53.39 16273 SAMN39472485 SRR27593176 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF66__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum obiolor obiolor Plant Grain sorghum/millet beverage liquid low lactic mesophilic 1-3 days LeechJ_xxxx__AF66__bin.8 99.38271605 2.263374486 241 1652853 37.64 10065 SAMN39472485 SRR27593176 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KharnaiorP_2023__SRR22859379__bin.8 KharnaiorP_2023__SRR22859379__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus obiolor obiolor Plant Grain sorghum/millet beverage liquid low lactic mesophilic 1-3 days LeechJ_xxxx__AF66__bin.2 95.55214724 1.656441718 197 1963491 45.03 14474 SAMN39472485 SRR27593176 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_004771075.1_ASM477107v1_genomic GCF_004771075.1_ASM477107v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella confusa obiolor obiolor Plant Grain sorghum/millet beverage liquid low lactic mesophilic 1-3 days LeechJ_xxxx__AF66__bin.4 98.58128834 0.613496933 53 1953534 38.06 78249 SAMN39472485 SRR27593176 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YulandiA_2020__SRS6115052__bin.21 LeechJ_xxxx__AF66__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella paramesenteroides obiolor obiolor Plant Grain sorghum/millet beverage liquid low lactic mesophilic 1-3 days LeechJ_xxxx__AF66__bin.10 56.71442781 1.66218638 987 2354268 31.62 2344 SAMN39472485 SRR27593176 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF66__bin.10 LeechJ_xxxx__AF66__bin.10 Bacillota;Clostridia;Clostridiales;Clostridiaceae;Clostridium Clostridium beijerinckii obiolor obiolor Plant Grain sorghum/millet beverage liquid low lactic mesophilic 1-3 days LeechJ_xxxx__AF66__bin.12 58.6667397 3.421827943 1023 2775208 36.47 2758 SAMN39472485 SRR27593176 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF15__bin.4 LeechJ_xxxx__AF66__bin.12 Bacillota;Bacilli;Bacillales;Bacillaceae_G;Bacillus_A Bacillus A pacificus obiolor obiolor Plant Grain sorghum/millet beverage liquid low lactic mesophilic 1-3 days LeechJ_xxxx__AF66__bin.13 56.50470219 0 338 1283812 39.4 4317 SAMN39472485 SRR27593176 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF66__bin.13 LeechJ_xxxx__AF66__bin.13 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus taiwanensis obiolor obiolor Plant Grain sorghum/millet beverage liquid low lactic mesophilic 1-3 days LeechJ_xxxx__AF12__bin.4 89.38979964 2.732240437 301 1514820 53.18 6368 SAMN39472432 SRR27593238 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF12__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum ogi ogi Plant Grain corn starch-based staple semi-solid low mixed mesophilic 1-3 days LeechJ_xxxx__AF12__bin.1 98.16017316 0 89 1810187 36.48 41851 SAMN39472432 SRR27593238 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 LeechJ_xxxx__AF12__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus ogi ogi Plant Grain corn starch-based staple semi-solid low mixed mesophilic 1-3 days LeechJ_xxxx__AF37__bin.3 91.50403331 1.202185792 244 1478184 53.51 8354 SAMN39472456 SRR27593212 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF37__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum ogi ogi Plant Grain corn starch-based staple semi-solid low mixed mesophilic 1-3 days LeechJ_xxxx__AF37__bin.1 62.33128834 1.278118609 56 1118661 44.86 43478 SAMN39472456 SRR27593212 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_004771075.1_ASM477107v1_genomic LeechJ_xxxx__AF03__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella confusa ogi ogi Plant Grain corn starch-based staple semi-solid low mixed mesophilic 1-3 days LeechJ_xxxx__AF46__bin.3 99.52651515 1.672979798 207 2507996 34.78 19904 SAMN39472465 SRR27593202 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 LeechJ_xxxx__AF46__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis ogi ogi Plant Grain corn starch-based staple semi-solid low mixed mesophilic 1-3 days LeechJ_xxxx__AF46__bin.1 96.2191358 1.446208113 300 1791103 37.2 9482 SAMN39472465 SRR27593202 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KharnaiorP_2023__SRR22859379__bin.8 KharnaiorP_2023__SRR22859379__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus ogi ogi Plant Grain corn starch-based staple semi-solid low mixed mesophilic 1-3 days LeechJ_xxxx__AF46__bin.5 72.32544552 0.669269381 349 1301312 45.06 3980 SAMN39472465 SRR27593202 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_004771075.1_ASM477107v1_genomic LeechJ_xxxx__AF46__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella confusa ogi ogi Plant Grain corn starch-based staple semi-solid low mixed mesophilic 1-3 days LeechJ_xxxx__AF50__bin.1 92.21193416 2.386831276 332 1548673 37.46 6420 SAMN39472469 SRR27593198 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KharnaiorP_2023__SRR22859379__bin.8 KharnaiorP_2023__SRR22859379__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus ogi ogi Plant Grain corn starch-based staple semi-solid low mixed mesophilic 1-3 days LeechJ_xxxx__AF60__bin.2 99.29453263 0.308641975 152 1744877 37.06 19249 SAMN39472479 SRR27593187 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KharnaiorP_2023__SRR22859379__bin.8 LeechJ_xxxx__AF60__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus ogi ogi Plant Grain corn starch-based staple semi-solid low mixed mesophilic 1-3 days LeechJ_xxxx__AF61__bin.2 70.67460317 0.977366255 273 879043 36.98 3534 SAMN39472480 SRR27593186 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KharnaiorP_2023__SRR22859379__bin.8 LeechJ_xxxx__AF61__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus ogi ogi Plant Grain corn starch-based staple semi-solid low mixed mesophilic 1-3 days LeechJ_xxxx__AF87__bin.3 89.42705746 1.689021361 257 1259188 53.52 6292 SAMN39472505 SRR27593154 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF33__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum ogi ogi Plant Grain corn starch-based staple semi-solid low mixed mesophilic 1-3 days LeechJ_xxxx__AF87__bin.4 78.37540649 2.569854388 225 1372331 36.99 8215 SAMN39472505 SRR27593154 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 LeechJ_xxxx__AF87__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus ogi ogi Plant Grain corn starch-based staple semi-solid low mixed mesophilic 1-3 days LeechJ_xxxx__AF87__bin.9 84.75677831 0.324675325 136 1105125 51.52 12271 SAMN39472505 SRR27593154 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic LeechJ_xxxx__AF88__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii ogi ogi Plant Grain corn starch-based staple semi-solid low mixed mesophilic 1-3 days LeechJ_xxxx__AF88__bin.7 98.50746269 0 163 2452401 58.69 21431 SAMN39472506 SRR27593153 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 LeechJ_xxxx__AF88__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lovaniensis ogi ogi Plant Grain corn starch-based staple semi-solid low mixed mesophilic 1-3 days LeechJ_xxxx__AF88__bin.2 59.45437986 0 153 764928 52.95 6201 SAMN39472506 SRR27593153 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF88__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum ogi ogi Plant Grain corn starch-based staple semi-solid low mixed mesophilic 1-3 days LeechJ_xxxx__AF88__bin.1 76.02837525 0.816607635 432 1481630 37.56 3674 SAMN39472506 SRR27593153 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 LeechJ_xxxx__AF88__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus ogi ogi Plant Grain corn starch-based staple semi-solid low mixed mesophilic 1-3 days LeechJ_xxxx__AF88__bin.5 94.71861472 0.909090909 222 1554338 51.15 9937 SAMN39472506 SRR27593153 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic LeechJ_xxxx__AF88__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii ogi ogi Plant Grain corn starch-based staple semi-solid low mixed mesophilic 1-3 days LeechJ_xxxx__AF88__bin.4 97.2826087 2.173913043 165 1778023 48.97 15951 SAMN39472506 SRR27593153 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__P-22__bin.8 GCF_001435935.1_ASM143593v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus panis ogi ogi Plant Grain corn starch-based staple semi-solid low mixed mesophilic 1-3 days LeechJ_xxxx__AF09__bin.3 80.10553464 1.56327615 685 3010606 44.22 5283 SAMN39472429 SRR27593159 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602153__bin.4 LeechJ_xxxx__AF09__bin.3 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus subtilis ogiri ogiri Plant Legumes melon seed other bean paste semi-solid none lactic mesophilic 2-4 days LeechJ_xxxx__AF09__bin.10 81.03448276 0 17 3598948 46.18 443852 SAMN39472429 SRR27593159 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. TomarS_2023__SRR15925267__bin.15 TomarS_2023__SRR15925267__bin.15 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus licheniformis ogiri ogiri Plant Legumes melon seed other bean paste semi-solid none lactic mesophilic 2-4 days LeechJ_xxxx__AF09__bin.2 58.91891892 0 17 1738340 39.04 152650 SAMN39472429 SRR27593159 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. EBC_089.16 EBC_089.16 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Proteus Proteus mirabilis ogiri ogiri Plant Legumes melon seed other bean paste semi-solid none lactic mesophilic 2-4 days LeechJ_xxxx__AF09__bin.7 98.06629834 0.552486188 185 2361060 36.12 19854 SAMN39472429 SRR27593159 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF24__bin.1 LeechJ_xxxx__AF09__bin.7 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus simulans ogiri ogiri Plant Legumes melon seed other bean paste semi-solid none lactic mesophilic 2-4 days LeechJ_xxxx__AF15__bin.8 97.16981132 0.950747366 269 2302329 38.7 11601 SAMN39472434 SRR27593236 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0139-001_Enterococcus_lactis_CICC_24101 MAG_27 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B lactis ogiri ogiri Plant Legumes melon seed other bean paste semi-solid none lactic mesophilic 2-4 days LeechJ_xxxx__AF15__bin.5 95.61778001 4.972375691 303 1903008 37.63 7832 SAMN39472434 SRR27593236 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF57__bin.8 LeechJ_xxxx__AF57__bin.8 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus_A Vagococcus A lutrae ogiri ogiri Plant Legumes melon seed other bean paste semi-solid none lactic mesophilic 2-4 days LeechJ_xxxx__AF15__bin.2 88.93115942 4.460638999 340 2136342 34.12 8769 SAMN39472434 SRR27593236 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF57__bin.5 LeechJ_xxxx__AF15__bin.2 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes Atopostipes pullistercoris ogiri ogiri Plant Legumes melon seed other bean paste semi-solid none lactic mesophilic 2-4 days LeechJ_xxxx__AF15__bin.4 77.41789117 2.841329195 974 3764509 35.82 4593 SAMN39472434 SRR27593236 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF15__bin.4 LeechJ_xxxx__AF15__bin.4 Bacillota;Bacilli;Bacillales;Bacillaceae_G;Bacillus_A Bacillus A pacificus ogiri ogiri Plant Legumes melon seed other bean paste semi-solid none lactic mesophilic 2-4 days LeechJ_xxxx__AF15__bin.6 78.99056793 1.865342163 341 1474171 40.35 5211 SAMN39472434 SRR27593236 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF15__bin.6 LeechJ_xxxx__AF15__bin.6 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Savagea Savagea sp030147435 ogiri ogiri Plant Legumes melon seed other bean paste semi-solid none lactic mesophilic 2-4 days LeechJ_xxxx__AF15__bin.7 91.44493718 0.609756098 239 1509611 28.76 8591 SAMN39472434 SRR27593236 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF15__bin.7 LeechJ_xxxx__AF15__bin.7 Bacillota;Clostridia;Tissierellales;Peptoniphilaceae;NA NA ogiri ogiri Plant Legumes melon seed other bean paste semi-solid none lactic mesophilic 2-4 days LeechJ_xxxx__AF45__bin.4 96.70916818 3.636915604 380 3414187 37.45 13891 SAMN39472464 SRR27593203 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_608 LeechJ_xxxx__AF45__bin.4 Bacillota;Bacilli;Bacillales_B;Caldibacillaceae;Caldifermentibacillus Caldifermentibacillus hisashii ogiri ogiri Plant Legumes melon seed other bean paste semi-solid none lactic mesophilic 2-4 days LeechJ_xxxx__AF45__bin.1 97.34643735 3.093093093 441 3608620 38.61 13167 SAMN39472464 SRR27593203 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. EBC_089.16 EBC_089.16 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Proteus Proteus mirabilis ogiri ogiri Plant Legumes melon seed other bean paste semi-solid none lactic mesophilic 2-4 days LeechJ_xxxx__AF45__bin.11 97.22222222 3.224206349 371 2395754 59.02 8479 SAMN39472464 SRR27593203 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF45__bin.11 LeechJ_xxxx__AF45__bin.11 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium jeikeium D ogiri ogiri Plant Legumes melon seed other bean paste semi-solid none lactic mesophilic 2-4 days LeechJ_xxxx__AF45__bin.5 92.22657099 1.350837139 182 1883096 65.64 18096 SAMN39472464 SRR27593203 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF45__bin.5 LeechJ_xxxx__AF45__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030152825 ogiri ogiri Plant Legumes melon seed other bean paste semi-solid none lactic mesophilic 2-4 days LeechJ_xxxx__AF45__bin.7 93.2096273 2.23132969 265 3706995 43.59 24207 SAMN39472464 SRR27593203 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF45__bin.7 LeechJ_xxxx__AF45__bin.7 Bacillota;Bacilli;Bacillales_B;Bacillaceae_C;Siminovitchia NA ogiri ogiri Plant Legumes melon seed other bean paste semi-solid none lactic mesophilic 2-4 days LeechJ_xxxx__AF45__bin.9 97.79005525 4.660893375 160 2948534 34.41 53023 SAMN39472464 SRR27593203 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF45__bin.9 LeechJ_xxxx__AF45__bin.9 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus condimenti ogiri ogiri Plant Legumes melon seed other bean paste semi-solid none lactic mesophilic 2-4 days LeechJ_xxxx__AF57__bin.12 52.32704403 0.188679245 50 1837081 41.36 74139 SAMN39472476 SRR27593190 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YulandiA_2020__SRS6115053__bin.10 YulandiA_2020__SRS6115053__bin.10 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_D Enterococcus D gallinarum ogiri ogiri Plant Legumes melon seed other bean paste semi-solid none lactic mesophilic 2-4 days LeechJ_xxxx__AF57__bin.10 90.66316097 0.976017847 299 1492695 38.29 6305 SAMN39472476 SRR27593190 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YulandiA_2020__SRS6115052__bin.21 LeechJ_xxxx__AF57__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella paramesenteroides ogiri ogiri Plant Legumes melon seed other bean paste semi-solid none lactic mesophilic 2-4 days LeechJ_xxxx__AF57__bin.11 90.59991255 0.717447347 246 1514756 38.02 7366 SAMN39472476 SRR27593190 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 LeechJ_xxxx__AF57__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius ogiri ogiri Plant Legumes melon seed other bean paste semi-solid none lactic mesophilic 2-4 days LeechJ_xxxx__AF57__bin.6 98.41432757 0.941759603 197 3619446 43.87 28525 SAMN39472476 SRR27593190 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602153__bin.4 LeechJ_xxxx__AF57__bin.6 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus subtilis ogiri ogiri Plant Legumes melon seed other bean paste semi-solid none lactic mesophilic 2-4 days LeechJ_xxxx__AF57__bin.8 98.34254144 0.695063269 82 1884118 37.63 39335 SAMN39472476 SRR27593190 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF57__bin.8 LeechJ_xxxx__AF57__bin.8 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus_A Vagococcus A lutrae ogiri ogiri Plant Legumes melon seed other bean paste semi-solid none lactic mesophilic 2-4 days LeechJ_xxxx__AF57__bin.5 94.56521739 2.309782609 70 2108554 34.7 53375 SAMN39472476 SRR27593190 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF57__bin.5 LeechJ_xxxx__AF57__bin.5 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Atopostipes Atopostipes pullistercoris ogiri ogiri Plant Legumes melon seed other bean paste semi-solid none lactic mesophilic 2-4 days LeechJ_xxxx__AF57__bin.1 97.24137931 0.752351097 131 3974679 27.93 55984 SAMN39472476 SRR27593190 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF57__bin.1 LeechJ_xxxx__AF57__bin.1 Bacillota;Clostridia;Clostridiales;Clostridiaceae;Clostridium_F Clostridium F botulinum ogiri ogiri Plant Legumes melon seed other bean paste semi-solid none lactic mesophilic 2-4 days LeechJ_xxxx__AF47__bin.4 95.92896175 4.792184136 296 3191104 37.4 18254 SAMN39472466 SRR27593201 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_608 LeechJ_xxxx__AF47__bin.4 Bacillota;Bacilli;Bacillales_B;Caldibacillaceae;Caldifermentibacillus Caldifermentibacillus hisashii okpehe okpehe Plant Legumes Prosopis africana seeds other bean paste semi-solid none lactic mesophilic 2-3 days LeechJ_xxxx__AF47__bin.7 99.00662252 2.869757174 208 2907095 36.37 26268 SAMN39472466 SRR27593201 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967702__bin.3 LeechJ_xxxx__AF47__bin.7 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Kurthia Kurthia gibsonii okpehe okpehe Plant Legumes Prosopis africana seeds other bean paste semi-solid none lactic mesophilic 2-3 days LeechJ_xxxx__AF47__bin.3 94.21784023 2.494481711 485 3482303 43.78 9685 SAMN39472466 SRR27593201 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602153__bin.4 LeechJ_xxxx__AF47__bin.3 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus subtilis okpehe okpehe Plant Legumes Prosopis africana seeds other bean paste semi-solid none lactic mesophilic 2-3 days LeechJ_xxxx__AF47__bin.1 95.93169262 1.197053407 136 2061283 37.86 30900 SAMN39472466 SRR27593201 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF57__bin.8 LeechJ_xxxx__AF47__bin.1 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus_A Vagococcus A lutrae okpehe okpehe Plant Legumes Prosopis africana seeds other bean paste semi-solid none lactic mesophilic 2-3 days LeechJ_xxxx__AF47__bin.6 98.67549669 1.214128035 40 2381039 41.61 99626 SAMN39472466 SRR27593201 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF47__bin.6 LeechJ_xxxx__AF47__bin.6 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Savagea Savagea sp030152265 okpehe okpehe Plant Legumes Prosopis africana seeds other bean paste semi-solid none lactic mesophilic 2-3 days LeechJ_xxxx__AF58__bin.3 92.3190545 4.575536789 620 3084560 37.26 5893 SAMN39472477 SRR27593189 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_608 LeechJ_xxxx__AF58__bin.3 Bacillota;Bacilli;Bacillales_B;Caldibacillaceae;Caldifermentibacillus Caldifermentibacillus hisashii okpehe okpehe Plant Legumes Prosopis africana seeds other bean paste semi-solid none lactic mesophilic 2-3 days LeechJ_xxxx__AF58__bin.6 90.99318455 1.442495181 425 3223890 44.1 10443 SAMN39472477 SRR27593189 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602153__bin.4 LeechJ_xxxx__AF83__bin.8 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus subtilis okpehe okpehe Plant Legumes Prosopis africana seeds other bean paste semi-solid none lactic mesophilic 2-3 days LeechJ_xxxx__AF58__bin.5 95.48802947 3.959484346 139 1890407 38 23526 SAMN39472477 SRR27593189 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF57__bin.8 LeechJ_xxxx__AF58__bin.5 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus_A Vagococcus A lutrae okpehe okpehe Plant Legumes Prosopis africana seeds other bean paste semi-solid none lactic mesophilic 2-3 days LeechJ_xxxx__AF58__bin.2 93.37748344 2.739313666 375 2789851 36.22 9668 SAMN39472477 SRR27593189 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF80__bin.2 LeechJ_xxxx__AF80__bin.2 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Ureibacillus Ureibacillus thermosphaericus okpehe okpehe Plant Legumes Prosopis africana seeds other bean paste semi-solid none lactic mesophilic 2-3 days LeechJ_xxxx__AF58__bin.4 99.17012448 1.348547718 49 4201491 46.35 194993 SAMN39472477 SRR27593189 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. EBC_088.5 EBC_088.5 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus glycinifermentans okpehe okpehe Plant Legumes Prosopis africana seeds other bean paste semi-solid none lactic mesophilic 2-3 days LeechJ_2020__ERS3967736__bin.3 97.421875 1.261160714 227 2237627 46.21 16057 ERS3967736 ERR4757851 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis pickle okra okra Plant Vegetables_Aromatics okra pickled vegetables solid none lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967736__bin.6 90.24331739 4.198232323 540 2331752 34.92 5153 ERS3967736 ERR4757851 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MAG_501 LeechJ_2020__ERS3967736__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis pickle okra okra Plant Vegetables_Aromatics okra pickled vegetables solid none lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967736__bin.1 99.38271605 2.777777778 90 2976436 44.89 55404 ERS3967736 ERR4757851 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum pickle okra okra Plant Vegetables_Aromatics okra pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335008__bin.9 86.56 1.28 132 1994696 37.27 32622 SAMN26688214 SRR18335008 Saudi Arabia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. YasirM_2022__SRR18335001__bin.1 YasirM_2022__SRR18335001__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus ethanolidurans pickle onion onion_pickle Plant Vegetables_Aromatics onion pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335010__bin.2 90.65 0.09 65 2392642 52.31 53806 SAMN26688212 SRR18335010 Saudi Arabia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. YasirM_2022__SRR18335012__bin.3 YasirM_2022__SRR18335010__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus namurensis A pickle onion onion_pickle Plant Vegetables_Aromatics onion pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335010__bin.4 94.23 2.97 308 3034744 45.01 15372 SAMN26688212 SRR18335010 Saudi Arabia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum pickle onion onion_pickle Plant Vegetables_Aromatics onion pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335010__bin.5 85.88 4.85 303 2033209 52.08 9326 SAMN26688212 SRR18335010 Saudi Arabia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. LiZ_2019__SRS3379169__bin.2 LiZ_2019__SRS3379169__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus suantsaii pickle onion onion_pickle Plant Vegetables_Aromatics onion pickled vegetables solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335010__bin.6 69.68 0 378 1128231 37.97 3136 SAMN26688212 SRR18335010 Saudi Arabia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. YasirM_2022__SRR18334997__bin.9 YasirM_2022__SRR18334997__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus acetotolerans pickle onion onion_pickle Plant Vegetables_Aromatics onion pickled vegetables solid none lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967694__bin.3 70.1 0.6 731 9139842 39.3 21044 ERS3967694 ERR4757809 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967694__bin.3 LeechJ_2020__ERS3967694__bin.3 Ascomycota;Saccharomycetes;Saccharomycetales;unknown;Starmerella Starmerella bacillaris orange orange Plant Fruit orange pickled fruit solid none lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967694__bin.5 95.4 1.7 658 11722750 45.72 24969 ERS3967694 ERR4757809 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967694__bin.5 LeechJ_2020__ERS3967694__bin.5 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kazachstania Kazachstania saulgeensis orange orange Plant Fruit orange pickled fruit solid none lactic mesophilic 1 day - 3 months LeechJ_xxxx__AF18__bin.1 95.90163934 0.819672131 126 1640813 53.48 23472 SAMN39472437 SRR27593233 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 YulandiA_2020__SRS6115052__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum otika otika Plant Grain sorghum beverage liquid medium lactic mesophilic 3-7 days LeechJ_xxxx__AF18__bin.7 51.72413793 0 115 932594 35.78 11716 SAMN39472437 SRR27593233 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 LeechJ_xxxx__AF18__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus otika otika Plant Grain sorghum beverage liquid medium lactic mesophilic 3-7 days LeechJ_xxxx__AF18__bin.5 66.37931034 1.724137931 179 623882 51.85 3763 SAMN39472437 SRR27593233 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic LeechJ_xxxx__AF18__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii otika otika Plant Grain sorghum beverage liquid medium lactic mesophilic 3-7 days LeechJ_xxxx__AF18__bin.2 95.10869565 0.543478261 95 1402264 52.5 20462 SAMN39472437 SRR27593233 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF18__bin.2 LeechJ_xxxx__AF18__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus galli otika otika Plant Grain sorghum beverage liquid medium lactic mesophilic 3-7 days LeechJ_xxxx__AF41__bin.7 98.37662338 0 72 1724015 36.34 32390 SAMN39472460 SRR27593208 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 LeechJ_xxxx__AF41__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus otika otika Plant Grain sorghum beverage liquid medium lactic mesophilic 3-7 days LeechJ_xxxx__AF41__bin.1 94.18463651 0 166 1544692 54.06 13582 SAMN39472460 SRR27593208 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009428965.1_ASM942896v1_genomic LeechJ_xxxx__AF41__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus pontis otika otika Plant Grain sorghum beverage liquid medium lactic mesophilic 3-7 days LeechJ_xxxx__AF41__bin.5 94.79166667 1.136363636 197 1611359 48.97 11440 SAMN39472460 SRR27593208 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__P-22__bin.8 LeechJ_xxxx__AF41__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus panis otika otika Plant Grain sorghum beverage liquid medium lactic mesophilic 3-7 days LeechJ_xxxx__AF41__bin.3 73.83540373 0 57 960491 39.33 39817 SAMN39472460 SRR27593208 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF41__bin.3 LeechJ_xxxx__AF41__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus merdavium otika otika Plant Grain sorghum beverage liquid medium lactic mesophilic 3-7 days LeechJ_xxxx__AF41__bin.4 98.80952381 0.405844156 47 1415810 38.16 56742 SAMN39472460 SRR27593208 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF41__bin.4 LeechJ_xxxx__AF41__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus amylolyticus otika otika Plant Grain sorghum beverage liquid medium lactic mesophilic 3-7 days LeechJ_xxxx__AF63__bin.8 96.4673913 1.268115942 168 1742150 42.1 15518 SAMN39472482 SRR27593183 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 LeechJ_xxxx__AF63__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus otiru otiru Plant Legumes African yam bean seeds other bean paste semi-solid none lactic mesophilic 1-2 weeks LeechJ_xxxx__AF63__bin.11 96.34597441 2.518532095 160 2405758 34.87 33558 SAMN39472482 SRR27593183 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 LeechJ_xxxx__AF63__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis otiru otiru Plant Legumes African yam bean seeds other bean paste semi-solid none lactic mesophilic 1-2 weeks LeechJ_xxxx__AF63__bin.6 78.00282922 1.872427984 323 1138345 37.12 4053 SAMN39472482 SRR27593183 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KharnaiorP_2023__SRR22859379__bin.8 LeechJ_xxxx__AF60__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus otiru otiru Plant Legumes African yam bean seeds other bean paste semi-solid none lactic mesophilic 1-2 weeks LeechJ_xxxx__AF63__bin.10 93.20754717 1.320754717 114 3117680 40.81 42607 SAMN39472482 SRR27593183 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YulandiA_2020__SRS6115053__bin.10 YulandiA_2020__SRS6115053__bin.10 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_D Enterococcus D gallinarum otiru otiru Plant Legumes African yam bean seeds other bean paste semi-solid none lactic mesophilic 1-2 weeks LeechJ_xxxx__AF63__bin.4 85.91292674 2.373417722 1191 3972864 42.69 3662 SAMN39472482 SRR27593183 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF63__bin.4 LeechJ_xxxx__AF63__bin.4 Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Lacrimispora Lacrimispora xylanisolvens otiru otiru Plant Legumes African yam bean seeds other bean paste semi-solid none lactic mesophilic 1-2 weeks LeechJ_xxxx__AF63__bin.3 54.8 0.2 2224 7063344 38.25 3417 SAMN39472482 SRR27593183 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2597__bin.1 LeechJ_xxxx__AF63__bin.3 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia kudriavzevii otiru otiru Plant Legumes African yam bean seeds other bean paste semi-solid none lactic mesophilic 1-2 weeks GCF_019656075.1_ASM1965607v1_genomic 99.33 0.56 28 1385869 35.41 123726 GCF_019656075.1 GCF_019656075.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_019656075.1_ASM1965607v1_genomic GCF_019656075.1_ASM1965607v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc palmae wine palm palm_wine Plant Sugar palm sap beverage liquid medium mixed mesophilic 1-2 weeks LeechJ_xxxx__AF19__bin.4 99.42410531 0 54 1895172 46.14 80734 SAMN39472438 SRR27593232 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 LeechJ_xxxx__AF21__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis wine palm palm_wine Plant Sugar palm sap beverage liquid medium mixed mesophilic 1-2 weeks LeechJ_xxxx__AF19__bin.3 97.46945899 1.460901875 25 1250361 44.65 78322 SAMN39472438 SRR27593232 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF21__bin.7 LeechJ_xxxx__AF21__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Fructobacillus Fructobacillus sp028764065 wine palm palm_wine Plant Sugar palm sap beverage liquid medium mixed mesophilic 1-2 weeks LeechJ_xxxx__AF19__bin.7 73.64341085 0 107 1088515 34.74 16260 SAMN39472438 SRR27593232 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF55__bin.16 LeechJ_xxxx__AF91__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus NA wine palm palm_wine Plant Sugar palm sap beverage liquid medium mixed mesophilic 1-2 weeks LeechJ_xxxx__AF21__bin.4 100 0 53 1885564 46.16 72669 SAMN39472440 SRR27593230 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 LeechJ_xxxx__AF21__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis wine palm palm_wine Plant Sugar palm sap beverage liquid medium mixed mesophilic 1-2 weeks LeechJ_xxxx__AF21__bin.7 97.9930192 1.178010471 35 1272065 44.51 53806 SAMN39472440 SRR27593230 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF21__bin.7 LeechJ_xxxx__AF21__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Fructobacillus Fructobacillus sp028764065 wine palm palm_wine Plant Sugar palm sap beverage liquid medium mixed mesophilic 1-2 weeks LeechJ_xxxx__AF21__bin.6 62.27390181 1.162790698 60 888089 34.81 28285 SAMN39472440 SRR27593230 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF55__bin.16 LeechJ_xxxx__AF91__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus NA wine palm palm_wine Plant Sugar palm sap beverage liquid medium mixed mesophilic 1-2 weeks LeechJ_xxxx__AF23__bin.3 86.534348 2.488687783 369 1608315 46.22 5077 SAMN39472442 SRR27593227 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 LeechJ_xxxx__AF21__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis wine palm palm_wine Plant Sugar palm sap beverage liquid medium mixed mesophilic 1-2 weeks LeechJ_xxxx__AF23__bin.2 58.62068966 0 90 790227 34.79 15081 SAMN39472442 SRR27593227 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF55__bin.16 LeechJ_xxxx__AF91__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus NA wine palm palm_wine Plant Sugar palm sap beverage liquid medium mixed mesophilic 1-2 weeks LeechJ_xxxx__AF23__bin.7 96.40883978 0 109 1705876 50.43 20459 SAMN39472442 SRR27593227 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF23__bin.7 LeechJ_xxxx__AF23__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus NA wine palm palm_wine Plant Sugar palm sap beverage liquid medium mixed mesophilic 1-2 weeks LeechJ_xxxx__AF23__bin.9 89.39464215 2.705627706 261 1547404 31.77 8080 SAMN39472442 SRR27593227 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF23__bin.9 LeechJ_xxxx__AF23__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus NA wine palm palm_wine Plant Sugar palm sap beverage liquid medium mixed mesophilic 1-2 weeks LeechJ_xxxx__AF55__bin.11 71.17715618 2.484574249 393 1340479 46.19 3566 SAMN39472474 SRR27593192 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 LeechJ_xxxx__AF55__bin.11 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis wine palm palm_wine Plant Sugar palm sap beverage liquid medium mixed mesophilic 1-2 weeks LeechJ_xxxx__AF55__bin.14 96.08378871 0.182149362 113 1650383 53.47 23625 SAMN39472474 SRR27593192 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF55__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum wine palm palm_wine Plant Sugar palm sap beverage liquid medium mixed mesophilic 1-2 weeks LeechJ_xxxx__AF55__bin.8 86.30379101 1.274077047 308 1482766 39.26 5766 SAMN39472474 SRR27593192 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 LeechJ_xxxx__AF55__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc citreum wine palm palm_wine Plant Sugar palm sap beverage liquid medium mixed mesophilic 1-2 weeks LeechJ_xxxx__AF55__bin.16 97.48062016 1.034206964 155 1636765 35.02 16445 SAMN39472474 SRR27593192 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF55__bin.16 LeechJ_xxxx__AF55__bin.16 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus NA wine palm palm_wine Plant Sugar palm sap beverage liquid medium mixed mesophilic 1-2 weeks LeechJ_xxxx__AF55__bin.10 75.65830721 1.724137931 109 1092614 45.7 13372 SAMN39472474 SRR27593192 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF55__bin.10 LeechJ_xxxx__AF55__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Fructobacillus Fructobacillus fructosus wine palm palm_wine Plant Sugar palm sap beverage liquid medium mixed mesophilic 1-2 weeks LeechJ_xxxx__AF55__bin.3 57.24137931 2.586206897 39 935816 42.84 46142 SAMN39472474 SRR27593192 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF55__bin.3 LeechJ_xxxx__AF55__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Fructobacillus NA wine palm palm_wine Plant Sugar palm sap beverage liquid medium mixed mesophilic 1-2 weeks LeechJ_xxxx__AF55__bin.6 92.12133953 1.725361197 199 2718563 56.71 20145 SAMN39472474 SRR27593192 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF55__bin.6 LeechJ_xxxx__AF55__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Zymobacter Zymobacter palmae wine palm palm_wine Plant Sugar palm sap beverage liquid medium mixed mesophilic 1-2 weeks LeechJ_xxxx__AF55__bin.7 95.8 1.9 1329 11083040 38.26 11862 SAMN39472474 SRR27593192 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 LeechJ_xxxx__AF55__bin.7 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae wine palm palm_wine Plant Sugar palm sap beverage liquid medium mixed mesophilic 1-2 weeks LeechJ_xxxx__AF91__bin.4 86.52778594 2.036199095 438 1555599 46.01 3981 SAMN39472508 SRR27593151 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 LeechJ_xxxx__AF91__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis wine palm palm_wine Plant Sugar palm sap beverage liquid medium mixed mesophilic 1-2 weeks LeechJ_xxxx__AF91__bin.1 94.26229508 1.202185792 196 1623199 53.47 12232 SAMN39472508 SRR27593151 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF55__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum wine palm palm_wine Plant Sugar palm sap beverage liquid medium mixed mesophilic 1-2 weeks LeechJ_xxxx__AF91__bin.7 97.32988803 1.287020473 264 1873846 35.08 10205 SAMN39472508 SRR27593151 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF55__bin.16 LeechJ_xxxx__AF91__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus NA wine palm palm_wine Plant Sugar palm sap beverage liquid medium mixed mesophilic 1-2 weeks LeechJ_xxxx__AF91__bin.2 65.47061795 0.543478261 339 1197919 49.52 3875 SAMN39472508 SRR27593151 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__P-22__bin.8 LeechJ_xxxx__AF91__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus panis wine palm palm_wine Plant Sugar palm sap beverage liquid medium mixed mesophilic 1-2 weeks YasirM_2022__SRR18335005__bin.2 99.56 2.25 177 1632196 39.28 15102 SAMN26688217 SRR18335005 Saudi Arabia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc citreum pickle papaya papaya_pickle Plant Fruit papaya pickled fruit solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335006__bin.2 96.14 0.64 126 1622499 39.17 20976 SAMN26688216 SRR18335006 Saudi Arabia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc citreum pickle papaya papaya_pickle Plant Fruit papaya pickled fruit solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335007__bin.1 69.49 3.57 1252 3304455 58.91 2689 SAMN26688215 SRR18335007 Saudi Arabia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. YasirM_2022__SRR18335007__bin.1 YasirM_2022__SRR18335007__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E helleri pickle papaya papaya_pickle Plant Fruit papaya pickled fruit solid none lactic mesophilic 1 day - 3 months YasirM_2022__SRR18335007__bin.3 80.35 2.68 563 2364679 48.59 5207 SAMN26688215 SRR18335007 Saudi Arabia PRJNA816670 SRP364223 NCBI Muhammad Yasir, Ibrahim A. Al-Zahrani, Fehmida Bibi, Moataz Abd El Ghany, Esam I. Azhar. New insights of bacterial communities in fermented vegetables from shotgun metagenomics and identification of antibiotic resistance genes and probiotic bacteria. Food Research International, Volume 157, 2022, 111190. https://doi.org/10.1016/j.foodres.2022.111190. YasirM_2022__SRR18335007__bin.3 YasirM_2022__SRR18335007__bin.3 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Rosenbergiella Rosenbergiella epipactidis pickle papaya papaya_pickle Plant Fruit papaya pickled fruit solid none lactic mesophilic 1 day - 3 months MilaniC_2019__SRR7587240__bin.1 90.51 1.1 495 2296836 72.18 5956 SAMN09710140 SRR7587240 Italy PRJNA482503 SRP155009 NCBI Milani C, Duranti S, Napoli S, Alessandri G, Mancabelli L, Anzalone R, Longhi G, Viappiani A, Mangifesta M, Lugli GA, Bernasconi S, Ossiprandi MC, van Sinderen D, Ventura M, Turroni F. Colonization of the human gut by bovine bacteria present in Parmesan cheese. Nat Commun. 2019 Mar 20;10(1):1286. doi: 10.1038/s41467-019-09303-w. CM_UNINA_FFOOD__FFOOD_286__bin.4 MilaniC_2019__SRS3591582__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia kristinae cheese parmesan parmesan_cheese Animal Dairy milk cheese solid low lactic mesophilic 6-12 months MilaniC_2019__SRR7587240__bin.10 94.81 1 152 1615539 53.24 15109 SAMN09710140 SRR7587240 Italy PRJNA482503 SRP155009 NCBI Milani C, Duranti S, Napoli S, Alessandri G, Mancabelli L, Anzalone R, Longhi G, Viappiani A, Mangifesta M, Lugli GA, Bernasconi S, Ossiprandi MC, van Sinderen D, Ventura M, Turroni F. Colonization of the human gut by bovine bacteria present in Parmesan cheese. Nat Commun. 2019 Mar 20;10(1):1286. doi: 10.1038/s41467-019-09303-w. FontanaF_2023__SRR20746839__bin.4 FontanaF_2023__SRR20746839__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum cheese parmesan parmesan_cheese Animal Dairy milk cheese solid low lactic mesophilic 6-12 months MilaniC_2019__SRR7587240__bin.19 92.77 4.05 333 2099318 66 8892 SAMN09710140 SRR7587240 Italy PRJNA482503 SRP155009 NCBI Milani C, Duranti S, Napoli S, Alessandri G, Mancabelli L, Anzalone R, Longhi G, Viappiani A, Mangifesta M, Lugli GA, Bernasconi S, Ossiprandi MC, van Sinderen D, Ventura M, Turroni F. Colonization of the human gut by bovine bacteria present in Parmesan cheese. Nat Commun. 2019 Mar 20;10(1):1286. doi: 10.1038/s41467-019-09303-w. MilaniC_2019__SRR7587240__bin.19 MilaniC_2019__SRR7587240__bin.19 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Pseudoclavibacter_A Pseudoclavibacter A sp008831235 cheese parmesan parmesan_cheese Animal Dairy milk cheese solid low lactic mesophilic 6-12 months MilaniC_2019__SRR7587240__bin.8 90.98 3.44 336 1830686 64.19 7047 SAMN09710140 SRR7587240 Italy PRJNA482503 SRP155009 NCBI Milani C, Duranti S, Napoli S, Alessandri G, Mancabelli L, Anzalone R, Longhi G, Viappiani A, Mangifesta M, Lugli GA, Bernasconi S, Ossiprandi MC, van Sinderen D, Ventura M, Turroni F. Colonization of the human gut by bovine bacteria present in Parmesan cheese. Nat Commun. 2019 Mar 20;10(1):1286. doi: 10.1038/s41467-019-09303-w. CM_UNINA_FFOOD__FFOOD_296__bin.3 MilaniC_2019__SRS3591582__bin.12 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense cheese parmesan parmesan_cheese Animal Dairy milk cheese solid low lactic mesophilic 6-12 months GCF_019444005.1_ASM1944400v1_genomic 99.48 0.13 2 2563476 36.83 2487196 GCF_019444005.1 GCF_019444005.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 GCF_019444005.1_ASM1944400v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii wine partially_fermented_wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months KharnaiorP_2023__SRR22859379__bin.1 76.56 1.5 163 1563705 42.04 10947 SAMN32359437 SRR22859379 India PRJNA914873 SRP414396 NCBI Kharnaior P, Tamang JP. Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics. Int J Food Microbiol. 2023 Dec 16;407:110417. doi: 10.1016/j.ijfoodmicro.2023.110417. KumarJ_2019__SRS4562503__bin.9 KharnaiorP_2023__SRR22859379__bin.1 Bacillota;Bacilli;Staphylococcales;Salinicoccaceae;Jeotgalicoccus Jeotgalicoccus nanhaiensis peha peha Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 days KharnaiorP_2023__SRR22859379__bin.11 90.65 1.38 278 3166618 37.68 17507 SAMN32359437 SRR22859379 India PRJNA914873 SRP414396 NCBI Kharnaior P, Tamang JP. Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics. Int J Food Microbiol. 2023 Dec 16;407:110417. doi: 10.1016/j.ijfoodmicro.2023.110417. MAG_608 MAG_608 Bacillota;Bacilli;Bacillales_B;Caldibacillaceae;Caldifermentibacillus Caldifermentibacillus hisashii peha peha Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 days KharnaiorP_2023__SRR22859379__bin.13 99.99 3.2 194 2645336 33.24 22681 SAMN32359437 SRR22859379 India PRJNA914873 SRP414396 NCBI Kharnaior P, Tamang JP. Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics. Int J Food Microbiol. 2023 Dec 16;407:110417. doi: 10.1016/j.ijfoodmicro.2023.110417. YangC_2021__SRR13259377__bin.4 KharnaiorP_2023__SRR22859379__bin.13 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum A peha peha Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 days KharnaiorP_2023__SRR22859379__bin.14 81.29 3.72 211 1426251 42.58 8355 SAMN32359437 SRR22859379 India PRJNA914873 SRP414396 NCBI Kharnaior P, Tamang JP. Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics. Int J Food Microbiol. 2023 Dec 16;407:110417. doi: 10.1016/j.ijfoodmicro.2023.110417. CM_UNINA_FFOOD__FFOOD_425__bin.9 KharnaiorP_2023__SRR22859379__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici peha peha Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 days KharnaiorP_2023__SRR22859379__bin.2 99.85 1.47 104 2860617 31.88 66872 SAMN32359437 SRR22859379 India PRJNA914873 SRP414396 NCBI Kharnaior P, Tamang JP. Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics. Int J Food Microbiol. 2023 Dec 16;407:110417. doi: 10.1016/j.ijfoodmicro.2023.110417. KharnaiorP_2023__SRR22859379__bin.2 KharnaiorP_2023__SRR22859379__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Mammaliicoccus Mammaliicoccus lentus peha peha Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 days KharnaiorP_2023__SRR22859379__bin.3 90.99 0.29 154 1504578 38.27 16296 SAMN32359437 SRR22859379 India PRJNA914873 SRP414396 NCBI Kharnaior P, Tamang JP. Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics. Int J Food Microbiol. 2023 Dec 16;407:110417. doi: 10.1016/j.ijfoodmicro.2023.110417. YulandiA_2020__SRS6115052__bin.21 KharnaiorP_2023__SRR22859379__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella paramesenteroides peha peha Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 days KharnaiorP_2023__SRR22859379__bin.5 94.4 0.94 113 2355474 38.44 40975 SAMN32359437 SRR22859379 India PRJNA914873 SRP414396 NCBI Kharnaior P, Tamang JP. Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics. Int J Food Microbiol. 2023 Dec 16;407:110417. doi: 10.1016/j.ijfoodmicro.2023.110417. ODFM-BA-A-0139-001_Enterococcus_lactis_CICC_24101 MAG_125 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B lactis peha peha Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 days KharnaiorP_2023__SRR22859379__bin.7 57.26 0.79 225 1305415 46.43 6335 SAMN32359437 SRR22859379 India PRJNA914873 SRP414396 NCBI Kharnaior P, Tamang JP. Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics. Int J Food Microbiol. 2023 Dec 16;407:110417. doi: 10.1016/j.ijfoodmicro.2023.110417. MotaGutierrezJ_2021__SRR11602150__bin.9 KharnaiorP_2023__SRR22859379__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis peha peha Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 days KharnaiorP_2023__SRR22859379__bin.8 99.96 0.01 43 1589565 37.22 59318 SAMN32359437 SRR22859379 India PRJNA914873 SRP414396 NCBI Kharnaior P, Tamang JP. Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics. Int J Food Microbiol. 2023 Dec 16;407:110417. doi: 10.1016/j.ijfoodmicro.2023.110417. KharnaiorP_2023__SRR22859379__bin.8 KharnaiorP_2023__SRR22859379__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus peha peha Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 days KharnaiorP_2023__SRR22859379__bin.9 72.17 0.96 142 1516426 38.08 14570 SAMN32359437 SRR22859379 India PRJNA914873 SRP414396 NCBI Kharnaior P, Tamang JP. Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics. Int J Food Microbiol. 2023 Dec 16;407:110417. doi: 10.1016/j.ijfoodmicro.2023.110417. LeechJ_xxxx__AF57__bin.8 KharnaiorP_2023__SRR22859379__bin.9 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus_A Vagococcus A lutrae peha peha Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 days KharnaiorP_2023__SRR22859378__bin.11 58.07 1.58 243 1450660 41.32 7001 SAMN32359438 SRR22859378 India PRJNA914873 SRP414396 NCBI Kharnaior P, Tamang JP. Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics. Int J Food Microbiol. 2023 Dec 16;407:110417. doi: 10.1016/j.ijfoodmicro.2023.110417. KumarJ_2019__SRS4562503__bin.9 KharnaiorP_2023__SRR22859378__bin.11 Bacillota;Bacilli;Staphylococcales;Salinicoccaceae;Jeotgalicoccus Jeotgalicoccus nanhaiensis peron namsing peron_namsing Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 days KharnaiorP_2023__SRR22859378__bin.15 93.53 2.12 513 3409579 72.64 9323 SAMN32359438 SRR22859378 India PRJNA914873 SRP414396 NCBI Kharnaior P, Tamang JP. Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics. Int J Food Microbiol. 2023 Dec 16;407:110417. doi: 10.1016/j.ijfoodmicro.2023.110417. KharnaiorP_2023__SRR22859377__bin.19 KharnaiorP_2023__SRR22859378__bin.15 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium conglomeratum peron namsing peron_namsing Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 days KharnaiorP_2023__SRR22859378__bin.20 99.99 2.01 36 2645051 32.36 145296 SAMN32359438 SRR22859378 India PRJNA914873 SRP414396 NCBI Kharnaior P, Tamang JP. Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics. Int J Food Microbiol. 2023 Dec 16;407:110417. doi: 10.1016/j.ijfoodmicro.2023.110417. KharnaiorP_2023__SRR22859377__bin.9 KharnaiorP_2023__SRR22859377__bin.9 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus Vagococcus fluvialis peron namsing peron_namsing Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 days KharnaiorP_2023__SRR22859378__bin.22 92.94 1.96 394 3285047 64.94 12882 SAMN32359438 SRR22859378 India PRJNA914873 SRP414396 NCBI Kharnaior P, Tamang JP. Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics. Int J Food Microbiol. 2023 Dec 16;407:110417. doi: 10.1016/j.ijfoodmicro.2023.110417. KharnaiorP_2023__SRR22859377__bin.11 KharnaiorP_2023__SRR22859378__bin.22 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium permense peron namsing peron_namsing Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 days KharnaiorP_2023__SRR22859378__bin.23 79.05 3.03 281 2693921 43.21 13028 SAMN32359438 SRR22859378 India PRJNA914873 SRP414396 NCBI Kharnaior P, Tamang JP. Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics. Int J Food Microbiol. 2023 Dec 16;407:110417. doi: 10.1016/j.ijfoodmicro.2023.110417. MAG_45 KharnaiorP_2023__SRR22859378__bin.23 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_D Enterococcus D casseliflavus peron namsing peron_namsing Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 days KharnaiorP_2023__SRR22859378__bin.24 79.11 2.88 97 2015999 38.07 34107 SAMN32359438 SRR22859378 India PRJNA914873 SRP414396 NCBI Kharnaior P, Tamang JP. Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics. Int J Food Microbiol. 2023 Dec 16;407:110417. doi: 10.1016/j.ijfoodmicro.2023.110417. MASTER_WP4_CSIC_1__P2235_73323__bin.9 KharnaiorP_2023__SRR22859377__bin.6 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis peron namsing peron_namsing Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 days KharnaiorP_2023__SRR22859378__bin.4 72.79 0.62 383 2292172 42.19 7088 SAMN32359438 SRR22859378 India PRJNA914873 SRP414396 NCBI Kharnaior P, Tamang JP. Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics. Int J Food Microbiol. 2023 Dec 16;407:110417. doi: 10.1016/j.ijfoodmicro.2023.110417. KharnaiorP_2023__SRR22859377__bin.10 KharnaiorP_2023__SRR22859377__bin.10 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_D Enterococcus D sp001297065 peron namsing peron_namsing Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 days KharnaiorP_2023__SRR22859377__bin.10 87.3 1.14 139 2699659 42.22 31573 SAMN32359439 SRR22859377 India PRJNA914873 SRP414396 NCBI Kharnaior P, Tamang JP. Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics. Int J Food Microbiol. 2023 Dec 16;407:110417. doi: 10.1016/j.ijfoodmicro.2023.110417. KharnaiorP_2023__SRR22859377__bin.10 KharnaiorP_2023__SRR22859377__bin.10 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_D Enterococcus D sp001297065 perunyaan perunyaan Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 days KharnaiorP_2023__SRR22859377__bin.11 88.33 0.34 333 3173088 64.96 14616 SAMN32359439 SRR22859377 India PRJNA914873 SRP414396 NCBI Kharnaior P, Tamang JP. Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics. Int J Food Microbiol. 2023 Dec 16;407:110417. doi: 10.1016/j.ijfoodmicro.2023.110417. KharnaiorP_2023__SRR22859377__bin.11 KharnaiorP_2023__SRR22859377__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium permense perunyaan perunyaan Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 days KharnaiorP_2023__SRR22859377__bin.12 52.85 0.73 144 1595482 43.91 16305 SAMN32359439 SRR22859377 India PRJNA914873 SRP414396 NCBI Kharnaior P, Tamang JP. Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics. Int J Food Microbiol. 2023 Dec 16;407:110417. doi: 10.1016/j.ijfoodmicro.2023.110417. MAG_45 KharnaiorP_2023__SRR22859378__bin.23 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_D Enterococcus D casseliflavus perunyaan perunyaan Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 days KharnaiorP_2023__SRR22859377__bin.13 88.44 4.44 180 2384599 38.61 25291 SAMN32359439 SRR22859377 India PRJNA914873 SRP414396 NCBI Kharnaior P, Tamang JP. Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics. Int J Food Microbiol. 2023 Dec 16;407:110417. doi: 10.1016/j.ijfoodmicro.2023.110417. ODFM-BA-A-0139-001_Enterococcus_lactis_CICC_24101 MAG_125 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B lactis perunyaan perunyaan Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 days KharnaiorP_2023__SRR22859377__bin.14 66.57 0.67 510 2456446 46.61 5473 SAMN32359439 SRR22859377 India PRJNA914873 SRP414396 NCBI Kharnaior P, Tamang JP. Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics. Int J Food Microbiol. 2023 Dec 16;407:110417. doi: 10.1016/j.ijfoodmicro.2023.110417. ODFM-BA-A-0009-005_Bacillus_velezensis_YJ11-1-4 KharnaiorP_2023__SRR22859377__bin.14 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus velezensis perunyaan perunyaan Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 days KharnaiorP_2023__SRR22859377__bin.19 99.76 1.73 544 3441634 72.41 8854 SAMN32359439 SRR22859377 India PRJNA914873 SRP414396 NCBI Kharnaior P, Tamang JP. Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics. Int J Food Microbiol. 2023 Dec 16;407:110417. doi: 10.1016/j.ijfoodmicro.2023.110417. KharnaiorP_2023__SRR22859377__bin.19 KharnaiorP_2023__SRR22859377__bin.19 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium conglomeratum perunyaan perunyaan Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 days KharnaiorP_2023__SRR22859377__bin.2 84.07 2.33 484 4116115 53.59 10719 SAMN32359439 SRR22859377 India PRJNA914873 SRP414396 NCBI Kharnaior P, Tamang JP. Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics. Int J Food Microbiol. 2023 Dec 16;407:110417. doi: 10.1016/j.ijfoodmicro.2023.110417. KharnaiorP_2023__SRR22859377__bin.2 KharnaiorP_2023__SRR22859377__bin.2 Pseudomonadota;Alphaproteobacteria;Rhizobiales;Rhizobiaceae;Brucella Brucella pseudogrignonensis perunyaan perunyaan Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 days KharnaiorP_2023__SRR22859377__bin.20 98.48 0.82 55 2514714 33.03 81052 SAMN32359439 SRR22859377 India PRJNA914873 SRP414396 NCBI Kharnaior P, Tamang JP. Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics. Int J Food Microbiol. 2023 Dec 16;407:110417. doi: 10.1016/j.ijfoodmicro.2023.110417. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 KharnaiorP_2023__SRR22859377__bin.20 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus perunyaan perunyaan Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 days KharnaiorP_2023__SRR22859377__bin.6 93.59 0.73 195 2573072 37.66 20060 SAMN32359439 SRR22859377 India PRJNA914873 SRP414396 NCBI Kharnaior P, Tamang JP. Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics. Int J Food Microbiol. 2023 Dec 16;407:110417. doi: 10.1016/j.ijfoodmicro.2023.110417. MASTER_WP4_CSIC_1__P2235_73323__bin.9 KharnaiorP_2023__SRR22859377__bin.6 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis perunyaan perunyaan Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 days KharnaiorP_2023__SRR22859377__bin.9 100 0.39 46 2595797 32.36 131801 SAMN32359439 SRR22859377 India PRJNA914873 SRP414396 NCBI Kharnaior P, Tamang JP. Microbiome and metabolome in home-made fermented soybean foods of India revealed by metagenome-assembled genomes and metabolomics. Int J Food Microbiol. 2023 Dec 16;407:110417. doi: 10.1016/j.ijfoodmicro.2023.110417. KharnaiorP_2023__SRR22859377__bin.9 KharnaiorP_2023__SRR22859377__bin.9 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus Vagococcus fluvialis perunyaan perunyaan Plant Legumes soybean soybean paste semi-solid none lactic mesophilic 1-3 days LeechJ_2020__ERS3967704__bin.2 79.26634769 0 293 4899174 53.11 27264 ERS3967704 ERR4757819 China PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. AlvarezOrdonezA_xxxx__Q04-21__bin.16 LeechJ_2020__ERS3967704__bin.2 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Rahnella Rahnella inusitata pickle mixed vegetables picked_vegetables Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967704__bin.1 65.23736754 1.31515444 682 2020766 40.15 3078 ERS3967704 ERR4757819 China PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. FalardeauJ_2023__SRR20811282__bin.3 We2_bin.full.21 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Pseudoalteromonas Pseudoalteromonas nigrifaciens pickle mixed vegetables picked_vegetables Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003946115.1_ASM394611v1_genomic 99.02 1.31 30 2738087 58 218215 GCF_003946115.1 GCF_003946115.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946115.1_ASM394611v1_genomic GCF_003946115.1_ASM394611v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus daqingensis pickle mixed vegetables pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003946175.1_ASM394617v1_genomic 99.48 0.52 55 2560295 53.02 105481 GCF_003946175.1 GCF_003946175.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946175.1_ASM394617v1_genomic GCF_003946175.1_ASM394617v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus suibinensis pickle mixed vegetables pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003946205.1_ASM394620v1_genomic 99.48 1.64 49 2301243 35.56 101148 GCF_003946205.1 GCF_003946205.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946205.1_ASM394620v1_genomic GCF_003946205.1_ASM394620v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus keshanensis pickle mixed vegetables pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003946215.1_ASM394621v1_genomic 99.48 1.05 102 2316746 42.48 56694 GCF_003946215.1 GCF_003946215.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946215.1_ASM394621v1_genomic GCF_003946215.1_ASM394621v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lapidilactobacillus Lapidilactobacillus mulanensis pickle mixed vegetables pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003946405.1_ASM394640v1_genomic 98.69 0.52 73 2558704 55.44 56952 GCF_003946405.1 GCF_003946405.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946405.1_ASM394640v1_genomic GCF_003946405.1_ASM394640v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus yichunensis pickle mixed vegetables pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003946465.1_ASM394646v1_genomic 99.21 0.52 69 2501322 55.47 60983 GCF_003946465.1 GCF_003946465.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946465.1_ASM394646v1_genomic GCF_003946465.1_ASM394646v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus hegangensis pickle mixed vegetables pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003946505.1_ASM394650v1_genomic 99.48 0.59 28 2348649 36.62 245255 GCF_003946505.1 GCF_003946505.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946505.1_ASM394650v1_genomic GCF_003946505.1_ASM394650v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus mishanensis pickle mixed vegetables pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003946515.1_ASM394651v1_genomic 99.48 1.31 77 2644863 39.36 81392 GCF_003946515.1 GCF_003946515.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946515.1_ASM394651v1_genomic GCF_003946515.1_ASM394651v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus zhongbaensis pickle mixed vegetables pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003946555.1_ASM394655v1_genomic 99.48 0 54 2632694 36.71 90527 GCF_003946555.1 GCF_003946555.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946555.1_ASM394655v1_genomic GCF_003946555.1_ASM394655v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus hulinensis pickle mixed vegetables pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003946575.1_ASM394657v1_genomic 99.48 0 41 2707861 36.52 110832 GCF_003946575.1 GCF_003946575.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946575.1_ASM394657v1_genomic GCF_003946575.1_ASM394657v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus jidongensis pickle mixed vegetables pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003946605.1_ASM394660v1_genomic 99.48 1.05 17 2237367 34.57 405241 GCF_003946605.1 GCF_003946605.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946605.1_ASM394660v1_genomic GCF_003946605.1_ASM394660v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus baiquanensis pickle mixed vegetables pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003946625.1_ASM394662v1_genomic 99.48 1.64 37 2272157 36.16 113031 GCF_003946625.1 GCF_003946625.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946625.1_ASM394662v1_genomic GCF_003946625.1_ASM394662v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus kedongensis pickle mixed vegetables pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003946645.1_ASM394664v1_genomic 98.25 0.63 33 2533661 41.74 149975 GCF_003946645.1 GCF_003946645.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946645.1_ASM394664v1_genomic GCF_003946645.1_ASM394664v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lapidilactobacillus Lapidilactobacillus wuchangensis pickle mixed vegetables pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003946655.1_ASM394665v1_genomic 99.3 0 50 2639237 49.01 94880 GCF_003946655.1 GCF_003946655.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946655.1_ASM394665v1_genomic GCF_003946655.1_ASM394665v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lapidilactobacillus Lapidilactobacillus achengensis pickle mixed vegetables pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003946675.1_ASM394667v1_genomic 97.99 0.52 77 2393386 40.81 51655 GCF_003946675.1 GCF_003946675.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946675.1_ASM394667v1_genomic GCF_003946675.1_ASM394667v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lapidilactobacillus Lapidilactobacillus gannanensis pickle mixed vegetables pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003946695.1_ASM394669v1_genomic 99.35 1.57 63 2430829 40.11 87739 GCF_003946695.1 GCF_003946695.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946695.1_ASM394669v1_genomic GCF_003946695.1_ASM394669v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lapidilactobacillus Lapidilactobacillus bayanensis pickle mixed vegetables pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003946725.1_ASM394672v1_genomic 99.21 0 41 2825702 39.96 122398 GCF_003946725.1 GCF_003946725.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946725.1_ASM394672v1_genomic GCF_003946725.1_ASM394672v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Agrilactobacillus Agrilactobacillus yilanensis pickle mixed vegetables pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_004010095.1_ASM401009v1_genomic 96.34 1.57 61 2355647 52.68 55988 GCF_004010095.1 GCF_004010095.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_004010095.1_ASM401009v1_genomic GCF_004010095.1_ASM401009v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus hulanensis pickle mixed vegetables pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_005404815.1_ASM540481v1_genomic 99.48 1.05 57 3019850 36.41 123888 GCF_005404815.1 GCF_005404815.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_005404815.1_ASM540481v1_genomic GCF_005404815.1_ASM540481v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus huachuanensis pickle mixed vegetables pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_005404945.1_ASM540494v1_genomic 99.38 1.23 59 2895555 44.17 94547 GCF_005404945.1 GCF_005404945.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_005404945.1_ASM540494v1_genomic GCF_005404945.1_ASM540494v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus pingfangensis pickle mixed vegetables pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_005405005.1_ASM540500v1_genomic 99.38 1.23 19 2632925 43.67 275013 GCF_005405005.1 GCF_005405005.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_005405005.1_ASM540500v1_genomic GCF_005405005.1_ASM540500v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus daoliensis pickle mixed vegetables pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_005405065.1_ASM540506v1_genomic 99.07 1.23 39 2901270 44.32 155556 GCF_005405065.1 GCF_005405065.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_005405065.1_ASM540506v1_genomic GCF_005405065.1_ASM540506v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus nangangensis pickle mixed vegetables pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_005405085.1_ASM540508v1_genomic 85.19 0.82 46 2851257 43.97 111673 GCF_005405085.1 GCF_005405085.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_005405085.1_ASM540508v1_genomic GCF_005405085.1_ASM540508v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus daowaiensis pickle mixed vegetables pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_005405105.1_ASM540510v1_genomic 99.02 2.62 71 3107413 44.73 67560 GCF_005405105.1 GCF_005405105.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_005405105.1_ASM540510v1_genomic GCF_005405105.1_ASM540510v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus dongliensis pickle mixed vegetables pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_005405125.1_ASM540512v1_genomic 99.02 2.62 50 3030001 44.42 107564 GCF_005405125.1 GCF_005405125.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_005405125.1_ASM540512v1_genomic GCF_005405125.1_ASM540512v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus songbeiensis pickle mixed vegetables pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_005405145.1_ASM540514v1_genomic 66.85 0 45 1751927 38.03 70854 GCF_005405145.1 GCF_005405145.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_005405145.1_ASM540514v1_genomic GCF_005405145.1_ASM540514v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus kaifaensis pickle mixed vegetables pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_005405165.1_ASM540516v1_genomic 99.46 1.9 85 2841377 43.47 80161 GCF_005405165.1 GCF_005405165.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_005405165.1_ASM540516v1_genomic GCF_005405165.1_ASM540516v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus binensis pickle mixed vegetables pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_005405385.1_ASM540538v1_genomic 99.07 1.34 13 3289607 43.07 583835 GCF_005405385.1 GCF_005405385.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_005405385.1_ASM540538v1_genomic GCF_005405385.1_ASM540538v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus mudanjiangensis pickle mixed vegetables pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_016861655.1_ASM1686165v1_genomic 99.38 0 24 3029779 50.5 271682 GCF_016861655.1 GCF_016861655.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_016861655.1_ASM1686165v1_genomic GCF_016861655.1_ASM1686165v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus lanxiensis pickle mixed vegetables pickle Plant Vegetables_Aromatics mixed vegetables pickled vegetables solid none lactic mesophilic 1 day - 3 months QuigleyL_2016__ERR752914__bin.5 94.07 0.85 287 1714816 69.1 7765 SAMEA3232874 ERR752914 Italy PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. DeFilippisF_xxxx__DF_58__bin.5 QuigleyL_2016__ERR752914__bin.5 Deinococcota;Deinococci;Deinococcales;Thermaceae;Thermus Thermus parvatiensis cheese continental pink pink_continental_type_cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months QuigleyL_2016__ERR752918__bin.3 98.79 0 95 2516779 67.38 42450 SAMEA3232878 ERR752918 Italy PRJEB6952 ERP006630 NCBI Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. mSystems. 2016 Jun 14;1(3):e00023-16. doi: 10.1128/mSystems.00023-16. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii cheese continental pink pink_continental_type_cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months EBC_111.13 88.54 0.27 126 3018863 56.56 37732 SAMN40633105 SRS20892342 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 DeFilippisF_xxxx__DF_114__bin.22 MASTER_WP4_UNINA_1__FO005_71775__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter bergerei cheese pink pink_small_cheese_reiss Animal Dairy milk cheese solid low lactic mesophilic 1-3 months LeechJ_xxxx__AF17__bin.4 74.48275862 1.724137931 59 1263705 43.56 42811 SAMN39472436 SRR27593234 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_245__bin.2 LeechJ_xxxx__AF17__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis pito pito Plant Grain millet beverage liquid low lactic mesophilic 3-7 days LeechJ_xxxx__AF17__bin.3 98.54613845 1.020171958 471 4853921 58.13 15840 SAMN39472436 SRR27593234 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_19 MAG_19 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella pneumoniae pito pito Plant Grain millet beverage liquid low lactic mesophilic 3-7 days LeechJ_xxxx__AF17__bin.5 95.36523356 2.247983871 841 8062938 65.2 14206 SAMN39472436 SRR27593234 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF17__bin.5 LeechJ_xxxx__AF17__bin.5 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Paraburkholderia Paraburkholderia tropica pito pito Plant Grain millet beverage liquid low lactic mesophilic 3-7 days LeechJ_xxxx__AF17__bin.1 98.9 0 181 11914035 44.52 102867 SAMN39472436 SRR27593234 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF17__bin.1 LeechJ_xxxx__AF17__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Metschnikowiaceae;Clavispora Clavispora lusitaniae pito pito Plant Grain millet beverage liquid low lactic mesophilic 3-7 days LeechJ_xxxx__AF17__bin.2 88.7 0.1 1894 32816348 55.34 29392 SAMN39472436 SRR27593234 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF17__bin.2 LeechJ_xxxx__AF17__bin.2 Ascomycota;Sordariomycetes;Coniochaetales;Coniochaetaceae;Coniochaeta unknown pito pito Plant Grain millet beverage liquid low lactic mesophilic 3-7 days LeechJ_xxxx__AF28__bin.1 93.8 1.7 1272 10760707 38.22 11833 SAMN39472447 SRR27593222 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae pito pito Plant Grain millet beverage liquid low lactic mesophilic 3-7 days LeechJ_xxxx__AF32__bin.1 93.7 1.6 1140 10943809 38.24 13966 SAMN39472451 SRR27593217 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae pito pito Plant Grain millet beverage liquid low lactic mesophilic 3-7 days GCF_003946015.1_ASM394601v1_genomic 98.95 0 73 2536116 34.95 64521 GCF_003946015.1 GCF_003946015.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946015.1_ASM394601v1_genomic GCF_003946015.1_ASM394601v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus insicii salami pork pork_salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks EBC_086.5 99.44 1.76 79 2377866 38.05 176627 SAMN40633080 SRS20892312 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_086.5 EBC_086.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc sp040838325 kimchi potato potato_kimchi Plant Roots_Tubers potato pickled vegetables solid low lactic mesophilic 1 day - 3 months GCF_001703515.1_ASM170351v1_genomic 99.45 0 2 2578375 36.39 2523525 GCF_001703515.1 GCF_001703515.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001703515.1_ASM170351v1_genomic GCF_001703515.1_ASM170351v1_genomic Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta salami chicken poultry_meat Animal Meat chicken sausage solid none lactic mesophilic 2-4 weeks GCF_001434295.1_ASM143429v1_genomic 99.48 0.59 58 2371581 38.26 106879 GCF_001434295.1 GCF_001434295.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis salami chicken poultry_salami Animal Meat chicken sausage solid none lactic mesophilic 2-4 weeks LopezSanchezR_2023__SRR13708565__bin.1 99.03 1.14 97 1913096 40.11 37346 SAMN15650273 SRR13708565 Mexico PRJNA648868 SRP275821 NCBI López-Sánchez R, Hernández-Oaxaca D, Escobar-Zepeda A, Ramos Cerrillo B, López-Munguía A, Segovia L. Analysing the dynamics of the bacterial community in pozol, a Mexican fermented corn dough. Microbiology (Reading). 2023 Jul;169(7):001355. doi: 10.1099/mic.0.001355. GCF_001885995.1_ASM188599v1_genomic LopezSanchezR_2023__SRR13708565__bin.1 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_G Enterococcus G italicus pozol pozol Plant Grain corn beverage liquid low lactic mesophilic 1-15 days LopezSanchezR_2023__SRR13708565__bin.10 99.53 1.56 202 2025177 37.17 21501 SAMN15650273 SRR13708565 Mexico PRJNA648868 SRP275821 NCBI López-Sánchez R, Hernández-Oaxaca D, Escobar-Zepeda A, Ramos Cerrillo B, López-Munguía A, Segovia L. Analysing the dynamics of the bacterial community in pozol, a Mexican fermented corn dough. Microbiology (Reading). 2023 Jul;169(7):001355. doi: 10.1099/mic.0.001355. WalshAM_2017__ERS1739834__bin.1 LopezSanchezR_2023__SRR13708565__bin.10 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius pozol pozol Plant Grain corn beverage liquid low lactic mesophilic 1-15 days LopezSanchezR_2023__SRR13708565__bin.11 74.77 2.1 350 1384365 42.93 4463 SAMN15650273 SRR13708565 Mexico PRJNA648868 SRP275821 NCBI López-Sánchez R, Hernández-Oaxaca D, Escobar-Zepeda A, Ramos Cerrillo B, López-Munguía A, Segovia L. Analysing the dynamics of the bacterial community in pozol, a Mexican fermented corn dough. Microbiology (Reading). 2023 Jul;169(7):001355. doi: 10.1099/mic.0.001355. LopezSanchezR_2023__SRR13708567__bin.4 LopezSanchezR_2023__SRR13708567__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus ferus pozol pozol Plant Grain corn beverage liquid low lactic mesophilic 1-15 days LopezSanchezR_2023__SRR13708565__bin.2 93.74 1.15 158 1759082 39.68 18178 SAMN15650273 SRR13708565 Mexico PRJNA648868 SRP275821 NCBI López-Sánchez R, Hernández-Oaxaca D, Escobar-Zepeda A, Ramos Cerrillo B, López-Munguía A, Segovia L. Analysing the dynamics of the bacterial community in pozol, a Mexican fermented corn dough. Microbiology (Reading). 2023 Jul;169(7):001355. doi: 10.1099/mic.0.001355. CM_UNINA_FFOOD__FFOOD_270__bin.3 LopezSanchezR_2023__SRR13708566__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus suis AA pozol pozol Plant Grain corn beverage liquid low lactic mesophilic 1-15 days LopezSanchezR_2023__SRR13708565__bin.3 77.82 3.06 257 1443887 50.91 8012 SAMN15650273 SRR13708565 Mexico PRJNA648868 SRP275821 NCBI López-Sánchez R, Hernández-Oaxaca D, Escobar-Zepeda A, Ramos Cerrillo B, López-Munguía A, Segovia L. Analysing the dynamics of the bacterial community in pozol, a Mexican fermented corn dough. Microbiology (Reading). 2023 Jul;169(7):001355. doi: 10.1099/mic.0.001355. GCF_006740305.1_ASM674030v1_genomic LopezSanchezR_2023__SRR13708565__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii pozol pozol Plant Grain corn beverage liquid low lactic mesophilic 1-15 days LopezSanchezR_2023__SRR13708565__bin.4 86.43 0.68 149 1636115 53.3 17040 SAMN15650273 SRR13708565 Mexico PRJNA648868 SRP275821 NCBI López-Sánchez R, Hernández-Oaxaca D, Escobar-Zepeda A, Ramos Cerrillo B, López-Munguía A, Segovia L. Analysing the dynamics of the bacterial community in pozol, a Mexican fermented corn dough. Microbiology (Reading). 2023 Jul;169(7):001355. doi: 10.1099/mic.0.001355. FontanaF_2023__SRR20746839__bin.4 FontanaF_2023__SRR20746839__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum pozol pozol Plant Grain corn beverage liquid low lactic mesophilic 1-15 days LopezSanchezR_2023__SRR13708566__bin.1 90.03 1.88 116 1543455 37.72 19767 SAMN15650272 SRR13708566 Mexico PRJNA648868 SRP275821 NCBI López-Sánchez R, Hernández-Oaxaca D, Escobar-Zepeda A, Ramos Cerrillo B, López-Munguía A, Segovia L. Analysing the dynamics of the bacterial community in pozol, a Mexican fermented corn dough. Microbiology (Reading). 2023 Jul;169(7):001355. doi: 10.1099/mic.0.001355. WalshAM_2017__ERS1739834__bin.1 LopezSanchezR_2023__SRR13708565__bin.10 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius pozol pozol Plant Grain corn beverage liquid low lactic mesophilic 1-15 days LopezSanchezR_2023__SRR13708566__bin.11 93.25 0.44 147 1704943 39.75 15440 SAMN15650272 SRR13708566 Mexico PRJNA648868 SRP275821 NCBI López-Sánchez R, Hernández-Oaxaca D, Escobar-Zepeda A, Ramos Cerrillo B, López-Munguía A, Segovia L. Analysing the dynamics of the bacterial community in pozol, a Mexican fermented corn dough. Microbiology (Reading). 2023 Jul;169(7):001355. doi: 10.1099/mic.0.001355. CM_UNINA_FFOOD__FFOOD_270__bin.3 LopezSanchezR_2023__SRR13708566__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus suis AA pozol pozol Plant Grain corn beverage liquid low lactic mesophilic 1-15 days LopezSanchezR_2023__SRR13708566__bin.12 70.06 0.02 259 1166388 53.72 5552 SAMN15650272 SRR13708566 Mexico PRJNA648868 SRP275821 NCBI López-Sánchez R, Hernández-Oaxaca D, Escobar-Zepeda A, Ramos Cerrillo B, López-Munguía A, Segovia L. Analysing the dynamics of the bacterial community in pozol, a Mexican fermented corn dough. Microbiology (Reading). 2023 Jul;169(7):001355. doi: 10.1099/mic.0.001355. FontanaF_2023__SRR20746839__bin.4 LopezSanchezR_2023__SRR13708566__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum pozol pozol Plant Grain corn beverage liquid low lactic mesophilic 1-15 days LopezSanchezR_2023__SRR13708566__bin.14 81.96 1.98 101 1790212 39.54 39967 SAMN15650272 SRR13708566 Mexico PRJNA648868 SRP275821 NCBI López-Sánchez R, Hernández-Oaxaca D, Escobar-Zepeda A, Ramos Cerrillo B, López-Munguía A, Segovia L. Analysing the dynamics of the bacterial community in pozol, a Mexican fermented corn dough. Microbiology (Reading). 2023 Jul;169(7):001355. doi: 10.1099/mic.0.001355. GCF_001885995.1_ASM188599v1_genomic LopezSanchezR_2023__SRR13708565__bin.1 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_G Enterococcus G italicus pozol pozol Plant Grain corn beverage liquid low lactic mesophilic 1-15 days LopezSanchezR_2023__SRR13708566__bin.3 84.92 1.81 430 2174734 48.35 6293 SAMN15650272 SRR13708566 Mexico PRJNA648868 SRP275821 NCBI López-Sánchez R, Hernández-Oaxaca D, Escobar-Zepeda A, Ramos Cerrillo B, López-Munguía A, Segovia L. Analysing the dynamics of the bacterial community in pozol, a Mexican fermented corn dough. Microbiology (Reading). 2023 Jul;169(7):001355. doi: 10.1099/mic.0.001355. Nixt_bin.2 LopezSanchezR_2023__SRR13708566__bin.3 Bacillota;Bacilli;Exiguobacteriales;Exiguobacteriaceae;Exiguobacterium Exiguobacterium sp902362975 pozol pozol Plant Grain corn beverage liquid low lactic mesophilic 1-15 days LopezSanchezR_2023__SRR13708566__bin.9 93.42 0.33 99 1614857 43.04 24945 SAMN15650272 SRR13708566 Mexico PRJNA648868 SRP275821 NCBI López-Sánchez R, Hernández-Oaxaca D, Escobar-Zepeda A, Ramos Cerrillo B, López-Munguía A, Segovia L. Analysing the dynamics of the bacterial community in pozol, a Mexican fermented corn dough. Microbiology (Reading). 2023 Jul;169(7):001355. doi: 10.1099/mic.0.001355. LopezSanchezR_2023__SRR13708567__bin.4 LopezSanchezR_2023__SRR13708567__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus ferus pozol pozol Plant Grain corn beverage liquid low lactic mesophilic 1-15 days LopezSanchezR_2023__SRR13708567__bin.1 88.41 0.33 131 1638815 37.69 20871 SAMN15650267 SRR13708567 Mexico PRJNA648868 SRP275821 NCBI López-Sánchez R, Hernández-Oaxaca D, Escobar-Zepeda A, Ramos Cerrillo B, López-Munguía A, Segovia L. Analysing the dynamics of the bacterial community in pozol, a Mexican fermented corn dough. Microbiology (Reading). 2023 Jul;169(7):001355. doi: 10.1099/mic.0.001355. WalshAM_2017__ERS1739834__bin.1 LopezSanchezR_2023__SRR13708565__bin.10 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius pozol pozol Plant Grain corn beverage liquid low lactic mesophilic 1-15 days LopezSanchezR_2023__SRR13708567__bin.10 85.02 0.57 161 1637762 39.76 16036 SAMN15650267 SRR13708567 Mexico PRJNA648868 SRP275821 NCBI López-Sánchez R, Hernández-Oaxaca D, Escobar-Zepeda A, Ramos Cerrillo B, López-Munguía A, Segovia L. Analysing the dynamics of the bacterial community in pozol, a Mexican fermented corn dough. Microbiology (Reading). 2023 Jul;169(7):001355. doi: 10.1099/mic.0.001355. CM_UNINA_FFOOD__FFOOD_270__bin.3 LopezSanchezR_2023__SRR13708566__bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus suis AA pozol pozol Plant Grain corn beverage liquid low lactic mesophilic 1-15 days LopezSanchezR_2023__SRR13708567__bin.11 90.57 1.88 128 1494768 44.71 19683 SAMN15650267 SRR13708567 Mexico PRJNA648868 SRP275821 NCBI López-Sánchez R, Hernández-Oaxaca D, Escobar-Zepeda A, Ramos Cerrillo B, López-Munguía A, Segovia L. Analysing the dynamics of the bacterial community in pozol, a Mexican fermented corn dough. Microbiology (Reading). 2023 Jul;169(7):001355. doi: 10.1099/mic.0.001355. LeechJ_xxxx__AF81__bin.1 LopezSanchezR_2023__SRR13708567__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc sp900554745 pozol pozol Plant Grain corn beverage liquid low lactic mesophilic 1-15 days LopezSanchezR_2023__SRR13708567__bin.13 74.78 2.02 552 2286160 42.88 4729 SAMN15650267 SRR13708567 Mexico PRJNA648868 SRP275821 NCBI López-Sánchez R, Hernández-Oaxaca D, Escobar-Zepeda A, Ramos Cerrillo B, López-Munguía A, Segovia L. Analysing the dynamics of the bacterial community in pozol, a Mexican fermented corn dough. Microbiology (Reading). 2023 Jul;169(7):001355. doi: 10.1099/mic.0.001355. LopezSanchezR_2023__SRR13708567__bin.13 LopezSanchezR_2023__SRR13708567__bin.13 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter sp013417555 pozol pozol Plant Grain corn beverage liquid low lactic mesophilic 1-15 days LopezSanchezR_2023__SRR13708567__bin.14 77.09 1.18 342 1460361 44.97 5064 SAMN15650267 SRR13708567 Mexico PRJNA648868 SRP275821 NCBI López-Sánchez R, Hernández-Oaxaca D, Escobar-Zepeda A, Ramos Cerrillo B, López-Munguía A, Segovia L. Analysing the dynamics of the bacterial community in pozol, a Mexican fermented corn dough. Microbiology (Reading). 2023 Jul;169(7):001355. doi: 10.1099/mic.0.001355. GCF_004771075.1_ASM477107v1_genomic LopezSanchezR_2023__SRR13708567__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella confusa pozol pozol Plant Grain corn beverage liquid low lactic mesophilic 1-15 days LopezSanchezR_2023__SRR13708567__bin.2 96.46 0.9 94 2021374 39.84 47442 SAMN15650267 SRR13708567 Mexico PRJNA648868 SRP275821 NCBI López-Sánchez R, Hernández-Oaxaca D, Escobar-Zepeda A, Ramos Cerrillo B, López-Munguía A, Segovia L. Analysing the dynamics of the bacterial community in pozol, a Mexican fermented corn dough. Microbiology (Reading). 2023 Jul;169(7):001355. doi: 10.1099/mic.0.001355. GCF_001885995.1_ASM188599v1_genomic LopezSanchezR_2023__SRR13708565__bin.1 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_G Enterococcus G italicus pozol pozol Plant Grain corn beverage liquid low lactic mesophilic 1-15 days LopezSanchezR_2023__SRR13708567__bin.3 97.9 1.15 381 2251599 48.29 8182 SAMN15650267 SRR13708567 Mexico PRJNA648868 SRP275821 NCBI López-Sánchez R, Hernández-Oaxaca D, Escobar-Zepeda A, Ramos Cerrillo B, López-Munguía A, Segovia L. Analysing the dynamics of the bacterial community in pozol, a Mexican fermented corn dough. Microbiology (Reading). 2023 Jul;169(7):001355. doi: 10.1099/mic.0.001355. Nixt_bin.2 LopezSanchezR_2023__SRR13708567__bin.3 Bacillota;Bacilli;Exiguobacteriales;Exiguobacteriaceae;Exiguobacterium Exiguobacterium sp902362975 pozol pozol Plant Grain corn beverage liquid low lactic mesophilic 1-15 days LopezSanchezR_2023__SRR13708567__bin.4 94.72 0.48 87 1607650 43.13 33002 SAMN15650267 SRR13708567 Mexico PRJNA648868 SRP275821 NCBI López-Sánchez R, Hernández-Oaxaca D, Escobar-Zepeda A, Ramos Cerrillo B, López-Munguía A, Segovia L. Analysing the dynamics of the bacterial community in pozol, a Mexican fermented corn dough. Microbiology (Reading). 2023 Jul;169(7):001355. doi: 10.1099/mic.0.001355. LopezSanchezR_2023__SRR13708567__bin.4 LopezSanchezR_2023__SRR13708567__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus ferus pozol pozol Plant Grain corn beverage liquid low lactic mesophilic 1-15 days PasolliE_2020__SRS6525470__bin.7 93.82716049 2.777777778 22 2848228 44.85 276521 SAMN14677880 SRR11605263 Italy PRJNA603575 SRP258112 NCBI Pasolli, E., De Filippis, F., Mauriello, I.E., Cumbo, F., Walsh, A.M., Leech, J., Cotter, P.D., Segata, N., and Ercolini, D. (2020). Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat. Commun. 11, 2610. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PasolliE_2020__SRS6525471__bin.1 98.08743169 0 130 3352539 46.43 45229 SAMN14677881 SRR11605262 Italy PRJNA603575 SRP258112 NCBI Pasolli, E., De Filippis, F., Mauriello, I.E., Cumbo, F., Walsh, A.M., Leech, J., Cotter, P.D., Segata, N., and Ercolini, D. (2020). Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat. Commun. 11, 2610. MAG_500 MAG_500 Bacillota;Bacilli;Bacillales_B;Bacillaceae_C;Weizmannia Weizmannia faecalis probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PasolliE_2020__SRS6525471__bin.2 90.6 1.7 1562 10846341 38.15 9406 SAMN14677881 SRR11605262 Italy PRJNA603575 SRP258112 NCBI Pasolli, E., De Filippis, F., Mauriello, I.E., Cumbo, F., Walsh, A.M., Leech, J., Cotter, P.D., Segata, N., and Ercolini, D. (2020). Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat. Commun. 11, 2610. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PasolliE_2020__SRS6525478__bin.7 96.56472407 0.997088792 127 1675870 39.06 21379 SAMN14677882 SRR11605271 Italy PRJNA603575 SRP258112 NCBI Pasolli, E., De Filippis, F., Mauriello, I.E., Cumbo, F., Walsh, A.M., Leech, J., Cotter, P.D., Segata, N., and Ercolini, D. (2020). Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat. Commun. 11, 2610. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PasolliE_2020__SRS6525478__bin.4 87.01298701 0 38 1262067 50.72 68612 SAMN14677882 SRR11605271 Italy PRJNA603575 SRP258112 NCBI Pasolli, E., De Filippis, F., Mauriello, I.E., Cumbo, F., Walsh, A.M., Leech, J., Cotter, P.D., Segata, N., and Ercolini, D. (2020). Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat. Commun. 11, 2610. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PasolliE_2020__SRS6525478__bin.6 55.17241379 0 11 864279 59.93 105266 SAMN14677882 SRR11605271 Italy PRJNA603575 SRP258112 NCBI Pasolli, E., De Filippis, F., Mauriello, I.E., Cumbo, F., Walsh, A.M., Leech, J., Cotter, P.D., Segata, N., and Ercolini, D. (2020). Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat. Commun. 11, 2610. MAG_502 MAG_502 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium animalis probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PasolliE_2020__SRS6525478__bin.9 87.30568674 0.789551358 61 1460065 34.53 32378 SAMN14677882 SRR11605271 Italy PRJNA603575 SRP258112 NCBI Pasolli, E., De Filippis, F., Mauriello, I.E., Cumbo, F., Walsh, A.M., Leech, J., Cotter, P.D., Segata, N., and Ercolini, D. (2020). Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat. Commun. 11, 2610. PatroJN_2016__SRS1044738__bin.12 PatroJN_2016__SRS1044738__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus acidophilus probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PasolliE_2020__SRS6525478__bin.8 91.34408602 4.214029698 373 1877916 59.03 6374 SAMN14677882 SRR11605271 Italy PRJNA603575 SRP258112 NCBI Pasolli, E., De Filippis, F., Mauriello, I.E., Cumbo, F., Walsh, A.M., Leech, J., Cotter, P.D., Segata, N., and Ercolini, D. (2020). Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat. Commun. 11, 2610. PasolliE_2020__SRS6525478__bin.8 PasolliE_2020__SRS6525478__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium breve probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PasolliE_2020__SRS6525479__bin.13 56.89655172 0 6 965097 45.16 288318 SAMN14677883 SRR11605270 Italy PRJNA603575 SRP258112 NCBI Pasolli, E., De Filippis, F., Mauriello, I.E., Cumbo, F., Walsh, A.M., Leech, J., Cotter, P.D., Segata, N., and Ercolini, D. (2020). Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat. Commun. 11, 2610. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PasolliE_2020__SRS6525479__bin.3 72.2826087 0 27 1762748 46.66 92289 SAMN14677883 SRR11605270 Italy PRJNA603575 SRP258112 NCBI Pasolli, E., De Filippis, F., Mauriello, I.E., Cumbo, F., Walsh, A.M., Leech, J., Cotter, P.D., Segata, N., and Ercolini, D. (2020). Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat. Commun. 11, 2610. FontanaF_2023__SRR20746951__bin.4 PatroJN_2016__SRS1044739__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PasolliE_2020__SRS6525479__bin.12 67.24137931 0 8 1329310 34.33 669901 SAMN14677883 SRR11605270 Italy PRJNA603575 SRP258112 NCBI Pasolli, E., De Filippis, F., Mauriello, I.E., Cumbo, F., Walsh, A.M., Leech, J., Cotter, P.D., Segata, N., and Ercolini, D. (2020). Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat. Commun. 11, 2610. PatroJN_2016__SRS1044738__bin.12 PatroJN_2016__SRS1044738__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus acidophilus probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044731__bin.9 98.7654321 2.777777778 43 3036071 44.74 120937 SAMN04009565 SRR2182533; SRR2182534; SRR2182535 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044731__bin.7 94.37172775 0 49 1601266 32.35 49594 SAMN04009565 SRR2182533; SRR2182534; SRR2182535 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. PatroJN_2016__SRS1044731__bin.7 PatroJN_2016__SRS1044731__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus Ligilactobacillus salivarius probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044731__bin.15 59.16293661 0 78 1384210 48.35 24011 SAMN04009565 SRR2182533; SRR2182534; SRR2182535 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. CM_UNINA_FFOOD__FFOOD_415__bin.4 CM_UNINA_FFOOD__FFOOD_415__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus casei probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044731__bin.12 71.87301587 0 14 1165657 60.31 127532 SAMN04009565 SRR2182533; SRR2182534; SRR2182535 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. MAG_502 MAG_502 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium animalis probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044731__bin.4 53.44827586 0 11 1046116 34.16 264606 SAMN04009565 SRR2182533; SRR2182534; SRR2182535 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. PatroJN_2016__SRS1044738__bin.12 PatroJN_2016__SRS1044738__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus acidophilus probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044732__bin.8 99.07407407 3.703703704 50 3020346 44.79 90938 SAMN04009564 SRR2182532; SRR2182557; SRR2182558 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. FalardeauJ_2023__SRR20811279__bin.3 YuY_2022__SRR16950697__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044732__bin.6 50.86206897 0 27 908178 60.23 46878 SAMN04009564 SRR2182532; SRR2182557; SRR2182558 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. PatroJN_2016__SRS1044732__bin.6 PatroJN_2016__SRS1044732__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium longum probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044732__bin.3 96.88940092 0.768049155 63 2041555 62.98 46856 SAMN04009564 SRR2182532; SRR2182557; SRR2182558 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. PatroJN_2016__SRS1044732__bin.3 PatroJN_2016__SRS1044732__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium bifidum probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044735__bin.23 90.21267361 0.677083333 92 1955927 46.32 30648 SAMN04009570 SRR2182549; SRR2182550; SRR2182551 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044735__bin.26 53.40909091 0.189393939 20 1205733 35.48 116698 SAMN04009570 SRR2182549; SRR2182550; SRR2182551 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044735__bin.1 77.43653086 0.543478261 102 2422904 46.37 34683 SAMN04009570 SRR2182549; SRR2182550; SRR2182551 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. FontanaF_2023__SRR20746951__bin.4 FalardeauJ_2023__SRR20811272__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044735__bin.12 59.79938272 0.617283951 38 1776829 44.92 68768 SAMN04009570 SRR2182549; SRR2182550; SRR2182551 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044735__bin.13 79.88505747 0.862068966 56 1450893 32.13 40428 SAMN04009570 SRR2182549; SRR2182550; SRR2182551 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. PatroJN_2016__SRS1044731__bin.7 PatroJN_2016__SRS1044731__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus Ligilactobacillus salivarius probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044735__bin.10 88.73966688 2.364341085 124 1782026 34.59 20939 SAMN04009570 SRR2182549; SRR2182550; SRR2182551 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. DeFilippisF_xxxx__DF_96__bin.12 PatroJN_2016__SRS1044735__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus paragasseri probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044735__bin.11 56.89655172 0 15 935952 34.02 168138 SAMN04009570 SRR2182549; SRR2182550; SRR2182551 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. PatroJN_2016__SRS1044738__bin.12 PatroJN_2016__SRS1044738__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus acidophilus probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044736__bin.2 65.51724138 0 45 1440880 46.99 52786 SAMN04009569 SRR2182546; SRR2182547; SRR2182548 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044736__bin.4 58.62068966 0 27 739845 38.82 35227 SAMN04009569 SRR2182546; SRR2182547; SRR2182548 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. LeechJ_xxxx__AF78__bin.4 PatroJN_2016__SRS1044736__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus reuteri probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044737__bin.1 62.5 0 23 1876510 46.7 121004 SAMN04009568 SRR2182543; SRR2182544; SRR2182545 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. CM_UNINA_FFOOD__FFOOD_337__bin.6 MASTER_WP4_UNINA_1__PT008_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044737__bin.7 69.15584416 0 46 1077948 36.62 33713 SAMN04009568 SRR2182543; SRR2182544; SRR2182545 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. FontanaF_2023__SRR20746979__bin.3 MASTER_WP4_TEAGASC_1__TGS03-22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044738__bin.3 96.91358025 2.777777778 44 2906063 44.91 123008 SAMN04009567 SRR2182539; SRR2182540; SRR2182541 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044738__bin.10 95.49652489 2.504553734 278 1802001 38.55 8326 SAMN04009567 SRR2182539; SRR2182540; SRR2182541 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. LeechJ_xxxx__AF78__bin.4 WalshL_xxxx__H3_S87__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus reuteri probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044738__bin.11 92.13511869 1.257861635 289 2159769 38.73 9787 SAMN04009567 SRR2182539; SRR2182540; SRR2182541 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. ODFM-BA-A-0139-001_Enterococcus_lactis_CICC_24101 PatroJN_2016__SRS1044738__bin.11 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B lactis probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044738__bin.14 54.16666667 1.843317972 97 1212562 60.09 16291 SAMN04009567 SRR2182539; SRR2182540; SRR2182541 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. LeechJ_2020__ERS3967706__bin.3 PatroJN_2016__SRS1044738__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium longum probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044738__bin.7 55.46666667 0 11 959541 60.59 136915 SAMN04009567 SRR2182539; SRR2182540; SRR2182541 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. MAG_502 MAG_502 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium animalis probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044738__bin.12 98.94480519 0 24 1931708 34.52 166953 SAMN04009567 SRR2182539; SRR2182540; SRR2182541 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. PatroJN_2016__SRS1044738__bin.12 PatroJN_2016__SRS1044738__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus acidophilus probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044738__bin.8 50.86206897 0 290 1443524 58.55 5894 SAMN04009567 SRR2182539; SRR2182540; SRR2182541 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. PasolliE_2020__SRS6525478__bin.8 PatroJN_2016__SRS1044738__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium breve probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044739__bin.7 97.19963008 0.27173913 90 2810244 46.27 45618 SAMN04009566 SRR2182536; SRR2182537; SRR2182538 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. FontanaF_2023__SRR20746951__bin.4 PatroJN_2016__SRS1044739__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044739__bin.9 78.79776021 0 91 2382621 46.68 44008 SAMN04009566 SRR2182536; SRR2182537; SRR2182538 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. CM_UNINA_FFOOD__FFOOD_337__bin.6 MASTER_WP4_UNINA_1__PT008_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044739__bin.10 97.33094837 2.777777778 47 2871470 44.91 105805 SAMN04009566 SRR2182536; SRR2182537; SRR2182538 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044739__bin.5 50.75555556 0 20 1058489 60.31 67803 SAMN04009566 SRR2182536; SRR2182537; SRR2182538 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. MAG_502 MAG_502 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium animalis probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable PatroJN_2016__SRS1044740__bin.1 68.29710145 0.27173913 76 2072430 46.74 37397 SAMN04009563 SRR2182556; SRR2182555 USA PRJNA291686 SRP062833 NCBI Patro, J.N., Ramachandran, P., Barnaba, T., Mammel, M.K., Lewis, J.L., and Elkins, C.A. (2016). Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. mSphere 1. 10.1128/mSphere.00057-16. CM_UNINA_FFOOD__FFOOD_337__bin.6 PatroJN_2016__SRS1044740__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus probiotics probiotics Microbial Microbial microbes probiotics powder low mixed none not applicable ChaconVargasK_2020__SRS6087088__bin.11 84.13523274 1.006554307 108 1039288 37.47 17894 SRS6087088 SRR10997050 Mexico PRJNA603591 SRP245673 NCBI Chacón-Vargas, K., Torres, J., Giles-Gómez, M., Escalante, A., and Gibbons, J.G. (2020). Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing. Sci. Rep. 10, 15115. ChaconVargasK_2020__SRS6087088__bin.11 ChaconVargasK_2020__SRS6087088__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc NA pulque pulque Plant Sugar agave beverage liquid medium lactic mesophilic 1-2 weeks ChaconVargasK_2020__SRS6087088__bin.16 74.6536524 4.88497568 730 3432268 52.07 5720 SRS6087088 SRR10997050 Mexico PRJNA603591 SRP245673 NCBI Chacón-Vargas, K., Torres, J., Giles-Gómez, M., Escalante, A., and Gibbons, J.G. (2020). Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing. Sci. Rep. 10, 15115. ChaconVargasK_2020__SRS6087088__bin.16 ChaconVargasK_2020__SRS6087088__bin.16 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Rahnella NA pulque pulque Plant Sugar agave beverage liquid medium lactic mesophilic 1-2 weeks ChaconVargasK_2020__SRS6087088__bin.20 81.27991505 3.522012579 328 1530491 35.16 5536 SRS6087088 SRR10997050 Mexico PRJNA603591 SRP245673 NCBI Chacón-Vargas, K., Torres, J., Giles-Gómez, M., Escalante, A., and Gibbons, J.G. (2020). Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing. Sci. Rep. 10, 15115. ChaconVargasK_2020__SRS6087094__bin.4 ChaconVargasK_2020__SRS6087094__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A NA pulque pulque Plant Sugar agave beverage liquid medium lactic mesophilic 1-2 weeks ChaconVargasK_2020__SRS6087088__bin.4 72.85179173 3.051800615 446 3144400 49.39 9629 SRS6087088 SRR10997050 Mexico PRJNA603591 SRP245673 NCBI Chacón-Vargas, K., Torres, J., Giles-Gómez, M., Escalante, A., and Gibbons, J.G. (2020). Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing. Sci. Rep. 10, 15115. FalardeauJ_2023__SRR20811283__bin.7 ChaconVargasK_2020__SRS6087088__bin.4 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia alvei pulque pulque Plant Sugar agave beverage liquid medium lactic mesophilic 1-2 weeks ChaconVargasK_2020__SRS6087088__bin.7 57.15155204 1.543923717 84 1016976 36.13 26399 SRS6087088 SRR10997050 Mexico PRJNA603591 SRP245673 NCBI Chacón-Vargas, K., Torres, J., Giles-Gómez, M., Escalante, A., and Gibbons, J.G. (2020). Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing. Sci. Rep. 10, 15115. ChaconVargasK_2020__SRS6087094__bin.5 ChaconVargasK_2020__SRS6087088__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A NA pulque pulque Plant Sugar agave beverage liquid medium lactic mesophilic 1-2 weeks ChaconVargasK_2020__SRS6087088__bin.9 81.848659 1.149425287 346 1558974 37.67 5510 SRS6087088 SRR10997050 Mexico PRJNA603591 SRP245673 NCBI Chacón-Vargas, K., Torres, J., Giles-Gómez, M., Escalante, A., and Gibbons, J.G. (2020). Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing. Sci. Rep. 10, 15115. ChaconVargasK_2020__SRS6087094__bin.10 ChaconVargasK_2020__SRS6087094__bin.10 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter NA pulque pulque Plant Sugar agave beverage liquid medium lactic mesophilic 1-2 weeks ChaconVargasK_2020__SRS6087089__bin.16 62.06896552 0 80 739154 37.42 13474 SRS6087089 SRR10997049 Mexico PRJNA603591 SRP245673 NCBI Chacón-Vargas, K., Torres, J., Giles-Gómez, M., Escalante, A., and Gibbons, J.G. (2020). Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing. Sci. Rep. 10, 15115. ChaconVargasK_2020__SRS6087088__bin.11 ChaconVargasK_2020__SRS6087088__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc NA pulque pulque Plant Sugar agave beverage liquid medium lactic mesophilic 1-2 weeks ChaconVargasK_2020__SRS6087089__bin.5 63.11949686 0.754716981 86 1190762 36.04 26342 SRS6087089 SRR10997049 Mexico PRJNA603591 SRP245673 NCBI Chacón-Vargas, K., Torres, J., Giles-Gómez, M., Escalante, A., and Gibbons, J.G. (2020). Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing. Sci. Rep. 10, 15115. ChaconVargasK_2020__SRS6087094__bin.5 ChaconVargasK_2020__SRS6087094__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A NA pulque pulque Plant Sugar agave beverage liquid medium lactic mesophilic 1-2 weeks ChaconVargasK_2020__SRS6087089__bin.15 55.62557093 1.142736893 391 1993382 49.35 5619 SRS6087089 SRR10997049 Mexico PRJNA603591 SRP245673 NCBI Chacón-Vargas, K., Torres, J., Giles-Gómez, M., Escalante, A., and Gibbons, J.G. (2020). Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing. Sci. Rep. 10, 15115. FalardeauJ_2023__SRR20811283__bin.7 ChaconVargasK_2020__SRS6087089__bin.15 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia alvei pulque pulque Plant Sugar agave beverage liquid medium lactic mesophilic 1-2 weeks ChaconVargasK_2020__SRS6087089__bin.25 83.22115688 2.986111111 473 2537236 39.48 7057 SRS6087089 SRR10997049 Mexico PRJNA603591 SRP245673 NCBI Chacón-Vargas, K., Torres, J., Giles-Gómez, M., Escalante, A., and Gibbons, J.G. (2020). Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing. Sci. Rep. 10, 15115. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 ChaconVargasK_2020__SRS6087091__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii pulque pulque Plant Sugar agave beverage liquid medium lactic mesophilic 1-2 weeks ChaconVargasK_2020__SRS6087089__bin.27 50 0 33 476741 42.71 20256 SRS6087089 SRR10997049 Mexico PRJNA603591 SRP245673 NCBI Chacón-Vargas, K., Torres, J., Giles-Gómez, M., Escalante, A., and Gibbons, J.G. (2020). Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing. Sci. Rep. 10, 15115. ChaconVargasK_2020__SRS6087091__bin.5 ChaconVargasK_2020__SRS6087091__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus sp002418055 pulque pulque Plant Sugar agave beverage liquid medium lactic mesophilic 1-2 weeks ChaconVargasK_2020__SRS6087089__bin.20 99.375 0.625 41 1508331 36.65 61727 SRS6087089 SRR10997049 Mexico PRJNA603591 SRP245673 NCBI Chacón-Vargas, K., Torres, J., Giles-Gómez, M., Escalante, A., and Gibbons, J.G. (2020). Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing. Sci. Rep. 10, 15115. ChaconVargasK_2020__SRS6087090__bin.7 ChaconVargasK_2020__SRS6087090__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Fructilactobacillus NA pulque pulque Plant Sugar agave beverage liquid medium lactic mesophilic 1-2 weeks ChaconVargasK_2020__SRS6087090__bin.16 51.72413793 0 74 638723 37.33 11939 SRS6087090 SRR10997047 Mexico PRJNA603591 SRP245673 NCBI Chacón-Vargas, K., Torres, J., Giles-Gómez, M., Escalante, A., and Gibbons, J.G. (2020). Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing. Sci. Rep. 10, 15115. ChaconVargasK_2020__SRS6087088__bin.11 ChaconVargasK_2020__SRS6087088__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc NA pulque pulque Plant Sugar agave beverage liquid medium lactic mesophilic 1-2 weeks ChaconVargasK_2020__SRS6087090__bin.6 66.28437951 1.299822239 467 2456232 49.34 6277 SRS6087090 SRR10997047 Mexico PRJNA603591 SRP245673 NCBI Chacón-Vargas, K., Torres, J., Giles-Gómez, M., Escalante, A., and Gibbons, J.G. (2020). Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing. Sci. Rep. 10, 15115. FalardeauJ_2023__SRR20811283__bin.7 ChaconVargasK_2020__SRS6087090__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia alvei pulque pulque Plant Sugar agave beverage liquid medium lactic mesophilic 1-2 weeks ChaconVargasK_2020__SRS6087090__bin.22 92.18642829 2.970779221 106 1200579 43.19 17514 SRS6087090 SRR10997047 Mexico PRJNA603591 SRP245673 NCBI Chacón-Vargas, K., Torres, J., Giles-Gómez, M., Escalante, A., and Gibbons, J.G. (2020). Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing. Sci. Rep. 10, 15115. ChaconVargasK_2020__SRS6087091__bin.5 ChaconVargasK_2020__SRS6087091__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus sp002418055 pulque pulque Plant Sugar agave beverage liquid medium lactic mesophilic 1-2 weeks ChaconVargasK_2020__SRS6087090__bin.7 99.375 0.625 38 1457760 36.73 61727 SRS6087090 SRR10997047 Mexico PRJNA603591 SRP245673 NCBI Chacón-Vargas, K., Torres, J., Giles-Gómez, M., Escalante, A., and Gibbons, J.G. (2020). Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing. Sci. Rep. 10, 15115. ChaconVargasK_2020__SRS6087090__bin.7 ChaconVargasK_2020__SRS6087090__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Fructilactobacillus NA pulque pulque Plant Sugar agave beverage liquid medium lactic mesophilic 1-2 weeks ChaconVargasK_2020__SRS6087090__bin.12 94.04977376 3.986209869 133 1879147 46.21 26431 SRS6087090 SRR10997047 Mexico PRJNA603591 SRP245673 NCBI Chacón-Vargas, K., Torres, J., Giles-Gómez, M., Escalante, A., and Gibbons, J.G. (2020). Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing. Sci. Rep. 10, 15115. MortensenS_xxxx__WK043-2-L-48h-03G7_S80__bin.1 MortensenS_xxxx__WK043-2-L-48h-03G7_S80__bin.1 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis B pulque pulque Plant Sugar agave beverage liquid medium lactic mesophilic 1-2 weeks ChaconVargasK_2020__SRS6087091__bin.3 50.16360044 0.070224719 93 718763 37.61 10815 SRS6087091 SRR10997046 Mexico PRJNA603591 SRP245673 NCBI Chacón-Vargas, K., Torres, J., Giles-Gómez, M., Escalante, A., and Gibbons, J.G. (2020). Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing. Sci. Rep. 10, 15115. ChaconVargasK_2020__SRS6087088__bin.11 ChaconVargasK_2020__SRS6087088__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc NA pulque pulque Plant Sugar agave beverage liquid medium lactic mesophilic 1-2 weeks ChaconVargasK_2020__SRS6087091__bin.6 61.02463036 1.334680135 463 2261189 49.51 5643 SRS6087091 SRR10997046 Mexico PRJNA603591 SRP245673 NCBI Chacón-Vargas, K., Torres, J., Giles-Gómez, M., Escalante, A., and Gibbons, J.G. (2020). Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing. Sci. Rep. 10, 15115. FalardeauJ_2023__SRR20811283__bin.7 ChaconVargasK_2020__SRS6087091__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia alvei pulque pulque Plant Sugar agave beverage liquid medium lactic mesophilic 1-2 weeks ChaconVargasK_2020__SRS6087091__bin.10 93.05505952 4.368179563 373 2850699 39.32 10814 SRS6087091 SRR10997046 Mexico PRJNA603591 SRP245673 NCBI Chacón-Vargas, K., Torres, J., Giles-Gómez, M., Escalante, A., and Gibbons, J.G. (2020). Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing. Sci. Rep. 10, 15115. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 ChaconVargasK_2020__SRS6087091__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii pulque pulque Plant Sugar agave beverage liquid medium lactic mesophilic 1-2 weeks ChaconVargasK_2020__SRS6087091__bin.5 88.04531991 2.121212121 120 1076086 43.32 14214 SRS6087091 SRR10997046 Mexico PRJNA603591 SRP245673 NCBI Chacón-Vargas, K., Torres, J., Giles-Gómez, M., Escalante, A., and Gibbons, J.G. (2020). Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing. Sci. Rep. 10, 15115. ChaconVargasK_2020__SRS6087091__bin.5 ChaconVargasK_2020__SRS6087091__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus sp002418055 pulque pulque Plant Sugar agave beverage liquid medium lactic mesophilic 1-2 weeks ChaconVargasK_2020__SRS6087091__bin.1 99.375 0.625 42 1507193 36.66 61727 SRS6087091 SRR10997046 Mexico PRJNA603591 SRP245673 NCBI Chacón-Vargas, K., Torres, J., Giles-Gómez, M., Escalante, A., and Gibbons, J.G. (2020). Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing. Sci. Rep. 10, 15115. ChaconVargasK_2020__SRS6087090__bin.7 ChaconVargasK_2020__SRS6087090__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Fructilactobacillus NA pulque pulque Plant Sugar agave beverage liquid medium lactic mesophilic 1-2 weeks ChaconVargasK_2020__SRS6087091__bin.16 64.05294012 0.245535714 337 1616802 44.26 5659 SRS6087091 SRR10997046 Mexico PRJNA603591 SRP245673 NCBI Chacón-Vargas, K., Torres, J., Giles-Gómez, M., Escalante, A., and Gibbons, J.G. (2020). Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing. Sci. Rep. 10, 15115. ChaconVargasK_2020__SRS6087091__bin.16 ChaconVargasK_2020__SRS6087091__bin.16 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Secundilactobacillus NA pulque pulque Plant Sugar agave beverage liquid medium lactic mesophilic 1-2 weeks ChaconVargasK_2020__SRS6087094__bin.7 62.35620653 0.230481129 65 702204 37.54 18977 SRS6087094 SRR10997048 Mexico PRJNA603591 SRP245673 NCBI Chacón-Vargas, K., Torres, J., Giles-Gómez, M., Escalante, A., and Gibbons, J.G. (2020). Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing. Sci. Rep. 10, 15115. ChaconVargasK_2020__SRS6087088__bin.11 ChaconVargasK_2020__SRS6087088__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc NA pulque pulque Plant Sugar agave beverage liquid medium lactic mesophilic 1-2 weeks ChaconVargasK_2020__SRS6087094__bin.4 96.50030432 3.270440252 178 1612126 35.63 12066 SRS6087094 SRR10997048 Mexico PRJNA603591 SRP245673 NCBI Chacón-Vargas, K., Torres, J., Giles-Gómez, M., Escalante, A., and Gibbons, J.G. (2020). Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing. Sci. Rep. 10, 15115. ChaconVargasK_2020__SRS6087094__bin.4 ChaconVargasK_2020__SRS6087094__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A NA pulque pulque Plant Sugar agave beverage liquid medium lactic mesophilic 1-2 weeks ChaconVargasK_2020__SRS6087094__bin.5 96.17163725 1.257861635 156 1920194 35.87 21944 SRS6087094 SRR10997048 Mexico PRJNA603591 SRP245673 NCBI Chacón-Vargas, K., Torres, J., Giles-Gómez, M., Escalante, A., and Gibbons, J.G. (2020). Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing. Sci. Rep. 10, 15115. ChaconVargasK_2020__SRS6087094__bin.5 ChaconVargasK_2020__SRS6087094__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A NA pulque pulque Plant Sugar agave beverage liquid medium lactic mesophilic 1-2 weeks ChaconVargasK_2020__SRS6087094__bin.10 84.6743295 1.340996169 270 1722100 37.53 8361 SRS6087094 SRR10997048 Mexico PRJNA603591 SRP245673 NCBI Chacón-Vargas, K., Torres, J., Giles-Gómez, M., Escalante, A., and Gibbons, J.G. (2020). Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing. Sci. Rep. 10, 15115. ChaconVargasK_2020__SRS6087094__bin.10 ChaconVargasK_2020__SRS6087094__bin.10 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter NA pulque pulque Plant Sugar agave beverage liquid medium lactic mesophilic 1-2 weeks ChaconVargasK_2020__SRS6087094__bin.3 76.56504751 0.49193231 127 1022212 42.79 10926 SRS6087094 SRR10997048 Mexico PRJNA603591 SRP245673 NCBI Chacón-Vargas, K., Torres, J., Giles-Gómez, M., Escalante, A., and Gibbons, J.G. (2020). Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing. Sci. Rep. 10, 15115. ChaconVargasK_2020__SRS6087091__bin.5 ChaconVargasK_2020__SRS6087091__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus sp002418055 pulque pulque Plant Sugar agave beverage liquid medium lactic mesophilic 1-2 weeks ChaconVargasK_2020__SRS6087094__bin.9 96.875 0.625 42 1415398 36.85 51129 SRS6087094 SRR10997048 Mexico PRJNA603591 SRP245673 NCBI Chacón-Vargas, K., Torres, J., Giles-Gómez, M., Escalante, A., and Gibbons, J.G. (2020). Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing. Sci. Rep. 10, 15115. ChaconVargasK_2020__SRS6087090__bin.7 ChaconVargasK_2020__SRS6087090__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Fructilactobacillus NA pulque pulque Plant Sugar agave beverage liquid medium lactic mesophilic 1-2 weeks ChaconVargasK_2020__SRS6087094__bin.8 50 1 614 5403179 38.27 13999 SRS6087094 SRR10997048 Mexico PRJNA603591 SRP245673 NCBI Chacón-Vargas, K., Torres, J., Giles-Gómez, M., Escalante, A., and Gibbons, J.G. (2020). Genomic profiling of bacterial and fungal communities and their predictive functionality during pulque fermentation by whole-genome shotgun sequencing. Sci. Rep. 10, 15115. ChaconVargasK_2020__SRS6087094__bin.8 ChaconVargasK_2020__SRS6087094__bin.8 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces paradoxus pulque pulque Plant Sugar agave beverage liquid medium lactic mesophilic 1-2 weeks EBC_135.6 55.22 1.3 815 8081657 35.06 13399 SAMN40633111 SRS20892346 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 SternesPR_2017__T1D1_A_shotgun__bin.3 EBC_135.6 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycodaceae;Hanseniaspora Hanseniaspora opuntiae pickle yellow peach queens_sf_lacto_ferm_4_yellow_peach_82621 Plant Fruit yellow peach pickled fruit solid none lactic mesophilic 1 day - 3 months EBC_134.5 98.39 8.33 294 6218021 29.54 34133 SAMN40633110 SRS20892347 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_134.5 EBC_134.5 Bacillota;Clostridia;Clostridiales;Clostridiaceae;Clostridium Clostridium beijerinckii pickle serrano pepper queens_sf_lacto_ferm_serrano Plant Vegetables_Aromatics chili pepper pickled vegetables solid none lactic mesophilic 1 day - 3 months EBC_134.6 94.08 0.65 118 5415506 56.17 76110 SAMN40633110 SRS20892347 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_134.6 EBC_134.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella michiganensis pickle serrano pepper queens_sf_lacto_ferm_serrano Plant Vegetables_Aromatics chili pepper pickled vegetables solid none lactic mesophilic 1 day - 3 months EBC_134.7 99.07 3.09 126 5799420 57.29 80797 SAMN40633110 SRS20892347 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_134.7 EBC_134.7 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella variicola pickle serrano pepper queens_sf_lacto_ferm_serrano Plant Vegetables_Aromatics chili pepper pickled vegetables solid none lactic mesophilic 1 day - 3 months EBC_133.12 91.76 0.54 197 2928074 40.12 22956 SAMN40633109 SRS20892345 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_133.12 EBC_133.12 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Moellerella Moellerella wisconsensis kimchi mukeunji queens_sf_mukeunji Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months EBC_133.14 80.34 0.11 94 1144123 26.65 24119 SAMN40633109 SRS20892345 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_133.14 EBC_133.14 Bacillota;Bacilli;Mycoplasmatales;Mycoplasmataceae;Spiroplasma Spiroplasma citri kimchi mukeunji queens_sf_mukeunji Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months EBC_040.8 81.93 0.91 622 4138660 67.22 7636 SAMN40633073 SRS20892306 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_040.8 EBC_040.8 Pseudomonadota;Alphaproteobacteria;Rhizobiales;Rhizobiaceae;Aureimonas_A Aureimonas A sp001425485 kimchi queens_water_kimchi Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months GCF_000379545.1_ASM37954v1_genomic 100 0 3 3690768 57.06 3683903 GCF_000379545.1 GCF_000379545.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_000379545.1_ASM37954v1_genomic GCF_000379545.1_ASM37954v1_genomic Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter aceti vinegar quick_vinegar Plant Fruit grape vinegar liquid low acetic mesophilic 3-4 weeks C-R06.bin.10 91.62 1.35 147 3636195 37.73 38153 SAMN17450164 SRR13496620 Brazil PRJNA693797 SRP302686 NCBI Kothe CI, Mohellibi N, Renault P. Revealing the microbial heritage of traditional Brazilian cheeses through metagenomics. Food Res Int. 2022 Jul;157:111265. doi: 10.1016/j.foodres.2022.111265. C-R06.bin.10 C-R06.bin.10 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Proteus Proteus vulgaris cheese araxa raw_araxa_cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months C-R06.bin.12 100 0.64 54 3940686 70.36 126465 SAMN17450164 SRR13496620 Brazil PRJNA693797 SRP302686 NCBI Kothe CI, Mohellibi N, Renault P. Revealing the microbial heritage of traditional Brazilian cheeses through metagenomics. Food Res Int. 2022 Jul;157:111265. doi: 10.1016/j.foodres.2022.111265. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium cheese araxa raw_araxa_cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months C-R06.bin.5 97.21 7.21 194 4842727 41.27 202743 SAMN17450164 SRR13496620 Brazil PRJNA693797 SRP302686 NCBI Kothe CI, Mohellibi N, Renault P. Revealing the microbial heritage of traditional Brazilian cheeses through metagenomics. Food Res Int. 2022 Jul;157:111265. doi: 10.1016/j.foodres.2022.111265. C-R06.bin.5 C-R06.bin.5 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Providencia Providencia xianensis cheese araxa raw_araxa_cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months C-R06.bin.7 94.43 4.92 422 4543704 66.21 20756 SAMN17450164 SRR13496620 Brazil PRJNA693797 SRP302686 NCBI Kothe CI, Mohellibi N, Renault P. Revealing the microbial heritage of traditional Brazilian cheeses through metagenomics. Food Res Int. 2022 Jul;157:111265. doi: 10.1016/j.foodres.2022.111265. CM_UNINA_FFOOD__FFOOD_405__bin.12 C-R06.bin.7 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Xanthomonadaceae;Stenotrophomonas Stenotrophomonas maltophilia A cheese araxa raw_araxa_cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months C-R07.bin.7 99.44 0 37 2492637 33.03 290085 SAMN17450165 SRR13496632 Brazil PRJNA693797 SRP302686 NCBI Kothe CI, Mohellibi N, Renault P. Revealing the microbial heritage of traditional Brazilian cheeses through metagenomics. Food Res Int. 2022 Jul;157:111265. doi: 10.1016/j.foodres.2022.111265. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus cheese araxa raw_araxa_cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months C-R09.bin.5 100 0 85 3491683 68.89 79481 SAMN17450166 SRR13496631 Brazil PRJNA693797 SRP302686 NCBI Kothe CI, Mohellibi N, Renault P. Revealing the microbial heritage of traditional Brazilian cheeses through metagenomics. Food Res Int. 2022 Jul;157:111265. doi: 10.1016/j.foodres.2022.111265. C-R09.bin.5 C-R09.bin.5 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Acidipropionibacterium Acidipropionibacterium acidipropionici cheese araxa raw_araxa_cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months C-03.Ssa-BR 97.97 1.1 182 1896140 39.4 16848 SAMN17450155 SRR13496634 Brazil PRJNA693797 SRP302686 NA Kothe CI, Mohellibi N, Renault P. Revealing the microbial heritage of traditional Brazilian cheeses through metagenomics. Food Res Int. 2022 Jul;157:111265. doi: 10.1016/j.foodres.2022.111265. C-03.Ssa-BR C-03.Ssa-BR Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus sp003521145 cheese canastra raw_canastra_cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months C-R02.bin.1 92.75 1.03 84 3174852 65.79 74585 SAMN17450161 SRR13496623 Brazil PRJNA693797 SRP302686 NCBI Kothe CI, Mohellibi N, Renault P. Revealing the microbial heritage of traditional Brazilian cheeses through metagenomics. Food Res Int. 2022 Jul;157:111265. doi: 10.1016/j.foodres.2022.111265. C-R02.bin.1 C-R02.bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Galactobacter Galactobacter sp022712295 cheese canastra raw_canastra_cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months C-R03.bin.7 98.91 0 161 2047554 38.52 23316 SAMN17450162 SRR13496622 Brazil PRJNA693797 SRP302686 NCBI Kothe CI, Mohellibi N, Renault P. Revealing the microbial heritage of traditional Brazilian cheeses through metagenomics. Food Res Int. 2022 Jul;157:111265. doi: 10.1016/j.foodres.2022.111265. C-R03.bin.7 C-R03.bin.7 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Bavariicoccus Bavariicoccus seileri cheese canastra raw_canastra_cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months C-R13.bin.1 93.13 1.11 274 2995942 71.68 15954 SAMN17450168 SRR13496629 Brazil PRJNA693797 SRP302686 NCBI Kothe CI, Mohellibi N, Renault P. Revealing the microbial heritage of traditional Brazilian cheeses through metagenomics. Food Res Int. 2022 Jul;157:111265. doi: 10.1016/j.foodres.2022.111265. C-R13.bin.1 C-R13.bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA cheese serro raw_serro_cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months C-R13.bin.7 98.87 0.45 83 3080328 67.54 95584 SAMN17450168 SRR13496629 Brazil PRJNA693797 SRP302686 NCBI Kothe CI, Mohellibi N, Renault P. Revealing the microbial heritage of traditional Brazilian cheeses through metagenomics. Food Res Int. 2022 Jul;157:111265. doi: 10.1016/j.foodres.2022.111265. FalardeauJ_2023__SRR20811223__bin.4 FalardeauJ_2023__SRR20811223__bin.4 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile cheese serro raw_serro_cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months C-R14.bin.10 93.05 3.25 171 3824389 66 42994 SAMN17450169 SRR13496628 Brazil PRJNA693797 SRP302686 NCBI Kothe CI, Mohellibi N, Renault P. Revealing the microbial heritage of traditional Brazilian cheeses through metagenomics. Food Res Int. 2022 Jul;157:111265. doi: 10.1016/j.foodres.2022.111265. C-R14.bin.10 C-R14.bin.10 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp021023135 cheese serro raw_serro_cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months C-R14.bin.5 87.65 2.81 449 3797258 65.21 12389 SAMN17450169 SRR13496628 Brazil PRJNA693797 SRP302686 NCBI Kothe CI, Mohellibi N, Renault P. Revealing the microbial heritage of traditional Brazilian cheeses through metagenomics. Food Res Int. 2022 Jul;157:111265. doi: 10.1016/j.foodres.2022.111265. MASTER_WP4_FFoQSI_2__VB10-30__bin.20 C-R14.bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp004745075 cheese serro raw_serro_cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months C-R14.bin.7 89.7 2.29 568 3419437 65.25 7936 SAMN17450169 SRR13496628 Brazil PRJNA693797 SRP302686 NCBI Kothe CI, Mohellibi N, Renault P. Revealing the microbial heritage of traditional Brazilian cheeses through metagenomics. Food Res Int. 2022 Jul;157:111265. doi: 10.1016/j.foodres.2022.111265. DeFilippisF_xxxx__DS_2__bin.17 C-R14.bin.7 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium NA cheese serro raw_serro_cheese Animal Dairy milk cheese solid low lactic mesophilic 1-3 months EBC_145.4 96.69 1.89 259 4987809 55.73 37909 SAMN40633121 SRS20892358 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 MASTER_WP4_TEAGASC_1__TGS08-29__bin.64 EBC_145.4 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Serratia Serratia liquefaciens sauerkraut red_sauerkraut_21_d Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks EBC_144.5 76.02 3.45 52 4189759 54.86 140242 SAMN40633120 SRS20892356 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_144.5 EBC_144.5 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter_D NA sauerkraut red_sauerkraut_96_h Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks LiZ_2019__SRS3379157__bin.1 53.50877193 0 771 2362032 46.83 3271 SRS3379157 SRR7262880 China PRJNA473190 SRP149765 NCBI Li, Z., Dong, L., Zhao, C., and Zhu, Y. (2020). Metagenomic insights into the changes in microbial community and antimicrobial resistance genes associated with different salt content of red pepper (Capsicum annuum L.) sauce. Food Microbiol. 85, 103295. ODFM-BA-A-0009-005_Bacillus_velezensis_YJ11-1-4 LiZ_2019__SRS3379157__bin.1 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus velezensis chilli sauce red_pepper_sauce Plant Vegetables_Aromatics chili pepper seasoning semi-solid none lactic mesophilic 2-3 weeks LiZ_2019__SRS3379157__bin.3 99.44609788 0.639880952 195 4748655 55.55 37126 SRS3379157 SRR7262880 China PRJNA473190 SRP149765 NCBI Li, Z., Dong, L., Zhao, C., and Zhu, Y. (2020). Metagenomic insights into the changes in microbial community and antimicrobial resistance genes associated with different salt content of red pepper (Capsicum annuum L.) sauce. Food Microbiol. 85, 103295. LiZ_2019__SRS3379157__bin.3 LiZ_2019__SRS3379157__bin.3 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter Enterobacter mori chilli sauce red_pepper_sauce Plant Vegetables_Aromatics chili pepper seasoning semi-solid none lactic mesophilic 2-3 weeks LiZ_2019__SRS3379159__bin.6 87.912898620000007 2.111692845 458 1933945 38.46 4960 SRS3379159 SRR7262878 China PRJNA473190 SRP149765 NCBI Li, Z., Dong, L., Zhao, C., and Zhu, Y. (2020). Metagenomic insights into the changes in microbial community and antimicrobial resistance genes associated with different salt content of red pepper (Capsicum annuum L.) sauce. Food Microbiol. 85, 103295. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis chilli sauce red_pepper_sauce Plant Vegetables_Aromatics chili pepper seasoning semi-solid none lactic mesophilic 2-3 weeks LiZ_2019__SRS3379159__bin.7 63.4169279 1.724137931 645 3986768 52.38 7766 SRS3379159 SRR7262878 China PRJNA473190 SRP149765 NCBI Li, Z., Dong, L., Zhao, C., and Zhu, Y. (2020). Metagenomic insights into the changes in microbial community and antimicrobial resistance genes associated with different salt content of red pepper (Capsicum annuum L.) sauce. Food Microbiol. 85, 103295. MAG_426 MAG_580 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Citrobacter Citrobacter freundii chilli sauce red_pepper_sauce Plant Vegetables_Aromatics chili pepper seasoning semi-solid none lactic mesophilic 2-3 weeks LiZ_2019__SRS3379159__bin.2 57.8 0.9 1752 7937094 44.96 5380 SRS3379159 SRR7262878 China PRJNA473190 SRP149765 NCBI Li, Z., Dong, L., Zhao, C., and Zhu, Y. (2020). Metagenomic insights into the changes in microbial community and antimicrobial resistance genes associated with different salt content of red pepper (Capsicum annuum L.) sauce. Food Microbiol. 85, 103295. MASTER_WP4_FFoQSI_2__VB10-22__bin.15 LiZ_2019__SRS3379159__bin.2 Ascomycota;Saccharomycetes;Saccharomycetales;Trichomonascaceae;Wickerhamiella Wickerhamiella versatilis chilli sauce red_pepper_sauce Plant Vegetables_Aromatics chili pepper seasoning semi-solid none lactic mesophilic 2-3 weeks LiZ_2019__SRS3379165__bin.1 57.00268886 0.240575397 88 2392890 55.83 35925 SRS3379165 SRR7262872 China PRJNA473190 SRP149765 NCBI Li, Z., Dong, L., Zhao, C., and Zhu, Y. (2020). Metagenomic insights into the changes in microbial community and antimicrobial resistance genes associated with different salt content of red pepper (Capsicum annuum L.) sauce. Food Microbiol. 85, 103295. FontanaF_2023__SRR20746854__bin.2 MAG_40 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter Enterobacter intestinihominis chilli sauce red_pepper_sauce Plant Vegetables_Aromatics chili pepper seasoning semi-solid none lactic mesophilic 2-3 weeks LiZ_2019__SRS3379166__bin.6 77.94601137 1.832460733 447 1625997 38.58 4063 SRS3379166 SRR7262871 China PRJNA473190 SRP149765 NCBI Li, Z., Dong, L., Zhao, C., and Zhu, Y. (2020). Metagenomic insights into the changes in microbial community and antimicrobial resistance genes associated with different salt content of red pepper (Capsicum annuum L.) sauce. Food Microbiol. 85, 103295. GCF_900116935.1_Chromosome_genomic LiZ_2019__SRS3379166__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus Ligilactobacillus acidipiscis chilli sauce red_pepper_sauce Plant Vegetables_Aromatics chili pepper seasoning semi-solid none lactic mesophilic 2-3 weeks LiZ_2019__SRS3379166__bin.1 77.06896552 1.724137931 359 4338328 56.01 17450 SRS3379166 SRR7262871 China PRJNA473190 SRP149765 NCBI Li, Z., Dong, L., Zhao, C., and Zhu, Y. (2020). Metagenomic insights into the changes in microbial community and antimicrobial resistance genes associated with different salt content of red pepper (Capsicum annuum L.) sauce. Food Microbiol. 85, 103295. FontanaF_2023__SRR20746854__bin.2 MAG_576 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter Enterobacter intestinihominis chilli sauce red_pepper_sauce Plant Vegetables_Aromatics chili pepper seasoning semi-solid none lactic mesophilic 2-3 weeks LiZ_2019__SRS3379169__bin.5 79.77107008 0 97 2083232 46.19 31455 SRS3379169 SRR7262868 China PRJNA473190 SRP149765 NCBI Li, Z., Dong, L., Zhao, C., and Zhu, Y. (2020). Metagenomic insights into the changes in microbial community and antimicrobial resistance genes associated with different salt content of red pepper (Capsicum annuum L.) sauce. Food Microbiol. 85, 103295. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis chilli sauce red_pepper_sauce Plant Vegetables_Aromatics chili pepper seasoning semi-solid none lactic mesophilic 2-3 weeks LiZ_2019__SRS3379169__bin.2 93.08649554 2.604166667 160 2193654 51.7 19945 SRS3379169 SRR7262868 China PRJNA473190 SRP149765 NCBI Li, Z., Dong, L., Zhao, C., and Zhu, Y. (2020). Metagenomic insights into the changes in microbial community and antimicrobial resistance genes associated with different salt content of red pepper (Capsicum annuum L.) sauce. Food Microbiol. 85, 103295. LiZ_2019__SRS3379169__bin.2 LiZ_2019__SRS3379169__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus suantsaii chilli sauce red_pepper_sauce Plant Vegetables_Aromatics chili pepper seasoning semi-solid none lactic mesophilic 2-3 weeks LiZ_2019__SRS3379169__bin.4 91.50431787 1.203703704 334 1910352 37.09 7141 SRS3379169 SRR7262868 China PRJNA473190 SRP149765 NCBI Li, Z., Dong, L., Zhao, C., and Zhu, Y. (2020). Metagenomic insights into the changes in microbial community and antimicrobial resistance genes associated with different salt content of red pepper (Capsicum annuum L.) sauce. Food Microbiol. 85, 103295. YasirM_2022__SRR18335001__bin.1 LiZ_2019__SRS3379169__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus ethanolidurans chilli sauce red_pepper_sauce Plant Vegetables_Aromatics chili pepper seasoning semi-solid none lactic mesophilic 2-3 weeks LiZ_2019__SRS3379170__bin.8 75.05752841 0.989583333 112 1032974 46.1 12141 SRS3379170 SRR7262867 China PRJNA473190 SRP149765 NCBI Li, Z., Dong, L., Zhao, C., and Zhu, Y. (2020). Metagenomic insights into the changes in microbial community and antimicrobial resistance genes associated with different salt content of red pepper (Capsicum annuum L.) sauce. Food Microbiol. 85, 103295. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis chilli sauce red_pepper_sauce Plant Vegetables_Aromatics chili pepper seasoning semi-solid none lactic mesophilic 2-3 weeks LiZ_2019__SRS3379170__bin.6 91.35038442 4.521374459 259 2217503 51.6 12650 SRS3379170 SRR7262867 China PRJNA473190 SRP149765 NCBI Li, Z., Dong, L., Zhao, C., and Zhu, Y. (2020). Metagenomic insights into the changes in microbial community and antimicrobial resistance genes associated with different salt content of red pepper (Capsicum annuum L.) sauce. Food Microbiol. 85, 103295. LiZ_2019__SRS3379169__bin.2 LiZ_2019__SRS3379169__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus suantsaii chilli sauce red_pepper_sauce Plant Vegetables_Aromatics chili pepper seasoning semi-solid none lactic mesophilic 2-3 weeks LiZ_2019__SRS3379170__bin.5 87.43455497 0.074794316 60 1419060 35.2 45746 SRS3379170 SRR7262867 China PRJNA473190 SRP149765 NCBI Li, Z., Dong, L., Zhao, C., and Zhu, Y. (2020). Metagenomic insights into the changes in microbial community and antimicrobial resistance genes associated with different salt content of red pepper (Capsicum annuum L.) sauce. Food Microbiol. 85, 103295. MASTER_WP4_UNINA_1__FI010_71775__bin.21 MASTER_WP4_UNINA_1__FI010_71775__bin.21 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus alimentarius chilli sauce red_pepper_sauce Plant Vegetables_Aromatics chili pepper seasoning semi-solid none lactic mesophilic 2-3 weeks GCF_003946325.1_ASM394632v1_genomic 98.95 1.05 95 2644344 38.62 44771 GCF_003946325.1 GCF_003946325.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946325.1_ASM394632v1_genomic GCF_003946325.1_ASM394632v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus furfuricola nuka-doko rice_bran_paste Plant Grain rice starter culture semi-solid none lactic mesophilic 20 days GCF_000965255.1_ASM96525v1_genomic 99.04 0.62 25 2855212 55.45 228460 GCF_000965255.1 GCF_000965255.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_000965255.1_ASM96525v1_genomic GCF_000965255.1_ASM96525v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus spicheri sourdough rice rice_sourdough Plant Grain rice starch-based staple solid low mixed mesophilic 1-2 days LeechJ_2020__ERS3967720__bin.1 54.44791017 0 83 1052150 38.19 18953 ERS3967720 ERR4757835 Russia PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. Wy2_bin.circ.1 FontanaF_2023__SRR20746838__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese russian rostagroekport_voroznyj Animal Dairy milk cheese semi-solid low lactic mesophilic 2-4 weeks LeechJ_2020__ERS3967720__bin.2 99.0015361 0.296247531 122 2100705 60.18 23161 ERS3967720 ERR4757835 Russia PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967706__bin.3 LeechJ_2020__ERS3967706__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium longum cheese russian rostagroekport_voroznyj Animal Dairy milk cheese semi-solid low lactic mesophilic 2-4 weeks LeechJ_2020__ERS3967720__bin.5 98.09782609 1.494565217 84 1773804 47.2 43330 ERS3967720 ERR4757835 Russia PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967703__bin.6 LeechJ_2020__ERS3967703__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus mucosae cheese russian rostagroekport_voroznyj Animal Dairy milk cheese semi-solid low lactic mesophilic 2-4 weeks LeechJ_2020__ERS3967721__bin.2 96.95767196 2.174574728 199 1331585 38.18 8849 ERS3967721 ERR4757836 Russia PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_FFoQSI_3__VB09-26__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides cheese ruz'a ruza Animal Dairy milk cheese semi-solid low lactic mesophilic 1-3 months LeechJ_2020__ERS3967721__bin.4 89.58099397 0.573144105 166 1450249 39.47 11834 ERS3967721 ERR4757836 Russia PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese ruz'a ruza Animal Dairy milk cheese semi-solid low lactic mesophilic 1-3 months LeechJ_2020__ERS3967721__bin.3 52.71698113 0.849056604 81 948244 36.21 17597 ERS3967721 ERR4757836 Russia PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris cheese ruz'a ruza Animal Dairy milk cheese semi-solid low lactic mesophilic 1-3 months LeechJ_2020__ERS3967721__bin.5 78.93171608 1.981132075 340 1647281 39.18 5708 ERS3967721 ERR4757836 Russia PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. WalshL_xxxx__V9__bin.2 LeechJ_2020__ERS3967721__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis cheese ruz'a ruza Animal Dairy milk cheese semi-solid low lactic mesophilic 1-3 months GCF_009428965.1_ASM942896v1_genomic 99.46 0.54 1 1714771 53.29 1714771 GCF_009428965.1 GCF_009428965.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_009428965.1_ASM942896v1_genomic GCF_009428965.1_ASM942896v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus pontis sourdough rye rye_sourdough Plant Grain rye starch-based staple solid low mixed mesophilic 1-2 days GCF_008876665.1_ASM887666v1_genomic 99.46 0.54 1 1752928 42.63 1752928 GCF_008876665.1 GCF_008876665.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_008876665.1_ASM887666v1_genomic GCF_008876665.1_ASM887666v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus frumenti sourdough rye ryebran_sourdough Plant Grain rye starch-based staple solid low mixed mesophilic 1-2 days ODFM-BA-A-0177-001_Lactobacillus_homohiochii_DSM_20571 99.37 0.16 17 1390075 38.83 216430 ODFM-BA-A-0177-001 ODFM-BA-A-0177-001 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. ODFM-BA-A-0177-001_Lactobacillus_homohiochii_DSM_20571 ODFM-BA-A-0177-001_Lactobacillus_homohiochii_DSM_20571 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Fructilactobacillus Fructilactobacillus fructivorans sake sake Plant Grain rice beverage liquid high lactic mesophilic 6-12 months CM_UNINA_FFOOD__FFOOD_227__bin.1 84.91 0.37 75 1449455 42.28 26772 SAMN46068762 SRR31887287 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks CM_UNINA_FFOOD__FFOOD_227__bin.5 99.05 0.06 156 2631603 55.67 25563 SAMN46068762 SRR31887287 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_227__bin.5 CM_UNINA_FFOOD__FFOOD_227__bin.5 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium casei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks CM_UNINA_FFOOD__FFOOD_227__bin.9 50.04 0.44 588 1554133 68.02 2671 SAMN46068762 SRR31887287 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 CM_UNINA_FFOOD__FFOOD_227__bin.9 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks CM_UNINA_FFOOD__FFOOD_229__bin.10 99.85 0.07 21 1566487 37.24 186294 SAMN46068764 SRR31887169 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_229__bin.10 CM_UNINA_FFOOD__FFOOD_229__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc carnosum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks CM_UNINA_FFOOD__FFOOD_229__bin.3 81.24 4.77 108 1548846 42.18 20152 SAMN46068764 SRR31887169 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks CM_UNINA_FFOOD__FFOOD_229__bin.5 81.37 4.58 252 2610107 31.9 19126 SAMN46068764 SRR31887169 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811284__bin.4 CM_UNINA_FFOOD__FFOOD_229__bin.5 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Mammaliicoccus Mammaliicoccus vitulinus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks CM_UNINA_FFOOD__FFOOD_399__bin.8 73.25 0.01 9 1223360 36.96 258906 SAMN46068922 SRR31887206 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KharnaiorP_2023__SRR22859379__bin.8 DeFilippisF_xxxx__DF_7__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks CM_UNINA_FFOOD__FFOOD_400__bin.4 95.89 1.11 35 1908122 41.03 108367 SAMN46068923 SRR31887205 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 DeFilippisF_xxxx__DS_20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks CM_UNINA_FFOOD__FFOOD_400__bin.5 62.92 0.2 257 1099823 37.27 5084 SAMN46068923 SRR31887205 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KharnaiorP_2023__SRR22859379__bin.8 CM_UNINA_FFOOD__FFOOD_400__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks CM_UNINA_FFOOD__FFOOD_400__bin.6 81.29 0.52 83 2371775 32.8 135331 SAMN46068923 SRR31887205 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks CM_UNINA_FFOOD__FFOOD_400__bin.7 94.06 0.11 126 2678619 32.69 30434 SAMN46068923 SRR31887205 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 CM_UNINA_FFOOD__FFOOD_400__bin.7 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks CM_UNINA_FFOOD__FFOOD_402__bin.1 72.52 0.44 92 2017925 33.1 66580 SAMN46068925 SRR31887203 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks CM_UNINA_FFOOD__FFOOD_402__bin.10 63.47 0.06 28 1553818 32.75 83982 SAMN46068925 SRR31887203 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks CM_UNINA_FFOOD__FFOOD_403__bin.7 74.33 0 7 1906527 32.47 1272419 SAMN46068926 SRR31887202 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks CM_UNINA_FFOOD__FFOOD_404__bin.11 82.98 0.48 18 1540040 41.12 161908 SAMN46068927 SRR31887201 Italy PRJNA1206071 SRP555193 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 DeFilippisF_xxxx__DS_20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_1__bin.23 85.9863536 1.600441501 326 1925418 35.7 8032 SAMN40695535 SRR28523158 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 DeFilippisF_xxxx__DS_1__bin.23 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_1__bin.5 99.47643979 0.589005236 79 2313676 38.3 44378 SAMN40695535 SRR28523158 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_1__bin.22 97.14456392 1.018518519 83 2463851 33.03 75021 SAMN40695535 SRR28523158 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_1__bin.16 93.30533597 1.358695652 180 1930605 40.37 29534 SAMN40695535 SRR28523158 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_5__bin.15 DeFilippisF_xxxx__DF_5__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus rennini salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_1__bin.3 86.86398694 1.483420593 405 1934233 39.02 6098 SAMN40695535 SRR28523158 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_900116935.1_Chromosome_genomic DeFilippisF_xxxx__DS_1__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus Ligilactobacillus acidipiscis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_1__bin.14 96.35761589 1.456953642 334 2646999 36.27 12463 SAMN40695535 SRR28523158 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_2__bin.27 FontanaF_2023__SRR20746867__bin.10 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus koreensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_1__bin.18 51.72413793 0 44 782620 35.1 30676 SAMN40695535 SRR28523158 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__FI010_71775__bin.21 MASTER_WP4_UNINA_1__FI010_71775__bin.21 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus alimentarius salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_1__bin.17 97.22456792 1.308900524 81 2398935 35.74 52243 SAMN40695535 SRR28523158 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_1__bin.17 DeFilippisF_xxxx__DS_1__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus halodurans salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_1__bin.1 71 0.1 4023 25878088 48.77 7848 SAMN40695535 SRR28523158 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__SP009_71775__bin.32 MASTER_WP4_UNINA_1__SP009_71775__bin.32 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium nalgiovense salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_1__bin.21 79.5 0.9 2279 11710631 36.09 6413 SAMN40695535 SRR28523158 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_10__bin.2 68.26018809 0 73 1177345 42.11 20500 SAMN40695536 SRR28523156 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_10__bin.8 95.68100358 1.990740741 176 2697079 32.77 45806 SAMN40695536 SRR28523156 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_10__bin.10 62.06896552 0 9 1264614 32.44 1022103 SAMN40695536 SRR28523156 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_10__bin.6 99.47643979 1.112565445 64 2315686 38.28 75418 SAMN40695536 SRR28523156 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_10__bin.16 60.28066512 2.111129877 324 1027278 36.95 3291 SAMN40695536 SRR28523156 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_229__bin.10 CM_UNINA_FFOOD__FFOOD_229__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc carnosum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_103__bin.17 99.38271605 0 13 1878196 42.23 315310 SAMN40695537 SRR28523155 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 CM_UNINA_FFOOD__FFOOD_425__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_103__bin.10 99.44444444 1.944444444 15 2833139 32.62 493022 SAMN40695537 SRR28523155 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_103__bin.2 58.69565217 0.230566535 97 1077409 41.4 16834 SAMN40695537 SRR28523155 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 DeFilippisF_xxxx__DS_93__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_103__bin.15 97.64611699 2.307675852 244 5193357 62.77 33632 SAMN40695537 SRR28523155 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_111__bin.1 DeFilippisF_xxxx__DS_111__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E juntendi salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_103__bin.18 94.69324713 1.33045977 303 3862992 67.92 19142 SAMN40695537 SRR28523155 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_112__bin.19 DeFilippisF_xxxx__DS_112__bin.19 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Xanthomonadaceae;Stenotrophomonas Stenotrophomonas nematodicola salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_103__bin.1 94.50929752 2.317383384 180 5232514 62.83 49268 SAMN40695537 SRR28523155 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_112__bin.21 DeFilippisF_xxxx__DS_112__bin.21 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E chengduensis A salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_103__bin.4 67.2065992 0.706136621 1144 3581036 57 3329 SAMN40695537 SRR28523155 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. EBC_134.6 DeFilippisF_xxxx__DS_112__bin.5 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella michiganensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_103__bin.8 99.38936782 1.563218391 176 4829680 66.26 45600 SAMN40695537 SRR28523155 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_112__bin.12 DeFilippisF_xxxx__DS_112__bin.12 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Xanthomonadaceae;Stenotrophomonas Stenotrophomonas maltophilia Q salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_105__bin.18 96.2962963 0 79 1596282 37.77 38196 SAMN40695545 SRR28523147 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic DeFilippisF_xxxx__DS_105__bin.18 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_105__bin.9 65.68965517 0 148 1804196 32.5 25526 SAMN40695545 SRR28523147 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_105__bin.16 73.94265233 3.537037037 515 1893676 32.57 4022 SAMN40695545 SRR28523147 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 DeFilippisF_xxxx__DS_105__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_105__bin.4 76.79558011 0.828729282 55 2310250 34.26 246621 SAMN40695545 SRR28523147 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 178 178 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus carnosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_105__bin.5 56.89655172 0 12 1007908 40.89 118573 SAMN40695545 SRR28523147 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 DeFilippisF_xxxx__DS_105__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_105__bin.14 94.8 0.2 809 28602259 48.87 62205 SAMN40695545 SRR28523147 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__SP009_71775__bin.32 MASTER_WP4_UNINA_1__SP009_71775__bin.32 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium nalgiovense salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_105__bin.8 93.2 0.3 572 23882672 52.27 62841 SAMN40695545 SRR28523147 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_105__bin.8 DeFilippisF_xxxx__DS_105__bin.8 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;unknown unknown salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_106__bin.9 69.88505747 0 207 1731201 42.08 11792 SAMN40695546 SRR28523145 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_97__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_106__bin.1 99.47643979 1.897905759 54 2232815 38.34 61109 SAMN40695546 SRR28523145 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_106__bin.8 56.89655172 0 24 988436 40.97 73266 SAMN40695546 SRR28523145 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 AlvarezOrdonezA_xxxx__C05-18__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_106__bin.2 96.72774869 4.07504363 260 2331352 37.8 13041 SAMN40695546 SRR28523145 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_41__bin.12 DeFilippisF_xxxx__DF_41__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus Ligilactobacillus excrementavium salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_106__bin.5 85.05382207 2.099236641 406 1623951 38.26 4634 SAMN40695546 SRR28523145 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_106__bin.5 DeFilippisF_xxxx__DS_106__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus formosensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_107__bin.18 94.72222222 2.5 233 2605115 32.66 17808 SAMN40695547 SRR28523144 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_107__bin.10 71.16075622 4.652569653 661 2075503 43.03 3419 SAMN40695547 SRR28523144 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 182 DeFilippisF_xxxx__DS_107__bin.10 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_107__bin.12 98.89502762 1.38121547 17 2552655 34.47 618498 SAMN40695547 SRR28523144 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 178 178 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus carnosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_107__bin.13 96.3671875 0.208333333 54 2100246 49.38 58667 SAMN40695547 SRR28523144 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_003946095.1_ASM394609v1_genomic MASTER_WP4_UNINA_1__CM008_71775__bin.21 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus lindianensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_107__bin.2 98.34254144 3.314917127 213 2356084 36.46 16660 SAMN40695547 SRR28523144 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001703515.1_ASM170351v1_genomic GCF_001703515.1_ASM170351v1_genomic Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_107__bin.6 99.47643979 1.047120419 23 1574307 37.3 204038 SAMN40695547 SRR28523144 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_229__bin.10 CM_UNINA_FFOOD__FFOOD_229__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc carnosum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_108__bin.2 90.5050777 0 101 1655328 42.01 23452 SAMN40695548 SRR28523143 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_108__bin.9 89.50617284 0 6 1327784 41.94 315310 SAMN40695548 SRR28523143 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 CM_UNINA_FFOOD__FFOOD_425__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_108__bin.7 98.89502762 1.104972376 56 2560814 34.36 75355 SAMN40695548 SRR28523143 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 178 178 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus carnosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_108__bin.8 65.76086957 0 24 1347043 41.1 79834 SAMN40695548 SRR28523143 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 DeFilippisF_xxxx__DS_93__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_110__bin.8 94.5473251 3.395061728 63 2923589 44.61 93187 SAMN40695538 SRR28523154 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 DeFilippisF_xxxx__DS_110__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_110__bin.7 77.75862069 0 100 2201384 32.83 90383 SAMN40695538 SRR28523154 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_110__bin.19 99.17218543 0 98 2291853 35.62 39237 SAMN40695538 SRR28523154 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 DeFilippisF_xxxx__DS_110__bin.19 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_110__bin.11 97.95321637 1.169590643 433 3654546 70.55 13389 SAMN40695538 SRR28523154 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__491_Bayley__bin.8 WolfeBE_2014__491_Bayley__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Dermabacteraceae;Brachybacterium Brachybacterium alimentarium salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_110__bin.12 98.42931937 0.589005236 43 2299937 38.26 91566 SAMN40695538 SRR28523154 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_110__bin.1 92.14559387 0.957854406 152 2061264 43.01 19349 SAMN40695538 SRR28523154 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_3__VB14-22__bin.50 MASTER_WP4_FFoQSI_3__VB14-22__bin.50 Bacillota;Bacilli;Staphylococcales;Salinicoccaceae;Salinicoccus NA salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_110__bin.9 65.12539185 1.724137931 402 2363344 64.19 7110 SAMN40695538 SRR28523154 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_90__bin.4 DeFilippisF_xxxx__DS_110__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sandarakinum A salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_110__bin.15 84.71760797 0.096899225 243 2990443 62.89 15929 SAMN40695538 SRR28523154 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__575_CabotClothbound__bin.6 DeFilippisF_xxxx__DS_110__bin.15 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_111__bin.2 99.41969619 1.340388007 131 1836518 37.87 26084 SAMN40695554 SRR28523137 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_111__bin.13 58.62068966 0 97 1246734 32.13 21527 SAMN40695554 SRR28523137 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_111__bin.1 97.3818163 1.983130962 153 5191479 62.89 61473 SAMN40695554 SRR28523137 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_111__bin.1 DeFilippisF_xxxx__DS_111__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E juntendi salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_111__bin.23 53.44827586 0 26 1762681 67.87 124697 SAMN40695554 SRR28523137 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_112__bin.19 DeFilippisF_xxxx__DS_112__bin.19 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Xanthomonadaceae;Stenotrophomonas Stenotrophomonas nematodicola salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_111__bin.20 97.91666667 0.949429359 78 5326291 62.73 104583 SAMN40695554 SRR28523137 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_112__bin.21 DeFilippisF_xxxx__DS_112__bin.21 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E chengduensis A salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_111__bin.3 79.31034483 0 49 4995736 56.18 170332 SAMN40695554 SRR28523137 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. EBC_134.6 DeFilippisF_xxxx__DS_112__bin.5 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella michiganensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_111__bin.21 98.76436782 2.75862069 84 4778766 66.33 105227 SAMN40695554 SRR28523137 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_112__bin.12 DeFilippisF_xxxx__DS_112__bin.12 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Xanthomonadaceae;Stenotrophomonas Stenotrophomonas maltophilia Q salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_111__bin.11 90.497118939999993 1.652968037 253 2668842 43.72 13773 SAMN40695554 SRR28523137 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_111__bin.11 DeFilippisF_xxxx__DS_111__bin.11 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter fasciculus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_111__bin.14 98.27887167 2.148924308 194 6824205 64.3 62468 SAMN40695554 SRR28523137 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_111__bin.14 DeFilippisF_xxxx__DS_111__bin.14 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E NA salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_111__bin.25 96.11552103 1.047120419 22 1664332 37.03 196951 SAMN40695554 SRR28523137 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_229__bin.10 CM_UNINA_FFOOD__FFOOD_229__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc carnosum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_112__bin.11 94.69950267 1.086956522 97 1725518 42.01 26746 SAMN40695549 SRR28523142 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_112__bin.16 92.51572327 2.52365407 406 2037500 35.25 6272 SAMN40695549 SRR28523142 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 DeFilippisF_xxxx__DS_112__bin.16 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_112__bin.17 50 0 3 701960 41.14 598545 SAMN40695549 SRR28523142 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 CM_UNINA_FFOOD__FFOOD_425__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_112__bin.4 51.72413793 0 552 1930418 32.59 3825 SAMN40695549 SRR28523142 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 DeFilippisF_xxxx__DS_112__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_112__bin.9 97.45792426 1.539855072 56 1764727 41.25 49369 SAMN40695549 SRR28523142 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 DeFilippisF_xxxx__DS_93__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_112__bin.2 97.21335269 2.876197677 177 5236948 62.88 51903 SAMN40695549 SRR28523142 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_111__bin.1 DeFilippisF_xxxx__DS_111__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E juntendi salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_112__bin.19 99.28807471 0.043103448 65 4141927 67.56 91972 SAMN40695549 SRR28523142 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_112__bin.19 DeFilippisF_xxxx__DS_112__bin.19 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Xanthomonadaceae;Stenotrophomonas Stenotrophomonas nematodicola salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_112__bin.21 97.95914211 0.516528926 80 5285240 62.72 96111 SAMN40695549 SRR28523142 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_112__bin.21 DeFilippisF_xxxx__DS_112__bin.21 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E chengduensis A salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_112__bin.5 96.56320862 1.191066704 140 5639388 56.38 67585 SAMN40695549 SRR28523142 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. EBC_134.6 DeFilippisF_xxxx__DS_112__bin.5 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella michiganensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_112__bin.12 99.30316092 0.413793103 100 4719515 66.3 78583 SAMN40695549 SRR28523142 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_112__bin.12 DeFilippisF_xxxx__DS_112__bin.12 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Xanthomonadaceae;Stenotrophomonas Stenotrophomonas maltophilia Q salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_112__bin.18 60.67398119 0 380 2288737 43.91 6784 SAMN40695549 SRR28523142 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_111__bin.11 DeFilippisF_xxxx__DS_111__bin.11 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter fasciculus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_112__bin.13 85.26315789 4.385964912 315 6650289 64.38 39262 SAMN40695549 SRR28523142 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_111__bin.14 DeFilippisF_xxxx__DS_111__bin.14 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E NA salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_112__bin.10 59.48275862 1.724137931 314 3090994 32.15 16087 SAMN40695549 SRR28523142 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_13__bin.14 DeFilippisF_xxxx__DS_13__bin.14 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus shinii salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_116__bin.8 97.32241773 2.777777778 144 2841071 32.8 68478 SAMN40695539 SRR28523153 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_116__bin.17 56.37931034 0 224 1397816 32.5 9071 SAMN40695539 SRR28523153 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_116__bin.9 93.2591623 0.994764398 321 2142400 38.3 9629 SAMN40695539 SRR28523153 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_116__bin.14 50.86206897 0 85 834601 41.14 18376 SAMN40695539 SRR28523153 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 DeFilippisF_xxxx__DS_20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_116__bin.18 98.50071395 0.523560209 114 2606058 34.97 38712 SAMN40695539 SRR28523153 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_003946015.1_ASM394601v1_genomic GCF_003946015.1_ASM394601v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus insicii salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_12__bin.8 90.16207419 3.08993441 185 1647127 36.71 12640 SAMN40695555 SRR28523136 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967741__bin.9 DeFilippisF_xxxx__DS_12__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc gasicomitatum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_12__bin.17 95.00968992 1.385658915 527 3417981 63.32 8744 SAMN40695555 SRR28523136 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. We6_bin.circ.9 DeFilippisF_xxxx__DS_12__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium aurantiacum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_12__bin.26 62.93103448 1.724137931 182 1216488 32.6 10147 SAMN40695555 SRR28523136 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_12__bin.23 87.12067138 1.648550725 247 1624633 41.18 8198 SAMN40695555 SRR28523136 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 DeFilippisF_xxxx__DS_12__bin.23 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_12__bin.14 73.44827586 0 711 2878914 32.61 4673 SAMN40695555 SRR28523136 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259377__bin.4 DeFilippisF_xxxx__DS_12__bin.14 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum A salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_12__bin.25 63.30056056 0.130890052 262 1712782 37.59 8603 SAMN40695555 SRR28523136 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_69__bin.5 DeFilippisF_xxxx__DS_69__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus nodensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_12__bin.6 80.98541511 2.958115183 323 1501455 35.91 5782 SAMN40695555 SRR28523136 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__F01-19__bin.6 DeFilippisF_xxxx__DS_12__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Dellaglioa Dellaglioa algida salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_12__bin.20 98.5 0.1 327 11810405 36.27 65680 SAMN40695555 SRR28523136 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_120__bin.7 91.69702434 1.086956522 147 1633840 42.12 15935 SAMN40695556 SRR28523134 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_120__bin.8 89.50617284 0 7 1350787 41.96 315310 SAMN40695556 SRR28523134 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 CM_UNINA_FFOOD__FFOOD_425__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_120__bin.4 86.74033149 1.158438781 56 2379051 34.58 70939 SAMN40695556 SRR28523134 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 178 178 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus carnosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_120__bin.5 59.23913043 0 21 1053496 41.05 80537 SAMN40695556 SRR28523134 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 DeFilippisF_xxxx__DS_93__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_13__bin.9 87.27598566 0.740740741 158 2166932 32.75 29656 SAMN40695557 SRR28523133 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_13__bin.7 95.84744252 1.841620626 78 2329182 34.49 57079 SAMN40695557 SRR28523133 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 178 178 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus carnosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_13__bin.14 95.74820789 1.268518519 175 2892688 32.45 27277 SAMN40695557 SRR28523133 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_13__bin.14 DeFilippisF_xxxx__DS_13__bin.14 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus shinii salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_13__bin.1 98.6 0.1 292 11696366 36.27 71563 SAMN40695557 SRR28523133 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_19__bin.2 84.65363512 3.260030864 298 2746460 44.82 14200 SAMN40695562 SRR28523128 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 AlvarezOrdonezA_xxxx__Q06-27__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_19__bin.3 99.47643979 0.589005236 50 2286359 38.29 94836 SAMN40695562 SRR28523128 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_2__bin.8 60.34482759 0 163 1270930 42.41 9353 SAMN40695569 SRR28523324 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_2__bin.26 98.67549669 0.353200883 136 2308859 35.54 27162 SAMN40695569 SRR28523324 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 DeFilippisF_xxxx__DS_110__bin.19 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_2__bin.3 98.77300613 1.380368098 27 1892302 38.82 126111 SAMN40695569 SRR28523324 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2137_73322__bin.20 DeFilippisF_xxxx__DS_2__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella thailandensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_2__bin.6 63.96551724 0 254 2072583 32.66 12746 SAMN40695569 SRR28523324 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_2__bin.20 94.63749464 0.89017589 253 2746353 69.36 21913 SAMN40695569 SRR28523324 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_2__P2570__bin.32 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_2__bin.27 98.67549669 0 119 2447820 36.44 35260 SAMN40695569 SRR28523324 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_2__bin.27 DeFilippisF_xxxx__DS_2__bin.27 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus koreensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_2__bin.17 93.73927499 0.74002574 97 2758189 65.54 43325 SAMN40695569 SRR28523324 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_2__bin.17 DeFilippisF_xxxx__DS_2__bin.17 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium NA salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_2__bin.14 53.44827586 1.724137931 331 1821798 44 6502 SAMN40695569 SRR28523324 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746954__bin.5 DeFilippisF_xxxx__DS_2__bin.14 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter faecalis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_2__bin.10 66.48902821 1.724137931 228 3214462 43.25 27040 SAMN40695569 SRR28523324 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811274__bin.6 DeFilippisF_xxxx__DS_2__bin.10 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861365 salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_20__bin.6 96.91358025 3.343621399 65 3013382 44.65 69892 SAMN40695563 SRR28523127 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 AlvarezOrdonezA_xxxx__Q06-27__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_20__bin.4 97.22222222 1.666666667 248 2897115 32.46 21079 SAMN40695563 SRR28523127 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_20__bin.5 98.91304348 0 21 1797787 41.18 126862 SAMN40695563 SRR28523127 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 DeFilippisF_xxxx__DS_20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_21__bin.2 62.06896552 0 4 920012 33.99 687402 SAMN40695570 SRR28523323 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 178 178 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus carnosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_21__bin.9 99.45652174 0 17 1907971 41.13 204692 SAMN40695570 SRR28523323 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 DeFilippisF_xxxx__DS_21__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_21__bin.6 62.35944993 1.047120419 327 1023790 37.42 3441 SAMN40695570 SRR28523323 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_229__bin.10 CM_UNINA_FFOOD__FFOOD_229__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc carnosum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_21__bin.4 98.69109948 2.923211169 93 1699887 33.74 38634 SAMN40695570 SRR28523323 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__F02-18__bin.10 AlvarezOrdonezA_xxxx__F02-18__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Dellaglioa NA salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_27__bin.3 72.47021288 4.166666667 927 2623933 32.93 2941 SAMN40695571 SRR28523322 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 DeFilippisF_xxxx__DS_27__bin.3 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_27__bin.1 91.55709444 3.4914361 293 1841947 41.12 7893 SAMN40695571 SRR28523322 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 DeFilippisF_xxxx__DS_27__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_27__bin.14 98.89502762 2.946593002 63 2898765 33.09 343752 SAMN40695571 SRR28523322 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0167-001_Staphylococcus_succinus_BC15 MASTER_WP4_UNINA_1__SR008_71775__bin.14 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus succinus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_27__bin.11 93.50828729 3.360957643 380 2284295 36.44 8103 SAMN40695571 SRR28523322 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001703515.1_ASM170351v1_genomic GCF_001703515.1_ASM170351v1_genomic Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_27__bin.8 57.7 0 2748 7953199 36.35 3046 SAMN40695571 SRR28523322 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 DeFilippisF_xxxx__DS_27__bin.8 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_3__bin.3 82.65783842 1.76565008 152 1583713 36.75 16847 SAMN40695572 SRR28523321 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967741__bin.9 DeFilippisF_xxxx__DS_12__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc gasicomitatum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_3__bin.6 98.91304348 3.147644928 167 1722919 41.32 16002 SAMN40695572 SRR28523321 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 AlvarezOrdonezA_xxxx__C05-18__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_3__bin.5 95.2513652 2.072425829 71 1599817 33.73 39518 SAMN40695572 SRR28523321 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__F02-18__bin.10 AlvarezOrdonezA_xxxx__F02-18__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Dellaglioa NA salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_48__bin.12 80.17241379 1.724137931 199 2552931 32.65 20901 SAMN40695558 SRR28523132 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_48__bin.6 53.72923588 2.61627907 202 2054458 63.7 18848 SAMN40695558 SRR28523132 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_90__bin.4 DeFilippisF_xxxx__DS_90__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sandarakinum A salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_49__bin.5 87.55259467 0.815217391 88 1573708 42.11 25657 SAMN40695550 SRR28523141 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_49__bin.2 91.78360063 3.853754941 285 1920130 41.21 9492 SAMN40695550 SRR28523141 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 DeFilippisF_xxxx__DS_21__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_50__bin.12 99.0625 0 103 2358721 46.14 38612 SAMN40695540 SRR28523152 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 DeFilippisF_xxxx__DS_50__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_50__bin.10 86.06725629 1.358695652 221 1581051 42.12 10461 SAMN40695540 SRR28523152 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_50__bin.11 62.06896552 0 12 1248280 32.48 1022103 SAMN40695540 SRR28523152 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_50__bin.9 98.95287958 1.112565445 108 2257862 38.42 33435 SAMN40695540 SRR28523152 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_50__bin.1 81.42787768 4.679487179 501 2591906 42.99 6406 SAMN40695540 SRR28523152 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 182 DeFilippisF_xxxx__DS_50__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter cibarius A salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_50__bin.13 73.36652945 0 136 1077916 41.55 11662 SAMN40695540 SRR28523152 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 DeFilippisF_xxxx__DS_20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_51__bin.7 99.44444444 1.944444444 31 2886203 32.53 368917 SAMN40695573 SRR28523320 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_51__bin.3 99.47643979 0.589005236 55 2374094 38.22 95589 SAMN40695573 SRR28523320 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_51__bin.6 50 0 5 537927 36.47 333838 SAMN40695573 SRR28523320 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KharnaiorP_2023__SRR22859379__bin.8 DeFilippisF_xxxx__DF_7__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_51__bin.11 55.48362794 1.657458564 584 1732612 36.19 3075 SAMN40695573 SRR28523320 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001703515.1_ASM170351v1_genomic DeFilippisF_xxxx__DS_51__bin.11 Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_51__bin.2 99.40164547 1.570680628 31 1619350 37.13 183342 SAMN40695573 SRR28523320 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_229__bin.10 CM_UNINA_FFOOD__FFOOD_229__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc carnosum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_53__bin.7 73.432601880000007 1.724137931 202 1551108 42.24 9409 SAMN40695541 SRR28523151 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_53__bin.4 93.10606061 2.361111111 406 2897989 32.48 10963 SAMN40695541 SRR28523151 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_53__bin.1 86.16487455 0.555555556 7 2008187 32.44 1376904 SAMN40695541 SRR28523151 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_53__bin.5 50 0 10 726709 37.34 175500 SAMN40695541 SRR28523151 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_53__bin.8 70.97701149 0.862068966 34 1199942 41.26 53216 SAMN40695541 SRR28523151 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 AlvarezOrdonezA_xxxx__C05-18__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_55__bin.14 75.05747126 0 231 1757645 42.18 11156 SAMN40695564 SRR28523126 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_55__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_55__bin.11 98.58585859 1.916666667 392 3768475 32.54 18427 SAMN40695564 SRR28523126 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_55__bin.9 58.62068966 0 6 1114383 42.18 391734 SAMN40695564 SRR28523126 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 CM_UNINA_FFOOD__FFOOD_425__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_55__bin.8 98.34254144 1.104972376 56 2337495 34.59 82739 SAMN40695564 SRR28523126 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 178 178 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus carnosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_55__bin.2 85.23423423 1.945945946 653 2967289 37.04 5402 SAMN40695564 SRR28523126 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_55__bin.2 DeFilippisF_xxxx__DS_55__bin.2 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Psychromonadaceae;Psychromonas NA salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_56__bin.9 91.74595712 0.652173913 136 1547879 42.19 18159 SAMN40695580 SRR28523312 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_56__bin.14 97.77486911 0.654450262 72 2267027 38.34 64757 SAMN40695580 SRR28523312 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_56__bin.17 55.17241379 0 97 1009206 41.26 16050 SAMN40695580 SRR28523312 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 AlvarezOrdonezA_xxxx__C05-18__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_56__bin.13 50.87719298 0 5 660351 43.24 146726 SAMN40695580 SRR28523312 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_000420365.1_ASM42036v1_genomic GCF_000420365.1_ASM42036v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella halotolerans salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_56__bin.5 94.9167397 0.394390885 217 1691195 36.72 10101 SAMN40695580 SRR28523312 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_010306265.1_ASM1030626v1_genomic MASTER_WP4_UNINA_1__SS007_71775__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella sagaensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_57__bin.5 65.86206897 1.724137931 202 1545086 42.17 10289 SAMN40695559 SRR28523131 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_57__bin.3 89.50617284 0 6 1352772 41.97 315310 SAMN40695559 SRR28523131 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 CM_UNINA_FFOOD__FFOOD_425__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_57__bin.10 81.7679558 0.588130458 47 1762049 34.4 70761 SAMN40695559 SRR28523131 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 178 178 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus carnosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_57__bin.4 60.34482759 0 23 1115432 41 79834 SAMN40695559 SRR28523131 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 DeFilippisF_xxxx__DS_93__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_63__bin.2 55.17241379 0 54 1027241 42.16 26838 SAMN40695542 SRR28523150 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_63__bin.3 66.35802469 0.308641975 202 1208259 42.93 7256 SAMN40695542 SRR28523150 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 CM_UNINA_FFOOD__FFOOD_425__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_63__bin.4 56.89655172 0 7 857695 32.53 344726 SAMN40695542 SRR28523150 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_63__bin.14 51.72413793 0 19 682676 32.69 75661 SAMN40695542 SRR28523150 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_63__bin.5 74.7 0.1 2006 10239328 35.96 6200 SAMN40695542 SRR28523150 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_64__bin.17 92.83203125 2.916666667 144 2312469 46.25 26364 SAMN40695574 SRR28523319 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 DeFilippisF_xxxx__DS_64__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_64__bin.15 59.1954023 0 258 1451546 42.33 6977 SAMN40695574 SRR28523319 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_64__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_64__bin.13 99.33333333 1.962365591 60 2883735 32.62 103421 SAMN40695574 SRR28523319 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_64__bin.16 55.17241379 0 19 797464 37.48 59924 SAMN40695574 SRR28523319 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_64__bin.3 51.72413793 0 19 856646 36.09 224830 SAMN40695574 SRR28523319 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_64__bin.3 DeFilippisF_xxxx__DS_64__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus zhachilii salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_65__bin.3 91.13683128 3.137860082 222 2994510 44.64 26003 SAMN40695565 SRR28523125 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 AlvarezOrdonezA_xxxx__Q06-27__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_65__bin.5 92.67015707 0.589005236 50 2218828 38.29 88649 SAMN40695565 SRR28523125 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_66__bin.12 97.8125 4.322916667 212 2519882 46.1 16839 SAMN40695575 SRR28523318 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 DeFilippisF_xxxx__DS_64__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_66__bin.15 90.11699278 2.717391304 265 1861251 42.21 9192 SAMN40695575 SRR28523318 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_66__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_66__bin.4 54.17972832 2.586206897 432 1759798 44.35 4485 SAMN40695575 SRR28523318 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FranciosaI_2021__SRR12227952__bin.4 DeFilippisF_xxxx__DS_66__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraplantarum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_66__bin.1 80 0 13 1665560 32.46 1269992 SAMN40695575 SRR28523318 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_66__bin.9 97.1875 0.625 96 2167191 44.59 32986 SAMN40695575 SRR28523318 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_66__bin.5 73.82198953 0.065445026 33 1169017 38.09 80180 SAMN40695575 SRR28523318 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_66__bin.18 60.34482759 0 14 997767 41.21 92418 SAMN40695575 SRR28523318 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 DeFilippisF_xxxx__DS_20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_66__bin.7 91.73696319 2.45398773 181 1927592 36.75 20211 SAMN40695575 SRR28523318 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_010306265.1_ASM1030626v1_genomic MASTER_WP4_UNINA_1__SS007_71775__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella sagaensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_66__bin.17 94.67432303 2.850856991 33 2544453 37.6 138589 SAMN40695575 SRR28523318 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_69__bin.5 DeFilippisF_xxxx__DS_69__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus nodensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_66__bin.10 93.88405675 1.112565445 163 2244721 34 26778 SAMN40695575 SRR28523318 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434665.1_ASM143466v1_genomic DeFilippisF_xxxx__DS_66__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus tucceti salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_66__bin.21 50 0 24 866223 36.14 243666 SAMN40695575 SRR28523318 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_64__bin.3 DeFilippisF_xxxx__DS_64__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus zhachilii salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_68__bin.3 82.27281746 1.895833333 193 2248722 46.06 18339 SAMN40695576 SRR28523316 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 DeFilippisF_xxxx__DS_50__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_68__bin.13 99.07407407 2.983539095 133 2883516 44.91 30543 SAMN40695576 SRR28523316 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FontanaF_2023__SRR20746957__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_68__bin.24 58.62068966 0 7 1170354 42.01 381500 SAMN40695576 SRR28523316 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 CM_UNINA_FFOOD__FFOOD_425__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_68__bin.14 81.4173998 0.555555556 29 2039036 32.35 394067 SAMN40695576 SRR28523316 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_68__bin.4 74.86910995 0 23 1052252 38.17 85738 SAMN40695576 SRR28523316 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_68__bin.18 56.89655172 0 4 726733 33.97 530687 SAMN40695576 SRR28523316 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 178 178 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus carnosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_68__bin.16 98.95833333 0.227864583 27 2144340 49.57 114286 SAMN40695576 SRR28523316 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_003946095.1_ASM394609v1_genomic DeFilippisF_xxxx__DS_68__bin.16 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus lindianensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_68__bin.5 59.54022989 4.310344828 444 1547846 37.76 3896 SAMN40695576 SRR28523316 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_68__bin.5 DeFilippisF_xxxx__DS_68__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus NA salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_69__bin.6 91.6015625 3.4375 221 2147857 46.27 13092 SAMN40695543 SRR28523149 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 DeFilippisF_xxxx__DS_50__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_69__bin.21 97.82608696 0.543478261 51 2846472 46.37 93361 SAMN40695543 SRR28523149 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FalardeauJ_2023__SRR20811272__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_69__bin.8 90.2173913 1.902173913 156 2326749 42.88 20474 SAMN40695543 SRR28523149 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 DeFilippisF_xxxx__DS_69__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_69__bin.3 99.44444444 1.944444444 18 2773223 32.63 459565 SAMN40695543 SRR28523149 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_69__bin.11 51.98879552 1.260504202 362 1197787 59.39 3433 SAMN40695543 SRR28523149 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__KM-4D__bin.40 DeFilippisF_xxxx__DS_69__bin.11 Actinomycetota;Actinomycetes;Actinomycetales;Actinomycetaceae;Ancrocorticia Ancrocorticia populi salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_69__bin.20 99.33774834 0.662251656 136 2708185 36.46 36520 SAMN40695543 SRR28523149 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_2__bin.27 DeFilippisF_xxxx__DS_2__bin.27 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus koreensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_69__bin.13 91.22544052 0.17452007 160 2682564 34.77 29636 SAMN40695543 SRR28523149 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_003946015.1_ASM394601v1_genomic GCF_003946015.1_ASM394601v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus insicii salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_69__bin.5 98.35894838 0.17452007 78 2459769 37.62 46362 SAMN40695543 SRR28523149 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_69__bin.5 DeFilippisF_xxxx__DS_69__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus nodensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_69__bin.7 94.6008813 1.832460733 233 2529231 36.87 16750 SAMN40695543 SRR28523149 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_69__bin.7 DeFilippisF_xxxx__DS_69__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus NA salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_70__bin.5 51.72413793 3.448275862 90 1078444 42.18 19182 SAMN40695560 SRR28523130 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_70__bin.3 62.06896552 0 8 1229790 32.51 995685 SAMN40695560 SRR28523130 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_70__bin.1 56.89655172 0 2 737928 34 687159 SAMN40695560 SRR28523130 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 178 178 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus carnosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_70__bin.7 98.42931937 1.308900524 121 1686836 37.03 28757 SAMN40695560 SRR28523130 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_229__bin.10 CM_UNINA_FFOOD__FFOOD_229__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc carnosum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_71__bin.3 75.32141187 1.086956522 64 1130019 42.29 26456 SAMN40695566 SRR28523327 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_71__bin.7 97.08259847 0.602586714 136 1834015 42.28 20882 SAMN40695566 SRR28523327 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 CM_UNINA_FFOOD__FFOOD_425__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_71__bin.5 70.40977409 1.399037605 588 1717373 34.35 3055 SAMN40695566 SRR28523327 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 178 DeFilippisF_xxxx__DS_71__bin.5 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus carnosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_71__bin.1 96.00732075 1.086956522 65 1770283 41.14 45308 SAMN40695566 SRR28523327 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 DeFilippisF_xxxx__DS_93__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_72__bin.6 82.27506547 4.218106996 542 2564769 43.7 5698 SAMN40695551 SRR28523140 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FranciosaI_2021__SRR12227952__bin.4 DeFilippisF_xxxx__DS_72__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraplantarum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_72__bin.10 58.62068966 0 67 886098 37.24 22308 SAMN40695551 SRR28523140 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_72__bin.1 69.31034483 1.724137931 166 1535948 41.1 14633 SAMN40695551 SRR28523140 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 DeFilippisF_xxxx__DS_20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_78__bin.11 62.4137931 1.724137931 303 1580714 42.15 6590 SAMN40695552 SRR28523139 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_78__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_78__bin.21 98.76379691 0.662251656 108 2715398 36.34 50134 SAMN40695552 SRR28523139 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_2__bin.27 DeFilippisF_xxxx__DS_2__bin.27 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus koreensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_78__bin.18 97.2513089 1.047120419 36 1521349 37.26 186379 SAMN40695552 SRR28523139 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_229__bin.10 CM_UNINA_FFOOD__FFOOD_229__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc carnosum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_78__bin.5 99.13726994 0.122699387 44 1776315 39.19 83350 SAMN40695552 SRR28523139 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001437425.1_ASM143742v1_genomic DeFilippisF_xxxx__DS_78__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella minor salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_78__bin.1 58 1.2 3023 9141061 36.05 3252 SAMN40695552 SRR28523139 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 DeFilippisF_xxxx__DS_78__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_80__bin.5 92.53104022 2.486187845 205 2256711 34.45 15000 SAMN40695561 SRR28523129 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 178 178 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus carnosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_80__bin.3 93.93410853 3.682170543 299 3776935 63.77 19588 SAMN40695561 SRR28523129 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_90__bin.4 DeFilippisF_xxxx__DS_90__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sandarakinum A salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_81__bin.13 62.06896552 0 9 1211711 32.54 427634 SAMN40695544 SRR28523148 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_81__bin.2 59.06998158 0 19 914597 33.09 93505 SAMN40695544 SRR28523148 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0167-001_Staphylococcus_succinus_BC15 MASTER_WP4_UNINA_1__SR008_71775__bin.14 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus succinus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_82__bin.10 84.56540716 3.086419753 165 2452453 45.19 21780 SAMN40695567 SRR28523326 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FontanaF_2023__SRR20746957__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_82__bin.8 79.19517758 0.555555556 12 1960477 32.37 327365 SAMN40695567 SRR28523326 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_82__bin.9 93.71727749 0.589005236 39 2140445 38.2 95589 SAMN40695567 SRR28523326 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_82__bin.14 72.4137931 0.862068966 50 2399040 33.02 177483 SAMN40695567 SRR28523326 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0167-001_Staphylococcus_succinus_BC15 MASTER_WP4_UNINA_1__SR008_71775__bin.14 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus succinus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_82__bin.12 97.9 0.1 317 11551872 36.25 80282 SAMN40695567 SRR28523326 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_83__bin.13 95.73688272 0 14 1789785 42.21 301809 SAMN40695577 SRR28523315 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 CM_UNINA_FFOOD__FFOOD_425__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_83__bin.4 96.33507853 0.589005236 42 2221648 38.32 94854 SAMN40695577 SRR28523315 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_83__bin.6 64.13793103 0 159 2285177 32.91 20084 SAMN40695577 SRR28523315 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_83__bin.17 50 0 2 509965 36.5 333838 SAMN40695577 SRR28523315 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KharnaiorP_2023__SRR22859379__bin.8 DeFilippisF_xxxx__DF_7__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_83__bin.8 73.43426501 1.557971014 148 1152517 41.13 8581 SAMN40695577 SRR28523315 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 DeFilippisF_xxxx__DS_83__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_83__bin.1 60.34482759 1.724137931 21 1014034 32.88 104238 SAMN40695577 SRR28523315 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0167-001_Staphylococcus_succinus_BC15 MASTER_WP4_UNINA_1__SR008_71775__bin.14 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus succinus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_83__bin.12 92.4 0.5 726 11397312 36.23 22519 SAMN40695577 SRR28523315 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_84__bin.7 92.39130435 0 68 1651700 41.98 36426 SAMN40695568 SRR28523325 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_84__bin.4 83.97399925 2.777777778 317 2757940 44.53 11718 SAMN40695568 SRR28523325 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 DeFilippisF_xxxx__DS_110__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_84__bin.1 98.95287958 0.763525305 85 2275653 38.3 43166 SAMN40695568 SRR28523325 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_87__bin.3 94.20043199 2.463768116 154 1681746 42.08 15825 SAMN40695581 SRR28523311 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_87__bin.1 62.06896552 0 6 1231190 32.43 1021983 SAMN40695581 SRR28523311 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_87__bin.4 99.77477477 0.15015015 67 3146418 69.08 88597 SAMN40695581 SRR28523311 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_2__P2570__bin.32 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_87__bin.2 70.40229885 0 76 1100509 41.36 18622 SAMN40695581 SRR28523311 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 AlvarezOrdonezA_xxxx__C05-18__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_87__bin.5 78.66492147 1.047120419 45 1376640 37.32 60423 SAMN40695581 SRR28523311 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_229__bin.10 CM_UNINA_FFOOD__FFOOD_229__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc carnosum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_89__bin.1 99.44444444 1.388888889 21 2771738 32.78 268782 SAMN40695582 SRR28523310 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_89__bin.5 97.68211921 0.993377483 316 2840286 36.3 18061 SAMN40695582 SRR28523310 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_2__bin.27 DeFilippisF_xxxx__DS_2__bin.27 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus koreensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_90__bin.3 98.96057348 3.333333333 53 2806475 32.63 102380 SAMN40695583 SRR28523309 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_90__bin.9 69.82758621 4.310344828 571 2732521 32.9 6324 SAMN40695583 SRR28523309 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_90__bin.5 93.97905759 1.880057116 82 1462674 37.37 29035 SAMN40695583 SRR28523309 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_229__bin.10 CM_UNINA_FFOOD__FFOOD_229__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc carnosum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_90__bin.4 100 0 54 4072651 63.44 112319 SAMN40695583 SRR28523309 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_90__bin.4 DeFilippisF_xxxx__DS_90__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sandarakinum A salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_91__bin.24 84.2998306 1.268115942 253 1249648 42.39 5998 SAMN40695578 SRR28523314 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_91__bin.11 98.7654321 2.777777778 65 2963150 44.69 70139 SAMN40695578 SRR28523314 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_91__bin.17 93.33333333 1.944444444 45 2778776 32.55 205692 SAMN40695578 SRR28523314 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_91__bin.15 99.47643979 1.112565445 83 2369880 38.25 57923 SAMN40695578 SRR28523314 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_91__bin.26 55.17241379 0 159 974709 41.42 8916 SAMN40695578 SRR28523314 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 AlvarezOrdonezA_xxxx__C05-18__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_91__bin.2 87.24677716 1.841620626 506 2159837 36.47 5037 SAMN40695578 SRR28523314 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001703515.1_ASM170351v1_genomic DeFilippisF_xxxx__DS_91__bin.2 Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_91__bin.13 53.40314136 0.17452007 28 1183388 33.89 80145 SAMN40695578 SRR28523314 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__F02-18__bin.10 AlvarezOrdonezA_xxxx__F02-18__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Dellaglioa NA salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_91__bin.14 83.29038922 1.894977169 438 2038083 41.84 5399 SAMN40695578 SRR28523314 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__R04-18__bin.10 DeFilippisF_xxxx__DS_91__bin.14 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter harbinensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_91__bin.4 98.42931937 1.047120419 112 2739224 34.95 44719 SAMN40695578 SRR28523314 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_003946015.1_ASM394601v1_genomic GCF_003946015.1_ASM394601v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus insicii salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_93__bin.4 95.16546639 0 50 1749069 42.36 57792 SAMN40695553 SRR28523138 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 CM_UNINA_FFOOD__FFOOD_425__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_93__bin.1 50 0 5 537591 36.46 333838 SAMN40695553 SRR28523138 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KharnaiorP_2023__SRR22859379__bin.8 DeFilippisF_xxxx__DF_7__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_93__bin.8 99.37888199 1.29076087 61 1934653 41 50139 SAMN40695553 SRR28523138 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 DeFilippisF_xxxx__DS_93__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_97__bin.3 91.01767651 0.815217391 178 1741025 42.11 13779 SAMN40695584 SRR28523308 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_97__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_97__bin.9 90.99986065 3.455615942 410 2453955 46.68 7647 SAMN40695584 SRR28523308 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 DeFilippisF_xxxx__DS_97__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_97__bin.14 97.30639731 3.600823045 212 2804533 44.95 19065 SAMN40695584 SRR28523308 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_97__bin.11 76.91350592 3.642384106 671 2273907 35.26 3707 SAMN40695584 SRR28523308 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 DeFilippisF_xxxx__DS_97__bin.11 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_97__bin.17 57.06806283 0 29 950612 37.25 58516 SAMN40695584 SRR28523308 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_97__bin.2 86.85204753 3.37396978 602 2561296 42.04 4933 SAMN40695584 SRR28523308 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 181 DeFilippisF_xxxx__DS_97__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter sp014861395 salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_97__bin.15 58.62068966 0 23 774166 46.06 50277 SAMN40695584 SRR28523308 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 DeFilippisF_xxxx__DS_64__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_97__bin.16 94.12803532 1.986754967 123 2322441 36.72 40040 SAMN40695584 SRR28523308 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_2__bin.27 DeFilippisF_xxxx__DS_97__bin.16 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus koreensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_97__bin.13 76.05757919 2.542440108 303 1247829 37.54 4902 SAMN40695584 SRR28523308 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_229__bin.10 CM_UNINA_FFOOD__FFOOD_229__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc carnosum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_97__bin.10 82.36158799 1.780821918 457 2097813 42.08 5319 SAMN40695584 SRR28523308 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__R04-18__bin.10 DeFilippisF_xxxx__DS_97__bin.10 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter harbinensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_98__bin.1 68.96551724 0 7 1430094 42.23 381500 SAMN40695579 SRR28523313 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 CM_UNINA_FFOOD__FFOOD_425__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_98__bin.17 86.66666667 0.555555556 7 2024632 32.46 1375952 SAMN40695579 SRR28523313 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_98__bin.5 99.47643979 0.589005236 75 2255579 38.35 56740 SAMN40695579 SRR28523313 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks DeFilippisF_xxxx__DS_98__bin.11 69.06077348 0 13 1283117 34.12 243082 SAMN40695579 SRR28523313 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 178 178 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus carnosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__FI009_71775__bin.3 50 0 41 985475 42.06 53959 SAMN40695716 SRR28523289 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_2__P2599__bin.20 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__FI009_71775__bin.7 67.46073298 0.261780105 327 2263920 44.63 8313 SAMN40695716 SRR28523289 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__FI009_71775__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__FI009_71775__bin.16 50 0 3 711607 41.21 598545 SAMN40695716 SRR28523289 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 CM_UNINA_FFOOD__FFOOD_425__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__FI009_71775__bin.1 81.11111111 0.555555556 20 1930009 32.4 166697 SAMN40695716 SRR28523289 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__FI010_71775__bin.14 96.83321345 3.20754717 194 2237527 35.59 17050 SAMN40695715 SRR28523291 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__FI010_71775__bin.29 91.44021739 3.007246377 385 2440066 42.8 7730 SAMN40695715 SRR28523291 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LandisEA_2021__SRS5653333__bin.1 MASTER_WP4_UNINA_1__FI010_71775__bin.29 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__FI010_71775__bin.12 99.38271605 3.086419753 70 2941901 44.13 78545 SAMN40695715 SRR28523291 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FranciosaI_2021__SRR12227952__bin.4 MASTER_WP4_UNINA_1__FI010_71775__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraplantarum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__FI010_71775__bin.13 92.59557945 2.5 328 2845814 32.52 13220 SAMN40695715 SRR28523291 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__FI010_71775__bin.7 97.8125 0 100 2163197 44.6 29351 SAMN40695715 SRR28523291 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_30__bin.3 DeFilippisF_xxxx__DF_30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus buchneri salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__FI010_71775__bin.31 51.72413793 0 16 657725 37.08 99461 SAMN40695715 SRR28523291 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__FI010_71775__bin.28 93.42684659 0.833333333 55 2186257 49.44 52869 SAMN40695715 SRR28523291 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_003946095.1_ASM394609v1_genomic MASTER_WP4_UNINA_1__CM008_71775__bin.21 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus lindianensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__FI010_71775__bin.11 78.30265849 0.429447853 152 1372283 37.01 13059 SAMN40695715 SRR28523291 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_010306265.1_ASM1030626v1_genomic MASTER_WP4_UNINA_1__SS007_71775__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella sagaensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__FI010_71775__bin.21 92.38163598 1.047120419 77 2407845 35.29 79445 SAMN40695715 SRR28523291 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__FI010_71775__bin.21 MASTER_WP4_UNINA_1__FI010_71775__bin.21 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus alimentarius salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__FI010_71775__bin.6 60.39980961 0 19 1715435 37.84 166333 SAMN40695715 SRR28523291 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_69__bin.5 DeFilippisF_xxxx__DS_69__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus nodensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__FI010_71775__bin.17 83.18062827 1.287085515 53 1368645 33.97 57686 SAMN40695715 SRR28523291 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434665.1_ASM143466v1_genomic DeFilippisF_xxxx__DS_66__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus tucceti salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__FI010_71775__bin.25 92.6597582 1.468048359 564 3383951 68.67 7915 SAMN40695715 SRR28523291 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__FI010_71775__bin.25 MASTER_WP4_UNINA_1__FI010_71775__bin.25 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Micropruina Micropruina glycogenica salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__FI109_71775__bin.2 91.85252204 1.086956522 122 1464297 42.32 14382 SAMN40695717 SRR28523288 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__FI109_71775__bin.4 84.49820789 0.138888889 102 2152947 32.66 42451 SAMN40695717 SRR28523288 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__FI109_71775__bin.6 88.5643294 1.990498034 476 2352618 72.42 6307 SAMN40695717 SRR28523288 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB16-22__bin.17 MASTER_WP4_UNINA_1__FI109_71775__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Nesterenkonia Nesterenkonia halobia salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__FI109_71775__bin.5 51.88087774 0 249 1925993 64.05 8856 SAMN40695717 SRR28523288 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_90__bin.4 DeFilippisF_xxxx__DS_90__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sandarakinum A salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__FI109_71775__bin.7 79.65116279 1.889534884 205 3188558 62.82 22904 SAMN40695717 SRR28523288 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__575_CabotClothbound__bin.6 DeFilippisF_xxxx__DS_110__bin.15 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__FI109_71775__bin.14 87.63565891 1.162790698 157 3301219 63.4 30363 SAMN40695717 SRR28523288 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__FI109_71775__bin.14 MASTER_WP4_UNINA_1__FI109_71775__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp030457025 salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SA009_71775__bin.2 55.79450418 0.555555556 36 1160965 32.8 66916 SAMN40695726 SRR28523278 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SA009_71775__bin.11 82.22222222 4.601851852 640 2632332 32.37 4792 SAMN40695726 SRR28523278 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SA009_71775__bin.26 98.94894895 0.225225225 91 3049983 69.21 52495 SAMN40695726 SRR28523278 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_2__P2570__bin.32 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SA009_71775__bin.9 52.01149425 0.862068966 391 1747142 38.4 5491 SAMN40695726 SRR28523278 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SA009_71775__bin.7 58.62068966 1.724137931 298 1680384 36.43 7124 SAMN40695726 SRR28523278 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001703515.1_ASM170351v1_genomic GCF_001703515.1_ASM170351v1_genomic Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SA009_71775__bin.29 84.29319372 1.320722851 22 1299129 37.41 149348 SAMN40695726 SRR28523278 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_229__bin.10 CM_UNINA_FFOOD__FFOOD_229__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc carnosum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SA009_71775__bin.13 51.72413793 0 22 721453 35.02 61474 SAMN40695726 SRR28523278 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__FI010_71775__bin.21 MASTER_WP4_UNINA_1__FI010_71775__bin.21 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus alimentarius salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SA009_71775__bin.15 70.03940974 1.138433515 495 1885727 35.2 4305 SAMN40695726 SRR28523278 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__SA009_71775__bin.15 MASTER_WP4_UNINA_1__SA009_71775__bin.15 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Carnobacterium Carnobacterium divergens salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SA009_71775__bin.18 96.3 0.3 547 11696404 36.26 38237 SAMN40695726 SRR28523278 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SC012_71775__bin.16 87.66904049 3.086419753 160 1562019 37.14 14982 SAMN40695727 SRR28523277 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KharnaiorP_2023__SRR22859379__bin.8 FranciosaI_2021__SRR12227963__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SC012_71775__bin.4 71.66666667 0.555555556 10 1821256 32.35 438937 SAMN40695727 SRR28523277 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SC012_71775__bin.18 99.59044369 1.023890785 53 4495121 65.06 130345 SAMN40695727 SRR28523277 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__SC012_71775__bin.18 MASTER_WP4_UNINA_1__SC012_71775__bin.18 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Sphingobium Sphingobium yanoikuyae A salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SC012_71775__bin.14 74.13793103 0 403 3625310 63.11 13225 SAMN40695727 SRR28523277 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__VB-03-M6__bin.13 MASTER_WP4_UNINA_1__SC012_71775__bin.14 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Cobetia Cobetia marina salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SC012_71775__bin.8 72.25851309 1.336746303 777 2742876 63.88 4039 SAMN40695727 SRR28523277 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__SC012_71775__bin.8 MASTER_WP4_UNINA_1__SC012_71775__bin.8 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Sphingobium Sphingobium sp002312805 salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SC012_71775__bin.17 94.4 0.2 929 28866437 48.87 51855 SAMN40695727 SRR28523277 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__SP009_71775__bin.32 MASTER_WP4_UNINA_1__SP009_71775__bin.32 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium nalgiovense salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SC012_71775__bin.9 98.7 0.1 339 11765490 36.25 69643 SAMN40695727 SRR28523277 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SC109_71775__bin.22 90.9356737 3.229166667 205 2067267 46.36 12681 SAMN40695728 SRR28523276 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 DeFilippisF_xxxx__DS_50__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SC109_71775__bin.18 55.17241379 0 403 1965047 32.51 5944 SAMN40695728 SRR28523276 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 MASTER_WP4_UNINA_1__SC109_71775__bin.18 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SC109_71775__bin.17 59.80861244 0 94 1302527 69.1 32169 SAMN40695728 SRR28523276 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 MASTER_WP4_CSIC_2__P2570__bin.32 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SC109_71775__bin.32 98.95287958 0.589005236 58 2247105 38.3 65134 SAMN40695728 SRR28523276 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SC109_71775__bin.12 71.55172414 0 203 2550561 32.93 21854 SAMN40695728 SRR28523276 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SC109_71775__bin.37 74.79326323 4.143646409 490 2123479 34.21 4979 SAMN40695728 SRR28523276 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 178 178 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus carnosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SC109_71775__bin.11 89.3018018 3.603603604 540 3214645 66.05 7884 SAMN40695728 SRR28523276 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_2__bin.17 MASTER_WP4_UNINA_1__SC109_71775__bin.11 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium NA salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SC109_71775__bin.8 76.17801047 0.523560209 48 938008 33.38 33017 SAMN40695728 SRR28523276 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__F02-18__bin.10 AlvarezOrdonezA_xxxx__F02-18__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Dellaglioa NA salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SC109_71775__bin.23 61.78010471 1.047120419 14 1041587 35.47 148659 SAMN40695728 SRR28523276 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__FI010_71775__bin.21 MASTER_WP4_UNINA_1__FI010_71775__bin.21 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus alimentarius salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SC109_71775__bin.25 97.3 0.2 293 11533795 36.25 100346 SAMN40695728 SRR28523276 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SF007_71775__bin.14 94.2157688 0.617283951 72 1734011 42.41 33128 SAMN40695709 SRR28523063 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 CM_UNINA_FFOOD__FFOOD_425__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SF007_71775__bin.18 50 0 2 507773 36.51 331478 SAMN40695709 SRR28523063 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KharnaiorP_2023__SRR22859379__bin.8 DeFilippisF_xxxx__DF_7__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SF009_71775__bin.8 60.31062767 1.587301587 341 1037399 38.03 3292 SAMN40695712 SRR28523294 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_UNINA_1__SF009_71775__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SF009_71775__bin.13 62.48207885 0 190 1379194 32.64 10193 SAMN40695712 SRR28523294 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SF009_71775__bin.2 68.10344828 0 99 2059742 32.84 36130 SAMN40695712 SRR28523294 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SF011_73417__bin.10 78.62778 1.105072464 199 1522451 42.17 9617 SAMN40695710 SRR28523062 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SF011_73417__bin.8 95.19650655 0.342066958 98 1595815 39.09 23197 SAMN40695710 SRR28523062 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SF011_73417__bin.14 62.06896552 0 4 1042087 32.51 837364 SAMN40695710 SRR28523062 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SF011_73417__bin.4 53.44827586 0 22 991601 41.08 73266 SAMN40695710 SRR28523062 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 AlvarezOrdonezA_xxxx__C05-18__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SF013_71775__bin.7 60.68965517 0 171 1581456 41.92 11429 SAMN40695711 SRR28523061 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_UNINA_1__SF013_71775__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SF013_71775__bin.3 91.14178477 1.739892183 307 2129123 34.96 9552 SAMN40695711 SRR28523061 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SF013_71775__bin.2 95.86606809 1.975308642 201 2775030 44.87 18852 SAMN40695711 SRR28523061 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SF013_71775__bin.26 86.03225806 1.388888889 166 2277833 32.97 40116 SAMN40695711 SRR28523061 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 YangC_2021__SRR13259378__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SF013_71775__bin.27 50 0 4 701345 41.16 493752 SAMN40695711 SRR28523061 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 CM_UNINA_FFOOD__FFOOD_425__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SF013_71775__bin.12 80.82437276 1.851851852 23 2018844 32.42 208595 SAMN40695711 SRR28523061 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SF013_71775__bin.18 81.03448276 0.862068966 83 2286287 33.07 59713 SAMN40695711 SRR28523061 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SF013_71775__bin.19 98.27586207 2.507836991 236 2646413 64.28 16555 SAMN40695711 SRR28523061 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__575_CabotClothbound__bin.2 WolfeBE_2014__575_CabotClothbound__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia sp030454085 salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SF013_71775__bin.21 90.9 0.2 929 27887940 49.6 101238 SAMN40695711 SRR28523061 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__SF013_71775__bin.21 MASTER_WP4_UNINA_1__SF013_71775__bin.21 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium salamii salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SF013_71775__bin.23 92.5 1.9 625 29119355 48.8 93229 SAMN40695711 SRR28523061 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__SP009_71775__bin.32 MASTER_WP4_UNINA_1__SP009_71775__bin.32 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium nalgiovense salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SF013_71775__bin.25 91.2 1.3 189 23249698 52.24 198231 SAMN40695711 SRR28523061 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_105__bin.8 DeFilippisF_xxxx__DS_105__bin.8 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;unknown unknown salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SF013_71775__bin.13 89.8 0.4 1217 11634788 36.21 13309 SAMN40695711 SRR28523061 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 MASTER_WP4_UNINA_1__GO005_71775__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SG007_71775__bin.1 53.08777429 0 166 1432109 42.76 10688 SAMN40695724 SRR28523281 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 CM_UNINA_FFOOD__FFOOD_425__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SP009_71775__bin.26 92.83684716 0.22296544 415 2644562 46.49 8214 SAMN40695713 SRR28523293 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MASTER_WP4_UNINA_1__SP009_71775__bin.26 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SP009_71775__bin.30 99.38271605 2.777777778 70 3003728 44.8 73686 SAMN40695713 SRR28523293 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SP009_71775__bin.31 81.54040404 4.925925926 602 1936267 32.63 3594 SAMN40695713 SRR28523293 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_UNINA_1__SP009_71775__bin.31 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SP009_71775__bin.6 85.80246914 0 6 1216001 41.88 315310 SAMN40695713 SRR28523293 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 CM_UNINA_FFOOD__FFOOD_425__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SP009_71775__bin.20 88.41059603 0.441501104 84 2473994 64.22 59025 SAMN40695713 SRR28523293 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__575_CabotClothbound__bin.2 WolfeBE_2014__575_CabotClothbound__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia sp030454085 salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SP009_71775__bin.33 61.20689655 1.724137931 169 2428923 33.12 37444 SAMN40695713 SRR28523293 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_112 MAG_112 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus nepalensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SP009_71775__bin.28 70.39594843 0.43664231 55 1375077 34.36 42979 SAMN40695713 SRR28523293 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. 178 178 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus carnosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SP009_71775__bin.32 95.2 0.1 455 28862462 48.86 159923 SAMN40695713 SRR28523293 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__SP009_71775__bin.32 MASTER_WP4_UNINA_1__SP009_71775__bin.32 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium nalgiovense salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SP009_71775__bin.13 95.6 0.2 458 11508054 36.28 42932 SAMN40695713 SRR28523293 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 SternesPR_2017__Control1_A_shotgun__bin.2 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SP109_71775__bin.11 72.78474399 0 163 1709815 41.92 14326 SAMN40695714 SRR28523292 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 DeFilippisF_xxxx__DS_84__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SP109_71775__bin.15 70.73416965 4.462962963 578 1901809 32.79 3644 SAMN40695714 SRR28523292 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YangC_2021__SRR13259378__bin.4 MASTER_WP4_UNINA_1__SP109_71775__bin.15 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus equorum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SP109_71775__bin.34 77.77777778 0 12 1670717 32.46 856635 SAMN40695714 SRR28523292 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811285__bin.2 FalardeauJ_2023__SRR20811285__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus xylosus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SP109_71775__bin.9 87.39060489 1.441441441 576 2654593 69.27 5715 SAMN40695714 SRR28523292 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2570__bin.32 AlvarezOrdonezA_xxxx__Q01-30__bin.11 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium sp030450335 salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SP109_71775__bin.6 99.47643979 0.938045375 44 2284437 38.28 106985 SAMN40695714 SRR28523292 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SP109_71775__bin.17 54.02298851 0 415 3989373 66.14 16619 SAMN40695714 SRR28523292 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. C-R14.bin.10 MASTER_WP4_UNINA_1__SP109_71775__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium Brevibacterium sp021023135 salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SP109_71775__bin.29 89.11821705 2.228682171 492 3750447 65.78 11080 SAMN40695714 SRR28523292 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__SP109_71775__bin.29 MASTER_WP4_UNINA_1__SP109_71775__bin.29 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SP109_71775__bin.22 91.8 4.5 1341 23625358 52.51 32378 SAMN40695714 SRR28523292 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_105__bin.8 DeFilippisF_xxxx__DS_105__bin.8 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;unknown unknown salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SR008_71775__bin.24 53.76242261 0.918273646 43 986466 35.45 28773 SAMN40695729 SRR28523275 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_1__SR008_71775__bin.24 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SR008_71775__bin.20 75.11037528 0.022075055 207 1302747 35.72 8375 SAMN40695729 SRR28523275 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q05-22__bin.4 DeFilippisF_xxxx__DS_110__bin.19 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SR008_71775__bin.21 97.105477 0.716206433 337 4387766 65.08 18035 SAMN40695729 SRR28523275 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__SC012_71775__bin.18 MASTER_WP4_UNINA_1__SC012_71775__bin.18 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Sphingobium Sphingobium yanoikuyae A salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SR008_71775__bin.19 54.43845684 0.457875458 25 1477171 43.08 73962 SAMN40695729 SRR28523275 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS01-22__bin.24 MASTER_WP4_UNINA_1__SR008_71775__bin.19 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter aquimaris salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SR008_71775__bin.25 60.34482759 0 21 1091015 41.27 64710 SAMN40695729 SRR28523275 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 AlvarezOrdonezA_xxxx__C05-18__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SR008_71775__bin.14 96.2962963 1.990740741 50 2608255 33.18 130088 SAMN40695729 SRR28523275 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0167-001_Staphylococcus_succinus_BC15 MASTER_WP4_UNINA_1__SR008_71775__bin.14 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus succinus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SR008_71775__bin.6 86.82119205 4.635761589 168 2407109 36.33 30140 SAMN40695729 SRR28523275 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_2__bin.27 DeFilippisF_xxxx__DS_2__bin.27 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus koreensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SR008_71775__bin.27 93.73766624 3.209459459 409 3078227 66.05 10368 SAMN40695729 SRR28523275 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_2__bin.17 MASTER_WP4_UNINA_1__SR008_71775__bin.27 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium NA salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SR008_71775__bin.17 53.44827586 0 289 1293742 36.46 5145 SAMN40695729 SRR28523275 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001703515.1_ASM170351v1_genomic We2_bin.full.40 Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SR008_71775__bin.1 98.13014211 1.047120419 30 1575578 37.27 125360 SAMN40695729 SRR28523275 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_229__bin.10 CM_UNINA_FFOOD__FFOOD_229__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc carnosum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SR008_71775__bin.11 54.53689168 0.137362637 32 1368798 43.93 71115 SAMN40695729 SRR28523275 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746954__bin.5 MASTER_WP4_UNINA_1__SR008_71775__bin.11 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Psychrobacter Psychrobacter faecalis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SR008_71775__bin.18 95.36423841 0.022075055 89 1996989 37.05 38913 SAMN40695729 SRR28523275 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__C05-18__bin.5 AlvarezOrdonezA_xxxx__C05-18__bin.5 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus sp030462125 salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SR008_71775__bin.23 97.56554307 2.372034956 40 2612034 40.42 155245 SAMN40695729 SRR28523275 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__SR008_71775__bin.23 MASTER_WP4_UNINA_1__SR008_71775__bin.23 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_A Enterococcus A viikkiensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SS007_71775__bin.9 68.10344828 0 346 1668701 38.53 5445 SAMN40695730 SRR28523274 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001434295.1_ASM143429v1_genomic GCF_001434295.1_ASM143429v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus versmoldensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SS007_71775__bin.8 80.07168459 3.185185185 20 1864825 32.8 283829 SAMN40695730 SRR28523274 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus saprophyticus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SS007_71775__bin.25 50 0 4 518988 36.45 333838 SAMN40695730 SRR28523274 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KharnaiorP_2023__SRR22859379__bin.8 DeFilippisF_xxxx__DF_7__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SS007_71775__bin.6 63.58695652 0 26 1112866 40.94 73266 SAMN40695730 SRR28523274 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072 AlvarezOrdonezA_xxxx__C05-18__bin.17 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus sakei salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SS007_71775__bin.1 68.10344828 0 148 2925714 32.73 42786 SAMN40695730 SRR28523274 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0167-001_Staphylococcus_succinus_BC15 MASTER_WP4_UNINA_1__SR008_71775__bin.14 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus succinus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__SS007_71775__bin.14 97.54601227 0 73 1632436 36.71 36531 SAMN40695730 SRR28523274 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_010306265.1_ASM1030626v1_genomic MASTER_WP4_UNINA_1__SS007_71775__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella sagaensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__ST007_71775__bin.12 70.68965517 3.448275862 168 1506424 42.41 12283 SAMN40695725 SRR28523280 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_2__P2599__bin.20 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__ST007_71775__bin.36 53.94474011 3.076511503 235 1344953 36.09 7157 SAMN40695725 SRR28523280 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967741__bin.9 DeFilippisF_xxxx__DS_12__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc gasicomitatum salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__ST007_71775__bin.7 94.69943163 2.254689755 427 4442588 59.17 14122 SAMN40695725 SRR28523280 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__ST007_71775__bin.7 MASTER_WP4_UNINA_1__ST007_71775__bin.7 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E paraversuta salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__ST007_71775__bin.34 91.83645269 1.047120419 71 2198825 37.49 43487 SAMN40695725 SRR28523280 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DS_69__bin.5 MASTER_WP4_UNINA_1__ST007_71775__bin.34 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus nodensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks MASTER_WP4_UNINA_1__ST007_71775__bin.2 98.30246914 2.386831276 204 2676342 45.68 18107 SAMN40695725 SRR28523280 Italy PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__ST007_71775__bin.2 MASTER_WP4_UNINA_1__ST007_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraxiangfangensis salami salami Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks EinsonEJ_2018__SRS2706106__bin.3 81.11665461 2.430555556 535 1891091 34.56 3949 SRS2706106 SRR6313184 USA PRJNA336518 SRP082330 NCBI Einson, J.E., Rani, A., You, X., Rodriguez, A.A., Randell, C.L., Barnaba, T., Mammel, M.K., Kotewicz, M.L., Elkins, C.A., and Sela, D.A. (2018). A Vegetable Fermentation Facility Hosts Distinct Microbiomes Reflecting the Production Environment. Appl. Environ. Microbiol. 84. 10.1128/AEM.01680-18. MAG_501 EinsonEJ_2018__SRS2706106__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks EinsonEJ_2018__SRS2706106__bin.2 98.57096309 0.440917108 154 2113193 37.64 31155 SRS2706106 SRR6313184 USA PRJNA336518 SRP082330 NCBI Einson, J.E., Rani, A., You, X., Rodriguez, A.A., Randell, C.L., Barnaba, T., Mammel, M.K., Kotewicz, M.L., Elkins, C.A., and Sela, D.A. (2018). A Vegetable Fermentation Facility Hosts Distinct Microbiomes Reflecting the Production Environment. Appl. Environ. Microbiol. 84. 10.1128/AEM.01680-18. GCF_009913915.1_ASM991391v1_genomic MortensenS_xxxx__WK054-2-L-08h-04E9_S16__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks EinsonEJ_2018__SRS2706106__bin.1 90.8436214 2.983539095 245 1980924 45.3 10714 SRS2706106 SRR6313184 USA PRJNA336518 SRP082330 NCBI Einson, J.E., Rani, A., You, X., Rodriguez, A.A., Randell, C.L., Barnaba, T., Mammel, M.K., Kotewicz, M.L., Elkins, C.A., and Sela, D.A. (2018). A Vegetable Fermentation Facility Hosts Distinct Microbiomes Reflecting the Production Environment. Appl. Environ. Microbiol. 84. 10.1128/AEM.01680-18. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks EinsonEJ_2018__SRS2706106__bin.9 50.078125 1.0625 120 659629 46.42 6485 SRS2706106 SRR6313184 USA PRJNA336518 SRP082330 NCBI Einson, J.E., Rani, A., You, X., Rodriguez, A.A., Randell, C.L., Barnaba, T., Mammel, M.K., Kotewicz, M.L., Elkins, C.A., and Sela, D.A. (2018). A Vegetable Fermentation Facility Hosts Distinct Microbiomes Reflecting the Production Environment. Appl. Environ. Microbiol. 84. 10.1128/AEM.01680-18. MotaGutierrezJ_2021__SRR11602150__bin.9 EinsonEJ_2018__SRS2706106__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks EinsonEJ_2018__SRS2706107__bin.2 57.04412547 0 484 1430626 37.32 3114 SRS2706107 SRR6313183 USA PRJNA336518 SRP082330 NCBI Einson, J.E., Rani, A., You, X., Rodriguez, A.A., Randell, C.L., Barnaba, T., Mammel, M.K., Kotewicz, M.L., Elkins, C.A., and Sela, D.A. (2018). A Vegetable Fermentation Facility Hosts Distinct Microbiomes Reflecting the Production Environment. Appl. Environ. Microbiol. 84. 10.1128/AEM.01680-18. GCF_009913915.1_ASM991391v1_genomic EinsonEJ_2018__SRS2706107__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks EinsonEJ_2018__SRS2706107__bin.5 78.92512442 4.113828502 614 2232465 46.95 4149 SRS2706107 SRR6313183 USA PRJNA336518 SRP082330 NCBI Einson, J.E., Rani, A., You, X., Rodriguez, A.A., Randell, C.L., Barnaba, T., Mammel, M.K., Kotewicz, M.L., Elkins, C.A., and Sela, D.A. (2018). A Vegetable Fermentation Facility Hosts Distinct Microbiomes Reflecting the Production Environment. Appl. Environ. Microbiol. 84. 10.1128/AEM.01680-18. CM_UNINA_FFOOD__FFOOD_337__bin.6 EinsonEJ_2018__SRS2706107__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks EinsonEJ_2018__SRS2706108__bin.2 70.98052953 0.473484848 467 1507677 35.19 3484 SRS2706108 SRR6313182 USA PRJNA336518 SRP082330 NCBI Einson, J.E., Rani, A., You, X., Rodriguez, A.A., Randell, C.L., Barnaba, T., Mammel, M.K., Kotewicz, M.L., Elkins, C.A., and Sela, D.A. (2018). A Vegetable Fermentation Facility Hosts Distinct Microbiomes Reflecting the Production Environment. Appl. Environ. Microbiol. 84. 10.1128/AEM.01680-18. MAG_501 EinsonEJ_2018__SRS2706108__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks EinsonEJ_2018__SRS2706108__bin.6 91.00529101 0.793650794 57 1641573 37.63 66457 SRS2706108 SRR6313182 USA PRJNA336518 SRP082330 NCBI Einson, J.E., Rani, A., You, X., Rodriguez, A.A., Randell, C.L., Barnaba, T., Mammel, M.K., Kotewicz, M.L., Elkins, C.A., and Sela, D.A. (2018). A Vegetable Fermentation Facility Hosts Distinct Microbiomes Reflecting the Production Environment. Appl. Environ. Microbiol. 84. 10.1128/AEM.01680-18. GCF_009913915.1_ASM991391v1_genomic MortensenS_xxxx__WK054-2-L-08h-04E9_S16__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks EinsonEJ_2018__SRS2706108__bin.7 87.03703704 3.652263374 262 2151161 45.4 11188 SRS2706108 SRR6313182 USA PRJNA336518 SRP082330 NCBI Einson, J.E., Rani, A., You, X., Rodriguez, A.A., Randell, C.L., Barnaba, T., Mammel, M.K., Kotewicz, M.L., Elkins, C.A., and Sela, D.A. (2018). A Vegetable Fermentation Facility Hosts Distinct Microbiomes Reflecting the Production Environment. Appl. Environ. Microbiol. 84. 10.1128/AEM.01680-18. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks EinsonEJ_2018__SRS2706109__bin.5 68.67179334 2.398989899 522 1716105 34.57 3573 SRS2706109 SRR6313181 USA PRJNA336518 SRP082330 NCBI Einson, J.E., Rani, A., You, X., Rodriguez, A.A., Randell, C.L., Barnaba, T., Mammel, M.K., Kotewicz, M.L., Elkins, C.A., and Sela, D.A. (2018). A Vegetable Fermentation Facility Hosts Distinct Microbiomes Reflecting the Production Environment. Appl. Environ. Microbiol. 84. 10.1128/AEM.01680-18. MAG_501 EinsonEJ_2018__SRS2706109__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks EinsonEJ_2018__SRS2706109__bin.8 59.64912281 0 64 1265948 37.52 61415 SRS2706109 SRR6313181 USA PRJNA336518 SRP082330 NCBI Einson, J.E., Rani, A., You, X., Rodriguez, A.A., Randell, C.L., Barnaba, T., Mammel, M.K., Kotewicz, M.L., Elkins, C.A., and Sela, D.A. (2018). A Vegetable Fermentation Facility Hosts Distinct Microbiomes Reflecting the Production Environment. Appl. Environ. Microbiol. 84. 10.1128/AEM.01680-18. GCF_009913915.1_ASM991391v1_genomic MortensenS_xxxx__WK054-2-L-08h-04E9_S16__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks EinsonEJ_2018__SRS2706109__bin.3 63.79310345 0.862068966 184 948581 45.73 5940 SRS2706109 SRR6313181 USA PRJNA336518 SRP082330 NCBI Einson, J.E., Rani, A., You, X., Rodriguez, A.A., Randell, C.L., Barnaba, T., Mammel, M.K., Kotewicz, M.L., Elkins, C.A., and Sela, D.A. (2018). A Vegetable Fermentation Facility Hosts Distinct Microbiomes Reflecting the Production Environment. Appl. Environ. Microbiol. 84. 10.1128/AEM.01680-18. MotaGutierrezJ_2021__SRR11602150__bin.9 EinsonEJ_2018__SRS2706109__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks LeechJ_2020__ERS3967695__bin.14 55.55555556 0.617283951 16 749392 44.49 81817 ERS3967695 ERR4757810 Germany PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967692__bin.3 LeechJ_2020__ERS3967691__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus NA sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks LeechJ_2020__ERS3967695__bin.6 81.25284243 3.436329588 123 1454059 36.93 18341 ERS3967695 ERR4757810 Germany PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. GCF_019656055.1_ASM1965605v1_genomic GCF_019656055.1_ASM1965605v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc miyukkimchii sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks LeechJ_2020__ERS3967695__bin.11 72.6 1.2 1200 9336457 44.55 9840 ERS3967695 ERR4757810 Germany PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967694__bin.5 LeechJ_2020__ERS3967694__bin.5 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kazachstania Kazachstania saulgeensis sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks LeechJ_2020__ERS3967710__bin.8 57.89473684 1.754385965 101 954720 37.9 13259 ERS3967710 ERR4757825 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks LeechJ_2020__ERS3967710__bin.2 50.4305678 1.768261317 318 1225368 38.74 4457 ERS3967710 ERR4757825 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LandisEA_2021__SRS5653132__bin.1 LeechJ_2020__ERS3967742__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus inopinatus sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks LeechJ_2020__ERS3967711__bin.3 95.91750842 1.28600823 91 1898070 38.45 38679 ERS3967711 ERR4757826 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967740__bin.10 LeechJ_2020__ERS3967740__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus parvulus sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks LeechJ_2020__ERS3967711__bin.6 97.23502304 0 44 2206648 60.27 80689 ERS3967711 ERR4757826 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967706__bin.3 LeechJ_2020__ERS3967706__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium longum sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks LeechJ_2020__ERS3967711__bin.15 68.15843621 1.234567901 16 1485092 45.9 106976 ERS3967711 ERR4757826 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MASTER_WP4_UNINA_1__ST007_71775__bin.2 MASTER_WP4_UNINA_1__ST007_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus paraxiangfangensis sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks LeechJ_2020__ERS3967711__bin.14 80.88235714 0.239940938 239 1693126 34.55 11469 ERS3967711 ERR4757826 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967711__bin.14 LeechJ_2020__ERS3967711__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus sp910589675 sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks LeechJ_2020__ERS3967711__bin.11 79.07608696 0.543478261 19 1245791 47.13 79633 ERS3967711 ERR4757826 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967703__bin.6 LeechJ_2020__ERS3967703__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus mucosae sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks LeechJ_2020__ERS3967711__bin.13 97.20470786 1.950169139 233 5226285 52.26 37178 ERS3967711 ERR4757826 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967711__bin.13 LeechJ_2020__ERS3967711__bin.13 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Rahnella Rahnella variigena sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks LeechJ_2020__ERS3967711__bin.10 59.1 1.2 2609 8826525 34.25 3752 ERS3967711 ERR4757826 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967742__bin.3 LeechJ_2020__ERS3967742__bin.3 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kazachstania Kazachstania barnettii sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks LeechJ_2020__ERS3967713__bin.12 94.00749064 1.563670412 87 1893951 36.58 60153 ERS3967713 ERR4757828 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. GCF_019656055.1_ASM1965605v1_genomic LeechJ_2020__ERS3967713__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc miyukkimchii sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks LeechJ_2020__ERS3967722__bin.4 98.9375 0.625 50 3170797 40 82753 ERS3967722 ERR4757837 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 LeechJ_2020__ERS3967722__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks LeechJ_2020__ERS3967722__bin.9 96.27902156 0.746268657 192 2869150 56.35 21275 ERS3967722 ERR4757837 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. G_517_1B_acetobacter_assembly LeechJ_2020__ERS3967722__bin.9 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter sp937875265 sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks LeechJ_2020__ERS3967722__bin.8 77.80100212 1.612903226 427 1676648 60.36 4502 ERS3967722 ERR4757837 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967706__bin.3 LeechJ_2020__ERS3967706__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium longum sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks LeechJ_2020__ERS3967722__bin.15 79.34706145 0.815217391 309 1283843 47.52 4914 ERS3967722 ERR4757837 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967703__bin.6 LeechJ_2020__ERS3967703__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus mucosae sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks LeechJ_2020__ERS3967722__bin.12 80.01953125 0.3125 15 1102477 49.46 139692 ERS3967722 ERR4757837 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967722__bin.12 LeechJ_2020__ERS3967722__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus sp937874695 sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks LeechJ_2020__ERS3967722__bin.6 62.8294909 0.925925926 40 1339163 44.85 65245 ERS3967722 ERR4757837 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967722__bin.6 LeechJ_2020__ERS3967722__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus NA sauerkraut sauerkraut Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks GCF_000420365.1_ASM42036v1_genomic 99.39 0 6 1358385 43.06 412519 GCF_000420365.1 GCF_000420365.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_000420365.1_ASM42036v1_genomic GCF_000420365.1_ASM42036v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella halotolerans salami sausage Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks GCF_001434665.1_ASM143466v1_genomic 99.48 1.64 42 2171354 34.06 86321 GCF_001434665.1 GCF_001434665.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001434665.1_ASM143466v1_genomic GCF_001434665.1_ASM143466v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus tucceti salami sausage Animal Meat pork sausage solid none lactic mesophilic 2-4 weeks GCF_001971585.1_ASM197158v1_genomic 99.48 0 2 2534178 35.37 2506167 GCF_001971585.1 GCF_001971585.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001971585.1_ASM197158v1_genomic GCF_001971585.1_ASM197158v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus allii kimchi scallion scallion_kimchi Plant Vegetables_Aromatics scallion pickled vegetables solid low lactic mesophilic 1 day - 3 months GCF_011611525.1_ASM1161152v1_genomic 100 0 6 3644828 63.1 3597563 GCF_011611525.1 GCF_011611525.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_011611525.1_ASM1161152v1_genomic GCF_011611525.1_ASM1161152v1_genomic Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter rhaeticus kombucha scoby_kombucha_tea Plant Sugar sugar beverage liquid low acetic mesophilic 1-14 days LeechJ_xxxx__AF68__bin.16 94.18532338 0.497512438 132 2213589 59.23 35347 SAMN39472487 SRR27593174 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 LeechJ_xxxx__AF88__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lovaniensis sekete sekete Plant Grain corn beverage liquid low lactic mesophilic 3-7 days LeechJ_xxxx__AF68__bin.10 86.34790528 2.276867031 306 1167230 53.65 4386 SAMN39472487 SRR27593174 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF68__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum sekete sekete Plant Grain corn beverage liquid low lactic mesophilic 3-7 days LeechJ_xxxx__AF68__bin.18 89.66195699 1.533742331 186 2334013 44.88 20148 SAMN39472487 SRR27593174 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967691__bin.13 LeechJ_xxxx__AF68__bin.18 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella cibaria sekete sekete Plant Grain corn beverage liquid low lactic mesophilic 3-7 days LeechJ_xxxx__AF68__bin.6 82.39263804 1.656441718 272 1696530 45.03 9527 SAMN39472487 SRR27593174 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_004771075.1_ASM477107v1_genomic GCF_004771075.1_ASM477107v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella confusa sekete sekete Plant Grain corn beverage liquid low lactic mesophilic 3-7 days LeechJ_xxxx__AF68__bin.3 97.2826087 2.581521739 150 2680039 43.59 37620 SAMN39472487 SRR27593174 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF68__bin.3 LeechJ_xxxx__AF68__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Paucilactobacillus Paucilactobacillus vaccinostercus sekete sekete Plant Grain corn beverage liquid low lactic mesophilic 3-7 days LeechJ_xxxx__AF68__bin.13 98.03664921 2.137870855 195 1751919 40.08 17295 SAMN39472487 SRR27593174 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF68__bin.13 LeechJ_xxxx__AF68__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;NA NA sekete sekete Plant Grain corn beverage liquid low lactic mesophilic 3-7 days LeechJ_xxxx__AF68__bin.1 90.78616352 1.608845608 428 1863661 38.55 5049 SAMN39472487 SRR27593174 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF68__bin.1 LeechJ_xxxx__AF68__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus hircilactis sekete sekete Plant Grain corn beverage liquid low lactic mesophilic 3-7 days GCF_001436675.1_ASM143667v1_genomic 99.06 0 64 2221581 48.64 102332 GCF_001436675.1 GCF_001436675.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001436675.1_ASM143667v1_genomic GCF_001436675.1_ASM143667v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus senmaizukei senmaizuke senmaizuke_a_japanese_pickle Plant Roots_Tubers turnip pickled vegetables solid none lactic mesophilic 1-7 days Imad_S-7-b.bin.11 84.59 1.16 841 3108811 62.65 4285 SAMN29828083 SRR20308688 Lebanon PRJNA860091 SRP387050 NCBI Ammoun I, Kothe CI, Mohellibi N, Beal C, Yaacoub R, Renault P. Lebanese fermented goat milk products: From tradition to meta-omics. Food Res Int. 2023 Jun;168:112762. doi: 10.1016/j.foodres.2023.112762. CM_UNINA_FFOOD__FFOOD_251__bin.10 Imad_S-7-b.bin.11 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Aeromonadaceae;Aeromonas Aeromonas caviae cheese serdaleh serdaleh Animal Dairy milk goat cheese semi-solid low lactic mesophilic 20 days Imad_S-8.bin.11 88.82 1.57 302 1604863 35.48 6891 SAMN29828084 SRR20308687 Lebanon PRJNA860091 SRP387050 NCBI Ammoun I, Kothe CI, Mohellibi N, Beal C, Yaacoub R, Renault P. Lebanese fermented goat milk products: From tradition to meta-omics. Food Res Int. 2023 Jun;168:112762. doi: 10.1016/j.foodres.2023.112762. MAG_178 Imad_S-8.bin.11 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus parauberis cheese serdaleh serdaleh Animal Dairy milk goat cheese semi-solid low lactic mesophilic 20 days Imad_S-8.bin.4 80.89 0.07 4 874001 29.69 536135 SAMN29828084 SRR20308687 Lebanon PRJNA860091 SRP387050 NCBI Ammoun I, Kothe CI, Mohellibi N, Beal C, Yaacoub R, Renault P. Lebanese fermented goat milk products: From tradition to meta-omics. Food Res Int. 2023 Jun;168:112762. doi: 10.1016/j.foodres.2023.112762. Imad_S-8.bin.4 Imad_S-8.bin.4 Bacillota;Bacilli;Mycoplasmatales;Metamycoplasmataceae;Mycoplasmopsis Mycoplasmopsis agalactiae cheese serdaleh serdaleh Animal Dairy milk goat cheese semi-solid low lactic mesophilic 20 days MAG_S8 99.03 0 106 1913530 37.68 42000 SAMN29828084 SRR20308687 Lebanon PRJNA860091 SRP387050 NCBI Ammoun I, Kothe CI, Mohellibi N, Beal C, Yaacoub R, Renault P. Lebanese fermented goat milk products: From tradition to meta-omics. Food Res Int. 2023 Jun;168:112762. doi: 10.1016/j.foodres.2023.112762. MAG_S8 MAG_S8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens cheese serdaleh serdaleh Animal Dairy milk goat cheese semi-solid low lactic mesophilic 20 days GCF_001435195.1_ASM143519v1_genomic 99.48 0.52 41 2635966 39.93 196216 GCF_001435195.1 GCF_001435195.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis shochu mash shochu_mash Plant Grain rice starter culture semi-solid high none mesophilic 1-7 days EBC_084.33 63.79 3.45 70 2812740 60.8 66942 SAMN40633078 SRS20892313 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_084.33 EBC_084.33 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter NA soy sauce shoyu Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months EBC_084.34 88.85 3.44 252 2862900 64.43 15928 SAMN40633078 SRS20892313 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_084.34 EBC_084.34 Pseudomonadota;Gammaproteobacteria;Nevskiales;Salinisphaeraceae;Salinisphaera NA soy sauce shoyu Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months EBC_084.37 74.39 1.67 258 2680883 43.87 12967 SAMN40633078 SRS20892313 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_084.37 EBC_084.37 Bacillota;Bacilli;Bacillales_D;Amphibacillaceae;Lentibacillus Lentibacillus salicampi soy sauce shoyu Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months ZhaoCC_2020__SRS5803191__bin.24 50.86206897 0 98 863043 31.57 11317 SRS5803191 SRR10664431 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803192__bin.21 ZhaoCC_2020__SRS5803192__bin.21 Bacillota;Bacilli;Bacillales_D;Amphibacillaceae;Pseudogracilibacillus NA hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803191__bin.31 62.06896552 0 8 840049 39.95 462384 SRS5803191 SRR10664431 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803191__bin.31 ZhaoCC_2020__SRS5803191__bin.31 Bacillota;Bacilli;Bacillales_D;Amphibacillaceae;CALAMD01 NA hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803192__bin.21 75.57471264 0 228 1805188 31.91 11862 SRS5803192 SRR10664433 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803192__bin.21 ZhaoCC_2020__SRS5803192__bin.21 Bacillota;Bacilli;Bacillales_D;Amphibacillaceae;Pseudogracilibacillus NA hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803192__bin.11 78.9044289 0 83 1188201 29.75 26225 SRS5803192 SRR10664433 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803192__bin.11 ZhaoCC_2020__SRS5803192__bin.11 Bacillota;Clostridia;Tissierellales;JASLAT01;JARIDA01 NA hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803192__bin.13 66.55629139 2.869757174 269 2070978 32.35 11980 SRS5803192 SRR10664433 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803193__bin.1 ZhaoCC_2020__SRS5803193__bin.1 Bacillota;Bacilli;Bacillales_D;Amphibacillaceae;Pseudogracilibacillus NA hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803192__bin.14 69.18238994 1.493710692 91 1168323 37.64 17865 SRS5803192 SRR10664433 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803193__bin.14 ZhaoCC_2020__SRS5803193__bin.14 Bacillota;Bacilli;Erysipelotrichales;Erysipelotrichaceae;Erysipelothrix NA hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803192__bin.16 74.13793103 3.448275862 502 2919929 31.38 7686 SRS5803192 SRR10664433 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803192__bin.16 ZhaoCC_2020__SRS5803192__bin.16 Bacillota;Clostridia;Tissierellales;Tissierellaceae;NA NA hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803192__bin.17 93.24009324 0.371503497 187 1563115 29.22 12125 SRS5803192 SRR10664433 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803194__bin.24 ZhaoCC_2020__SRS5803194__bin.24 Bacillota;Clostridia;Tissierellales;JASLAT01;JARIDA01 NA hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803192__bin.31 77.31988762 2.939995986 269 2028811 38.22 9663 SRS5803192 SRR10664433 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803192__bin.31 ZhaoCC_2020__SRS5803192__bin.31 Bacillota;Bacilli;Bacillales_D;Amphibacillaceae;CALAMD01 NA hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803193__bin.4 51.72413793 1.724137931 74 793786 31.86 19414 SRS5803193 SRR10664430 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803192__bin.21 ZhaoCC_2020__SRS5803192__bin.21 Bacillota;Bacilli;Bacillales_D;Amphibacillaceae;Pseudogracilibacillus NA hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803193__bin.17 69.82758621 1.724137931 213 1181355 29.7 7037 SRS5803193 SRR10664430 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803192__bin.11 ZhaoCC_2020__SRS5803192__bin.11 Bacillota;Clostridia;Tissierellales;JASLAT01;JARIDA01 NA hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803193__bin.1 54.31034483 0 240 1514091 32.07 8454 SRS5803193 SRR10664430 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803193__bin.1 ZhaoCC_2020__SRS5803193__bin.1 Bacillota;Bacilli;Bacillales_D;Amphibacillaceae;Pseudogracilibacillus NA hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803193__bin.14 88.67924528 1.650943396 92 1306754 37.76 20802 SRS5803193 SRR10664430 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803193__bin.14 ZhaoCC_2020__SRS5803193__bin.14 Bacillota;Bacilli;Erysipelotrichales;Erysipelotrichaceae;Erysipelothrix NA hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803193__bin.13 58.79310345 0.862068966 156 1046560 30.12 8895 SRS5803193 SRR10664430 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803193__bin.13 ZhaoCC_2020__SRS5803193__bin.13 Bacillota;Clostridia;Tissierellales;JASLAT01;JARIDA01 JARIDA01 sp029257065 hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803193__bin.3 92.7229021 2.097902098 75 1708082 29.62 33178 SRS5803193 SRR10664430 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803193__bin.3 ZhaoCC_2020__SRS5803193__bin.3 Bacillota;Clostridia;Tissierellales;Tissierellaceae;NA NA hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803193__bin.7 91.94630872 3.579418345 105 2233984 33.51 31187 SRS5803193 SRR10664430 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803193__bin.7 ZhaoCC_2020__SRS5803193__bin.7 Bacillota;Clostridia;Lachnospirales;Cellulosilyticaceae;NA NA hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803194__bin.44 69.11421911 0.699300699 97 1133864 29.56 26008 SRS5803194 SRR10664432 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803192__bin.11 ZhaoCC_2020__SRS5803192__bin.11 Bacillota;Clostridia;Tissierellales;JASLAT01;JARIDA01 NA hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803194__bin.14 59.48275862 3.448275862 178 1542132 32.25 14029 SRS5803194 SRR10664432 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803193__bin.1 ZhaoCC_2020__SRS5803193__bin.1 Bacillota;Bacilli;Bacillales_D;Amphibacillaceae;Pseudogracilibacillus NA hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803194__bin.24 91.84149184 0.021853147 138 2228467 29.15 115011 SRS5803194 SRR10664432 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803194__bin.24 ZhaoCC_2020__SRS5803194__bin.24 Bacillota;Clostridia;Tissierellales;JASLAT01;JARIDA01 NA hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803194__bin.5 94.43396226 2.122641509 163 1557719 32.43 15724 SRS5803194 SRR10664432 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803195__bin.4 ZhaoCC_2020__SRS5803194__bin.5 Bacillota;Bacilli;Erysipelotrichales;Erysipelotrichaceae;JAAZDN01 NA hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803194__bin.11 62.28070175 3.50877193 205 1577466 33.72 10520 SRS5803194 SRR10664432 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803194__bin.11 ZhaoCC_2020__SRS5803194__bin.11 Bacillota;Clostridia;Lachnospirales;Cellulosilyticaceae;NA NA hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803194__bin.17 82.0754717 4.716981132 329 1658181 32.62 5785 SRS5803194 SRR10664432 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803194__bin.17 ZhaoCC_2020__SRS5803194__bin.17 Bacillota;Bacilli;Erysipelotrichales;Erysipelotrichaceae;Erysipelothrix NA hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803194__bin.35 50 1.724137931 118 767123 33.51 8094 SRS5803194 SRR10664432 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803194__bin.35 ZhaoCC_2020__SRS5803194__bin.35 Bacillota;Clostridia;Tissierellales;JASLAT01;NA NA hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803194__bin.38 96.61202186 3.796177382 105 1844283 37.16 28213 SRS5803194 SRR10664432 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803194__bin.38 ZhaoCC_2020__SRS5803194__bin.38 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Jeotgalibaca Jeotgalibaca dankookensis hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803195__bin.42 54.31034483 0 158 1060719 31.53 9796 SRS5803195 SRR10664429 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803192__bin.21 ZhaoCC_2020__SRS5803192__bin.21 Bacillota;Bacilli;Bacillales_D;Amphibacillaceae;Pseudogracilibacillus NA hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803195__bin.27 88.36684149 2.447552448 47 1632059 29.28 83948 SRS5803195 SRR10664429 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803194__bin.24 ZhaoCC_2020__SRS5803194__bin.24 Bacillota;Clostridia;Tissierellales;JASLAT01;JARIDA01 NA hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803195__bin.4 93.86792453 1.628481581 183 1562894 32.44 14877 SRS5803195 SRR10664429 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803195__bin.4 ZhaoCC_2020__SRS5803195__bin.4 Bacillota;Bacilli;Erysipelotrichales;Erysipelotrichaceae;JAAZDN01 NA hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803195__bin.23 88.65821678 1.748251748 186 2458806 29.6 46875 SRS5803195 SRR10664429 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803195__bin.23 ZhaoCC_2020__SRS5803195__bin.23 Bacillota;Clostridia;Tissierellales;Tissierellaceae;NA NA hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803195__bin.38 62.45614035 0 326 2557206 40.85 8990 SRS5803195 SRR10664429 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803195__bin.38 ZhaoCC_2020__SRS5803195__bin.38 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Moellerella Moellerella sp963519845 hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803195__bin.39 91.54929577 0.704225352 102 1557818 31.28 24659 SRS5803195 SRR10664429 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803195__bin.39 ZhaoCC_2020__SRS5803195__bin.39 Bacillota;Clostridia;Tissierellales;Gottschalkiaceae;Gottschalkia NA hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803195__bin.46 75.86206897 3.448275862 121 2087598 35.34 31901 SRS5803195 SRR10664429 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. DeFilippisF_xxxx__DF_100__bin.12 DeFilippisF_xxxx__DF_100__bin.12 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Carnobacterium_A NA hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month ZhaoCC_2020__SRS5803195__bin.53 65.51724138 0 64 1528243 32.31 80715 SRS5803195 SRR10664429 Korea PRJNA594855 SRP236017 NCBI Zhao, C.-C., and Eun, J.-B. (2020). Shotgun metagenomics approach reveals the bacterial community and metabolic pathways in commercial hongeo product, a traditional Korean fermented skate product. Food Res. Int. 131, 109030. ZhaoCC_2020__SRS5803195__bin.53 ZhaoCC_2020__SRS5803195__bin.53 Bacillota;Bacilli;Bacillales_D;Amphibacillaceae;Pseudogracilibacillus NA hongeo skate_fish Animal Seafood skate seafood solid none mixed psychrophilic 1 month LeechJ_xxxx__AF80__bin.3 92.653567 0.36086638 177 3352014 44.13 31547 SAMN39472499 SRR27593161 Burkina Faso PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602153__bin.4 LeechJ_xxxx__AF83__bin.8 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus subtilis soumbala soumbala Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days LeechJ_xxxx__AF80__bin.2 95.36423841 0.772626932 209 2225798 36.34 14663 SAMN39472499 SRR27593161 Burkina Faso PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF80__bin.2 LeechJ_xxxx__AF80__bin.2 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Ureibacillus Ureibacillus thermosphaericus soumbala soumbala Plant Legumes locust bean other bean paste semi-solid none lactic mesophilic 1-3 days GCF_006740305.1_ASM674030v1_genomic 99.03 0 1 1910306 50.07 1910306 GCF_006740305.1 GCF_006740305.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_006740305.1_ASM674030v1_genomic GCF_006740305.1_ASM674030v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii sour grain mash sour_grain_mash Plant Grain barley beverage semi-solid low lactic none 3-7 days GCF_001434785.1_ASM143478v1_genomic 100 0.62 57 2473044 52.01 73803 GCF_001434785.1 GCF_001434785.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 YasirM_2022__SRR18335012__bin.3 GCF_001434785.1_ASM143478v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus namurensis A sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days GCF_001434985.1_ASM143498v1_genomic 99.48 1.15 142 2539877 35.1 31863 GCF_001434985.1 GCF_001434985.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001434985.1_ASM143498v1_genomic GCF_001434985.1_ASM143498v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus paralimentarius sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days GCF_001435935.1_ASM143593v1_genomic 99.46 2.17 123 1998799 48.1 36275 GCF_001435935.1 GCF_001435935.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 MASTER_WP4_UNINA_2__P-22__bin.8 GCF_001435935.1_ASM143593v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus panis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days GCF_001436035.1_ASM143603v1_genomic 99.38 0.99 58 1228010 34.69 52620 GCF_001436035.1 GCF_001436035.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 LandisEA_2021__SRS5653399__bin.4 LandisEA_2021__SRS5653399__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Fructilactobacillus Fructilactobacillus sanfranciscensis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days GCF_001437055.1_ASM143705v1_genomic 98.91 0.27 9 1645623 47.72 286054 GCF_001437055.1 GCF_001437055.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001437055.1_ASM143705v1_genomic GCF_001437055.1_ASM143705v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus secaliphilus sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days GCF_007992055.1_ASM799205v1_genomic 99.48 1.57 186 2285531 38.21 24067 GCF_007992055.1 GCF_007992055.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_007992055.1_ASM799205v1_genomic GCF_007992055.1_ASM799205v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus mindensis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days GCF_029509535.1_ASM2950953v1_genomic 99.46 1.36 36 2576223 43.58 132026 GCF_029509535.1 GCF_029509535.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 LandisEA_2021__SRS5653152__bin.2 LandisEA_2021__SRS5653152__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Furfurilactobacillus Furfurilactobacillus milii sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days MAG_157 90.84 4.11 766 3082045 36.56 4543 ['SAMN12283268', 'SAMN12283300'] ['SRR9701327', 'SRR9701328'] China PRJNA554763 SRP215175 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. KharnaiorP_2023__SRR22859379__bin.8 MAG_157 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus pentosaceus sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days MAG_616 94 3.43 424 2248259 42.7 8128 ['SAMN12283268', 'SAMN12283300'] ['SRR9701327', 'SRR9701328'] China PRJNA554763 SRP215175 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38 MASTER_WP4_CSIC_2__P2599__bin.20 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Latilactobacillus Latilactobacillus curvatus sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days MAG_617 55.6 7.3 1629 4066036 44.47 2397 ['SAMN12283268', 'SAMN12283300'] ['SRR9701327', 'SRR9701328'] China PRJNA554763 SRP215175 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_45 MAG_617 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_D Enterococcus D casseliflavus sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days G_011_1B_oryzifermentans_assembly 100 1 66 2923419 52.4 208737 SAMN41895332 SRR29538198 USA PRJNA1095457 SRP515890 NCBI Rappaport HB, Senewiratne NPJ, Lucas SK, Wolfe BE, Oliverio AM. Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes. mSystems. 2024 Oct 22;9(10):e0053724. doi: 10.1128/msystems.00537-24. G_24_1A_oryzifermentans_assembly G_011_1B_oryzifermentans_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter oryzifermentans sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days G_275_1B_tropicalis_assembly 100 0.5 70 3823218 55.52 747097 SAMN41895337 SRR29538182 USA PRJNA1095457 SRP515890 NCBI Rappaport HB, Senewiratne NPJ, Lucas SK, Wolfe BE, Oliverio AM. Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes. mSystems. 2024 Oct 22;9(10):e0053724. doi: 10.1128/msystems.00537-24. G_275_1B_tropicalis_assembly G_275_1B_tropicalis_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter tropicalis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days G_338_1B_fabarum_extracted_assembly 100 0.5 28 2625792 58.42 227047 SAMN41895334 SRR29538186 USA PRJNA1095457 SRP515890 NCBI Rappaport HB, Senewiratne NPJ, Lucas SK, Wolfe BE, Oliverio AM. Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes. mSystems. 2024 Oct 22;9(10):e0053724. doi: 10.1128/msystems.00537-24. MAG_15 G_338_1B_fabarum_extracted_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days G_361_1B_senegalensis_assembly 100 0 69 3774405 56.05 570594 SAMN41895335 SRR29538184 Thailand PRJNA1095457 SRP515890 NCBI Rappaport HB, Senewiratne NPJ, Lucas SK, Wolfe BE, Oliverio AM. Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes. mSystems. 2024 Oct 22;9(10):e0053724. doi: 10.1128/msystems.00537-24. G_361_1B_senegalensis_assembly G_361_1B_senegalensis_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter senegalensis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days G_13_2A_senegalensis_assembly 100 0 35 4085983 55.33 317432 SAMN41895336 SRR29538183 USA PRJNA1095457 SRP515890 NCBI Rappaport HB, Senewiratne NPJ, Lucas SK, Wolfe BE, Oliverio AM. Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes. mSystems. 2024 Oct 22;9(10):e0053724. doi: 10.1128/msystems.00537-24. G_361_1B_senegalensis_assembly G_13_2A_senegalensis_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter senegalensis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days G_275_3_oxydans_assembly 99.75 0 85 3256344 60.56 130248 SAMN41895337 SRR29538182 USA PRJNA1095457 SRP515890 NCBI Rappaport HB, Senewiratne NPJ, Lucas SK, Wolfe BE, Oliverio AM. Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes. mSystems. 2024 Oct 22;9(10):e0053724. doi: 10.1128/msystems.00537-24. G_275_3_oxydans_assembly G_275_3_oxydans_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter potus sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days G_364_1_oxydans_assembly 100 3.23 76 3867379 60.28 313274 SAMN41895338 SRR29538181 Australia PRJNA1095457 SRP515890 NCBI Rappaport HB, Senewiratne NPJ, Lucas SK, Wolfe BE, Oliverio AM. Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes. mSystems. 2024 Oct 22;9(10):e0053724. doi: 10.1128/msystems.00537-24. LeechJ_2020__ERS3967701__bin.5 MortensenS_xxxx__WK060-2-L-08h-04H6_S40__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter oxydans sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days G_125_1B_pasteurianus_extracted_assembly 93.53 0 13 2250622 53.81 371209 SAMN41895339 SRR29538180 USA PRJNA1095457 SRP515890 NCBI Rappaport HB, Senewiratne NPJ, Lucas SK, Wolfe BE, Oliverio AM. Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes. mSystems. 2024 Oct 22;9(10):e0053724. doi: 10.1128/msystems.00537-24. MortensenS_xxxx__WK032-1-L-48h-03B6_S34__bin.2 MortensenS_xxxx__WK032-1-L-48h-03B6_S34__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter pasteurianus sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days G_154_1A_ghanensis_extracted_assembly 99.75 0 24 2517107 57.12 252051 SAMN41895340 SRR29538179 USA PRJNA1095457 SRP515890 NCBI Rappaport HB, Senewiratne NPJ, Lucas SK, Wolfe BE, Oliverio AM. Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes. mSystems. 2024 Oct 22;9(10):e0053724. doi: 10.1128/msystems.00537-24. SRR10454486C2703_ghanensis_assembly SRR10454486C2703_ghanensis_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter ghanensis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days G_199_1A_oryzifermentans_extracted_assembly 100 0.75 24 2868179 52.5 449330 SAMN41895341 SRR29538178 USA PRJNA1095457 SRP515890 NCBI Rappaport HB, Senewiratne NPJ, Lucas SK, Wolfe BE, Oliverio AM. Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes. mSystems. 2024 Oct 22;9(10):e0053724. doi: 10.1128/msystems.00537-24. G_24_1A_oryzifermentans_assembly G_199_1A_oryzifermentans_extracted_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter oryzifermentans sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days G_24_1A_oryzifermentans_assembly 100 0 33 2960614 52.42 247881 SAMN41895342 SRR29538196 USA PRJNA1095457 SRP515890 NCBI Rappaport HB, Senewiratne NPJ, Lucas SK, Wolfe BE, Oliverio AM. Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes. mSystems. 2024 Oct 22;9(10):e0053724. doi: 10.1128/msystems.00537-24. G_24_1A_oryzifermentans_assembly G_24_1A_oryzifermentans_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter oryzifermentans sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days G_272_1B_malorum_assembly 100 0.5 17 3305834 57.45 559983 SAMN41895343 SRR29538195 Norway PRJNA1095457 SRP515890 NCBI Rappaport HB, Senewiratne NPJ, Lucas SK, Wolfe BE, Oliverio AM. Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes. mSystems. 2024 Oct 22;9(10):e0053724. doi: 10.1128/msystems.00537-24. MortensenS_xxxx__WK067-1-L-48h-05C1_S71__bin.5 G_272_1B_malorum_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter malorum sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days G_35_1B_malorum_assembly 100 0 19 3111579 57.79 490057 SAMN41895344 SRR29538194 USA PRJNA1095457 SRP515890 NCBI Rappaport HB, Senewiratne NPJ, Lucas SK, Wolfe BE, Oliverio AM. Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes. mSystems. 2024 Oct 22;9(10):e0053724. doi: 10.1128/msystems.00537-24. G_35_1B_malorum_assembly G_35_1B_malorum_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter malorum A sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days G_398_1B_oryzifermentans_assembly 100 0 68 3117665 52.3 167029 SAMN41895345 SRR29538193 USA PRJNA1095457 SRP515890 NCBI Rappaport HB, Senewiratne NPJ, Lucas SK, Wolfe BE, Oliverio AM. Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes. mSystems. 2024 Oct 22;9(10):e0053724. doi: 10.1128/msystems.00537-24. G_24_1A_oryzifermentans_assembly G_398_1B_oryzifermentans_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter oryzifermentans sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days G_490_1A_malorum_assembly 100 0.5 29 3264742 57.64 401063 SAMN41895346 SRR29538192 USA PRJNA1095457 SRP515890 NCBI Rappaport HB, Senewiratne NPJ, Lucas SK, Wolfe BE, Oliverio AM. Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes. mSystems. 2024 Oct 22;9(10):e0053724. doi: 10.1128/msystems.00537-24. G_35_1B_malorum_assembly G_490_1A_malorum_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter malorum A sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days G_497_1B_pasteurianus_extracted_assembly 100 0.25 29 3045088 53.01 230414 SAMN41895347 SRR29538191 USA PRJNA1095457 SRP515890 NCBI Rappaport HB, Senewiratne NPJ, Lucas SK, Wolfe BE, Oliverio AM. Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes. mSystems. 2024 Oct 22;9(10):e0053724. doi: 10.1128/msystems.00537-24. MortensenS_xxxx__WK032-1-L-48h-03B6_S34__bin.2 MortensenS_xxxx__WK032-1-L-48h-03B6_S34__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter pasteurianus sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days G_507_1A_malorum_assembly 100 0 18 3132409 57.73 490063 SAMN41895348 SRR29538190 USA PRJNA1095457 SRP515890 NCBI Rappaport HB, Senewiratne NPJ, Lucas SK, Wolfe BE, Oliverio AM. Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes. mSystems. 2024 Oct 22;9(10):e0053724. doi: 10.1128/msystems.00537-24. G_35_1B_malorum_assembly G_35_1B_malorum_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter malorum A sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days G_514_1B_orientalis_assembly 100 0 34 3100319 52.51 695501 SAMN41895349 SRR29538189 USA PRJNA1095457 SRP515890 NCBI Rappaport HB, Senewiratne NPJ, Lucas SK, Wolfe BE, Oliverio AM. Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes. mSystems. 2024 Oct 22;9(10):e0053724. doi: 10.1128/msystems.00537-24. G_514_1B_orientalis_assembly G_514_1B_orientalis_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days G_517_1B_acetobacter_assembly 100 0 21 3243724 55.93 882176 SAMN41895350 SRR29538188 Canada PRJNA1095457 SRP515890 NCBI Rappaport HB, Senewiratne NPJ, Lucas SK, Wolfe BE, Oliverio AM. Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes. mSystems. 2024 Oct 22;9(10):e0053724. doi: 10.1128/msystems.00537-24. G_517_1B_acetobacter_assembly G_517_1B_acetobacter_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter sp937875265 sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days G_65_1_oryzoeni_assembly 99.5 0 98 3041014 52.86 129203 SAMN41895351 SRR29538187 USA PRJNA1095457 SRP515890 NCBI Rappaport HB, Senewiratne NPJ, Lucas SK, Wolfe BE, Oliverio AM. Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes. mSystems. 2024 Oct 22;9(10):e0053724. doi: 10.1128/msystems.00537-24. GCF_004014775.2_ASM401477v2_genomic G_65_1_oryzoeni_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter oryzoeni sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days G_97_1A_fabarum_extracted_assembly 100 0.25 17 2570077 58.51 209554 SAMN41895352 SRR29538185 USA PRJNA1095457 SRP515890 NCBI Rappaport HB, Senewiratne NPJ, Lucas SK, Wolfe BE, Oliverio AM. Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes. mSystems. 2024 Oct 22;9(10):e0053724. doi: 10.1128/msystems.00537-24. MAG_15 G_97_1A_fabarum_extracted_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days SRR10454486C2703_ghanensis_assembly 99.75 0 25 2569459 57.08 264885 SAMN13285005 SRR10454486 USA PRJNA589612 SRP230115 NCBI Rappaport HB, Senewiratne NPJ, Lucas SK, Wolfe BE, Oliverio AM. Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes. mSystems. 2024 Oct 22;9(10):e0053724. doi: 10.1128/msystems.00537-24. SRR10454486C2703_ghanensis_assembly SRR10454486C2703_ghanensis_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter ghanensis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days SRR10454491C1008_acetobacter_assembly 100 0 9 3046114 53.4 534616 SAMN13285386 SRR10454491 New Zealand PRJNA589612 SRP230115 NCBI Rappaport HB, Senewiratne NPJ, Lucas SK, Wolfe BE, Oliverio AM. Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes. mSystems. 2024 Oct 22;9(10):e0053724. doi: 10.1128/msystems.00537-24. SRR10454491C1008_acetobacter_assembly SRR10454491C1008_acetobacter_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days SRR10454494C1110_syzygii_assembly 96.02 0 17 2288775 56.28 169319 SAMN13285339 SRR10454494 USA PRJNA589612 SRP230115 NCBI Rappaport HB, Senewiratne NPJ, Lucas SK, Wolfe BE, Oliverio AM. Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes. mSystems. 2024 Oct 22;9(10):e0053724. doi: 10.1128/msystems.00537-24. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 SRR10454494C1110_syzygii_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days SRR10454509C293_malorum_assembly 100 0.75 13 3276628 57.56 508474 SAMN13285200 SRR10454509 USA PRJNA589612 SRP230115 NCBI Rappaport HB, Senewiratne NPJ, Lucas SK, Wolfe BE, Oliverio AM. Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes. mSystems. 2024 Oct 22;9(10):e0053724. doi: 10.1128/msystems.00537-24. MortensenS_xxxx__WK067-1-L-48h-05C1_S71__bin.5 SRR10454509C293_malorum_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter malorum sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days SRR10454511C706_acetobacter_assembly 100 0 23 2638157 52.26 186320 SAMN13285195 SRR10454511 USA PRJNA589612 SRP230115 NCBI Rappaport HB, Senewiratne NPJ, Lucas SK, Wolfe BE, Oliverio AM. Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes. mSystems. 2024 Oct 22;9(10):e0053724. doi: 10.1128/msystems.00537-24. SRR10454511C706_acetobacter_assembly SRR10454511C706_acetobacter_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days SRR10454513_mb_1_oryzifermentans_assembly 100 0 16 2653249 52.33 216604 SAMN13285126 SRR10454513 USA PRJNA589612 SRP230115 NCBI Rappaport HB, Senewiratne NPJ, Lucas SK, Wolfe BE, Oliverio AM. Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes. mSystems. 2024 Oct 22;9(10):e0053724. doi: 10.1128/msystems.00537-24. G_24_1A_oryzifermentans_assembly G_24_1A_oryzifermentans_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter oryzifermentans sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days SRR10454516C127_okinawensis_assembly 99.5 0 40 2692650 58.12 123941 SAMN13285116 SRR10454516 USA PRJNA589612 SRP230115 NCBI Rappaport HB, Senewiratne NPJ, Lucas SK, Wolfe BE, Oliverio AM. Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes. mSystems. 2024 Oct 22;9(10):e0053724. doi: 10.1128/msystems.00537-24. SRR10454516C127_okinawensis_assembly SRR10454516C127_okinawensis_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter okinawensis A sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days SRR10454517C1506_cerevisiae_assembly 100 0 21 3142535 57.73 908619 SAMN13285078 SRR10454517 USA PRJNA589612 SRP230115 NCBI Rappaport HB, Senewiratne NPJ, Lucas SK, Wolfe BE, Oliverio AM. Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes. mSystems. 2024 Oct 22;9(10):e0053724. doi: 10.1128/msystems.00537-24. SRR10454517C1506_cerevisiae_assembly SRR10454517C1506_cerevisiae_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter cerevisiae sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5652903__bin.3 97.5 0 146 2139728 46.24 24452 SRS5652903 SRR10454520 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5652903__bin.1 100 0.497512438 26 2748828 58.22 280070 SRS5652903 SRR10454520 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. G_35_1B_malorum_assembly LandisEA_2021__SRS5652903__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter malorum A sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5652903__bin.4 98.14814815 2.777777778 68 3003979 44.86 73938 SRS5652903 SRR10454520 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5652903__bin.2 81.73330526 1.047120419 469 2052443 34.58 5324 SRS5652903 SRR10454520 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653137__bin.2 LandisEA_2021__SRS5652903__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus crustorum sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5652913__bin.2 85.3125 0.208333333 29 1343630 45.84 73247 SRS5652913 SRR10454503 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5652913__bin.8 54.86193211 0 9 680691 35.24 80586 SRS5652913 SRR10454503 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653137__bin.2 LandisEA_2021__SRS5653137__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus crustorum sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5652926__bin.4 76.5625 0 36 1944873 46.33 81492 SRS5652926 SRR10454502 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5652926__bin.2 53.44827586 0 29 1084365 45.64 69850 SRS5652926 SRR10454502 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5652926__bin.3 98.64130435 1.358695652 104 2606267 42.97 37590 SRS5652926 SRR10454502 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653333__bin.1 LandisEA_2021__SRS5652926__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5652931__bin.2 91.53439153 0.529100529 13 1564163 37.67 238314 SRS5652931 SRR10454501 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5652931__bin.3 99.38271605 0.019290123 60 1925413 38.61 41992 SRS5652931 SRR10454501 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653132__bin.1 LandisEA_2021__SRS5653132__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus inopinatus sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5652933__bin.2 99.38271605 0.019290123 54 1870672 38.63 53963 SRS5652933 SRR10454500 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653132__bin.1 LandisEA_2021__SRS5652933__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus inopinatus sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5652970__bin.3 92.1875 0 20 1756699 46.26 141043 SRS5652970 SRR10454499 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5652970__bin.2 99.22839506 0.019290123 53 1857788 38.66 59210 SRS5652970 SRR10454499 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653132__bin.1 LandisEA_2021__SRS5653132__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus inopinatus sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5652972__bin.5 82.1875 0 30 2076281 46.14 111074 SRS5652972 SRR10454486 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5652990__bin.3 80.9375 0 44 1245785 45.91 36554 SRS5652990 SRR10454498 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. MotaGutierrezJ_2021__SRR11602150__bin.9 MASTER_WP4_CSIC_2__P2604__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5652990__bin.4 62.06896552 0 8 890868 43.72 173856 SRS5652990 SRR10454498 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653152__bin.2 LandisEA_2021__SRS5653152__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Furfurilactobacillus Furfurilactobacillus milii sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5652990__bin.5 67.24137931 0 8 1187238 34.52 196542 SRS5652990 SRR10454498 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. GCF_003967595.1_ASM396759v1_genomic GCF_003967595.1_ASM396759v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus musae sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5652995__bin.10 58.38552302 2.617801047 69 2718150 35.79 86339 SRS5652995 SRR10454496 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. GCF_001434985.1_ASM143498v1_genomic LandisEA_2021__SRS5652995__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus paralimentarius sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5652995__bin.1 58.62068966 0 5 1008799 45.17 609046 SRS5652995 SRR10454496 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. GCF_001438845.1_ASM143884v1_genomic LandisEA_2021__SRS5652995__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus xiangfangensis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5652995__bin.3 87.56239854 0.442708333 282 2608801 50.95 15077 SRS5652995 SRR10454496 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. GCF_016861655.1_ASM1686165v1_genomic LandisEA_2021__SRS5652995__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus lanxiensis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5652995__bin.4 98.125 0.78125 32 1224350 34.44 56954 SRS5652995 SRR10454496 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653399__bin.4 LandisEA_2021__SRS5653399__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Fructilactobacillus Fructilactobacillus sanfranciscensis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5652995__bin.9 57.21393035 0 5 1137329 54.09 768293 SRS5652995 SRR10454496 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. SRR10454511C706_acetobacter_assembly SRR10454511C706_acetobacter_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653013__bin.1 96.58203125 0.3125 41 2221940 46.18 105960 SRS5653013 SRR10454487 Canada PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653013__bin.3 96.60493827 2.237654321 63 3043690 44.62 77189 SRS5653013 SRR10454487 Canada PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653013__bin.4 96.76953125 0.3125 123 2455680 49.36 34700 SRS5653013 SRR10454487 Canada PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. GCF_001434055.1_ASM143405v1_genomic GCF_001434055.1_ASM143405v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus parabrevis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653047__bin.1 99.375 0.625 56 1217831 34.52 33955 SRS5653047 SRR10454518 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653399__bin.4 LandisEA_2021__SRS5653399__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Fructilactobacillus Fructilactobacillus sanfranciscensis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653049__bin.6 84.23046875 1.145833333 343 1961463 46.35 7626 SRS5653049 SRR10454517 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653049__bin.4 91.97530864 0 25 1263438 38.67 84159 SRS5653049 SRR10454517 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LeechJ_2020__ERS3967740__bin.10 LeechJ_2020__ERS3967740__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus parvulus sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653081__bin.4 54.71204188 0.785340314 84 1917497 44.32 34597 SRS5653081 SRR10454495 Canada PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653081__bin.1 50 0 10 620910 45.78 156243 SRS5653081 SRR10454495 Canada PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653094__bin.7 98.7654321 2.777777778 36 3247416 44.48 154044 SRS5653094 SRR10454494 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. FalardeauJ_2023__SRR20811279__bin.3 LandisEA_2021__SRS5653094__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653094__bin.6 95.02487562 0 15 2087428 56.62 169227 SRS5653094 SRR10454494 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 SRR10454494C1110_syzygii_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653094__bin.4 76.5625 0 16 1025928 45.98 89591 SRS5653094 SRR10454494 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653126__bin.3 99.0625 0 32 2206554 46.27 107922 SRS5653126 SRR10454516 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653126__bin.4 99.38271605 2.777777778 33 3093456 44.67 131524 SRS5653126 SRR10454516 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653126__bin.1 97.51243781 0 56 2507782 58.56 74598 SRS5653126 SRR10454516 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. SRR10454516C127_okinawensis_assembly SRR10454516C127_okinawensis_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter okinawensis A sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653128__bin.1 98.35390947 3.395061728 200 2959247 44.77 20619 SRS5653128 SRR10454515 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653128__bin.3 56.89655172 0 21 650630 45.98 119800 SRS5653128 SRR10454515 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653132__bin.2 97.8125 0 30 2142553 46.33 100815 SRS5653132 SRR10454514 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653132__bin.4 98.36956522 0.135869565 37 2906358 46.39 123027 SRS5653132 SRR10454514 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. FontanaF_2023__SRR20746951__bin.4 LandisEA_2021__SRS5653132__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653132__bin.3 98.64130435 1.358695652 100 2577043 42.77 40153 SRS5653132 SRR10454514 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653333__bin.1 LandisEA_2021__SRS5653132__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653132__bin.1 99.38271605 0.019290123 48 1931054 38.61 65486 SRS5653132 SRR10454514 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653132__bin.1 LandisEA_2021__SRS5653132__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus inopinatus sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653137__bin.3 99.38271605 2.777777778 30 3165722 44.51 134728 SRS5653137 SRR10454513 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653137__bin.6 98.00995025 0 14 2286429 52.71 375313 SRS5653137 SRR10454513 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. G_24_1A_oryzifermentans_assembly G_24_1A_oryzifermentans_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter oryzifermentans sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653137__bin.2 99.47643979 1.047120419 20 2362516 34.6 189652 SRS5653137 SRR10454513 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653137__bin.2 LandisEA_2021__SRS5653137__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus crustorum sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653137__bin.1 99.45652174 1.358695652 30 2537455 43.51 177499 SRS5653137 SRR10454513 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653152__bin.2 LandisEA_2021__SRS5653152__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Furfurilactobacillus Furfurilactobacillus milii sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653152__bin.4 74.46230722 1.979166667 289 879577 34.03 3263 SRS5653152 SRR10454507 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653399__bin.4 LandisEA_2021__SRS5653152__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Fructilactobacillus Fructilactobacillus sanfranciscensis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653152__bin.5 98.42931937 1.047120419 26 2413784 34.65 201741 SRS5653152 SRR10454507 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653137__bin.2 LandisEA_2021__SRS5653137__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus crustorum sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653152__bin.2 99.45652174 1.358695652 18 2544083 43.57 201163 SRS5653152 SRR10454507 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653152__bin.2 LandisEA_2021__SRS5653152__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Furfurilactobacillus Furfurilactobacillus milii sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653152__bin.3 83.2 1.7 1765 10418995 38.1 7767 SRS5653152 SRR10454507 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 LandisEA_2021__SRS5653152__bin.3 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653155__bin.4 98.9375 0.625 44 3009998 40.07 103931 SRS5653155 SRR10454506 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 LandisEA_2021__SRS5653155__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653155__bin.3 95.708955220000007 0.414593698 232 2809208 58.07 18146 SRS5653155 SRR10454506 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. SRR10454517C1506_cerevisiae_assembly LandisEA_2021__SRS5653155__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter cerevisiae sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653155__bin.1 98.9375 0 31 2487082 43.63 127661 SRS5653155 SRR10454506 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653155__bin.1 LandisEA_2021__SRS5653155__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus parabuchneri sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653155__bin.7 80.24691358 0 24 925303 38.46 61681 SRS5653155 SRR10454506 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LeechJ_2020__ERS3967740__bin.10 LeechJ_2020__ERS3967740__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus parvulus sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653155__bin.6 99.375 0.78125 49 1228165 34.42 35822 SRS5653155 SRR10454506 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653399__bin.4 LandisEA_2021__SRS5653399__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Fructilactobacillus Fructilactobacillus sanfranciscensis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653156__bin.5 97.2172619 0 63 2184126 46.25 55388 SRS5653156 SRR10454505 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653156__bin.3 99.38271605 2.777777778 34 3103029 44.72 118452 SRS5653156 SRR10454505 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653156__bin.6 99.45652174 1.358695652 49 2596350 43.55 104426 SRS5653156 SRR10454505 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653152__bin.2 LandisEA_2021__SRS5653152__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Furfurilactobacillus Furfurilactobacillus milii sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653168__bin.7 99.0625 0 36 2184969 46.3 105543 SRS5653168 SRR10454504 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653168__bin.3 86.72839506 1.311728395 28 2196630 44.93 122747 SRS5653168 SRR10454504 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653168__bin.6 93.47826087 0.815217391 23 1838250 43.54 159031 SRS5653168 SRR10454504 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653168__bin.6 LandisEA_2021__SRS5653168__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Furfurilactobacillus Furfurilactobacillus rossiae sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653168__bin.1 64.67661692 0 7 2074868 57.96 1238430 SRS5653168 SRR10454504 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. G_35_1B_malorum_assembly G_35_1B_malorum_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter malorum A sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653198__bin.5 69.44444444 0.617283951 11 1469398 44.94 187634 SRS5653198 SRR10454493 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653198__bin.3 99.375 0.78125 34 1244821 34.45 56800 SRS5653198 SRR10454493 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653399__bin.4 LandisEA_2021__SRS5653399__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Fructilactobacillus Fructilactobacillus sanfranciscensis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653199__bin.4 95.29662698 1.988636364 373 2136993 46.36 7578 SRS5653199 SRR10454492 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653199__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653199__bin.3 97.82608696 0 75 2522687 46.66 55067 SRS5653199 SRR10454492 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653199__bin.6 81.48148148 0 19 874730 38.39 100728 SRS5653199 SRR10454492 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LeechJ_2020__ERS3967740__bin.10 LeechJ_2020__ERS3967740__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus parvulus sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653217__bin.7 61.875 0 29 1842284 46.26 124391 SRS5653217 SRR10454491 New Zealand PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653217__bin.3 100 0 20 3014132 53.43 447268 SRS5653217 SRR10454491 New Zealand PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. SRR10454491C1008_acetobacter_assembly SRR10454491C1008_acetobacter_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653217__bin.4 99.38271605 0 69 1834090 38.63 39846 SRS5653217 SRR10454491 New Zealand PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LeechJ_2020__ERS3967740__bin.10 LeechJ_2020__ERS3967740__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus parvulus sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653217__bin.2 98.7654321 1.234567901 42 2794200 44.28 86815 SRS5653217 SRR10454491 New Zealand PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. GCF_005404945.1_ASM540494v1_genomic LandisEA_2021__SRS5653217__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus pingfangensis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653219__bin.1 98.75 0.625 35 1178371 34.6 61512 SRS5653219 SRR10454490 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653399__bin.4 LandisEA_2021__SRS5653399__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Fructilactobacillus Fructilactobacillus sanfranciscensis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653248__bin.7 99.38271605 0 58 1820650 38.69 48280 SRS5653248 SRR10454485 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LeechJ_2020__ERS3967740__bin.10 LeechJ_2020__ERS3967740__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus parvulus sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653248__bin.5 99.375 0.625 65 1278579 34.48 31638 SRS5653248 SRR10454485 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653399__bin.4 LandisEA_2021__SRS5653399__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Fructilactobacillus Fructilactobacillus sanfranciscensis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653248__bin.1 93.47826087 1.358695652 31 1706706 43.8 91688 SRS5653248 SRR10454485 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653152__bin.2 LandisEA_2021__SRS5653152__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Furfurilactobacillus Furfurilactobacillus milii sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653250__bin.1 97.5 0.625 34 1120543 34.48 65432 SRS5653250 SRR10454484 Canada PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653399__bin.4 LandisEA_2021__SRS5653399__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Fructilactobacillus Fructilactobacillus sanfranciscensis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653255__bin.5 50.61728395 0 14 716767 38.68 105216 SRS5653255 SRR10454483 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653132__bin.1 LandisEA_2021__SRS5653132__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus inopinatus sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653276__bin.1 98.75 0.625 30 1130135 34.53 58400 SRS5653276 SRR10454489 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653399__bin.4 LandisEA_2021__SRS5653399__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Fructilactobacillus Fructilactobacillus sanfranciscensis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653283__bin.7 82.1875 0 19 1106703 46 93880 SRS5653283 SRR10454488 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653283__bin.8 50 0 3 780463 45.58 265167 SRS5653283 SRR10454488 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653283__bin.1 65.14522822 0 19 2596531 41.33 344250 SRS5653283 SRR10454488 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. YuY_2022__SRR16950702__bin.15 LandisEA_2021__SRS5653283__bin.1 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus altitudinis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653318__bin.2 99.0625 0 35 2192906 46.27 114151 SRS5653318 SRR10454519 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653318__bin.1 94.44444444 2.520576132 237 3156263 44.56 18180 SRS5653318 SRR10454519 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. FalardeauJ_2023__SRR20811279__bin.3 LandisEA_2021__SRS5653094__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653333__bin.2 99.0625 0 27 2208089 46.3 123914 SRS5653333 SRR10454482 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653333__bin.1 99.18478261 1.358695652 124 2476765 43.16 31126 SRS5653333 SRR10454482 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653333__bin.1 LandisEA_2021__SRS5653333__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus coryniformis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653346__bin.4 98.4375 0 33 2203011 46.33 96449 SRS5653346 SRR10454481 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653346__bin.5 98.14814815 3.086419753 75 2938775 44.87 64881 SRS5653346 SRR10454481 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653374__bin.2 95.64544277 2.22513089 187 2376520 34.92 20131 SRS5653374 SRR10454512 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. GCF_001434985.1_ASM143498v1_genomic GCF_001434985.1_ASM143498v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus paralimentarius sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653374__bin.1 99.0625 1.25 34 2669899 53.01 124860 SRS5653374 SRR10454512 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653374__bin.1 LandisEA_2021__SRS5653374__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus faecigallinarum sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653374__bin.3 97.92475933 2.094240838 51 2551444 37.87 93055 SRS5653374 SRR10454512 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653374__bin.3 LandisEA_2021__SRS5653374__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus NA sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653388__bin.4 78.4375 0 15 1348075 46.09 149900 SRS5653388 SRR10454508 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653388__bin.2 50 0 3 781531 45.59 265167 SRS5653388 SRR10454508 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653391__bin.3 74.13793103 1.724137931 38 2402686 45.53 93395 SRS5653391 SRR10454511 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. FalardeauJ_2023__SRR20811279__bin.3 LandisEA_2021__SRS5653391__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653391__bin.5 98.42931937 1.67539267 143 2410095 35.03 32060 SRS5653391 SRR10454511 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. GCF_001434985.1_ASM143498v1_genomic GCF_001434985.1_ASM143498v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus paralimentarius sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653391__bin.6 54.72636816 0 3 1100071 54.23 768030 SRS5653391 SRR10454511 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. SRR10454511C706_acetobacter_assembly SRR10454511C706_acetobacter_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653393__bin.2 99.0625 0.15625 32 2255190 46.24 123770 SRS5653393 SRR10454510 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653393__bin.1 55.47839506 0.925925926 304 1446999 45.35 5911 SRS5653393 SRR10454510 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. FalardeauJ_2023__SRR20811279__bin.3 LandisEA_2021__SRS5653393__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653396__bin.8 91.97530864 2.160493827 36 2858909 44.83 112617 SRS5653396 SRR10454509 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653396__bin.5 89.0625 0.625 27 1265870 45.65 73630 SRS5653396 SRR10454509 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653396__bin.3 55.72139303 0 7 1411120 58.42 356990 SRS5653396 SRR10454509 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. MortensenS_xxxx__WK067-1-L-48h-05C1_S71__bin.5 SRR10454509C293_malorum_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter malorum sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653396__bin.15 54.72636816 0 4 1104667 54.24 768134 SRS5653396 SRR10454509 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. SRR10454511C706_acetobacter_assembly SRR10454511C706_acetobacter_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653399__bin.4 99.375 0.625 37 1250734 34.53 65432 SRS5653399 SRR10454497 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653399__bin.4 LandisEA_2021__SRS5653399__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Fructilactobacillus Fructilactobacillus sanfranciscensis sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653399__bin.3 92.11956522 0.27173913 14 1419262 43.55 226864 SRS5653399 SRR10454497 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. LandisEA_2021__SRS5653152__bin.2 LandisEA_2021__SRS5653399__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Furfurilactobacillus Furfurilactobacillus milii sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days LandisEA_2021__SRS5653399__bin.1 51.24378109 0 2 1006029 58.62 749546 SRS5653399 SRR10454497 USA PRJNA589612 SRP230115 NCBI Landis, E.A., Oliverio, A.M., McKenney, E.A., Nichols, L.M., Kfoury, N., Biango-Daniels, M., Shell, L.K., Madden, A.A., Shapiro, L., Sakunala, S., et al. (2021). The diversity and function of sourdough starter microbiomes. eLife 10. 10.7554/eLife.61644. G_35_1B_malorum_assembly LandisEA_2021__SRS5652903__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter malorum A sourdough sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days MAG_17 98.82 1.58 162 2929155 46.8 30609 SAMN14419043 ['SRR11362479', 'SRR11362480', 'SRR11362481', 'SRR11362492', 'SRR11362493'] Korea PRJNA613738 SRP253535 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_406 MAG_17 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Idiomarina NA soy sauce soy_sauce Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months MAG_33 99 3 188 4257025 36.28 34299 SAMN14419043 ['SRR11362479', 'SRR11362480', 'SRR11362481', 'SRR11362492', 'SRR11362493'] Korea PRJNA613738 SRP253535 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_33 MAG_33 Bacillota;Bacilli;Bacillales_D;Amphibacillaceae;Virgibacillus Virgibacillus dokdonensis soy sauce soy_sauce Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months MAG_35 99.57 0 38 2704170 60.27 109050 SAMN14419043 ['SRR11362479', 'SRR11362480', 'SRR11362481', 'SRR11362492', 'SRR11362493'] Korea PRJNA613738 SRP253535 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_35 MAG_35 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Vreelandella NA soy sauce soy_sauce Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months MAG_99 96.42 2.76 201 2623152 38.21 22759 SAMN14419043 ['SRR11362479', 'SRR11362480', 'SRR11362481', 'SRR11362492', 'SRR11362493'] Korea PRJNA613738 SRP253535 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0139-001_Enterococcus_lactis_CICC_24101 MAG_125 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B lactis soy sauce soy_sauce Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months MAG_100 95.77 1.58 42 2903437 27.32 134502 SAMN14419043 ['SRR11362479', 'SRR11362480', 'SRR11362481', 'SRR11362492', 'SRR11362493'] Korea PRJNA613738 SRP253535 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_100 MAG_100 Bacillota;Clostridia;Tissierellales;SIT17;Anaeromonas Anaeromonas massiliensis A soy sauce soy_sauce Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months MAG_103 85.68 7.22 596 2504266 35.35 5228 SAMN14419043 ['SRR11362479', 'SRR11362480', 'SRR11362481', 'SRR11362492', 'SRR11362493'] Korea PRJNA613738 SRP253535 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. AlvarezOrdonezA_xxxx__Q05-22__bin.4 MAG_103 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus soy sauce soy_sauce Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months MAG_112 99.45 1.1 43 2899132 32.93 180495 SAMN14419043 ['SRR11362479', 'SRR11362480', 'SRR11362481', 'SRR11362492', 'SRR11362493'] Korea PRJNA613738 SRP253535 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_112 MAG_112 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus nepalensis soy sauce soy_sauce Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months MAG_120 50.21 0.26 536 1317744 51.22 2490 SAMN14419043 ['SRR11362479', 'SRR11362480', 'SRR11362481', 'SRR11362492', 'SRR11362493'] Korea PRJNA613738 SRP253535 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_546 MAG_120 Bacillota;Bacilli;Thermoactinomycetales;DSM-45169;Kroppenstedtia Kroppenstedtia sp959600065 soy sauce soy_sauce Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months MAG_159 93.53 3.53 349 3344866 64.08 13463 SAMN14419043 ['SRR11362479', 'SRR11362480', 'SRR11362481', 'SRR11362492', 'SRR11362493'] Korea PRJNA613738 SRP253535 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_159 MAG_159 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Halomonas Halomonas halodenitrificans soy sauce soy_sauce Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months MAG_161 99.57 0.31 76 3276997 57.93 81565 SAMN14419043 ['SRR11362479', 'SRR11362480', 'SRR11362481', 'SRR11362492', 'SRR11362493'] Korea PRJNA613738 SRP253535 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_161 MAG_161 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter NA soy sauce soy_sauce Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months MAG_177 99.34 0.33 83 2705322 35.43 54141 SAMN14419043 ['SRR11362479', 'SRR11362480', 'SRR11362481', 'SRR11362492', 'SRR11362493'] Korea PRJNA613738 SRP253535 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_177 MAG_177 Bacillota;Bacilli;Bacillales_D;Amphibacillaceae;Paraliobacillus NA soy sauce soy_sauce Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months MAG_184 66.32 1.83 262 2033153 28.43 10051 SAMN14419043 ['SRR11362479', 'SRR11362480', 'SRR11362481', 'SRR11362492', 'SRR11362493'] Korea PRJNA613738 SRP253535 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_184 MAG_184 Bacillota;Clostridia;Peptostreptococcales;Natronincolaceae;Alkaliphilus_B Alkaliphilus B sp015978205 soy sauce soy_sauce Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months MAG_188 97.18 0 78 2798090 31.11 52040 SAMN14419043 ['SRR11362479', 'SRR11362480', 'SRR11362481', 'SRR11362492', 'SRR11362493'] Korea PRJNA613738 SRP253535 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_188 MAG_188 Bacillota;Clostridia;Tissierellales;Clostridiisalibacteraceae;Clostridiisalibacter Clostridiisalibacter paucivorans soy sauce soy_sauce Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months MAG_483 95.47 0.87 65 2876596 56.69 72162 SAMN14419043 ['SRR11362479', 'SRR11362480', 'SRR11362481', 'SRR11362492', 'SRR11362493'] Korea PRJNA613738 SRP253535 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_483 MAG_483 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella flava soy sauce soy_sauce Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months MAG_484 97.24 2.47 393 3387228 54.98 13791 SAMN14419043 ['SRR11362479', 'SRR11362480', 'SRR11362481', 'SRR11362492', 'SRR11362493'] Korea PRJNA613738 SRP253535 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_484 MAG_484 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter Marinobacter piscensis soy sauce soy_sauce Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months MAG_485 85.2 2.04 336 2163701 54.77 8429 SAMN14419043 ['SRR11362479', 'SRR11362480', 'SRR11362481', 'SRR11362492', 'SRR11362493'] Korea PRJNA613738 SRP253535 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_485 MAG_485 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium stationis soy sauce soy_sauce Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months MAG_486 52.59 1.72 278 1830630 55.24 8158 SAMN14419043 ['SRR11362479', 'SRR11362480', 'SRR11362481', 'SRR11362492', 'SRR11362493'] Korea PRJNA613738 SRP253535 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_484 MAG_486 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Oleiphilaceae;Marinobacter Marinobacter piscensis soy sauce soy_sauce Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months MAG_487 99.77 0.68 36 3058553 68.94 189461 SAMN14419043 ['SRR11362479', 'SRR11362480', 'SRR11362481', 'SRR11362492', 'SRR11362493'] Korea PRJNA613738 SRP253535 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_487 MAG_487 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium kalidii soy sauce soy_sauce Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months MAG_488 54.03 9.42 1168 3381382 38.87 2813 SAMN14419043 ['SRR11362479', 'SRR11362480', 'SRR11362481', 'SRR11362492', 'SRR11362493'] Korea PRJNA613738 SRP253535 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_488 MAG_488 Bacillota;Bacilli;Bacillales_B;Caldibacillaceae;Caldifermentibacillus NA soy sauce soy_sauce Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months MAG_489 96.17 3.19 201 2506286 34.68 18317 SAMN14419043 ['SRR11362479', 'SRR11362480', 'SRR11362481', 'SRR11362492', 'SRR11362493'] Korea PRJNA613738 SRP253535 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_489 MAG_489 Bacillota;Halanaerobiia;Halanaerobiales;Halanaerobiaceae;Halanaerobium NA soy sauce soy_sauce Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months MAG_490 97.02 1.63 84 4174964 45.86 96484 SAMN14419043 ['SRR11362479', 'SRR11362480', 'SRR11362481', 'SRR11362492', 'SRR11362493'] Korea PRJNA613738 SRP253535 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_490 MAG_490 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus sonorensis soy sauce soy_sauce Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months MAG_491 98.68 0 108 2254696 35.62 38753 SAMN14419043 ['SRR11362479', 'SRR11362480', 'SRR11362481', 'SRR11362492', 'SRR11362493'] Korea PRJNA613738 SRP253535 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. AlvarezOrdonezA_xxxx__Q05-22__bin.4 MAG_491 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus soy sauce soy_sauce Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months MAG_492 99.14 1.78 74 3480362 60.73 92689 SAMN14419043 ['SRR11362479', 'SRR11362480', 'SRR11362481', 'SRR11362492', 'SRR11362493'] Korea PRJNA613738 SRP253535 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_023091965.1_ASM2309196v1_genomic MAG_492 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Chromohalobacter Chromohalobacter moromii soy sauce soy_sauce Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months MAG_493 99.38 2.77 121 3239899 45.94 88711 SAMN14419043 ['SRR11362479', 'SRR11362480', 'SRR11362481', 'SRR11362492', 'SRR11362493'] Korea PRJNA613738 SRP253535 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_406 MAG_493 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Alteromonadaceae;Idiomarina NA soy sauce soy_sauce Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months MAG_494 52.74 1.75 795 2725647 62.67 3651 SAMN14419043 ['SRR11362479', 'SRR11362480', 'SRR11362481', 'SRR11362492', 'SRR11362493'] Korea PRJNA613738 SRP253535 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_159 MAG_494 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Halomonadaceae;Halomonas Halomonas halodenitrificans soy sauce soy_sauce Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months KumarJ_2019__SRS4562500__bin.15 93.49596669 1.712204007 267 2952862 37.68 14795 SRS4562500 SRR8830669 India PRJNA529966 SRP190006 NCBI Kumar, J., Sharma, N., Kaushal, G., Samurailatpam, S., Sahoo, D., Rai, A.K., and Singh, S.P. (2019). Metagenomic Insights Into the Taxonomic and Functional Features of Kinema, a Traditional Fermented Soybean Product of Sikkim Himalaya. Front. Microbiol. 10, 1744. MAG_608 MAG_608 Bacillota;Bacilli;Bacillales_B;Caldibacillaceae;Caldifermentibacillus Caldifermentibacillus hisashii kinema soybean Plant Legumes soybean soybean paste semi-solid none mixed mesophilic 1-3 days KumarJ_2019__SRS4562500__bin.25 94.81558125 2.232704403 219 2604204 38.27 16603 SRS4562500 SRR8830669 India PRJNA529966 SRP190006 NCBI Kumar, J., Sharma, N., Kaushal, G., Samurailatpam, S., Sahoo, D., Rai, A.K., and Singh, S.P. (2019). Metagenomic Insights Into the Taxonomic and Functional Features of Kinema, a Traditional Fermented Soybean Product of Sikkim Himalaya. Front. Microbiol. 10, 1744. ODFM-BA-A-0139-001_Enterococcus_lactis_CICC_24101 KumarJ_2019__SRS4562500__bin.25 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B lactis kinema soybean Plant Legumes soybean soybean paste semi-solid none mixed mesophilic 1-3 days KumarJ_2019__SRS4562500__bin.13 93.37016575 3.810966554 179 3105032 31.69 40043 SRS4562500 SRR8830669 India PRJNA529966 SRP190006 NCBI Kumar, J., Sharma, N., Kaushal, G., Samurailatpam, S., Sahoo, D., Rai, A.K., and Singh, S.P. (2019). Metagenomic Insights Into the Taxonomic and Functional Features of Kinema, a Traditional Fermented Soybean Product of Sikkim Himalaya. Front. Microbiol. 10, 1744. KharnaiorP_2023__SRR22859379__bin.2 MAG_593 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Mammaliicoccus Mammaliicoccus lentus kinema soybean Plant Legumes soybean soybean paste semi-solid none mixed mesophilic 1-3 days KumarJ_2019__SRS4562500__bin.17 68.08277987 0.19731306 235 2522965 47.22 14444 SRS4562500 SRR8830669 India PRJNA529966 SRP190006 NCBI Kumar, J., Sharma, N., Kaushal, G., Samurailatpam, S., Sahoo, D., Rai, A.K., and Singh, S.P. (2019). Metagenomic Insights Into the Taxonomic and Functional Features of Kinema, a Traditional Fermented Soybean Product of Sikkim Himalaya. Front. Microbiol. 10, 1744. TomarS_2023__SRR15925267__bin.15 TomarS_2023__SRR15925267__bin.15 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus licheniformis kinema soybean Plant Legumes soybean soybean paste semi-solid none mixed mesophilic 1-3 days KumarJ_2019__SRS4562500__bin.6 97.2972973 0 25 3770096 37.77 242171 SRS4562500 SRR8830669 India PRJNA529966 SRP190006 NCBI Kumar, J., Sharma, N., Kaushal, G., Samurailatpam, S., Sahoo, D., Rai, A.K., and Singh, S.P. (2019). Metagenomic Insights Into the Taxonomic and Functional Features of Kinema, a Traditional Fermented Soybean Product of Sikkim Himalaya. Front. Microbiol. 10, 1744. MAG_8 MAG_8 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Proteus Proteus cibarius kinema soybean Plant Legumes soybean soybean paste semi-solid none mixed mesophilic 1-3 days KumarJ_2019__SRS4562501__bin.6 96.88706707 3.867403315 54 2918376 31.77 128860 SRS4562501 SRR8830667 India PRJNA529966 SRP190006 NCBI Kumar, J., Sharma, N., Kaushal, G., Samurailatpam, S., Sahoo, D., Rai, A.K., and Singh, S.P. (2019). Metagenomic Insights Into the Taxonomic and Functional Features of Kinema, a Traditional Fermented Soybean Product of Sikkim Himalaya. Front. Microbiol. 10, 1744. KharnaiorP_2023__SRR22859379__bin.2 MAG_593 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Mammaliicoccus Mammaliicoccus lentus kinema soybean Plant Legumes soybean soybean paste semi-solid none mixed mesophilic 1-3 days KumarJ_2019__SRS4562501__bin.1 76.20689655 0.862068966 265 2166269 32.39 12096 SRS4562501 SRR8830667 India PRJNA529966 SRP190006 NCBI Kumar, J., Sharma, N., Kaushal, G., Samurailatpam, S., Sahoo, D., Rai, A.K., and Singh, S.P. (2019). Metagenomic Insights Into the Taxonomic and Functional Features of Kinema, a Traditional Fermented Soybean Product of Sikkim Himalaya. Front. Microbiol. 10, 1744. MAG_594 MAG_594 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Mammaliicoccus Mammaliicoccus sciuri kinema soybean Plant Legumes soybean soybean paste semi-solid none mixed mesophilic 1-3 days KumarJ_2019__SRS4562501__bin.2 59.48275862 2.586206897 711 3251990 31.51 5403 SRS4562501 SRR8830667 India PRJNA529966 SRP190006 NCBI Kumar, J., Sharma, N., Kaushal, G., Samurailatpam, S., Sahoo, D., Rai, A.K., and Singh, S.P. (2019). Metagenomic Insights Into the Taxonomic and Functional Features of Kinema, a Traditional Fermented Soybean Product of Sikkim Himalaya. Front. Microbiol. 10, 1744. KharnaiorP_2023__SRR22859377__bin.9 KumarJ_2019__SRS4562501__bin.2 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus Vagococcus fluvialis kinema soybean Plant Legumes soybean soybean paste semi-solid none mixed mesophilic 1-3 days KumarJ_2019__SRS4562502__bin.13 75 1.38121547 112 1411185 31.75 21118 SRS4562502 SRR8830666 India PRJNA529966 SRP190006 NCBI Kumar, J., Sharma, N., Kaushal, G., Samurailatpam, S., Sahoo, D., Rai, A.K., and Singh, S.P. (2019). Metagenomic Insights Into the Taxonomic and Functional Features of Kinema, a Traditional Fermented Soybean Product of Sikkim Himalaya. Front. Microbiol. 10, 1744. KharnaiorP_2023__SRR22859379__bin.2 MAG_593 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Mammaliicoccus Mammaliicoccus lentus kinema soybean Plant Legumes soybean soybean paste semi-solid none mixed mesophilic 1-3 days KumarJ_2019__SRS4562502__bin.4 74.13793103 0 310 3344331 43.79 15350 SRS4562502 SRR8830666 India PRJNA529966 SRP190006 NCBI Kumar, J., Sharma, N., Kaushal, G., Samurailatpam, S., Sahoo, D., Rai, A.K., and Singh, S.P. (2019). Metagenomic Insights Into the Taxonomic and Functional Features of Kinema, a Traditional Fermented Soybean Product of Sikkim Himalaya. Front. Microbiol. 10, 1744. MotaGutierrezJ_2021__SRR11602153__bin.4 MAG_592 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus subtilis kinema soybean Plant Legumes soybean soybean paste semi-solid none mixed mesophilic 1-3 days KumarJ_2019__SRS4562502__bin.8 86.20689655 1.724137931 90 2683424 33.04 75537 SRS4562502 SRR8830666 India PRJNA529966 SRP190006 NCBI Kumar, J., Sharma, N., Kaushal, G., Samurailatpam, S., Sahoo, D., Rai, A.K., and Singh, S.P. (2019). Metagenomic Insights Into the Taxonomic and Functional Features of Kinema, a Traditional Fermented Soybean Product of Sikkim Himalaya. Front. Microbiol. 10, 1744. KumarJ_2019__SRS4562503__bin.5 KumarJ_2019__SRS4562503__bin.5 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus gallinarum kinema soybean Plant Legumes soybean soybean paste semi-solid none mixed mesophilic 1-3 days KumarJ_2019__SRS4562502__bin.5 80.29525398 3.484320719 542 3188619 46.52 6961 SRS4562502 SRR8830666 India PRJNA529966 SRP190006 NCBI Kumar, J., Sharma, N., Kaushal, G., Samurailatpam, S., Sahoo, D., Rai, A.K., and Singh, S.P. (2019). Metagenomic Insights Into the Taxonomic and Functional Features of Kinema, a Traditional Fermented Soybean Product of Sikkim Himalaya. Front. Microbiol. 10, 1744. TomarS_2023__SRR15925267__bin.15 TomarS_2023__SRR15925267__bin.15 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus licheniformis kinema soybean Plant Legumes soybean soybean paste semi-solid none mixed mesophilic 1-3 days KumarJ_2019__SRS4562502__bin.9 88.18594735 1.340996169 27 2073242 41.55 111946 SRS4562502 SRR8830666 India PRJNA529966 SRP190006 NCBI Kumar, J., Sharma, N., Kaushal, G., Samurailatpam, S., Sahoo, D., Rai, A.K., and Singh, S.P. (2019). Metagenomic Insights Into the Taxonomic and Functional Features of Kinema, a Traditional Fermented Soybean Product of Sikkim Himalaya. Front. Microbiol. 10, 1744. KumarJ_2019__SRS4562503__bin.9 KumarJ_2019__SRS4562503__bin.9 Bacillota;Bacilli;Staphylococcales;Salinicoccaceae;Jeotgalicoccus Jeotgalicoccus nanhaiensis kinema soybean Plant Legumes soybean soybean paste semi-solid none mixed mesophilic 1-3 days KumarJ_2019__SRS4562502__bin.3 83.33333333 1.724137931 340 2533579 32.36 9807 SRS4562502 SRR8830666 India PRJNA529966 SRP190006 NCBI Kumar, J., Sharma, N., Kaushal, G., Samurailatpam, S., Sahoo, D., Rai, A.K., and Singh, S.P. (2019). Metagenomic Insights Into the Taxonomic and Functional Features of Kinema, a Traditional Fermented Soybean Product of Sikkim Himalaya. Front. Microbiol. 10, 1744. MAG_594 MAG_594 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Mammaliicoccus Mammaliicoccus sciuri kinema soybean Plant Legumes soybean soybean paste semi-solid none mixed mesophilic 1-3 days KumarJ_2019__SRS4562502__bin.1 91.42384106 2.33995585 337 3046136 32.16 14527 SRS4562502 SRR8830666 India PRJNA529966 SRP190006 NCBI Kumar, J., Sharma, N., Kaushal, G., Samurailatpam, S., Sahoo, D., Rai, A.K., and Singh, S.P. (2019). Metagenomic Insights Into the Taxonomic and Functional Features of Kinema, a Traditional Fermented Soybean Product of Sikkim Himalaya. Front. Microbiol. 10, 1744. KharnaiorP_2023__SRR22859377__bin.9 KumarJ_2019__SRS4562502__bin.1 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus Vagococcus fluvialis kinema soybean Plant Legumes soybean soybean paste semi-solid none mixed mesophilic 1-3 days KumarJ_2019__SRS4562503__bin.3 97.84644195 0.63670412 189 2713558 37.65 19706 SRS4562503 SRR8830668 India PRJNA529966 SRP190006 NCBI Kumar, J., Sharma, N., Kaushal, G., Samurailatpam, S., Sahoo, D., Rai, A.K., and Singh, S.P. (2019). Metagenomic Insights Into the Taxonomic and Functional Features of Kinema, a Traditional Fermented Soybean Product of Sikkim Himalaya. Front. Microbiol. 10, 1744. MASTER_WP4_CSIC_1__P2235_73323__bin.9 MAG_598 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis kinema soybean Plant Legumes soybean soybean paste semi-solid none mixed mesophilic 1-3 days KumarJ_2019__SRS4562503__bin.1 88.5270846 2.075471698 136 2797547 41 31457 SRS4562503 SRR8830668 India PRJNA529966 SRP190006 NCBI Kumar, J., Sharma, N., Kaushal, G., Samurailatpam, S., Sahoo, D., Rai, A.K., and Singh, S.P. (2019). Metagenomic Insights Into the Taxonomic and Functional Features of Kinema, a Traditional Fermented Soybean Product of Sikkim Himalaya. Front. Microbiol. 10, 1744. YulandiA_2020__SRS6115053__bin.10 YulandiA_2020__SRS6115053__bin.10 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_D Enterococcus D gallinarum kinema soybean Plant Legumes soybean soybean paste semi-solid none mixed mesophilic 1-3 days KumarJ_2019__SRS4562503__bin.5 98.89502762 1.657458564 60 2800258 32.96 93343 SRS4562503 SRR8830668 India PRJNA529966 SRP190006 NCBI Kumar, J., Sharma, N., Kaushal, G., Samurailatpam, S., Sahoo, D., Rai, A.K., and Singh, S.P. (2019). Metagenomic Insights Into the Taxonomic and Functional Features of Kinema, a Traditional Fermented Soybean Product of Sikkim Himalaya. Front. Microbiol. 10, 1744. KumarJ_2019__SRS4562503__bin.5 KumarJ_2019__SRS4562503__bin.5 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus gallinarum kinema soybean Plant Legumes soybean soybean paste semi-solid none mixed mesophilic 1-3 days KumarJ_2019__SRS4562503__bin.9 89.65517241 1.340996169 14 2289196 41.13 324858 SRS4562503 SRR8830668 India PRJNA529966 SRP190006 NCBI Kumar, J., Sharma, N., Kaushal, G., Samurailatpam, S., Sahoo, D., Rai, A.K., and Singh, S.P. (2019). Metagenomic Insights Into the Taxonomic and Functional Features of Kinema, a Traditional Fermented Soybean Product of Sikkim Himalaya. Front. Microbiol. 10, 1744. KumarJ_2019__SRS4562503__bin.9 KumarJ_2019__SRS4562503__bin.9 Bacillota;Bacilli;Staphylococcales;Salinicoccaceae;Jeotgalicoccus Jeotgalicoccus nanhaiensis kinema soybean Plant Legumes soybean soybean paste semi-solid none mixed mesophilic 1-3 days KumarJ_2019__SRS4562503__bin.8 58.90690905 1.104972376 323 1348927 32.19 4967 SRS4562503 SRR8830668 India PRJNA529966 SRP190006 NCBI Kumar, J., Sharma, N., Kaushal, G., Samurailatpam, S., Sahoo, D., Rai, A.K., and Singh, S.P. (2019). Metagenomic Insights Into the Taxonomic and Functional Features of Kinema, a Traditional Fermented Soybean Product of Sikkim Himalaya. Front. Microbiol. 10, 1744. MAG_594 KumarJ_2019__SRS4562503__bin.8 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Mammaliicoccus Mammaliicoccus sciuri kinema soybean Plant Legumes soybean soybean paste semi-solid none mixed mesophilic 1-3 days KumarJ_2019__SRS4562503__bin.4 74.12703191 2.649006623 533 1815267 32.16 3820 SRS4562503 SRR8830668 India PRJNA529966 SRP190006 NCBI Kumar, J., Sharma, N., Kaushal, G., Samurailatpam, S., Sahoo, D., Rai, A.K., and Singh, S.P. (2019). Metagenomic Insights Into the Taxonomic and Functional Features of Kinema, a Traditional Fermented Soybean Product of Sikkim Himalaya. Front. Microbiol. 10, 1744. KharnaiorP_2023__SRR22859377__bin.9 MAG_602 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus Vagococcus fluvialis kinema soybean Plant Legumes soybean soybean paste semi-solid none mixed mesophilic 1-3 days LeechJ_2020__ERS3967698__bin.1 99.00557445 0.394828386 63 4446660 55.49 117660 ERS3967698 ERR4757813 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. FontanaF_2023__SRR20746854__bin.2 LeechJ_2020__ERS3967698__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter Enterobacter intestinihominis tempeh soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 days LeechJ_2020__ERS3967698__bin.6 62.87878788 3.50877193 78 3760053 55.83 85131 ERS3967698 ERR4757813 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. FontanaF_2023__SRR20746851__bin.6 FontanaF_2023__SRR20746851__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella grimontii tempeh soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 days LeechJ_2020__ERS3967698__bin.4 58.93141946 2.631578947 713 5234531 58.25 10108 ERS3967698 ERR4757813 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MASTER_WP4_CSIC_2__P2587__bin.9 LeechJ_2020__ERS3967698__bin.4 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella terrigena tempeh soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 days SulaimanJ_2014__SRS386960__bin.1 51.68794651 0.81799591 382 1121771 44.99 3067 SRS386960 SRR648391 Malaysia PRJNA185981 SRP017928 NCBI Sulaiman, J., Gan, H.M., Yin, W.-F., and Chan, K.-G. (2014). Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine. Front. Microbiol. 5, 556. GCF_004771075.1_ASM477107v1_genomic SulaimanJ_2014__SRS398261__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella confusa soy sauce soybean Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months SulaimanJ_2014__SRS398261__bin.3 95.60327198 0.858895706 166 1877789 45.02 19411 SRS398261 SRR765682 Malaysia PRJNA185981 SRP017928 NCBI Sulaiman, J., Gan, H.M., Yin, W.-F., and Chan, K.-G. (2014). Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine. Front. Microbiol. 5, 556. GCF_004771075.1_ASM477107v1_genomic SulaimanJ_2014__SRS398261__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella confusa soy sauce soybean Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months SulaimanJ_2014__SRS398261__bin.6 53.9184953 0.862068966 359 3108900 46.86 13112 SRS398261 SRR765682 Malaysia PRJNA185981 SRP017928 NCBI Sulaiman, J., Gan, H.M., Yin, W.-F., and Chan, K.-G. (2014). Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine. Front. Microbiol. 5, 556. ODFM-BA-A-0009-005_Bacillus_velezensis_YJ11-1-4 SulaimanJ_2014__SRS398269__bin.3 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus velezensis soy sauce soybean Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months SulaimanJ_2014__SRS398265__bin.7 94.1206544 0.920245399 147 1863412 44.96 27779 SRS398265 SRR765683 Malaysia PRJNA185981 SRP017928 NCBI Sulaiman, J., Gan, H.M., Yin, W.-F., and Chan, K.-G. (2014). Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine. Front. Microbiol. 5, 556. GCF_004771075.1_ASM477107v1_genomic SulaimanJ_2014__SRS398261__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella confusa soy sauce soybean Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months SulaimanJ_2014__SRS398265__bin.2 70.64476607 1.761006289 566 1728592 38.9 3187 SRS398265 SRR765683 Malaysia PRJNA185981 SRP017928 NCBI Sulaiman, J., Gan, H.M., Yin, W.-F., and Chan, K.-G. (2014). Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine. Front. Microbiol. 5, 556. ODFM-BA-A-0139-001_Enterococcus_lactis_CICC_24101 SulaimanJ_2014__SRS398265__bin.2 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B lactis soy sauce soybean Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months SulaimanJ_2014__SRS398265__bin.4 95.09849532 1.759255042 352 3567959 46.82 13870 SRS398265 SRR765683 Malaysia PRJNA185981 SRP017928 NCBI Sulaiman, J., Gan, H.M., Yin, W.-F., and Chan, K.-G. (2014). Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine. Front. Microbiol. 5, 556. ODFM-BA-A-0009-005_Bacillus_velezensis_YJ11-1-4 SulaimanJ_2014__SRS398269__bin.3 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus velezensis soy sauce soybean Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months SulaimanJ_2014__SRS398265__bin.6 82 0.9 391 9668060 45.01 41451 SRS398265 SRR765683 Malaysia PRJNA185981 SRP017928 NCBI Sulaiman, J., Gan, H.M., Yin, W.-F., and Chan, K.-G. (2014). Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine. Front. Microbiol. 5, 556. MASTER_WP4_FFoQSI_2__VB10-22__bin.15 SulaimanJ_2014__SRS398267__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Trichomonascaceae;Wickerhamiella Wickerhamiella versatilis soy sauce soybean Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months SulaimanJ_2014__SRS398266__bin.8 95.19427403 0.988411725 130 1895968 45.06 25048 SRS398266 SRR765684 Malaysia PRJNA185981 SRP017928 NCBI Sulaiman, J., Gan, H.M., Yin, W.-F., and Chan, K.-G. (2014). Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine. Front. Microbiol. 5, 556. GCF_004771075.1_ASM477107v1_genomic SulaimanJ_2014__SRS398261__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella confusa soy sauce soybean Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months SulaimanJ_2014__SRS398266__bin.1 93.13642584 4.93174732 860 4658317 58.42 7112 SRS398266 SRR765684 Malaysia PRJNA185981 SRP017928 NCBI Sulaiman, J., Gan, H.M., Yin, W.-F., and Chan, K.-G. (2014). Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine. Front. Microbiol. 5, 556. MAG_19 SulaimanJ_2014__SRS398266__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella pneumoniae soy sauce soybean Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months SulaimanJ_2014__SRS398266__bin.6 99.11949686 3.962264151 323 2837320 38.21 14807 SRS398266 SRR765684 Malaysia PRJNA185981 SRP017928 NCBI Sulaiman, J., Gan, H.M., Yin, W.-F., and Chan, K.-G. (2014). Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine. Front. Microbiol. 5, 556. ODFM-BA-A-0139-001_Enterococcus_lactis_CICC_24101 MAG_125 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B lactis soy sauce soybean Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months SulaimanJ_2014__SRS398266__bin.3 98.10317437 1.463618776 357 3915047 46.36 17294 SRS398266 SRR765684 Malaysia PRJNA185981 SRP017928 NCBI Sulaiman, J., Gan, H.M., Yin, W.-F., and Chan, K.-G. (2014). Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine. Front. Microbiol. 5, 556. ODFM-BA-A-0009-005_Bacillus_velezensis_YJ11-1-4 SulaimanJ_2014__SRS398269__bin.3 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus velezensis soy sauce soybean Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months SulaimanJ_2014__SRS398266__bin.2 83.5 1 36 9742276 45.01 873748 SRS398266 SRR765684 Malaysia PRJNA185981 SRP017928 NCBI Sulaiman, J., Gan, H.M., Yin, W.-F., and Chan, K.-G. (2014). Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine. Front. Microbiol. 5, 556. MASTER_WP4_FFoQSI_2__VB10-22__bin.15 SulaimanJ_2014__SRS398267__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Trichomonascaceae;Wickerhamiella Wickerhamiella versatilis soy sauce soybean Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months SulaimanJ_2014__SRS398267__bin.8 93.35378323 1.226993865 126 1877727 44.97 27735 SRS398267 SRR765685 Malaysia PRJNA185981 SRP017928 NCBI Sulaiman, J., Gan, H.M., Yin, W.-F., and Chan, K.-G. (2014). Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine. Front. Microbiol. 5, 556. GCF_004771075.1_ASM477107v1_genomic SulaimanJ_2014__SRS398261__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella confusa soy sauce soybean Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months SulaimanJ_2014__SRS398267__bin.9 97.83018868 2.21711946 267 2604189 38.2 18461 SRS398267 SRR765685 Malaysia PRJNA185981 SRP017928 NCBI Sulaiman, J., Gan, H.M., Yin, W.-F., and Chan, K.-G. (2014). Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine. Front. Microbiol. 5, 556. ODFM-BA-A-0139-001_Enterococcus_lactis_CICC_24101 MAG_125 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B lactis soy sauce soybean Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months SulaimanJ_2014__SRS398267__bin.4 96.87398337 2.154971397 318 3664239 46.68 17338 SRS398267 SRR765685 Malaysia PRJNA185981 SRP017928 NCBI Sulaiman, J., Gan, H.M., Yin, W.-F., and Chan, K.-G. (2014). Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine. Front. Microbiol. 5, 556. ODFM-BA-A-0009-005_Bacillus_velezensis_YJ11-1-4 SulaimanJ_2014__SRS398269__bin.3 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus velezensis soy sauce soybean Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months SulaimanJ_2014__SRS398267__bin.6 83.5 1 32 9748755 45.02 876651 SRS398267 SRR765685 Malaysia PRJNA185981 SRP017928 NCBI Sulaiman, J., Gan, H.M., Yin, W.-F., and Chan, K.-G. (2014). Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine. Front. Microbiol. 5, 556. MASTER_WP4_FFoQSI_2__VB10-22__bin.15 SulaimanJ_2014__SRS398267__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Trichomonascaceae;Wickerhamiella Wickerhamiella versatilis soy sauce soybean Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months SulaimanJ_2014__SRS398268__bin.7 85.53169734 0.613496933 97 1811866 44.9 45558 SRS398268 SRR765686 Malaysia PRJNA185981 SRP017928 NCBI Sulaiman, J., Gan, H.M., Yin, W.-F., and Chan, K.-G. (2014). Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine. Front. Microbiol. 5, 556. GCF_004771075.1_ASM477107v1_genomic SulaimanJ_2014__SRS398261__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella confusa soy sauce soybean Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months SulaimanJ_2014__SRS398268__bin.5 96.60151032 2.316383764 385 3861666 46.38 15830 SRS398268 SRR765686 Malaysia PRJNA185981 SRP017928 NCBI Sulaiman, J., Gan, H.M., Yin, W.-F., and Chan, K.-G. (2014). Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine. Front. Microbiol. 5, 556. ODFM-BA-A-0009-005_Bacillus_velezensis_YJ11-1-4 SulaimanJ_2014__SRS398269__bin.3 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus velezensis soy sauce soybean Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months SulaimanJ_2014__SRS398268__bin.2 83.4 1 28 9717354 45 598751 SRS398268 SRR765686 Malaysia PRJNA185981 SRP017928 NCBI Sulaiman, J., Gan, H.M., Yin, W.-F., and Chan, K.-G. (2014). Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine. Front. Microbiol. 5, 556. MASTER_WP4_FFoQSI_2__VB10-22__bin.15 SulaimanJ_2014__SRS398267__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Trichomonascaceae;Wickerhamiella Wickerhamiella versatilis soy sauce soybean Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months SulaimanJ_2014__SRS398269__bin.1 97.85276074 1.533742331 86 2091701 45 42192 SRS398269 SRR765687 Malaysia PRJNA185981 SRP017928 NCBI Sulaiman, J., Gan, H.M., Yin, W.-F., and Chan, K.-G. (2014). Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine. Front. Microbiol. 5, 556. GCF_004771075.1_ASM477107v1_genomic SulaimanJ_2014__SRS398261__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella confusa soy sauce soybean Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months SulaimanJ_2014__SRS398269__bin.5 61.74413556 0.55705301 589 1677139 38.19 2943 SRS398269 SRR765687 Malaysia PRJNA185981 SRP017928 NCBI Sulaiman, J., Gan, H.M., Yin, W.-F., and Chan, K.-G. (2014). Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine. Front. Microbiol. 5, 556. ODFM-BA-A-0139-001_Enterococcus_lactis_CICC_24101 SulaimanJ_2014__SRS398269__bin.5 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B lactis soy sauce soybean Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months SulaimanJ_2014__SRS398269__bin.3 97.90149906 0.785561687 312 3685336 46.68 17425 SRS398269 SRR765687 Malaysia PRJNA185981 SRP017928 NCBI Sulaiman, J., Gan, H.M., Yin, W.-F., and Chan, K.-G. (2014). Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine. Front. Microbiol. 5, 556. ODFM-BA-A-0009-005_Bacillus_velezensis_YJ11-1-4 SulaimanJ_2014__SRS398269__bin.3 Bacillota;Bacilli;Bacillales;Bacillaceae;Bacillus Bacillus velezensis soy sauce soybean Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months SulaimanJ_2014__SRS398269__bin.4 83.6 1 34 9737036 45.01 550557 SRS398269 SRR765687 Malaysia PRJNA185981 SRP017928 NCBI Sulaiman, J., Gan, H.M., Yin, W.-F., and Chan, K.-G. (2014). Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine. Front. Microbiol. 5, 556. MASTER_WP4_FFoQSI_2__VB10-22__bin.15 SulaimanJ_2014__SRS398267__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Trichomonascaceae;Wickerhamiella Wickerhamiella versatilis soy sauce soybean Plant Legumes soybean soybean liquid liquid low lactic mesophilic 6-12 months YulandiA_2020__SRS6115052__bin.29 77.00983718 4.187396352 487 1859959 55.59 4162 SRS6115052 SRR11036332 Indonesia PRJNA605305 SRP247539 NCBI Yulandi, A., Suwanto, A., Waturangi, D.E., and Wahyudi, A.T. (2020). Shotgun metagenomic analysis reveals new insights into bacterial community profiles in tempeh. BMC Res. Notes 13, 562. MortensenS_xxxx__WK027-1-L-48h-02I4_S14__bin.10 YulandiA_2020__SRS6115052__bin.29 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter indonesiensis tempeh soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 days YulandiA_2020__SRS6115052__bin.5 98.63387978 0 114 1673518 53.46 22544 SRS6115052 SRR11036332 Indonesia PRJNA605305 SRP247539 NCBI Yulandi, A., Suwanto, A., Waturangi, D.E., and Wahyudi, A.T. (2020). Shotgun metagenomic analysis reveals new insights into bacterial community profiles in tempeh. BMC Res. Notes 13, 562. FontanaF_2023__SRR20746839__bin.4 YulandiA_2020__SRS6115052__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum tempeh soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 days YulandiA_2020__SRS6115052__bin.21 98.36400818 0 104 1856426 37.95 43978 SRS6115052 SRR11036332 Indonesia PRJNA605305 SRP247539 NCBI Yulandi, A., Suwanto, A., Waturangi, D.E., and Wahyudi, A.T. (2020). Shotgun metagenomic analysis reveals new insights into bacterial community profiles in tempeh. BMC Res. Notes 13, 562. YulandiA_2020__SRS6115052__bin.21 YulandiA_2020__SRS6115052__bin.21 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella paramesenteroides tempeh soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 days YulandiA_2020__SRS6115052__bin.28 93.44746163 1.796536797 103 1309363 51.32 19245 SRS6115052 SRR11036332 Indonesia PRJNA605305 SRP247539 NCBI Yulandi, A., Suwanto, A., Waturangi, D.E., and Wahyudi, A.T. (2020). Shotgun metagenomic analysis reveals new insights into bacterial community profiles in tempeh. BMC Res. Notes 13, 562. GCF_006740305.1_ASM674030v1_genomic YulandiA_2020__SRS6115052__bin.28 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii tempeh soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 days YulandiA_2020__SRS6115052__bin.11 93.84816754 1.439790576 176 1578394 42.3 14509 SRS6115052 SRR11036332 Indonesia PRJNA605305 SRP247539 NCBI Yulandi, A., Suwanto, A., Waturangi, D.E., and Wahyudi, A.T. (2020). Shotgun metagenomic analysis reveals new insights into bacterial community profiles in tempeh. BMC Res. Notes 13, 562. YulandiA_2020__SRS6115052__bin.11 YulandiA_2020__SRS6115052__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus Ligilactobacillus agilis tempeh soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 days YulandiA_2020__SRS6115052__bin.12 64.15819511 0.801230605 156 898943 44.85 7122 SRS6115052 SRR11036332 Indonesia PRJNA605305 SRP247539 NCBI Yulandi, A., Suwanto, A., Waturangi, D.E., and Wahyudi, A.T. (2020). Shotgun metagenomic analysis reveals new insights into bacterial community profiles in tempeh. BMC Res. Notes 13, 562. LeechJ_xxxx__AF81__bin.1 YulandiA_2020__SRS6115052__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc sp900554745 tempeh soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 days YulandiA_2020__SRS6115052__bin.1 81.340151 3.349673203 1207 4609682 36.12 4384 SRS6115052 SRR11036332 Indonesia PRJNA605305 SRP247539 NCBI Yulandi, A., Suwanto, A., Waturangi, D.E., and Wahyudi, A.T. (2020). Shotgun metagenomic analysis reveals new insights into bacterial community profiles in tempeh. BMC Res. Notes 13, 562. YulandiA_2020__SRS6115052__bin.1 YulandiA_2020__SRS6115052__bin.1 Bacteroidota;Bacteroidia;Flavobacteriales;Weeksellaceae;Chryseobacterium Chryseobacterium gleum tempeh soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 days YulandiA_2020__SRS6115052__bin.2 98.7704918 1.014832162 68 3548559 68.11 83869 SRS6115052 SRR11036332 Indonesia PRJNA605305 SRP247539 NCBI Yulandi, A., Suwanto, A., Waturangi, D.E., and Wahyudi, A.T. (2020). Shotgun metagenomic analysis reveals new insights into bacterial community profiles in tempeh. BMC Res. Notes 13, 562. YulandiA_2020__SRS6115052__bin.2 YulandiA_2020__SRS6115052__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Geopseudomonas NA tempeh soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 days YulandiA_2020__SRS6115052__bin.6 97.79365079 1.666666667 300 4723160 43.33 31242 SRS6115052 SRR11036332 Indonesia PRJNA605305 SRP247539 NCBI Yulandi, A., Suwanto, A., Waturangi, D.E., and Wahyudi, A.T. (2020). Shotgun metagenomic analysis reveals new insights into bacterial community profiles in tempeh. BMC Res. Notes 13, 562. YulandiA_2020__SRS6115052__bin.6 YulandiA_2020__SRS6115052__bin.6 Bacteroidota;Bacteroidia;Sphingobacteriales;Sphingobacteriaceae;Sphingobacterium Sphingobacterium thalpophilum tempeh soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 days YulandiA_2020__SRS6115052__bin.7 90.98383213 4.086687307 552 4105430 66.44 10056 SRS6115052 SRR11036332 Indonesia PRJNA605305 SRP247539 NCBI Yulandi, A., Suwanto, A., Waturangi, D.E., and Wahyudi, A.T. (2020). Shotgun metagenomic analysis reveals new insights into bacterial community profiles in tempeh. BMC Res. Notes 13, 562. YulandiA_2020__SRS6115053__bin.3 YulandiA_2020__SRS6115052__bin.7 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Comamonas Comamonas terrae tempeh soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 days YulandiA_2020__SRS6115052__bin.8 89.07284768 1.214128035 230 1708610 36.64 10572 SRS6115052 SRR11036332 Indonesia PRJNA605305 SRP247539 NCBI Yulandi, A., Suwanto, A., Waturangi, D.E., and Wahyudi, A.T. (2020). Shotgun metagenomic analysis reveals new insights into bacterial community profiles in tempeh. BMC Res. Notes 13, 562. YulandiA_2020__SRS6115052__bin.8 YulandiA_2020__SRS6115052__bin.8 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_E Enterococcus E cecorum tempeh soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 days YulandiA_2020__SRS6115053__bin.13 90.21636823 2.272727273 573 2699898 34.36 6358 SRS6115053 SRR11036331 Indonesia PRJNA605305 SRP247539 NCBI Yulandi, A., Suwanto, A., Waturangi, D.E., and Wahyudi, A.T. (2020). Shotgun metagenomic analysis reveals new insights into bacterial community profiles in tempeh. BMC Res. Notes 13, 562. MAG_501 YulandiA_2020__SRS6115053__bin.13 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis tempeh soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 days YulandiA_2020__SRS6115053__bin.2 92.62295082 0.683060109 100 1586452 53.34 23354 SRS6115053 SRR11036331 Indonesia PRJNA605305 SRP247539 NCBI Yulandi, A., Suwanto, A., Waturangi, D.E., and Wahyudi, A.T. (2020). Shotgun metagenomic analysis reveals new insights into bacterial community profiles in tempeh. BMC Res. Notes 13, 562. FontanaF_2023__SRR20746839__bin.4 YulandiA_2020__SRS6115052__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum tempeh soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 days YulandiA_2020__SRS6115053__bin.10 97.73584906 0.377358491 114 2975088 40.94 52110 SRS6115053 SRR11036331 Indonesia PRJNA605305 SRP247539 NCBI Yulandi, A., Suwanto, A., Waturangi, D.E., and Wahyudi, A.T. (2020). Shotgun metagenomic analysis reveals new insights into bacterial community profiles in tempeh. BMC Res. Notes 13, 562. YulandiA_2020__SRS6115053__bin.10 YulandiA_2020__SRS6115053__bin.10 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_D Enterococcus D gallinarum tempeh soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 days YulandiA_2020__SRS6115053__bin.7 97.08588957 0.920245399 185 1761791 38 14933 SRS6115053 SRR11036331 Indonesia PRJNA605305 SRP247539 NCBI Yulandi, A., Suwanto, A., Waturangi, D.E., and Wahyudi, A.T. (2020). Shotgun metagenomic analysis reveals new insights into bacterial community profiles in tempeh. BMC Res. Notes 13, 562. YulandiA_2020__SRS6115052__bin.21 YulandiA_2020__SRS6115052__bin.21 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella paramesenteroides tempeh soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 days YulandiA_2020__SRS6115053__bin.3 87.46957694 2.784657723 888 3770674 66.77 5194 SRS6115053 SRR11036331 Indonesia PRJNA605305 SRP247539 NCBI Yulandi, A., Suwanto, A., Waturangi, D.E., and Wahyudi, A.T. (2020). Shotgun metagenomic analysis reveals new insights into bacterial community profiles in tempeh. BMC Res. Notes 13, 562. YulandiA_2020__SRS6115053__bin.3 YulandiA_2020__SRS6115053__bin.3 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Comamonas Comamonas terrae tempeh soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 days YulandiA_2020__SRS6115053__bin.17 97.07602339 2.192982456 161 2215978 64.22 22970 SRS6115053 SRR11036331 Indonesia PRJNA605305 SRP247539 NCBI Yulandi, A., Suwanto, A., Waturangi, D.E., and Wahyudi, A.T. (2020). Shotgun metagenomic analysis reveals new insights into bacterial community profiles in tempeh. BMC Res. Notes 13, 562. YulandiA_2020__SRS6115053__bin.17 YulandiA_2020__SRS6115053__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;NA NA tempeh soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 days YulandiA_2020__SRS6115053__bin.23 100 0.735294118 41 4857012 36.74 208358 SRS6115053 SRR11036331 Indonesia PRJNA605305 SRP247539 NCBI Yulandi, A., Suwanto, A., Waturangi, D.E., and Wahyudi, A.T. (2020). Shotgun metagenomic analysis reveals new insights into bacterial community profiles in tempeh. BMC Res. Notes 13, 562. YulandiA_2020__SRS6115053__bin.23 YulandiA_2020__SRS6115053__bin.23 Bacteroidota;Bacteroidia;Flavobacteriales;Weeksellaceae;Chryseobacterium NA tempeh soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 days YulandiA_2020__SRS6115053__bin.26 94.90294355 2.569924019 320 5596309 63.27 28695 SRS6115053 SRR11036331 Indonesia PRJNA605305 SRP247539 NCBI Yulandi, A., Suwanto, A., Waturangi, D.E., and Wahyudi, A.T. (2020). Shotgun metagenomic analysis reveals new insights into bacterial community profiles in tempeh. BMC Res. Notes 13, 562. YulandiA_2020__SRS6115053__bin.26 YulandiA_2020__SRS6115053__bin.26 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E sp024349685 tempeh soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 days YulandiA_2020__SRS6115053__bin.6 51.72413793 0 590 3069280 54.95 6045 SRS6115053 SRR11036331 Indonesia PRJNA605305 SRP247539 NCBI Yulandi, A., Suwanto, A., Waturangi, D.E., and Wahyudi, A.T. (2020). Shotgun metagenomic analysis reveals new insights into bacterial community profiles in tempeh. BMC Res. Notes 13, 562. YulandiA_2020__SRS6115053__bin.6 YulandiA_2020__SRS6115053__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Atlantibacter Atlantibacter hermannii tempeh soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 days XieM_2019__SAMC044639__bin.19 94.0625 0 104 2159753 46.28 35635 SAMC044639 CRR031822 China PRJCA000974 CRA001049 GSA Xie, M., Wu, J., An, F., Yue, X., Tao, D., Wu, R., and Lee, Y. (2019). An integrated metagenomic/metaproteomic investigation of microbiota in dajiang-meju, a traditional fermented soybean product in Northeast China. Food Res. Int. 115, 414–424. MotaGutierrezJ_2021__SRR11602150__bin.9 LandisEA_2021__SRS5653333__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis dajiang-meju soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 months XieM_2019__SAMC044639__bin.40 95.23809524 1.415973797 231 1921358 37.75 12741 SAMC044639 CRR031822 China PRJCA000974 CRA001049 GSA Xie, M., Wu, J., An, F., Yue, X., Tao, D., Wu, R., and Lee, Y. (2019). An integrated metagenomic/metaproteomic investigation of microbiota in dajiang-meju, a traditional fermented soybean product in Northeast China. Food Res. Int. 115, 414–424. GCF_009913915.1_ASM991391v1_genomic MortensenS_xxxx__WK054-2-L-08h-04E9_S16__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides dajiang-meju soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 months XieM_2019__SAMC044639__bin.15 89.14609053 2.049039781 428 2215748 45.29 6152 SAMC044639 CRR031822 China PRJCA000974 CRA001049 GSA Xie, M., Wu, J., An, F., Yue, X., Tao, D., Wu, R., and Lee, Y. (2019). An integrated metagenomic/metaproteomic investigation of microbiota in dajiang-meju, a traditional fermented soybean product in Northeast China. Food Res. Int. 115, 414–424. FalardeauJ_2023__SRR20811279__bin.3 MASTER_WP4_UNINA_1__SF013_71775__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum dajiang-meju soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 months XieM_2019__SAMC044639__bin.1 87.2863716 2.914110429 169 2179938 44.97 24430 SAMC044639 CRR031822 China PRJCA000974 CRA001049 GSA Xie, M., Wu, J., An, F., Yue, X., Tao, D., Wu, R., and Lee, Y. (2019). An integrated metagenomic/metaproteomic investigation of microbiota in dajiang-meju, a traditional fermented soybean product in Northeast China. Food Res. Int. 115, 414–424. LeechJ_2020__ERS3967691__bin.13 XieM_2019__SAMC044639__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella cibaria dajiang-meju soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 months XieM_2019__SAMC044639__bin.34 85.01796945 1.037735849 272 2037527 38.59 13092 SAMC044639 CRR031822 China PRJCA000974 CRA001049 GSA Xie, M., Wu, J., An, F., Yue, X., Tao, D., Wu, R., and Lee, Y. (2019). An integrated metagenomic/metaproteomic investigation of microbiota in dajiang-meju, a traditional fermented soybean product in Northeast China. Food Res. Int. 115, 414–424. ODFM-BA-A-0139-001_Enterococcus_lactis_CICC_24101 MAG_125 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B lactis dajiang-meju soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 months XieM_2019__SAMC044639__bin.30 97.47826378 2.959470305 110 2023501 39.02 40623 SAMC044639 CRR031822 China PRJCA000974 CRA001049 GSA Xie, M., Wu, J., An, F., Yue, X., Tao, D., Wu, R., and Lee, Y. (2019). An integrated metagenomic/metaproteomic investigation of microbiota in dajiang-meju, a traditional fermented soybean product in Northeast China. Food Res. Int. 115, 414–424. MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc citreum dajiang-meju soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 months XieM_2019__SAMC044639__bin.4 74.58563536 1.104972376 9 1521277 31.66 389273 SAMC044639 CRR031822 China PRJCA000974 CRA001049 GSA Xie, M., Wu, J., An, F., Yue, X., Tao, D., Wu, R., and Lee, Y. (2019). An integrated metagenomic/metaproteomic investigation of microbiota in dajiang-meju, a traditional fermented soybean product in Northeast China. Food Res. Int. 115, 414–424. KharnaiorP_2023__SRR22859379__bin.2 KharnaiorP_2023__SRR22859379__bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Mammaliicoccus Mammaliicoccus lentus dajiang-meju soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 months XieM_2019__SAMC044639__bin.32 97.32240437 1.879781421 45 4586097 55.4 171552 SAMC044639 CRR031822 China PRJCA000974 CRA001049 GSA Xie, M., Wu, J., An, F., Yue, X., Tao, D., Wu, R., and Lee, Y. (2019). An integrated metagenomic/metaproteomic investigation of microbiota in dajiang-meju, a traditional fermented soybean product in Northeast China. Food Res. Int. 115, 414–424. XieM_2019__SAMC044639__bin.32 XieM_2019__SAMC044639__bin.32 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Pantoea Pantoea agglomerans dajiang-meju soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 months XieM_2019__SAMC044639__bin.20 98.85124611 0 30 3570483 67.07 243268 SAMC044639 CRR031822 China PRJCA000974 CRA001049 GSA Xie, M., Wu, J., An, F., Yue, X., Tao, D., Wu, R., and Lee, Y. (2019). An integrated metagenomic/metaproteomic investigation of microbiota in dajiang-meju, a traditional fermented soybean product in Northeast China. Food Res. Int. 115, 414–424. XieM_2019__SAMC044639__bin.20 XieM_2019__SAMC044639__bin.20 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Aquabacterium Aquabacterium commune dajiang-meju soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 months XieM_2019__SAMC044639__bin.22 94.03224362 1.16353187 485 3835943 67.44 11258 SAMC044639 CRR031822 China PRJCA000974 CRA001049 GSA Xie, M., Wu, J., An, F., Yue, X., Tao, D., Wu, R., and Lee, Y. (2019). An integrated metagenomic/metaproteomic investigation of microbiota in dajiang-meju, a traditional fermented soybean product in Northeast China. Food Res. Int. 115, 414–424. XieM_2019__SAMC044639__bin.22 XieM_2019__SAMC044639__bin.22 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Xanthomonadaceae;Stenotrophomonas Stenotrophomonas maltophilia AA dajiang-meju soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 months XieM_2019__SAMC044639__bin.26 69.92186147 4.488095238 1271 4027630 66.06 3437 SAMC044639 CRR031822 China PRJCA000974 CRA001049 GSA Xie, M., Wu, J., An, F., Yue, X., Tao, D., Wu, R., and Lee, Y. (2019). An integrated metagenomic/metaproteomic investigation of microbiota in dajiang-meju, a traditional fermented soybean product in Northeast China. Food Res. Int. 115, 414–424. XieM_2019__SAMC044639__bin.26 XieM_2019__SAMC044639__bin.26 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Telluria Telluria timonae dajiang-meju soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 months XieM_2019__SAMC044639__bin.27 75.43859649 3.50877193 626 3652767 39.72 7837 SAMC044639 CRR031822 China PRJCA000974 CRA001049 GSA Xie, M., Wu, J., An, F., Yue, X., Tao, D., Wu, R., and Lee, Y. (2019). An integrated metagenomic/metaproteomic investigation of microbiota in dajiang-meju, a traditional fermented soybean product in Northeast China. Food Res. Int. 115, 414–424. XieM_2019__SAMC044639__bin.27 XieM_2019__SAMC044639__bin.27 Bacillota;Bacilli;Bacillales_D;Amphibacillaceae;Oceanobacillus Oceanobacillus indicireducens dajiang-meju soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 months XieM_2019__SAMC044639__bin.28 53.11529947 0.062358277 41 2117360 55.34 91204 SAMC044639 CRR031822 China PRJCA000974 CRA001049 GSA Xie, M., Wu, J., An, F., Yue, X., Tao, D., Wu, R., and Lee, Y. (2019). An integrated metagenomic/metaproteomic investigation of microbiota in dajiang-meju, a traditional fermented soybean product in Northeast China. Food Res. Int. 115, 414–424. CM_UNINA_FFOOD__FFOOD_289__bin.32 XieM_2019__SAMC044639__bin.28 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Lelliottia Lelliottia nimipressuralis dajiang-meju soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 months XieM_2019__SAMC044639__bin.31 75.15673981 1.724137931 50 4723105 52.17 163711 SAMC044639 CRR031822 China PRJCA000974 CRA001049 GSA Xie, M., Wu, J., An, F., Yue, X., Tao, D., Wu, R., and Lee, Y. (2019). An integrated metagenomic/metaproteomic investigation of microbiota in dajiang-meju, a traditional fermented soybean product in Northeast China. Food Res. Int. 115, 414–424. XieM_2019__SAMC044639__bin.31 XieM_2019__SAMC044639__bin.31 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Citrobacter Citrobacter braakii dajiang-meju soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 months XieM_2019__SAMC044639__bin.3 91.65644172 4.447852761 70 1441878 41.2 32033 SAMC044639 CRR031822 China PRJCA000974 CRA001049 GSA Xie, M., Wu, J., An, F., Yue, X., Tao, D., Wu, R., and Lee, Y. (2019). An integrated metagenomic/metaproteomic investigation of microbiota in dajiang-meju, a traditional fermented soybean product in Northeast China. Food Res. Int. 115, 414–424. MASTER_WP4_UNINA_2__V-25.1__bin.1 MASTER_WP4_UNINA_2__V-25.1__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella viridescens dajiang-meju soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 months XieM_2019__SAMC044639__bin.9 97.39577099 0.228528912 70 4419635 55.94 106449 SAMC044639 CRR031822 China PRJCA000974 CRA001049 GSA Xie, M., Wu, J., An, F., Yue, X., Tao, D., Wu, R., and Lee, Y. (2019). An integrated metagenomic/metaproteomic investigation of microbiota in dajiang-meju, a traditional fermented soybean product in Northeast China. Food Res. Int. 115, 414–424. XieM_2019__SAMC044639__bin.9 XieM_2019__SAMC044639__bin.9 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter Enterobacter quasihormaechei dajiang-meju soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 months XieM_2019__SAMC044639__bin.29 91.4 0.3 2071 29984996 48.8 20615 SAMC044639 CRR031822 China PRJCA000974 CRA001049 GSA Xie, M., Wu, J., An, F., Yue, X., Tao, D., Wu, R., and Lee, Y. (2019). An integrated metagenomic/metaproteomic investigation of microbiota in dajiang-meju, a traditional fermented soybean product in Northeast China. Food Res. Int. 115, 414–424. XieM_2019__SAMC044639__bin.29 XieM_2019__SAMC044639__bin.29 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium Penicillium polonicum dajiang-meju soybean Plant Legumes soybean soybean solids solid none lactic mesophilic 1-2 months GCF_012396505.1_ASM1239650v1_genomic 99.46 0.14 25 1962451 36.41 134641 GCF_012396505.1 GCF_012396505.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_012396505.1_ASM1239650v1_genomic GCF_012396505.1_ASM1239650v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Periweissella Periweissella fabalis chocolate spontaneous_cocoa_bean_fermentations Plant Cocoa_Coffee cocoa bean chocolate solid low acetic mesophilic 1-7 days EBC_035.5 72.62 3.99 379 2428226 52.62 7460 SAMN40633069 SRS20892301 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_035.5 EBC_035.5 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Tatumella NA cider apple stagiaire_sb_cider Plant Fruit apple beverage liquid medium lactic mesophilic 1-3 months GCF_000785105.2_ASM78510v2_genomic 99.38 0.62 1 2095860 39.78 2095860 GCF_000785105.2 GCF_000785105.2 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_000785105.2_ASM78510v2_genomic GCF_000785105.2_ASM78510v2_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus curieae tofu stinky stinky_tofu_brine Plant Legumes soybean soybean liquid liquid none lactic mesophilic 3-6 weeks GCF_004745505.1_ASM474550v1_genomic 99.38 0.62 67 2870222 51.8 120537 GCF_004745505.1 GCF_004745505.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_004745505.1_ASM474550v1_genomic GCF_004745505.1_ASM474550v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus suantsaiihabitans suan tsai suan_tsai_fermented_vegetables Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks GCF_004745525.1_ASM474552v1_genomic 99.48 0.52 68 2601643 36.87 78760 GCF_004745525.1 GCF_004745525.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_004745525.1_ASM474552v1_genomic GCF_004745525.1_ASM474552v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus suantsaicola suan tsai suan_tsai_fermented_vegetables Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks GCF_001436255.1_ASM143625v1_genomic 98.94 0.21 82 2853250 42.95 72132 GCF_001436255.1 GCF_001436255.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001436255.1_ASM143625v1_genomic GCF_001436255.1_ASM143625v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus rapi sunki sunki_a_japanese_traditional_pickle Plant Roots_Tubers turnip pickled vegetables solid none lactic mesophilic 1-4 weeks Vreta_bin.2 95.3 1.88 195 2804364 33.24 20149 SAMN33725228 SRR23816540 Denmark PRJNA943417 SRP426743 NCBI Kothe CI, Carøe C, Mazel F, Zilber D, Cruz-Morales P, Mohellibi N, Evans JD. Novel misos shape distinct microbial ecologies: opportunities for flavourful sustainable food innovation. Food Res Int. 2024 Aug;189:114490. doi: 10.1016/j.foodres.2024.114490. Vreta_bin.2 Vreta_bin.2 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus arlettae miso yellow pea swedish_vreta_pea_miso Plant Legumes yellow pea other bean paste semi-solid none lactic mesophilic 1-3 months ArikanM_2020__ERS1875938__bin.3 91.54228856 0 50 2303387 64.49 80796 ERS1875938 ERR2437613 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1939593__bin.5 ArikanM_2020__ERS1939593__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas entanii tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1875938__bin.4 99.5 0.3 155 10553964 42.38 143185 ERS1875938 ERR2437613 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1875938__bin.4 ArikanM_2020__ERS1875938__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygosaccharomyces Zygosaccharomyces bailii tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1881306__bin.5 95.1933879 2.114427861 87 2722496 64.12 53973 ERS1881306 ERR2102261 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1939580__bin.2 ArikanM_2020__ERS1939580__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter xylinus C tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1881306__bin.4 89.45273632 0 50 2006059 64.77 66893 ERS1881306 ERR2102261 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1939593__bin.5 ArikanM_2020__ERS1939593__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas entanii tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1881306__bin.1 99.2 0.3 167 10588254 42.35 155857 ERS1881306 ERR2102261 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1875938__bin.4 ArikanM_2020__ERS1875938__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygosaccharomyces Zygosaccharomyces bailii tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1932640__bin.3 88.5261194 0.746268657 97 2764145 64.29 42012 ERS1932640 ERR2126384 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. GCF_011611525.1_ASM1161152v1_genomic ArikanM_2020__ERS1939655__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter rhaeticus tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1932640__bin.2 79.72636816 0 52 1898616 64.7 63004 ERS1932640 ERR2126384 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1939593__bin.5 ArikanM_2020__ERS1939593__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas entanii tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1937824__bin.3 98.94479217 1.119402985 103 2772231 64.16 42798 ERS1937824 ERR2401479 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1939580__bin.2 ArikanM_2020__ERS1939580__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter xylinus C tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1937824__bin.1 95.21344888 0 102 2831343 64.35 53089 ERS1937824 ERR2401479 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. GCF_011611525.1_ASM1161152v1_genomic ArikanM_2020__ERS1939655__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter rhaeticus tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1937824__bin.4 93.03482587 0 56 2265800 64.5 66991 ERS1937824 ERR2401479 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1939593__bin.5 ArikanM_2020__ERS1939593__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas entanii tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1937824__bin.2 99.5 0.3 215 10567255 42.38 87459 ERS1937824 ERR2401479 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1875938__bin.4 ArikanM_2020__ERS1875938__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygosaccharomyces Zygosaccharomyces bailii tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1937969__bin.5 99.48643877 0.497512438 60 3041462 63.57 100794 ERS1937969 ERR2401480;ERR2133080 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1939593__bin.5 ArikanM_2020__ERS1939593__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas entanii tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1937969__bin.3 97.29176697 2.23880597 114 2680084 64.2 38085 ERS1937969 ERR2401480;ERR2133080 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1939580__bin.2 ArikanM_2020__ERS1939580__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter xylinus C tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1937969__bin.6 95.052961 2.155887231 94 2876641 64.46 55053 ERS1937969 ERR2401480;ERR2133080 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. GCF_011611525.1_ASM1161152v1_genomic ArikanM_2020__ERS1939655__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter rhaeticus tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1937969__bin.2 97.3 0.3 327 10405931 42.34 52162 ERS1937969 ERR2401480;ERR2133080 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1875938__bin.4 ArikanM_2020__ERS1875938__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygosaccharomyces Zygosaccharomyces bailii tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1939580__bin.2 99.53057294 0.124378109 71 2814879 63.91 61634 ERS1939580 ERR2401481 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1939580__bin.2 ArikanM_2020__ERS1939580__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter xylinus C tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1939580__bin.3 99.0330605 0 77 2771875 64.63 62613 ERS1939580 ERR2401481 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. GCF_011611525.1_ASM1161152v1_genomic ArikanM_2020__ERS1939655__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter rhaeticus tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1939580__bin.4 89.55223881 0 48 2303315 64.34 71924 ERS1939580 ERR2401481 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1939593__bin.5 ArikanM_2020__ERS1939593__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas entanii tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1939586__bin.3 98.00995025 1.508586102 64 2674064 64.07 73925 ERS1939586 ERR2135449 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1939593__bin.5 ArikanM_2020__ERS1939593__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas entanii tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1939593__bin.5 98.00995025 0 66 2476843 64.3 69609 ERS1939593 ERR2401482 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1939593__bin.5 ArikanM_2020__ERS1939593__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas entanii tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1939593__bin.4 94.55544856 0 102 2839428 64.37 45742 ERS1939593 ERR2401482 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. GCF_011611525.1_ASM1161152v1_genomic ArikanM_2020__ERS1939655__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter rhaeticus tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1939593__bin.3 99.1 0.3 153 9979161 42.59 113182 ERS1939593 ERR2401482 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1875938__bin.4 ArikanM_2020__ERS1875938__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygosaccharomyces Zygosaccharomyces bailii tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1939594__bin.6 97.01492537 0.497512438 78 3166124 63.32 69501 ERS1939594 ERR2135457 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1939593__bin.5 ArikanM_2020__ERS1939593__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas entanii tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1939594__bin.2 96.79425453 0 101 2911754 64.11 48866 ERS1939594 ERR2135457 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. GCF_011611525.1_ASM1161152v1_genomic ArikanM_2020__ERS1939655__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter rhaeticus tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1939594__bin.3 90.57534906 1.243781095 81 2208301 64.53 40561 ERS1939594 ERR2135457 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1939580__bin.2 ArikanM_2020__ERS1939580__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter xylinus C tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1939594__bin.1 66.2 0.3 2113 7798305 42.42 4127 ERS1939594 ERR2135457 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1875938__bin.4 ArikanM_2020__ERS1875938__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygosaccharomyces Zygosaccharomyces bailii tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1939655__bin.10 96.5337132 1.709401709 146 4464897 66.05 56488 ERS1939655 ERR2135518 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1939655__bin.10 ArikanM_2020__ERS1939655__bin.10 Acidobacteriota;Terriglobia;Bryobacterales;Bryobacteraceae;JANWVO01 JANWVO01 sp026002855 tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1939655__bin.12 64.58629078 0.917924894 489 1465581 60.26 3150 ERS1939655 ERR2135518 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. MAG_34 MAG_164 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Cutibacterium Cutibacterium acnes tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1939655__bin.2 95.37037037 0 152 2819893 60.63 29279 ERS1939655 ERR2135518 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. MAG_37 MAG_37 Armatimonadota;Fimbriimonadia;Fimbriimonadales;GBS-DC;LDYB01 LDYB01 sp001442985 tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1939655__bin.3 100 0.31152648 132 3357933 69.22 41638 ERS1939655 ERR2135518 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1939655__bin.3 ArikanM_2020__ERS1939655__bin.3 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Caldimonas Caldimonas aquatica tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1939655__bin.6 85.41781351 1.293103448 486 2635940 71.09 7316 ERS1939655 ERR2135518 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. MAG_52 MAG_52 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Xanthomonadaceae;Lysobacter_F Lysobacter F thermophilus tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1939655__bin.9 76.37390858 1.694915254 439 1632693 64.76 4380 ERS1939655 ERR2135518 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. MAG_308 MAG_308 Deinococcota;Deinococci;Deinococcales;Thermaceae;Thermus Thermus scotoductus tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1939655__bin.1 99.32193869 0 94 2955699 64.3 57430 ERS1939655 ERR2135518 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. GCF_011611525.1_ASM1161152v1_genomic ArikanM_2020__ERS1939655__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter rhaeticus tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1939655__bin.5 98.94880437 0.124378109 105 2874712 63.97 46963 ERS1939655 ERR2135518 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1939580__bin.2 ArikanM_2020__ERS1939580__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter xylinus C tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1939655__bin.4 95.52238806 0 52 2363306 64.43 105582 ERS1939655 ERR2135518 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1939593__bin.5 ArikanM_2020__ERS1939593__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas entanii tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1939655__bin.15 96.4 0.3 414 10227733 42.33 42742 ERS1939655 ERR2135518 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1875938__bin.4 ArikanM_2020__ERS1875938__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygosaccharomyces Zygosaccharomyces bailii tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1939656__bin.6 83.33631977 3.566978193 793 3119926 68.9 4789 ERS1939656 ERR2135519 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1939655__bin.3 ArikanM_2020__ERS1939655__bin.3 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Caldimonas Caldimonas aquatica tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1939656__bin.5 97.75818488 0.290215589 118 2855979 64.44 41432 ERS1939656 ERR2135519 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. GCF_011611525.1_ASM1161152v1_genomic ArikanM_2020__ERS1939655__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter rhaeticus tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1939656__bin.7 95.02487562 0 51 2364342 64.39 76104 ERS1939656 ERR2135519 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1939593__bin.5 ArikanM_2020__ERS1939593__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas entanii tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1939656__bin.3 91.0276331 0.290215589 64 2369457 64.24 59498 ERS1939656 ERR2135519 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1939580__bin.2 ArikanM_2020__ERS1939580__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter xylinus C tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1939656__bin.4 99.2 0.3 85 10016627 42.58 233903 ERS1939656 ERR2135519 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1875938__bin.4 ArikanM_2020__ERS1875938__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygosaccharomyces Zygosaccharomyces bailii tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1939657__bin.6 97.20751083 3.980099502 120 2871627 64.13 37008 ERS1939657 ERR2437614 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1939580__bin.2 ArikanM_2020__ERS1939580__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter xylinus C tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days ArikanM_2020__ERS1939657__bin.4 76.50758305 0 95 2336265 63.62 46792 ERS1939657 ERR2437614 Turkey PRJEB22200 ERP024546 NCBI Arıkan, M., Mitchell, A.L., Finn, R.D., and Gürel, F. (2020). Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics. J. Food Sci. 85, 455–464. ArikanM_2020__ERS1939593__bin.5 ArikanM_2020__ERS1939593__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas entanii tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LeechJ_2020__ERS3967717__bin.6 94.12826421 1.516897081 213 2059488 60.26 15331 ERS3967717 ERR4757832 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967706__bin.3 LeechJ_2020__ERS3967706__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium longum tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LeechJ_2020__ERS3967717__bin.5 94.39699793 2.241847826 135 1704617 47.22 22038 ERS3967717 ERR4757832 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967703__bin.6 LeechJ_2020__ERS3967703__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus mucosae tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LeechJ_2020__ERS3967717__bin.4 63.43567475 2.669448457 713 2209816 61.79 3337 ERS3967717 ERR4757832 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.2 LeechJ_2020__ERS3967717__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter saccharivorans tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LeechJ_2020__ERS3967723__bin.14 99.47643979 1.528458031 179 2657831 35.78 20643 ERS3967723 ERR4757838 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 LeechJ_2020__ERS3967723__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus sp030400225 tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LeechJ_2020__ERS3967723__bin.17 98.17846253 3.814262023 376 2834466 63.7 10914 ERS3967723 ERR4757838 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967723__bin.17 LeechJ_2020__ERS3967723__bin.17 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter xylinus tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LeechJ_2020__ERS3967723__bin.19 79.69577979 1.439790576 521 2126427 36.66 4758 ERS3967723 ERR4757838 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 LeechJ_2020__ERS3967724__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LeechJ_2020__ERS3967723__bin.4 77.15757114 3.818031057 529 2347330 59.94 5403 ERS3967723 ERR4757838 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.6 LeechJ_2020__ERS3967723__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter papayae tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LeechJ_2020__ERS3967723__bin.16 66.9393988 1.990049751 724 2268256 61.34 3322 ERS3967723 ERR4757838 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. G_275_3_oxydans_assembly LeechJ_2020__ERS3967724__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter potus tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LeechJ_2020__ERS3967723__bin.2 62.98850575 0 354 2560716 57.59 9376 ERS3967723 ERR4757838 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. SRR10454516C127_okinawensis_assembly LeechJ_2020__ERS3967723__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter okinawensis A tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LeechJ_2020__ERS3967723__bin.12 97.59358289 2.406417112 86 1804906 37.56 33278 ERS3967723 ERR4757838 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. GCF_020510245.1_ASM2051024v1_genomic MortensenS_xxxx__WK046-2-L-08h-03H9_S91__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus oeni tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LeechJ_2020__ERS3967723__bin.8 93.89339313 0 79 1932482 36.76 43839 ERS3967723 ERR4757838 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967723__bin.8 LeechJ_2020__ERS3967723__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus sp004010835 tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LeechJ_2020__ERS3967738__bin.3 53.70452291 1.892361111 403 1594207 46.29 4353 ERS3967738 ERR4757853 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MotaGutierrezJ_2021__SRR11602150__bin.9 LeechJ_2020__ERS3967738__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LeechJ_2020__ERS3967738__bin.1 98.554606 0.995024876 163 3019125 64.23 30607 ERS3967738 ERR4757853 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. GCF_011611525.1_ASM1161152v1_genomic ArikanM_2020__ERS1939655__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter rhaeticus tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LeechJ_2020__ERS3967738__bin.4 97.89125609 0 97 3135964 61.77 60435 ERS3967738 ERR4757853 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.2 LeechJ_2020__ERS3967738__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter saccharivorans tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LeechJ_2020__ERS3967738__bin.5 96.0199005 0 54 2569214 56.79 79918 ERS3967738 ERR4757853 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. G_361_1B_senegalensis_assembly LeechJ_2020__ERS3967738__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter senegalensis tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LeechJ_2020__ERS3967738__bin.2 91.41822048 1.741293532 296 3025574 62.7 14444 ERS3967738 ERR4757853 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. GCF_000817255.2_ASM81725v2_genomic GCF_000817255.2_ASM81725v2_genomic Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter intermedius tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920550__bin.25 94.33848635 2.641165756 338 2830598 47.67 13577 SRS2920550 SRR6685440;SRR6685439;SRR6685438;SRR6680341 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920551__bin.1 LiZ_2018__SRS2920551__bin.1 Bacillota;Bacilli;Bacillales_B;Bacillaceae_C;Weizmannia Weizmannia coagulans tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920550__bin.23 83.62068966 0.862068966 280 2473873 33.71 12453 SRS2920550 SRR6685440;SRR6685439;SRR6685438;SRR6680341 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. KumarJ_2019__SRS4562503__bin.5 LiZ_2018__SRS2920550__bin.23 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus gallinarum tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920550__bin.17 92.82945736 0.258397933 320 3202509 45.72 14436 SRS2920550 SRR6685440;SRR6685439;SRR6685438;SRR6680341 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920551__bin.24 LiZ_2018__SRS2920551__bin.24 Bacillota;Bacilli;Bacillales_K;Sporolactobacillaceae;NA NA tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920550__bin.18 84.89425277 4.688552189 445 2130024 71.61 5966 SRS2920550 SRR6685440;SRR6685439;SRR6685438;SRR6680341 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920551__bin.18 LiZ_2018__SRS2920550__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920550__bin.1 87.98667654 3.72193437 737 3227031 68.92 5393 SRS2920550 SRR6685440;SRR6685439;SRR6685438;SRR6680341 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920550__bin.1 LiZ_2018__SRS2920550__bin.1 Actinomycetota;Actinomycetes;Propionibacteriales;Nocardioidaceae;Aeromicrobium Aeromicrobium camelliae tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920550__bin.21 92.61075519 3.439587128 505 3488976 36.49 9565 SRS2920550 SRR6685440;SRR6685439;SRR6685438;SRR6680341 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920550__bin.21 LiZ_2018__SRS2920550__bin.21 Bacillota;Bacilli;Bacillales_B;Caldibacillaceae;Caldifermentibacillus NA tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920550__bin.29 91.95736434 3.740310078 623 3667638 66.12 8264 SRS2920550 SRR6685440;SRR6685439;SRR6685438;SRR6680341 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920551__bin.17 LiZ_2018__SRS2920551__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920550__bin.32 95.94843462 1.243093923 258 2365324 40.81 12950 SRS2920550 SRR6685440;SRR6685439;SRR6685438;SRR6680341 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920550__bin.32 LiZ_2018__SRS2920550__bin.32 Bacillota;Bacilli;Lactobacillales;Listeriaceae;Listeria NA tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920550__bin.4 97.6538162 0.362149533 284 4940944 68.57 28901 SRS2920550 SRR6685440;SRR6685439;SRR6685438;SRR6680341 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920551__bin.21 LiZ_2018__SRS2920551__bin.21 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Achromobacter Achromobacter sp001270295 tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920550__bin.7 83.85878992 3.888888889 495 2753343 70.94 7595 SRS2920550 SRR6685440;SRR6685439;SRR6685438;SRR6680341 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920550__bin.7 LiZ_2018__SRS2920550__bin.7 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920550__bin.8 89.20634921 0.476190476 386 2458191 41.82 7665 SRS2920550 SRR6685440;SRR6685439;SRR6685438;SRR6680341 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920551__bin.15 LiZ_2018__SRS2920551__bin.15 Bacteroidota;Bacteroidia;Sphingobacteriales;Sphingobacteriaceae;Sphingobacterium Sphingobacterium thermophilum tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920550__bin.9 96.12224037 2.238020011 332 3553203 64.91 15502 SRS2920550 SRR6685440;SRR6685439;SRR6685438;SRR6680341 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920550__bin.9 LiZ_2018__SRS2920550__bin.9 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Alcaligenes Alcaligenes sp023425645 tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920550__bin.30 98.12362031 0 155 2761419 64.74 24873 SRS2920550 SRR6685440;SRR6685439;SRR6685438;SRR6680341 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. GCF_004136575.1_ASM413657v1_genomic LiZ_2018__SRS2920551__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia koreensis tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920550__bin.28 72.4137931 0 179 6681094 60.79 61338 SRS2920550 SRR6685440;SRR6685439;SRR6685438;SRR6680341 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920554__bin.7 LiZ_2018__SRS2920554__bin.7 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E fluorescens AN tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920550__bin.22 97.72677596 0.846994536 55 4816916 58.3 115197 SRS2920550 SRR6685440;SRR6685439;SRR6685438;SRR6680341 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920550__bin.22 LiZ_2018__SRS2920550__bin.22 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Jejubacter NA tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920550__bin.14 68.2 0.3 4059 22190556 50.34 6395 SRS2920550 SRR6685440;SRR6685439;SRR6685438;SRR6680341 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920550__bin.14 LiZ_2018__SRS2920550__bin.14 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Aspergillus Aspergillus fumigatus tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920550__bin.12 90.3 1 3098 31803629 50.58 16334 SRS2920550 SRR6685440;SRR6685439;SRR6685438;SRR6680341 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920550__bin.12 LiZ_2018__SRS2920550__bin.12 Ascomycota;Eurotiomycetes;Eurotiales;Trichocomaceae;Rasamsonia Rasamsonia emersonii tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920550__bin.19 92.9 0.4 1633 23525078 45.15 20857 SRS2920550 SRR6685440;SRR6685439;SRR6685438;SRR6680341 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920550__bin.19 LiZ_2018__SRS2920550__bin.19 Mucoromycota;Mucoromycetes;Mucorales;Lichtheimiaceae;Rhizomucor Rhizomucor pusillus tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920550__bin.20 94.3 0.4 200 11815656 48.32 93717 SRS2920550 SRR6685440;SRR6685439;SRR6685438;SRR6680341 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920555__bin.25 LiZ_2018__SRS2920555__bin.25 Ascomycota;Saccharomycetes;Saccharomycetales;Trichomonascaceae;Blastobotrys Blastobotrys adeninivorans tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920551__bin.1 95.84037092 1.421415561 317 2816438 47.84 15311 SRS2920551 SRR6680342 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920551__bin.1 LiZ_2018__SRS2920551__bin.1 Bacillota;Bacilli;Bacillales_B;Bacillaceae_C;Weizmannia Weizmannia coagulans tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920551__bin.24 97.6744186 0.258397933 365 3228102 45.69 13246 SRS2920551 SRR6680342 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920551__bin.24 LiZ_2018__SRS2920551__bin.24 Bacillota;Bacilli;Bacillales_K;Sporolactobacillaceae;NA NA tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920551__bin.18 84.24523008 3.301412392 470 2232360 71.72 6044 SRS2920551 SRR6680342 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920551__bin.18 LiZ_2018__SRS2920551__bin.18 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920551__bin.17 88.99224806 0.406976744 570 3620911 66.1 9104 SRS2920551 SRR6680342 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920551__bin.17 LiZ_2018__SRS2920551__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920551__bin.3 96.40883978 2.163904236 284 2459978 40.73 12511 SRS2920551 SRR6680342 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920550__bin.32 LiZ_2018__SRS2920550__bin.32 Bacillota;Bacilli;Lactobacillales;Listeriaceae;Listeria NA tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920551__bin.21 98.85124611 0.2355919 280 4979188 68.55 29086 SRS2920551 SRR6680342 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920551__bin.21 LiZ_2018__SRS2920551__bin.21 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Achromobacter Achromobacter sp001270295 tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920551__bin.15 95.71428571 0.396825397 334 2649117 41.65 11667 SRS2920551 SRR6680342 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920551__bin.15 LiZ_2018__SRS2920551__bin.15 Bacteroidota;Bacteroidia;Sphingobacteriales;Sphingobacteriaceae;Sphingobacterium Sphingobacterium thermophilum tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920551__bin.11 96.07926109 2.386262562 432 3475571 64.94 11741 SRS2920551 SRR6680342 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920550__bin.9 LiZ_2018__SRS2920550__bin.9 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Alcaligenes Alcaligenes sp023425645 tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920551__bin.6 99.00662252 0 157 2726980 64.77 25448 SRS2920551 SRR6680342 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. GCF_004136575.1_ASM413657v1_genomic LiZ_2018__SRS2920551__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia koreensis tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920551__bin.23 97.70491803 0.846994536 47 4831624 58.31 123205 SRS2920551 SRR6680342 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920550__bin.22 LiZ_2018__SRS2920550__bin.22 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Jejubacter NA tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920551__bin.19 58.62068966 0.862068966 208 1666067 32.61 12683 SRS2920551 SRR6680342 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920551__bin.19 LiZ_2018__SRS2920551__bin.19 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Staphylococcus Staphylococcus kloosii tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920551__bin.22 85.58127572 1.851851852 626 2285398 47.33 3981 SRS2920551 SRR6680342 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. YasirM_2022__SRR18335011__bin.1 LiZ_2018__SRS2920551__bin.22 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus pentosus tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920551__bin.2 52.4 0.6 848 14408992 52.04 24155 SRS2920551 SRR6680342 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920550__bin.12 LiZ_2018__SRS2920550__bin.12 Ascomycota;Eurotiomycetes;Eurotiales;Trichocomaceae;Rasamsonia Rasamsonia emersonii tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920551__bin.4 92.8 0.4 1799 23689805 45.15 19665 SRS2920551 SRR6680342 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920550__bin.19 LiZ_2018__SRS2920550__bin.19 Mucoromycota;Mucoromycetes;Mucorales;Lichtheimiaceae;Rhizomucor Rhizomucor pusillus tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920551__bin.8 94.3 0.4 239 11809239 48.34 77049 SRS2920551 SRR6680342 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920555__bin.25 LiZ_2018__SRS2920555__bin.25 Ascomycota;Saccharomycetes;Saccharomycetales;Trichomonascaceae;Blastobotrys Blastobotrys adeninivorans tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920552__bin.7 93.95380435 0.543794973 181 6614282 60.75 58741 SRS2920552 SRR6680340 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920554__bin.7 LiZ_2018__SRS2920554__bin.7 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E fluorescens AN tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920552__bin.6 91.8 0.2 1956 32799578 50.32 33746 SRS2920552 SRR6680340 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920553__bin.2 LiZ_2018__SRS2920553__bin.2 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Aspergillus Aspergillus tubingensis tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920552__bin.3 91 0.3 656 11982708 48.3 32097 SRS2920552 SRR6680340 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920555__bin.25 LiZ_2018__SRS2920555__bin.25 Ascomycota;Saccharomycetes;Saccharomycetales;Trichomonascaceae;Blastobotrys Blastobotrys adeninivorans tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920553__bin.8 94.76902174 0.326403669 190 6659486 60.74 60121 SRS2920553 SRR6680339 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920554__bin.7 LiZ_2018__SRS2920554__bin.7 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E fluorescens AN tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920553__bin.2 93.1 0.3 1736 32865753 50.35 35585 SRS2920553 SRR6680339 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920553__bin.2 LiZ_2018__SRS2920553__bin.2 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Aspergillus Aspergillus tubingensis tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920553__bin.4 83.9 0.4 1403 11674465 48.28 11456 SRS2920553 SRR6680339 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920555__bin.25 LiZ_2018__SRS2920555__bin.25 Ascomycota;Saccharomycetes;Saccharomycetales;Trichomonascaceae;Blastobotrys Blastobotrys adeninivorans tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920554__bin.7 95.99184783 0.326403669 225 6726719 60.71 46338 SRS2920554 SRR6680338 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920554__bin.7 LiZ_2018__SRS2920554__bin.7 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E fluorescens AN tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920554__bin.6 92.5 0.2 1905 32896125 50.31 34771 SRS2920554 SRR6680338 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920553__bin.2 LiZ_2018__SRS2920553__bin.2 Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Aspergillus Aspergillus tubingensis tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920554__bin.3 89.9 0.6 1187 11949441 48.28 15245 SRS2920554 SRR6680338 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920555__bin.25 LiZ_2018__SRS2920555__bin.25 Ascomycota;Saccharomycetes;Saccharomycetales;Trichomonascaceae;Blastobotrys Blastobotrys adeninivorans tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920555__bin.13 97.09680658 3.97996357 445 2818811 47.78 9437 SRS2920555 SRR6680337 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920551__bin.1 LiZ_2018__SRS2920551__bin.1 Bacillota;Bacilli;Bacillales_B;Bacillaceae_C;Weizmannia Weizmannia coagulans tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920555__bin.19 93.15245478 0.645994832 496 3060793 45.83 8012 SRS2920555 SRR6680337 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920551__bin.24 LiZ_2018__SRS2920551__bin.24 Bacillota;Bacilli;Bacillales_K;Sporolactobacillaceae;NA NA tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920555__bin.21 77.48877666 2.615440115 490 2030218 71.66 4827 SRS2920555 SRR6680337 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920551__bin.18 LiZ_2018__SRS2920555__bin.21 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920555__bin.11 83.32364341 2.974806202 749 3588653 65.95 6079 SRS2920555 SRR6680337 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920551__bin.17 LiZ_2018__SRS2920551__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Brevibacteriaceae;Brevibacterium NA tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920555__bin.17 98.15837937 2.808471455 364 2370337 41.03 9178 SRS2920555 SRR6680337 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920550__bin.32 LiZ_2018__SRS2920550__bin.32 Bacillota;Bacilli;Lactobacillales;Listeriaceae;Listeria NA tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920555__bin.14 98.4423676 0.835280374 404 4918312 68.6 19612 SRS2920555 SRR6680337 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920551__bin.21 LiZ_2018__SRS2920551__bin.21 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Achromobacter Achromobacter sp001270295 tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920555__bin.3 66.13516114 3.342953343 466 2096988 70.98 5610 SRS2920555 SRR6680337 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920550__bin.7 LiZ_2018__SRS2920550__bin.7 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920555__bin.5 61.37931034 0 530 2258923 42.08 4927 SRS2920555 SRR6680337 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920551__bin.15 LiZ_2018__SRS2920551__bin.15 Bacteroidota;Bacteroidia;Sphingobacteriales;Sphingobacteriaceae;Sphingobacterium Sphingobacterium thermophilum tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920555__bin.4 89.7883561 2.28846673 602 3335435 64.99 7180 SRS2920555 SRR6680337 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920550__bin.9 LiZ_2018__SRS2920550__bin.9 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Alcaligenes Alcaligenes sp023425645 tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920555__bin.8 96.24724062 2.191737622 253 2773970 64.74 15855 SRS2920555 SRR6680337 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. GCF_004136575.1_ASM413657v1_genomic LiZ_2018__SRS2920551__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia koreensis tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920555__bin.2 98.36065574 0.975800156 95 4837837 58.35 88236 SRS2920555 SRR6680337 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920550__bin.22 LiZ_2018__SRS2920550__bin.22 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Jejubacter NA tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920555__bin.20 58.62068966 0 568 1729788 47.81 3160 SRS2920555 SRR6680337 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. YasirM_2022__SRR18335011__bin.1 LiZ_2018__SRS2920555__bin.20 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus pentosus tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920555__bin.18 76.8 0.5 1774 19697407 45.17 16212 SRS2920555 SRR6680337 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920550__bin.19 LiZ_2018__SRS2920550__bin.19 Mucoromycota;Mucoromycetes;Mucorales;Lichtheimiaceae;Rhizomucor Rhizomucor pusillus tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days LiZ_2018__SRS2920555__bin.25 94.6 0.4 263 11836170 48.34 72586 SRS2920555 SRR6680337 China PRJNA433075 SRP132363 NCBI Li, Z., Feng, C., Luo, X., Yao, H., Zhang, D., and Zhang, T. (2018). Revealing the influence of microbiota on the quality of Pu-erh tea during fermentation process by shotgun metagenomic and metabolomic analysis. Food Microbiol. 76, 405–415. LiZ_2018__SRS2920555__bin.25 LiZ_2018__SRS2920555__bin.25 Ascomycota;Saccharomycetes;Saccharomycetales;Trichomonascaceae;Blastobotrys Blastobotrys adeninivorans tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days OlgaP_2019__SRR11909515__bin.10 50.33 0.11 9 1218569 62.57 181092 SAMN15086654 SRR11909515 Mexico PRJNA636820 SRP265664 NCBI Lee I, Barh D, Podolich O, Brenig B, Tiwari S, Azevedo V, Góes-Neto A, Reva O, Kozyrovska N, de Vera JP, Kim BS. Metagenome-Assembled Genome Sequences Obtained from a Reactivated Kombucha Microbial Community Exposed to a Mars-Like Environment outside the International Space Station. Microbiol Resour Announc. 2021 Sep 9;10(36):e0054921. doi: 10.1128/MRA.00549-21. OlgaP_2019__SRR11909888__bin.7 OlgaP_2019__SRR11909888__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter oboediens tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days OlgaP_2019__SRR11909515__bin.14 88.06 0.27 59 2886117 61.91 96468 SAMN15086654 SRR11909515 Mexico PRJNA636820 SRP265664 NCBI Lee I, Barh D, Podolich O, Brenig B, Tiwari S, Azevedo V, Góes-Neto A, Reva O, Kozyrovska N, de Vera JP, Kim BS. Metagenome-Assembled Genome Sequences Obtained from a Reactivated Kombucha Microbial Community Exposed to a Mars-Like Environment outside the International Space Station. Microbiol Resour Announc. 2021 Sep 9;10(36):e0054921. doi: 10.1128/MRA.00549-21. MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.2 OlgaP_2019__SRR11909516__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter saccharivorans tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days OlgaP_2019__SRR11909515__bin.3 76.32 0.21 20 2168547 61.34 145338 SAMN15086654 SRR11909515 Mexico PRJNA636820 SRP265664 NCBI Lee I, Barh D, Podolich O, Brenig B, Tiwari S, Azevedo V, Góes-Neto A, Reva O, Kozyrovska N, de Vera JP, Kim BS. Metagenome-Assembled Genome Sequences Obtained from a Reactivated Kombucha Microbial Community Exposed to a Mars-Like Environment outside the International Space Station. Microbiol Resour Announc. 2021 Sep 9;10(36):e0054921. doi: 10.1128/MRA.00549-21. OlgaP_2019__SRR11910536__bin.9 OlgaP_2019__SRR11910536__bin.9 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas hansenii tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days OlgaP_2019__SRR11909516__bin.1 98.78 0.54 426 5781880 60.98 25186 SAMN15086653 SRR11909516 Mexico PRJNA636820 SRP265664 NCBI Lee I, Barh D, Podolich O, Brenig B, Tiwari S, Azevedo V, Góes-Neto A, Reva O, Kozyrovska N, de Vera JP, Kim BS. Metagenome-Assembled Genome Sequences Obtained from a Reactivated Kombucha Microbial Community Exposed to a Mars-Like Environment outside the International Space Station. Microbiol Resour Announc. 2021 Sep 9;10(36):e0054921. doi: 10.1128/MRA.00549-21. OlgaP_2019__SRR11909887__bin.1 OlgaP_2019__SRR11909887__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E shahriarae tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days OlgaP_2019__SRR11909516__bin.6 99.96 0.63 67 2898735 62.22 92616 SAMN15086653 SRR11909516 Mexico PRJNA636820 SRP265664 NCBI Lee I, Barh D, Podolich O, Brenig B, Tiwari S, Azevedo V, Góes-Neto A, Reva O, Kozyrovska N, de Vera JP, Kim BS. Metagenome-Assembled Genome Sequences Obtained from a Reactivated Kombucha Microbial Community Exposed to a Mars-Like Environment outside the International Space Station. Microbiol Resour Announc. 2021 Sep 9;10(36):e0054921. doi: 10.1128/MRA.00549-21. MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.2 OlgaP_2019__SRR11909516__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter saccharivorans tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days OlgaP_2019__SRR11909887__bin.1 99.88 0.32 362 5949082 60.9 27256 SAMN15087325 SRR11909887 Mexico PRJNA636837 SRP265673 NCBI Lee I, Barh D, Podolich O, Brenig B, Tiwari S, Azevedo V, Góes-Neto A, Reva O, Kozyrovska N, de Vera JP, Kim BS. Metagenome-Assembled Genome Sequences Obtained from a Reactivated Kombucha Microbial Community Exposed to a Mars-Like Environment outside the International Space Station. Microbiol Resour Announc. 2021 Sep 9;10(36):e0054921. doi: 10.1128/MRA.00549-21. OlgaP_2019__SRR11909887__bin.1 OlgaP_2019__SRR11909887__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E shahriarae tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days OlgaP_2019__SRR11909887__bin.3 73.38 0.27 65 1950083 61.44 51016 SAMN15087325 SRR11909887 Mexico PRJNA636837 SRP265673 NCBI Lee I, Barh D, Podolich O, Brenig B, Tiwari S, Azevedo V, Góes-Neto A, Reva O, Kozyrovska N, de Vera JP, Kim BS. Metagenome-Assembled Genome Sequences Obtained from a Reactivated Kombucha Microbial Community Exposed to a Mars-Like Environment outside the International Space Station. Microbiol Resour Announc. 2021 Sep 9;10(36):e0054921. doi: 10.1128/MRA.00549-21. OlgaP_2019__SRR11910536__bin.9 OlgaP_2019__SRR11910536__bin.9 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas hansenii tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days OlgaP_2019__SRR11909888__bin.1 52.21 0.32 16 1306300 63.26 102192 SAMN15087324 SRR11909888 Mexico PRJNA636837 SRP265673 NCBI Lee I, Barh D, Podolich O, Brenig B, Tiwari S, Azevedo V, Góes-Neto A, Reva O, Kozyrovska N, de Vera JP, Kim BS. Metagenome-Assembled Genome Sequences Obtained from a Reactivated Kombucha Microbial Community Exposed to a Mars-Like Environment outside the International Space Station. Microbiol Resour Announc. 2021 Sep 9;10(36):e0054921. doi: 10.1128/MRA.00549-21. MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.2 OlgaP_2019__SRR11909516__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter saccharivorans tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days OlgaP_2019__SRR11909888__bin.7 99.65 0.45 75 3181877 62.18 64470 SAMN15087324 SRR11909888 Mexico PRJNA636837 SRP265673 NCBI Lee I, Barh D, Podolich O, Brenig B, Tiwari S, Azevedo V, Góes-Neto A, Reva O, Kozyrovska N, de Vera JP, Kim BS. Metagenome-Assembled Genome Sequences Obtained from a Reactivated Kombucha Microbial Community Exposed to a Mars-Like Environment outside the International Space Station. Microbiol Resour Announc. 2021 Sep 9;10(36):e0054921. doi: 10.1128/MRA.00549-21. OlgaP_2019__SRR11909888__bin.7 OlgaP_2019__SRR11909888__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter oboediens tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days OlgaP_2019__SRR11910535__bin.14 77.24 0.15 83 2135875 61.31 38837 SAMN15088011 SRR11910535 Mexico PRJNA636891 SRP265684 NCBI Lee I, Barh D, Podolich O, Brenig B, Tiwari S, Azevedo V, Góes-Neto A, Reva O, Kozyrovska N, de Vera JP, Kim BS. Metagenome-Assembled Genome Sequences Obtained from a Reactivated Kombucha Microbial Community Exposed to a Mars-Like Environment outside the International Space Station. Microbiol Resour Announc. 2021 Sep 9;10(36):e0054921. doi: 10.1128/MRA.00549-21. OlgaP_2019__SRR11910536__bin.9 OlgaP_2019__SRR11910536__bin.9 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas hansenii tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days OlgaP_2019__SRR11910535__bin.18 64.99 0.06 34 2247928 61.59 108283 SAMN15088011 SRR11910535 Mexico PRJNA636891 SRP265684 NCBI Lee I, Barh D, Podolich O, Brenig B, Tiwari S, Azevedo V, Góes-Neto A, Reva O, Kozyrovska N, de Vera JP, Kim BS. Metagenome-Assembled Genome Sequences Obtained from a Reactivated Kombucha Microbial Community Exposed to a Mars-Like Environment outside the International Space Station. Microbiol Resour Announc. 2021 Sep 9;10(36):e0054921. doi: 10.1128/MRA.00549-21. OlgaP_2019__SRR11909888__bin.7 OlgaP_2019__SRR11909888__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter oboediens tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days OlgaP_2019__SRR11910535__bin.7 99.7 0.44 202 6106789 60.74 46474 SAMN15088011 SRR11910535 Mexico PRJNA636891 SRP265684 NCBI Lee I, Barh D, Podolich O, Brenig B, Tiwari S, Azevedo V, Góes-Neto A, Reva O, Kozyrovska N, de Vera JP, Kim BS. Metagenome-Assembled Genome Sequences Obtained from a Reactivated Kombucha Microbial Community Exposed to a Mars-Like Environment outside the International Space Station. Microbiol Resour Announc. 2021 Sep 9;10(36):e0054921. doi: 10.1128/MRA.00549-21. OlgaP_2019__SRR11909887__bin.1 OlgaP_2019__SRR11909887__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E shahriarae tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days OlgaP_2019__SRR11910536__bin.1 55.08 0.23 18 1554721 63.18 126352 SAMN15088010 SRR11910536 Mexico PRJNA636891 SRP265684 NCBI Lee I, Barh D, Podolich O, Brenig B, Tiwari S, Azevedo V, Góes-Neto A, Reva O, Kozyrovska N, de Vera JP, Kim BS. Metagenome-Assembled Genome Sequences Obtained from a Reactivated Kombucha Microbial Community Exposed to a Mars-Like Environment outside the International Space Station. Microbiol Resour Announc. 2021 Sep 9;10(36):e0054921. doi: 10.1128/MRA.00549-21. MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.2 OlgaP_2019__SRR11909516__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter saccharivorans tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days OlgaP_2019__SRR11910536__bin.2 59.96 0.16 33 2016230 61.76 110143 SAMN15088010 SRR11910536 Mexico PRJNA636891 SRP265684 NCBI Lee I, Barh D, Podolich O, Brenig B, Tiwari S, Azevedo V, Góes-Neto A, Reva O, Kozyrovska N, de Vera JP, Kim BS. Metagenome-Assembled Genome Sequences Obtained from a Reactivated Kombucha Microbial Community Exposed to a Mars-Like Environment outside the International Space Station. Microbiol Resour Announc. 2021 Sep 9;10(36):e0054921. doi: 10.1128/MRA.00549-21. OlgaP_2019__SRR11909888__bin.7 OlgaP_2019__SRR11909888__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter oboediens tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days OlgaP_2019__SRR11910536__bin.3 57.76 1.55 1075 3206985 61.4 3147 SAMN15088010 SRR11910536 Mexico PRJNA636891 SRP265684 NCBI Lee I, Barh D, Podolich O, Brenig B, Tiwari S, Azevedo V, Góes-Neto A, Reva O, Kozyrovska N, de Vera JP, Kim BS. Metagenome-Assembled Genome Sequences Obtained from a Reactivated Kombucha Microbial Community Exposed to a Mars-Like Environment outside the International Space Station. Microbiol Resour Announc. 2021 Sep 9;10(36):e0054921. doi: 10.1128/MRA.00549-21. OlgaP_2019__SRR11909887__bin.1 OlgaP_2019__SRR11909887__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E shahriarae tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days OlgaP_2019__SRR11910536__bin.9 100 0.17 27 2922606 60.47 138761 SAMN15088010 SRR11910536 Mexico PRJNA636891 SRP265684 NCBI Lee I, Barh D, Podolich O, Brenig B, Tiwari S, Azevedo V, Góes-Neto A, Reva O, Kozyrovska N, de Vera JP, Kim BS. Metagenome-Assembled Genome Sequences Obtained from a Reactivated Kombucha Microbial Community Exposed to a Mars-Like Environment outside the International Space Station. Microbiol Resour Announc. 2021 Sep 9;10(36):e0054921. doi: 10.1128/MRA.00549-21. OlgaP_2019__SRR11910536__bin.9 OlgaP_2019__SRR11910536__bin.9 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas hansenii tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days OlgaP_2019__SRR11916018__bin.4 78.91 0.67 72 2362438 61.13 48195 SAMN15091677 SRR11916018 Mexico PRJNA637016 SRP265781 NCBI Lee I, Barh D, Podolich O, Brenig B, Tiwari S, Azevedo V, Góes-Neto A, Reva O, Kozyrovska N, de Vera JP, Kim BS. Metagenome-Assembled Genome Sequences Obtained from a Reactivated Kombucha Microbial Community Exposed to a Mars-Like Environment outside the International Space Station. Microbiol Resour Announc. 2021 Sep 9;10(36):e0054921. doi: 10.1128/MRA.00549-21. OlgaP_2019__SRR11910536__bin.9 OlgaP_2019__SRR11910536__bin.9 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas hansenii tea fermented tea Plant Botanical tea leaves beverage solid low acetic mesophilic 1-14 days GCA_003325435.1_Razy_CA_genomic 94.35 51.74 5774 39022485 37.12 12571 GCA_003325435.1_Razy_CA_genomic GCA_003325435.1_Razy_CA_genomic NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCA_003325435.1_Razy_CA_genomic GCA_003325435.1_Razy_CA_genomic Mucoromycota;Mucoromycetes;Mucorales;Rhizopodaceae;Rhizopus Rhizopus oligosporus tempeh tempeh Plant Legumes soybean soybean solids solid low lactic mesophilic 1-2 days SEM_44_S61.1 99.34 0.93 85 4645013 55.49 87347 SAMN40633129 SRS20892367 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 SEM_44_S61.1 SEM_44_S61.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Pantoea NA tempeh tempeh_0_h Plant Legumes soybean soybean solids solid low lactic mesophilic 1-2 days LeechJ_2020__ERS3967696__bin.5 89.23545725 0 251 2095849 46.37 11219 ERS3967696 ERR4757811 Mexico PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MotaGutierrezJ_2021__SRR11602150__bin.9 LeechJ_2020__ERS3967696__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis tepache tepache Plant Fruit pineapple beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967696__bin.4 52.00086964 0.330687831 372 1090233 37.9 3003 ERS3967696 ERR4757811 Mexico PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. GCF_009913915.1_ASM991391v1_genomic LeechJ_2020__ERS3967696__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tepache tepache Plant Fruit pineapple beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967696__bin.2 59.25925926 0.617283951 141 2389684 44.85 26339 ERS3967696 ERR4757811 Mexico PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum tepache tepache Plant Fruit pineapple beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967696__bin.3 73.27586207 0 410 2048019 56.38 6393 ERS3967696 ERR4757811 Mexico PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK026-1-L-48h-02H9_S10__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tepache tepache Plant Fruit pineapple beverage liquid low lactic mesophilic 1-7 days GCF_014843995.1_ASM1484399v1_genomic 100 0.75 3 3549186 59.54 3530618 GCF_014843995.1 GCF_014843995.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 OlgaP_2019__SRR11910536__bin.9 OlgaP_2019__SRR11910536__bin.9 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas hansenii tibicos tibicos Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967702__bin.7 99.33774834 0.662251656 85 2283802 35.65 40006 ERS3967702 ERR4757817 China PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. AlvarezOrdonezA_xxxx__Q05-22__bin.4 LeechJ_2020__ERS3967702__bin.7 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Tetragenococcus Tetragenococcus halophilus tofu chili tofu_chili Plant Legumes soybean soybean solids semi-solid unknown unknown unknown unknown LeechJ_2020__ERS3967702__bin.6 80.83434034 1.130587204 406 1733305 37.93 5100 ERS3967702 ERR4757817 China PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. YulandiA_2020__SRS6115052__bin.21 LeechJ_2020__ERS3967702__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella paramesenteroides tofu chili tofu_chili Plant Legumes soybean soybean solids semi-solid unknown unknown unknown unknown LeechJ_2020__ERS3967702__bin.4 90.55194805 0.216450216 133 1544188 51.11 17068 ERS3967702 ERR4757817 China PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. GCF_006740305.1_ASM674030v1_genomic LeechJ_2020__ERS3967702__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii tofu chili tofu_chili Plant Legumes soybean soybean solids semi-solid unknown unknown unknown unknown LeechJ_2020__ERS3967702__bin.1 88.76404494 0 17 1424864 43.81 89453 ERS3967702 ERR4757817 China PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. CM_UNINA_FFOOD__FFOOD_245__bin.2 LeechJ_2020__ERS3967702__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis tofu chili tofu_chili Plant Legumes soybean soybean solids semi-solid unknown unknown unknown unknown LeechJ_2020__ERS3967702__bin.3 98.78587196 0.220750552 138 2801162 36.42 31883 ERS3967702 ERR4757817 China PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967702__bin.3 LeechJ_2020__ERS3967702__bin.3 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Kurthia Kurthia gibsonii tofu chili tofu_chili Plant Legumes soybean soybean solids semi-solid unknown unknown unknown unknown LeechJ_2020__ERS3967702__bin.2 92.96187683 4.838709677 497 2894728 28.51 7897 ERS3967702 ERR4757817 China PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967702__bin.2 LeechJ_2020__ERS3967702__bin.2 Bacteroidota;Bacteroidia;Flavobacteriales;Weeksellaceae;Chishuiella NA tofu chili tofu_chili Plant Legumes soybean soybean solids semi-solid unknown unknown unknown unknown LeechJ_2020__ERS3967737__bin.5 99.38271605 0 53 1895859 38.63 74070 ERS3967737 ERR4757852 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967740__bin.10 LeechJ_2020__ERS3967740__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus parvulus pickle tomato tomato_and_mustards Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967737__bin.2 81.42841182 2.136752137 807 3025566 64.78 4333 ERS3967737 ERR4757852 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967740__bin.7 LeechJ_2020__ERS3967740__bin.7 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Aquaspirillaceae;Microvirgula Microvirgula aerodenitrificans pickle tomato tomato_and_mustards Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967737__bin.1 66.20057156 3.389756944 573 1874718 48.21 3520 ERS3967737 ERR4757852 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967737__bin.1 LeechJ_2020__ERS3967737__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus NA pickle tomato tomato_and_mustards Plant Botanical mustard plant pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003124125.1_ASM312412v1_genomic 98.75 1.76 40 1966274 46.31 512363 GCF_003124125.1 GCF_003124125.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003124125.1_ASM312412v1_genomic GCF_003124125.1_ASM312412v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus bambusae pickle bamboo shoots traditional_fermented_bamboo_shoots Plant Vegetables_Aromatics bamboo shoots pickled vegetables solid none lactic mesophilic 1 day - 3 months GCF_003946305.1_ASM394630v1_genomic 99.48 1.31 36 2838071 47.21 179587 GCF_003946305.1 GCF_003946305.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_003946305.1_ASM394630v1_genomic GCF_003946305.1_ASM394630v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus porcinae nem chua traditional_vietnamese_nem_chua Animal Meat pork sausage solid none lactic mesophilic 1-3 days GCF_010306265.1_ASM1030626v1_genomic 98.77 0 20 1867525 36.57 280643 GCF_010306265.1 GCF_010306265.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_010306265.1_ASM1030626v1_genomic GCF_010306265.1_ASM1030626v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Weissella Weissella sagaensis yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours LeechJ_2020__ERS3967693__bin.5 78.65226337 3.534685479 235 1966510 45.04 11932 ERS3967693 ERR4757808 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. FalardeauJ_2023__SRR20811279__bin.3 LandisEA_2021__SRS5653094__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum turnip fermented turnip Plant Roots_Tubers turnip pickled vegetables solid none lactic mesophilic 1 day - 3 months LeechJ_2020__ERS3967693__bin.1 90.18575993 4.554073034 146 1533116 39.17 15828 ERS3967693 ERR4757808 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc citreum turnip fermented turnip Plant Roots_Tubers turnip pickled vegetables solid none lactic mesophilic 1 day - 3 months LeechJ_xxxx__AF11__bin.10 56.89655172 0 6 727370 45.73 461972 SAMN39472431 SRR27593239 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MotaGutierrezJ_2021__SRR11602150__bin.9 LeechJ_xxxx__AF54__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus brevis ugba ugba Plant Legumes oil bean seed other bean solid solid none lactic mesophilic 1-7 days LeechJ_xxxx__AF11__bin.5 93.93738977 3.759820426 375 3168076 46.77 11748 SAMN39472431 SRR27593239 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YasirM_2022__SRR18335011__bin.1 LeechJ_xxxx__AF11__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus pentosus ugba ugba Plant Legumes oil bean seed other bean solid solid none lactic mesophilic 1-7 days LeechJ_xxxx__AF11__bin.12 50.61167051 0.690161527 457 1116723 64.2 2466 SAMN39472431 SRR27593239 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF59__bin.3 LeechJ_xxxx__AF11__bin.12 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium phoceense A ugba ugba Plant Legumes oil bean seed other bean solid solid none lactic mesophilic 1-7 days LeechJ_xxxx__AF11__bin.2 94.03796654 1.614114114 437 2900330 67.34 9338 SAMN39472431 SRR27593239 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF11__bin.2 LeechJ_xxxx__AF11__bin.2 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium provencense ugba ugba Plant Legumes oil bean seed other bean solid solid none lactic mesophilic 1-7 days LeechJ_xxxx__AF11__bin.3 84.1 0.1 2318 11197133 38.83 6124 SAMN39472431 SRR27593239 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2574__bin.24 MASTER_WP4_CSIC_2__P2574__bin.24 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Candida Candida parapsilosis ugba ugba Plant Legumes oil bean seed other bean solid solid none lactic mesophilic 1-7 days LeechJ_xxxx__AF11__bin.9 96.5 0.2 1016 11535201 36.34 18396 SAMN39472431 SRR27593239 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__GO005_71775__bin.6 SternesPR_2017__Control1_A_shotgun__bin.2 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 ugba ugba Plant Legumes oil bean seed other bean solid solid none lactic mesophilic 1-7 days LeechJ_xxxx__AF43__bin.4 83.91121457 3.333333333 571 2205379 38.94 4444 SAMN39472462 SRR27593205 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0139-001_Enterococcus_lactis_CICC_24101 LeechJ_xxxx__AF43__bin.4 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B lactis ugba ugba Plant Legumes oil bean seed other bean solid solid none lactic mesophilic 1-7 days LeechJ_xxxx__AF43__bin.10 91.05960265 2.527593819 188 2514460 43.61 23743 SAMN39472462 SRR27593205 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF43__bin.10 LeechJ_xxxx__AF43__bin.10 Bacillota;Bacilli;Bacillales_D;Amphibacillaceae;Oceanobacillus Oceanobacillus sp938004015 ugba ugba Plant Legumes oil bean seed other bean solid solid none lactic mesophilic 1-7 days LeechJ_xxxx__AF43__bin.11 89.29359823 1.600441501 305 2168780 37.55 9572 SAMN39472462 SRR27593205 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF43__bin.11 LeechJ_xxxx__AF43__bin.11 Bacillota;Bacilli;Bacillales_D;Amphibacillaceae;Pseudogracilibacillus Pseudogracilibacillus sp937960785 ugba ugba Plant Legumes oil bean seed other bean solid solid none lactic mesophilic 1-7 days LeechJ_xxxx__AF43__bin.12 94.61835334 1.886792453 100 1290741 36.6 25834 SAMN39472462 SRR27593205 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF43__bin.12 LeechJ_xxxx__AF43__bin.12 Bacillota;Bacilli;Erysipelotrichales;Erysipelotrichaceae;Erysipelothrix NA ugba ugba Plant Legumes oil bean seed other bean solid solid none lactic mesophilic 1-7 days LeechJ_xxxx__AF43__bin.3 92.78145695 3.642384106 383 2413132 36.75 9023 SAMN39472462 SRR27593205 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF43__bin.3 LeechJ_xxxx__AF43__bin.3 Bacillota;Bacilli;Bacillales_D;Amphibacillaceae;Pseudogracilibacillus NA ugba ugba Plant Legumes oil bean seed other bean solid solid none lactic mesophilic 1-7 days LeechJ_xxxx__AF43__bin.5 93.92935982 2.70419426 185 2106800 45.22 18518 SAMN39472462 SRR27593205 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF43__bin.5 LeechJ_xxxx__AF43__bin.5 Bacillota;Bacilli;Bacillales_D;Amphibacillaceae;Pseudogracilibacillus Pseudogracilibacillus sp012518125 ugba ugba Plant Legumes oil bean seed other bean solid solid none lactic mesophilic 1-7 days LeechJ_xxxx__AF43__bin.8 79.79139362 3.81170817 530 2405052 56.82 5449 SAMN39472462 SRR27593205 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF43__bin.8 LeechJ_xxxx__AF43__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Yaniella Yaniella sp029267455 ugba ugba Plant Legumes oil bean seed other bean solid solid none lactic mesophilic 1-7 days LeechJ_xxxx__AF59__bin.13 82.58238414 3.390508862 314 2370468 41.6 10500 SAMN39472478 SRR27593188 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YulandiA_2020__SRS6115053__bin.10 YulandiA_2020__SRS6115053__bin.10 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_D Enterococcus D gallinarum ugba ugba Plant Legumes oil bean seed other bean solid solid none lactic mesophilic 1-7 days LeechJ_xxxx__AF59__bin.12 94.60264901 2.947019868 512 2272259 37.07 5381 SAMN39472478 SRR27593188 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967702__bin.3 LeechJ_xxxx__AF59__bin.12 Bacillota;Bacilli;Bacillales_A;Planococcaceae;Kurthia Kurthia gibsonii ugba ugba Plant Legumes oil bean seed other bean solid solid none lactic mesophilic 1-7 days LeechJ_xxxx__AF59__bin.2 97.23756906 1.38121547 394 2476289 32.66 7996 SAMN39472478 SRR27593188 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. KharnaiorP_2023__SRR22859377__bin.9 LeechJ_xxxx__AF59__bin.2 Bacillota;Bacilli;Lactobacillales;Vagococcaceae;Vagococcus Vagococcus fluvialis ugba ugba Plant Legumes oil bean seed other bean solid solid none lactic mesophilic 1-7 days LeechJ_xxxx__AF59__bin.15 87.26172273 1.032110092 603 2696058 71.49 5401 SAMN39472478 SRR27593188 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF59__bin.15 LeechJ_xxxx__AF59__bin.15 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Galactobacter NA ugba ugba Plant Legumes oil bean seed other bean solid solid none lactic mesophilic 1-7 days LeechJ_xxxx__AF59__bin.16 97.36784622 0.611620795 259 3202484 65.81 16951 SAMN39472478 SRR27593188 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF59__bin.16 LeechJ_xxxx__AF59__bin.16 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Glutamicibacter Glutamicibacter creatinolyticus ugba ugba Plant Legumes oil bean seed other bean solid solid none lactic mesophilic 1-7 days LeechJ_xxxx__AF59__bin.1 73.80952381 1.304347826 716 2789063 51.84 4535 SAMN39472478 SRR27593188 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF59__bin.1 LeechJ_xxxx__AF59__bin.1 Pseudomonadota;Alphaproteobacteria;Rhizobiales;Rhizobiaceae;Pseudochrobactrum Pseudochrobactrum saccharolyticum ugba ugba Plant Legumes oil bean seed other bean solid solid none lactic mesophilic 1-7 days LeechJ_xxxx__AF59__bin.3 91.61771904 3.651492903 434 2483795 64.2 7695 SAMN39472478 SRR27593188 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF59__bin.3 LeechJ_xxxx__AF59__bin.3 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium phoceense A ugba ugba Plant Legumes oil bean seed other bean solid solid none lactic mesophilic 1-7 days LeechJ_xxxx__AF59__bin.5 92.39766082 1.169590643 594 3197967 70.65 6827 SAMN39472478 SRR27593188 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF59__bin.5 LeechJ_xxxx__AF59__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Leucobacter Leucobacter sp040392405 ugba ugba Plant Legumes oil bean seed other bean solid solid none lactic mesophilic 1-7 days LeechJ_xxxx__AF59__bin.6 96.95652174 0 100 3188613 49.36 51576 SAMN39472478 SRR27593188 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF59__bin.6 LeechJ_xxxx__AF59__bin.6 Pseudomonadota;Alphaproteobacteria;Rhizobiales;Rhizobiaceae;Paenochrobactrum Paenochrobactrum gallinarii ugba ugba Plant Legumes oil bean seed other bean solid solid none lactic mesophilic 1-7 days LeechJ_xxxx__AF59__bin.8 84.26030491 3.927536232 707 3192874 56.6 5423 SAMN39472478 SRR27593188 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF59__bin.8 LeechJ_xxxx__AF59__bin.8 Pseudomonadota;Alphaproteobacteria;Rhizobiales;Rhizobiaceae;Brucella Brucella shanghaiense ugba ugba Plant Legumes oil bean seed other bean solid solid none lactic mesophilic 1-7 days LeechJ_xxxx__AF73__bin.1 93.9594896 1.329958897 241 4184865 56.96 25672 SAMN39472492 SRR27593168 Kenya PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF73__bin.1 LeechJ_xxxx__AF73__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Pseudescherichia NA ugi ugi Plant Grain sorghum starch-based staple semi-solid low lactic mesophilic 1-3 days LeechJ_xxxx__AF73__bin.2 96.33336326 1.470508658 112 4312119 55.82 57354 SAMN39472492 SRR27593168 Kenya PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF73__bin.2 LeechJ_xxxx__AF73__bin.2 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Enterobacter_D Enterobacter D kobei A ugi ugi Plant Grain sorghum starch-based staple semi-solid low lactic mesophilic 1-3 days LeechJ_xxxx__AF74__bin.2 98.32735962 0.281618024 185 1823743 39.17 18538 SAMN39472493 SRR27593167 Kenya PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense ugi ugi Plant Grain sorghum starch-based staple semi-solid low lactic mesophilic 1-3 days LeechJ_xxxx__AF74__bin.4 99.88052569 0 26 1970368 37.33 139710 SAMN39472493 SRR27593167 Kenya PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK031-1-L-48h-03B2_S30__bin.1 MortensenS_xxxx__WK031-1-L-48h-03B2_S30__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc suionicum ugi ugi Plant Grain sorghum starch-based staple semi-solid low lactic mesophilic 1-3 days LeechJ_xxxx__AF74__bin.1 71.72619048 0.76943972 25 3313642 56.38 244748 SAMN39472493 SRR27593167 Kenya PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF74__bin.1 LeechJ_xxxx__AF74__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Kosakonia NA ugi ugi Plant Grain sorghum starch-based staple semi-solid low lactic mesophilic 1-3 days LeechJ_xxxx__AF76__bin.15 94.32067271 3.449616273 150 4204274 58.58 59551 SAMN39472495 SRR27593165 Kenya PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF76__bin.15 LeechJ_xxxx__AF76__bin.15 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Cronobacter Cronobacter dublinensis ugi ugi Plant Grain sorghum starch-based staple semi-solid low lactic mesophilic 1-3 days SEM_47_S64.31 62.41 2.49 24 2733719 55.42 189658 SAMN40633132 SRS20892371 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 We6_bin.full.92 SEM_47_S64.31 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Serratia Serratia proteamaculans viili viili_48_h Animal Dairy milk yogurt semi-solid none lactic mesophilic 12-24 hours SEM_47_S64.44 62.7 0 121 3728356 49.84 42050 SAMN40633132 SRS20892371 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 SEM_47_S64.44 SEM_47_S64.44 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Buttiauxella Buttiauxella noackiae viili viili_48_h Animal Dairy milk yogurt semi-solid none lactic mesophilic 12-24 hours GCF_004014775.2_ASM401477v2_genomic 100 0 4 3153180 53.11 2744393 GCF_004014775.2 GCF_004014775.2 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_004014775.2_ASM401477v2_genomic GCF_004014775.2_ASM401477v2_genomic Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter oryzoeni vinegar vinegar Plant Fruit grape vinegar liquid low acetic mesophilic 3-4 weeks EBC_105.6 99.78 0 35 1762999 38.98 68116 SAMN40633099 SRS20892334 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc citreum kimchi volcano_kimchi_smokeshow Plant Vegetables_Aromatics cabbage pickled vegetables solid low lactic mesophilic 1 day - 3 months LeechJ_xxxx__AF27__bin.6 87.34005684 2.23305261 240 1674363 38.89 10489 SAMN39472446 SRR27593223 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 LeechJ_xxxx__AF27__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese wagashi wagashi Animal Dairy milk cheese solid low lactic 70C 1-7 days LeechJ_xxxx__AF27__bin.2 56.43166727 0.822791927 310 965697 51.27 3310 SAMN39472446 SRR27593223 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic LeechJ_xxxx__AF27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese wagashi wagashi Animal Dairy milk cheese solid low lactic 70C 1-7 days LeechJ_xxxx__AF27__bin.1 96.13259669 1.952117864 125 1948598 37.11 24792 SAMN39472446 SRR27593223 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308520__bin.4 YouL_2022__SRR13308524__bin.34 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum cheese wagashi wagashi Animal Dairy milk cheese solid low lactic 70C 1-7 days LeechJ_xxxx__AF27__bin.4 50.34482759 1.724137931 833 2200352 55.06 2711 SAMN39472446 SRR27593223 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF27__bin.4 LeechJ_xxxx__AF27__bin.4 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Mixta NA cheese wagashi wagashi Animal Dairy milk cheese solid low lactic 70C 1-7 days LeechJ_xxxx__AF27__bin.5 61.28164465 0.44837907 808 2220358 62.34 2796 SAMN39472446 SRR27593223 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF27__bin.5 LeechJ_xxxx__AF27__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E parafulva B cheese wagashi wagashi Animal Dairy milk cheese solid low lactic 70C 1-7 days LeechJ_xxxx__AF14__bin.7 94.37843859 4.746376812 557 2867837 46.42 6593 SAMN39472433 SRR27593237 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 LeechJ_xxxx__AF14__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei cheese wara wara Animal Dairy milk cheese semi-solid low lactic 70C 1-7 days LeechJ_xxxx__AF14__bin.5 93.31674959 0.995024876 300 2284977 57.64 10700 SAMN39472433 SRR27593237 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. SRR10454486C2703_ghanensis_assembly LeechJ_xxxx__AF14__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter ghanensis cheese wara wara Animal Dairy milk cheese semi-solid low lactic 70C 1-7 days LeechJ_xxxx__AF14__bin.3 97.94007491 0.374531835 216 1828042 38.08 14705 SAMN39472433 SRR27593237 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 WalshAM_2017__ERS1739834__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius cheese wara wara Animal Dairy milk cheese semi-solid low lactic 70C 1-7 days LeechJ_xxxx__AF14__bin.9 96.31050767 0.059031877 122 1645721 50.58 23947 SAMN39472433 SRR27593237 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic LeechJ_xxxx__AF14__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese wara wara Animal Dairy milk cheese semi-solid low lactic 70C 1-7 days LeechJ_xxxx__AF14__bin.10 51.2 0 1169 6912856 51.42 7654 SAMN39472433 SRR27593237 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2614__bin.19 LeechJ_xxxx__AF14__bin.10 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;unknown unknown cheese wara wara Animal Dairy milk cheese semi-solid low lactic 70C 1-7 days LeechJ_xxxx__AF14__bin.4 97.7 0.1 967 13925739 38.8 23226 SAMN39472433 SRR27593237 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCA_003243815.1_ASM324381v1_genomic GCA_003243815.1_ASM324381v1_genomic Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Spathaspora Candida sake cheese wara wara Animal Dairy milk cheese semi-solid low lactic 70C 1-7 days LeechJ_xxxx__AF14__bin.6 79.5 0.5 2074 9502102 39.56 5315 SAMN39472433 SRR27593237 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. EBC_024.4 LeechJ_xxxx__AF14__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces marxianus cheese wara wara Animal Dairy milk cheese semi-solid low lactic 70C 1-7 days LeechJ_xxxx__AF42__bin.2 88.95768351 1.30449851 267 1388950 39.2 6485 SAMN39472461 SRR27593206 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 LeechJ_xxxx__AF42__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese wara wara Animal Dairy milk cheese semi-solid low lactic 70C 1-7 days LeechJ_xxxx__AF42__bin.3 93.59772059 0.983146067 214 1515548 38.02 9114 SAMN39472461 SRR27593206 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 WalshAM_2017__ERS1739834__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius cheese wara wara Animal Dairy milk cheese semi-solid low lactic 70C 1-7 days LeechJ_xxxx__AF42__bin.1 84.30735931 0.649350649 87 1371132 50.75 24084 SAMN39472461 SRR27593206 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic LeechJ_xxxx__AF42__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese wara wara Animal Dairy milk cheese semi-solid low lactic 70C 1-7 days LeechJ_xxxx__AF65__bin.2 92.02607342 1.118995633 171 1725881 39.05 14915 SAMN39472484 SRR27593177 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 LeechJ_2020__ERS3967688__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus cheese wara wara Animal Dairy milk cheese semi-solid low lactic 70C 1-7 days LeechJ_xxxx__AF65__bin.5 62.07792208 0.162337662 62 809352 51.45 20373 SAMN39472484 SRR27593177 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic LeechJ_xxxx__AF14__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii cheese wara wara Animal Dairy milk cheese semi-solid low lactic 70C 1-7 days LeechJ_xxxx__AF65__bin.6 91.70117265 0.936329588 76 1681842 37.45 49486 SAMN39472484 SRR27593177 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 WalshAM_2017__ERS1739834__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius cheese wara wara Animal Dairy milk cheese semi-solid low lactic 70C 1-7 days LeechJ_xxxx__AF65__bin.7 84.95297806 0 189 1829260 37.39 14590 SAMN39472484 SRR27593177 Nigeria PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. DeFilippisF_xxxx__DF_104__bin.4 DeFilippisF_xxxx__DF_104__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus macedonicus cheese wara wara Animal Dairy milk cheese semi-solid low lactic 70C 1-7 days GCF_002005485.1_ASM200548v1_genomic 98.51 1 2 3369297 59.48 3107922 GCF_002005485.1 GCF_002005485.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.5 GCF_002005485.1_ASM200548v1_genomic Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter albidus tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967701__bin.5 100 0 36 3055951 60.94 166583 ERS3967701 ERR4757816 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967701__bin.5 LeechJ_2020__ERS3967701__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter oxydans tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967701__bin.6 97.90575916 0.261780105 107 2449815 35.99 36268 ERS3967701 ERR4757816 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 LeechJ_2020__ERS3967701__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus sp030400225 tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967701__bin.3 97.86096257 0.178253119 16 1738397 40.06 276835 ERS3967701 ERR4757816 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. GCF_004102045.2_ASM410204v2_genomic LeechJ_2020__ERS3967701__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus sicerae tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967701__bin.4 98.51325145 0.90497737599999994 166 1960367 46.11 19198 ERS3967701 ERR4757816 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967701__bin.1 99.31966016 0.502712308 47 4810251 53.83 196075 ERS3967701 ERR4757816 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967701__bin.1 LeechJ_2020__ERS3967701__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Kluyvera Kluyvera cryocrescens tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967701__bin.2 88.7 0.1 1471 12023364 39.72 11740 ERS3967701 ERR4757816 United Kingdom PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. ODFM-BA-A-0118-001_Brettanomyces_anomalus_YV396 ODFM-BA-A-0118-001_Brettanomyces_anomalus_YV396 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Brettanomyces Brettanomyces anomalus tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967708__bin.1 65.51724138 0 299 1698301 35.15 6905 ERS3967708 ERR4757823 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MAG_501 WalshL_xxxx__B1__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967708__bin.2 91.66666667 1.058201058 149 1347931 38.22 12161 ERS3967708 ERR4757823 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967708__bin.3 95.62842362 2.012578616 213 2173457 35.45 14822 ERS3967708 ERR4757823 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967714__bin.8 94.9325039 3.85480953 726 4517079 64.99 8373 ERS3967714 ERR4757829 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK045-2-L-48h-03H6_S88__bin.5 LeechJ_2020__ERS3967714__bin.8 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconacetobacter Gluconacetobacter dulcium tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967714__bin.5 91.58374793 3.233830846 506 3719501 68.98 10579 ERS3967714 ERR4757829 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967716__bin.4 LeechJ_2020__ERS3967716__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Rhodovastum Rhodovastum sp937874445 tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967714__bin.6 92.7 2.4 784 10989716 40.02 23455 ERS3967714 ERR4757829 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967714__bin.6 LeechJ_2020__ERS3967714__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces uvarum tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967715__bin.7 97.59158752 1.741293532 260 3826255 69.27 22036 ERS3967715 ERR4757830 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967716__bin.4 LeechJ_2020__ERS3967716__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Rhodovastum Rhodovastum sp937874445 tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967715__bin.4 92.81223404 2.051326943 716 4154448 65.71 8189 ERS3967715 ERR4757830 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK045-2-L-48h-03H6_S88__bin.5 LeechJ_2020__ERS3967715__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconacetobacter Gluconacetobacter dulcium tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967715__bin.12 83.89261745 0 22 1600130 58.93 91869 ERS3967715 ERR4757830 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967715__bin.12 LeechJ_2020__ERS3967715__bin.12 Bacillota;Clostridia;Oscillospirales;Ethanoligenentaceae;Ethanoligenens NA tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967715__bin.5 96.50739477 1.990898749 163 4295224 64.59 40786 ERS3967715 ERR4757830 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967715__bin.5 LeechJ_2020__ERS3967715__bin.5 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Novosphingobium NA tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967715__bin.10 94.56285714 0.5 107 3034986 51.33 89336 ERS3967715 ERR4757830 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967715__bin.10 LeechJ_2020__ERS3967715__bin.10 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Herminiimonas NA tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967715__bin.1 96.49122807 0.109649123 142 2637948 66.95 28865 ERS3967715 ERR4757830 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967715__bin.1 LeechJ_2020__ERS3967715__bin.1 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium cyclohexanicum tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967715__bin.3 77.09637116 0.594417077 895 2988658 31.83 3723 ERS3967715 ERR4757830 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.3 LeechJ_2020__ERS3967715__bin.3 Bacillota;Clostridia;Clostridiales;Clostridiaceae;Clostridium_I NA tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967715__bin.8 99.83606557 0.229508197 139 5143447 51.18 55366 ERS3967715 ERR4757830 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967715__bin.8 LeechJ_2020__ERS3967715__bin.8 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Rouxiella NA tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967716__bin.6 70.49374589 1.851851852 421 1259511 38.15 3125 ERS3967716 ERR4757831 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. GCF_009913915.1_ASM991391v1_genomic LeechJ_2020__ERS3967716__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967716__bin.4 97.59158752 0.746268657 309 3779021 69.21 18784 ERS3967716 ERR4757831 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967716__bin.4 LeechJ_2020__ERS3967716__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Rhodovastum Rhodovastum sp937874445 tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967716__bin.10 76.71981004 0.861284973 1149 3527480 64.85 3284 ERS3967716 ERR4757831 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK045-2-L-48h-03H6_S88__bin.5 LeechJ_2020__ERS3967716__bin.10 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconacetobacter Gluconacetobacter dulcium tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967716__bin.7 60.7214176 1.225038402 433 1268239 60.35 3069 ERS3967716 ERR4757831 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967706__bin.3 LeechJ_2020__ERS3967716__bin.7 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium longum tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967716__bin.16 81.66666667 2.445652174 337 1429607 47.42 5404 ERS3967716 ERR4757831 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967703__bin.6 LeechJ_2020__ERS3967703__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus mucosae tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967716__bin.5 85.90604027 0.67114094 31 1756789 58.7 70625 ERS3967716 ERR4757831 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967715__bin.12 LeechJ_2020__ERS3967715__bin.12 Bacillota;Clostridia;Oscillospirales;Ethanoligenentaceae;Ethanoligenens NA tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967716__bin.15 98.09442548 2.673492605 280 4742670 64.19 29129 ERS3967716 ERR4757831 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967715__bin.5 LeechJ_2020__ERS3967715__bin.5 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Novosphingobium NA tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967727__bin.5 75.92806976 2.1875 667 2374041 40.13 3902 ERS3967727 ERR4757842 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 LeechJ_2020__ERS3967727__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967727__bin.6 95.70446462 1.05772898 281 2792546 46.39 15504 ERS3967727 ERR4757842 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967727__bin.9 98.50746269 1.786521936 199 2912317 58.21 22812 ERS3967727 ERR4757842 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK067-1-L-48h-05C1_S71__bin.5 LeechJ_2020__ERS3967727__bin.9 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter malorum tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967727__bin.7 98.77525253 3.196969697 40 2290615 52.05 93202 ERS3967727 ERR4757842 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967727__bin.3 98.95287958 0.130890052 83 2182950 36.31 34859 ERS3967727 ERR4757842 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.7 MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus mali A tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967727__bin.8 92.53731343 0.621890547 134 3077607 60.41 39791 ERS3967727 ERR4757842 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967728__bin.8 LeechJ_2020__ERS3967728__bin.8 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter sp937880175 tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967728__bin.8 99.75124378 0 106 3073834 60.59 59361 ERS3967728 ERR4757843 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967728__bin.8 LeechJ_2020__ERS3967728__bin.8 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter sp937880175 tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967728__bin.1 81.53769841 0.416666667 505 2649519 40.19 6775 ERS3967728 ERR4757843 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967728__bin.6 94.85012175 1.690356745 299 2797806 46.36 12541 ERS3967728 ERR4757843 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967728__bin.5 94.25631313 3.992424242 231 2156896 52.11 13067 ERS3967728 ERR4757843 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967728__bin.7 98.14220571 0.130890052 81 2170329 36.29 44853 ERS3967728 ERR4757843 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.7 MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus mali A tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967728__bin.3 98.46223428 3.03030303 223 2924368 58.09 20749 ERS3967728 ERR4757843 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK067-1-L-48h-05C1_S71__bin.5 LeechJ_2020__ERS3967727__bin.9 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter malorum tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967739__bin.3 97.74514524 0.497512438 222 2221833 56.79 13043 ERS3967739 ERR4757854 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK026-1-L-48h-02H9_S10__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967739__bin.10 96.96969697 3.03030303 284 3855960 65.27 23606 ERS3967739 ERR4757854 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK045-2-L-48h-03H6_S88__bin.5 LeechJ_2020__ERS3967739__bin.10 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconacetobacter Gluconacetobacter dulcium tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967739__bin.11 95.52238806 0 63 2957693 61.08 90384 ERS3967739 ERR4757854 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967701__bin.5 LeechJ_2020__ERS3967701__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter oxydans tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967739__bin.2 82.52622518 2.487562189 591 2598207 64.05 5473 ERS3967739 ERR4757854 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. GCF_011611525.1_ASM1161152v1_genomic GCF_011611525.1_ASM1161152v1_genomic Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter rhaeticus tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967739__bin.5 68.4079602 0.248756219 40 1484846 62.96 58620 ERS3967739 ERR4757854 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.2 LeechJ_2020__ERS3967739__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter saccharivorans tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967741__bin.6 100 0.705467372 79 1962279 37.71 50148 ERS3967741 ERR4757856 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967741__bin.13 94.07799047 1.369242779 644 4643749 53.5 11586 ERS3967741 ERR4757856 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. AlvarezOrdonezA_xxxx__Q04-21__bin.16 LeechJ_2020__ERS3967741__bin.13 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Rahnella Rahnella inusitata tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967741__bin.9 99.12609238 0 19 1853871 36.66 184384 ERS3967741 ERR4757856 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967741__bin.9 LeechJ_2020__ERS3967741__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc gasicomitatum tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967741__bin.2 97.89050728 1.38121547 184 2479327 36.45 21076 ERS3967741 ERR4757856 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. GCF_001703515.1_ASM170351v1_genomic We2_bin.full.40 Bacillota;Bacilli;Lactobacillales;Listeriaceae;Brochothrix Brochothrix thermosphacta tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967741__bin.11 84.87103175 0.595238095 93 3891072 55.52 58913 ERS3967741 ERR4757856 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. We6_bin.full.92 LeechJ_2020__ERS3967741__bin.11 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Serratia Serratia proteamaculans tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967741__bin.12 63.68421053 0 153 2690211 58.54 25634 ERS3967741 ERR4757856 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MASTER_WP4_UNINA_1__ST007_71775__bin.7 MASTER_WP4_UNINA_1__ST007_71775__bin.7 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E paraversuta tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967741__bin.14 91.57608696 1.086956522 64 2197402 42.56 63444 ERS3967741 ERR4757856 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. GCF_003946445.1_ASM394644v1_genomic GCF_003946445.1_ASM394644v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Loigolactobacillus Loigolactobacillus jiayinensis tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967741__bin.4 66.07142857 0 29 2333660 36.07 118834 ERS3967741 ERR4757856 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. LeechJ_2020__ERS3967741__bin.4 LeechJ_2020__ERS3967741__bin.4 Bacillota;Bacilli;Bacillales;Bacillaceae_G;Bacillus_A Bacillus A mycoides tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days LeechJ_2020__ERS3967741__bin.10 57 0.4 2424 7724387 41.81 3412 ERS3967741 ERR4757856 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. MortensenS_xxxx__WK065-1-L-08h-05B1_S62__bin.1 LeechJ_2020__ERS3967741__bin.10 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia fermentans tibicos water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-1-L-08h-01F1_S25__bin.1 99.2039801 0.248756219 104 2579773 52.68 39626 SAMN37604468 SRR26215769 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK001-1-L-48h-01F2_S26__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-1-L-08h-01F1_S25__bin.13 99.45652174 2.255434783 239 2890353 46.46 18896 SAMN37604468 SRR26215769 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-1-L-08h-01F1_S25__bin.5 91.87807783 3.456790123 423 1783445 39.16 4936 SAMN37604468 SRR26215769 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK001-1-L-08h-01F1_S25__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-1-L-08h-01F1_S25__bin.14 93.95754001 1.492537313 419 2586625 60.04 8318 SAMN37604468 SRR26215769 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.6 MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter papayae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-1-L-08h-01F1_S25__bin.2 77.86898839 2.504145937 410 2299544 61.37 6985 SAMN37604468 SRR26215769 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.5 MortensenS_xxxx__WK001-1-L-08h-01F1_S25__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter albidus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-1-L-08h-01F1_S25__bin.10 69.7 1.7 2619 8594908 38.97 3633 SAMN37604468 SRR26215769 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK001-1-L-08h-01F1_S25__bin.10 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-1-L-48h-01F2_S26__bin.7 100 0 76 2575203 52.89 55086 SAMN37604469 SRR26216112 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK001-1-L-48h-01F2_S26__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-1-L-48h-01F2_S26__bin.6 98.36956522 1.123188406 238 2911779 46.41 20947 SAMN37604469 SRR26216112 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-1-L-48h-01F2_S26__bin.2 70.86976912 2.878787879 487 1561232 52.35 3468 SAMN37604469 SRR26216112 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-1-L-48h-01F2_S26__bin.3 92.17813051 3.075661893 479 2149382 38.8 5319 SAMN37604469 SRR26216112 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK001T-2-L-16h-05F2_S99__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-1-L-48h-01F2_S26__bin.12 81.37870855 1.570680628 481 1820908 41.06 4307 SAMN37604469 SRR26216112 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-1-L-48h-01F2_S26__bin.10 65.51724138 1.724137931 157 2793365 58.11 28321 SAMN37604469 SRR26216112 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-1-L-48h-01F2_S26__bin.8 50.59564713 4.025327906 615 1689471 61.54 2838 SAMN37604469 SRR26216112 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.5 MortensenS_xxxx__WK001-1-L-48h-01F2_S26__bin.8 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter albidus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-2-G-48h-01C4_S1__bin.11 98.75 0.3125 63 2984346 39.96 72054 SAMN37604470 SRR26216101 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-2-G-48h-01C4_S1__bin.6 96.69384058 0.846173754 394 2824374 46.47 9843 SAMN37604470 SRR26216101 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-2-G-48h-01C4_S1__bin.1 99.82363316 1.851851852 196 2327136 38.61 18305 SAMN37604470 SRR26216101 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK001T-2-L-16h-05F2_S99__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-2-G-48h-01C4_S1__bin.9 99.47643979 0.523560209 70 2390913 40.26 55909 SAMN37604470 SRR26216101 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-2-G-48h-01C4_S1__bin.3 95.27764404 1.326699834 335 2383208 52.95 9437 SAMN37604470 SRR26216101 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK001-1-L-48h-01F2_S26__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-2-G-48h-01C4_S1__bin.7 74.8 2 2640 9081380 38.87 3876 SAMN37604470 SRR26216101 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK001-2-G-48h-01C4_S1__bin.7 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-2-L-08h-01F3_S27__bin.13 100 0 97 2573211 52.75 37212 SAMN37604471 SRR26216090 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK001-1-L-48h-01F2_S26__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-2-L-08h-01F3_S27__bin.2 97.96195652 1.086956522 279 2693268 46.7 13553 SAMN37604471 SRR26216090 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-2-L-08h-01F3_S27__bin.12 88.39443185 3.165215907 394 1567536 39.4 4712 SAMN37604471 SRR26216090 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK001T-2-L-16h-05F2_S99__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-2-L-08h-01F3_S27__bin.3 98.50746269 0.995024876 125 2995162 59.38 43763 SAMN37604471 SRR26216090 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.6 MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter papayae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-2-L-08h-01F3_S27__bin.7 97.3880597 1.243781095 263 2438729 58.74 12775 SAMN37604471 SRR26216090 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.5 99.75124378 1.243781095 82 2616968 58.26 61533 SAMN37604472 SRR26215967 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.2 99.50248756 0.497512438 95 2505008 52.87 39625 SAMN37604472 SRR26215967 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK001-1-L-48h-01F2_S26__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.3 96.69384058 2.605676329 421 2821075 46.51 8835 SAMN37604472 SRR26215967 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.7 67.03300866 3.522727273 467 1497178 52.17 3374 SAMN37604472 SRR26215967 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.9 92.20979638 3.606133015 435 1803599 39.01 4991 SAMN37604472 SRR26215967 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.6 98.50746269 0.497512438 131 3109052 59.25 45935 SAMN37604472 SRR26215967 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.6 MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter papayae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.10 97.12041885 1.047120419 449 2557876 40.8 7521 SAMN37604472 SRR26215967 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 99.375 0.3125 55 3030622 39.98 73188 SAMN37766187 SRR26348162 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.2 96.26707079 3.521903821 315 2596333 46.76 12031 SAMN37766187 SRR26348162 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK001T-2-L-04h-05E3_S91__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.4 97.38219895 0.785340314 186 2311064 40.43 17232 SAMN37766187 SRR26348162 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.1 91.8 2.1 1736 10498746 38.35 7674 SAMN37766187 SRR26348162 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-00h-05D3_S82__bin.1 57.97936959 0.520833333 687 2063335 40.17 3113 SAMN37766188 SRR26348151 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-L-00h-05D3_S82__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-00h-05D3_S82__bin.6 98.36438923 2.338386728 343 2909098 46.24 12525 SAMN37766188 SRR26348151 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK001T-2-L-04h-05E3_S91__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-00h-05D3_S82__bin.5 98.95287958 0.523560209 65 2387362 40.22 54209 SAMN37766188 SRR26348151 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-00h-05D3_S82__bin.4 53.44827586 1.724137931 537 1612482 58.83 3197 SAMN37766188 SRR26348151 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-00h-05D3_S82__bin.3 98.1 2.2 750 11388111 38.23 23457 SAMN37766188 SRR26348151 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-02h-05D7_S86__bin.1 52.07911143 0.852864583 619 1709865 40.33 2858 SAMN37766189 SRR26348141 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-L-02h-05D7_S86__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-02h-05D7_S86__bin.3 98.16650741 2.894668737 360 2875709 46.26 12090 SAMN37766189 SRR26348141 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK001T-2-L-04h-05E3_S91__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-02h-05D7_S86__bin.5 99.47643979 0.523560209 153 2398120 40.38 24694 SAMN37766189 SRR26348141 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-02h-05D7_S86__bin.2 97.8 2.2 1011 11088484 38.25 16347 SAMN37766189 SRR26348141 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-04h-05E2_S90__bin.7 63.16589444 2.572916667 654 2075254 40.3 3359 SAMN37766190 SRR26348140 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-L-04h-05E2_S90__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-04h-05E2_S90__bin.1 97.04710145 2.083333333 378 2624263 46.5 9704 SAMN37766190 SRR26348140 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK001T-2-L-04h-05E3_S91__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-04h-05E2_S90__bin.10 84.56790123 2.238656405 412 1598921 39.75 4550 SAMN37766190 SRR26348140 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK001T-2-L-16h-05F2_S99__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-04h-05E2_S90__bin.2 97.90575916 0.523560209 253 2415820 40.24 16039 SAMN37766190 SRR26348140 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-04h-05E2_S90__bin.3 87.65738755 1.741293532 471 2332838 58.55 6197 SAMN37766190 SRR26348140 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-04h-05E2_S90__bin.5 50.57459525 1.883057829 583 1659151 56.5 2894 SAMN37766190 SRR26348140 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK038-2-L-48h-03E5_S60__bin.2 MortensenS_xxxx__WK001T-1-L-04h-05E2_S90__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter_A Gluconobacter A cerinus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-04h-05E2_S90__bin.9 97.1 2.2 1189 11115691 38.32 13766 SAMN37766190 SRR26348140 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-08h-05E6_S94__bin.7 95.07575758 3.374980442 355 2643778 46.52 11193 SAMN37766191 SRR26348139 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK001T-2-L-04h-05E3_S91__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-08h-05E6_S94__bin.9 99.82363316 0.529100529 188 2166818 39.28 20607 SAMN37766191 SRR26348139 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK001T-2-L-16h-05F2_S99__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-08h-05E6_S94__bin.1 87.19895288 0.804340483 428 2097205 40.68 6134 SAMN37766191 SRR26348139 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-08h-05E6_S94__bin.4 96.46124218 0.746268657 245 2502583 58.61 15122 SAMN37766191 SRR26348139 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-08h-05E6_S94__bin.6 98 2 1041 11166414 38.27 15849 SAMN37766191 SRR26348139 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-16h-05F1_S98__bin.7 66.10577877 1.306818182 664 2159419 40.81 3604 SAMN37766192 SRR26348138 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-16h-05F1_S98__bin.6 96.8115942 2.179487179 404 2773888 46.51 8982 SAMN37766192 SRR26348138 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK001T-2-L-04h-05E3_S91__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-16h-05F1_S98__bin.1 99.29453263 0 40 1645118 39.54 69920 SAMN37766192 SRR26348138 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK001T-2-L-16h-05F2_S99__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-16h-05F1_S98__bin.2 98.95287958 0.523560209 234 2324416 40.49 15524 SAMN37766192 SRR26348138 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-16h-05F1_S98__bin.8 86.9716362 1.326699834 427 2203660 58.9 6642 SAMN37766192 SRR26348138 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-16h-05F1_S98__bin.4 95.6 2.2 1461 11059032 38.34 10287 SAMN37766192 SRR26348138 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-48h-05F9_S106__bin.6 97.26449275 3.016304348 293 2846527 46.4 13017 SAMN37766193 SRR26348137 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK001T-2-L-04h-05E3_S91__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-48h-05F9_S106__bin.7 98.50746269 0.497512438 57 2465539 58.49 65317 SAMN37766193 SRR26348137 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-48h-05F9_S106__bin.8 99.82363316 0 109 2193713 38.88 42181 SAMN37766193 SRR26348137 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK001T-2-L-16h-05F2_S99__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-48h-05F9_S106__bin.3 96.23036649 0.523560209 354 2339085 40.57 9038 SAMN37766193 SRR26348137 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-48h-05F9_S106__bin.4 94.92537313 1.699834163 250 2322968 53.15 13379 SAMN37766193 SRR26348137 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. G_514_1B_orientalis_assembly MortensenS_xxxx__WK001-1-L-48h-01F2_S26__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-1-L-48h-05F9_S106__bin.1 51.8 1.2 2423 6495178 39.09 2768 SAMN37766193 SRR26348137 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK001T-1-L-48h-05F9_S106__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-2-G-00h-05I6_S130__bin.2 99.375 0.3125 59 3044254 39.96 73189 SAMN37766194 SRR26348136 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-2-G-00h-05I6_S130__bin.1 97.33695652 2.934782609 363 2751553 46.51 10934 SAMN37766194 SRR26348136 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK001T-2-L-04h-05E3_S91__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-2-G-00h-05I6_S130__bin.3 98.69109948 0.523560209 184 2298743 40.43 19936 SAMN37766194 SRR26348136 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-2-G-00h-05I6_S130__bin.4 91.1 2.2 1895 10492770 38.39 7204 SAMN37766194 SRR26348136 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-2-L-00h-05D4_S83__bin.5 98.08667781 2.989130435 273 2918267 46.27 16317 SAMN37766195 SRR26348135 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK001T-2-L-04h-05E3_S91__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-2-L-00h-05D4_S83__bin.1 99.47643979 0.523560209 69 2400716 40.2 62188 SAMN37766195 SRR26348135 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-2-L-00h-05D4_S83__bin.4 98.3 2.1 732 11233622 38.23 22531 SAMN37766195 SRR26348135 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-2-L-02h-05D8_S87__bin.4 95.38043478 2.016443701 337 2757289 46.41 11690 SAMN37766196 SRR26348161 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK001T-2-L-04h-05E3_S91__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-2-L-02h-05D8_S87__bin.2 99.47643979 0.523560209 131 2407868 40.32 33124 SAMN37766196 SRR26348161 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-2-L-02h-05D8_S87__bin.5 97.3 2.2 951 11145792 38.25 17676 SAMN37766196 SRR26348161 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-2-L-04h-05E3_S91__bin.3 98.19188963 0.226449275 313 2768585 46.41 13080 SAMN37766197 SRR26348160 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK001T-2-L-04h-05E3_S91__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-2-L-04h-05E3_S91__bin.6 97.55671902 1.701570681 241 2441823 40.16 15901 SAMN37766197 SRR26348160 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-2-L-04h-05E3_S91__bin.2 98.4 2 717 11414721 38.23 25132 SAMN37766197 SRR26348160 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-2-L-08h-05E7_S95__bin.9 98.50543478 3.012820513 377 2805933 46.37 11035 SAMN37766198 SRR26348159 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK001T-2-L-04h-05E3_S91__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-2-L-08h-05E7_S95__bin.4 99.29453263 0.529100529 228 2224411 39.16 17673 SAMN37766198 SRR26348159 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK001T-2-L-16h-05F2_S99__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-2-L-08h-05E7_S95__bin.10 79.86910995 1.621347745 484 1892451 40.91 4628 SAMN37766198 SRR26348159 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-2-L-08h-05E7_S95__bin.8 91.069518 3.265928422 446 2399018 58.62 6473 SAMN37766198 SRR26348159 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-2-L-08h-05E7_S95__bin.3 96.5 2.1 1355 11034975 38.32 11215 SAMN37766198 SRR26348159 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-2-L-16h-05F2_S99__bin.1 90.70652174 3.103864734 354 2533801 46.65 8815 SAMN37766199 SRR26348158 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK001T-2-L-04h-05E3_S91__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-2-L-16h-05F2_S99__bin.5 99.82363316 0 35 2001015 39.11 81615 SAMN37766199 SRR26348158 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK001T-2-L-16h-05F2_S99__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-2-L-16h-05F2_S99__bin.7 98.95287958 1.396160558 239 2414916 40.5 15534 SAMN37766199 SRR26348158 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-2-L-16h-05F2_S99__bin.3 83.15285133 1.741293532 431 2161276 59.05 5843 SAMN37766199 SRR26348158 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-2-L-16h-05F2_S99__bin.6 95.3 2 1575 10898646 38.35 9474 SAMN37766199 SRR26348158 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-2-L-48h-05G1_S107__bin.8 98.41485507 2.487922705 335 2786125 46.56 12238 SAMN37766200 SRR26348157 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK001T-2-L-04h-05E3_S91__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-2-L-48h-05G1_S107__bin.5 99.82363316 0 139 2216462 38.97 32115 SAMN37766200 SRR26348157 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK001T-2-L-16h-05F2_S99__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-2-L-48h-05G1_S107__bin.7 98.00995025 0.248756219 48 2374045 58.79 94524 SAMN37766200 SRR26348157 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MAG_15 MAG_15 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-2-L-48h-05G1_S107__bin.2 97.21954742 0.746268657 239 2392254 53.21 15093 SAMN37766200 SRR26348157 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. G_514_1B_orientalis_assembly MortensenS_xxxx__WK001-1-L-48h-01F2_S26__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-2-L-48h-05G1_S107__bin.4 96.33507853 0.523560209 399 2327198 40.67 7883 SAMN37766200 SRR26348157 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK001T-2-L-48h-05G1_S107__bin.1 75.50071004 2.23880597 679 2236066 60.17 3658 SAMN37766200 SRR26348157 Ireland PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.6 MortensenS_xxxx__WK001T-2-L-48h-05G1_S107__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter papayae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK002-1-L-08h-01F5_S29__bin.4 78.30687831 0 16 1427694 39.31 144284 SAMN37604473 SRR26215956 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK002-1-L-08h-01F5_S29__bin.3 98.50746269 0 188 3144141 60.99 28019 SAMN37604473 SRR26215956 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_275_3_oxydans_assembly MortensenS_xxxx__WK002-2-L-08h-01F7_S31__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter potus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK002-1-L-08h-01F5_S29__bin.2 99.47643979 0.523560209 41 2399967 40.13 121362 SAMN37604473 SRR26215956 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 100 0 16 1772412 39.22 183472 SAMN37604474 SRR26215861 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.5 98.00995025 0 58 3093757 60.91 102047 SAMN37604474 SRR26215861 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_275_3_oxydans_assembly MortensenS_xxxx__WK002-2-L-08h-01F7_S31__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter potus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.8 85.34031414 0 35 1474961 40.21 91123 SAMN37604474 SRR26215861 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.4 94.59237901 0 244 2428416 56.1 14033 SAMN37604474 SRR26215861 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK026-1-L-48h-02H9_S10__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK002-2-G-48h-01C5_S1__bin.3 99.47089947 0 26 1799080 39.26 121423 SAMN37604475 SRR26215850 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK002-2-G-48h-01C5_S1__bin.5 98.95287958 0.523560209 32 2406070 40.18 119529 SAMN37604475 SRR26215850 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK002-2-G-48h-01C5_S1__bin.1 100 0 18 1997056 46.1 327365 SAMN37604475 SRR26215850 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK002-2-G-48h-01C5_S133__bin.3 52.63157895 0 19 1241243 38.28 143174 SAMN37604476 SRR26215839 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK002-2-G-48h-01C5_S133__bin.2 98.95287958 0.523560209 42 2407197 40.17 95271 SAMN37604476 SRR26215839 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK002-2-G-48h-01C5_S133__bin.4 100 0 13 1993875 46.11 283488 SAMN37604476 SRR26215839 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK002-2-G-48h-01C5_S2__bin.2 89.94708995 0 19 1557321 39.33 136714 SAMN37604477 SRR26216079 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK002-2-G-48h-01C5_S2__bin.4 99.47643979 0.523560209 38 2426032 40.13 101664 SAMN37604477 SRR26216079 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK002-2-G-48h-01C5_S2__bin.1 100 0 17 2020458 46.08 210362 SAMN37604477 SRR26216079 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK002-2-L-08h-01F7_S31__bin.7 98.50746269 0 149 3187479 60.97 38000 SAMN37604478 SRR26216068 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_275_3_oxydans_assembly MortensenS_xxxx__WK002-2-L-08h-01F7_S31__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter potus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK002-2-L-08h-01F7_S31__bin.2 99.47643979 0.523560209 34 2456929 40.13 121345 SAMN37604478 SRR26216068 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK002-2-L-08h-01F7_S31__bin.6 100 0 62 2012758 46.14 56284 SAMN37604478 SRR26216068 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK002-2-L-08h-01F7_S31__bin.4 64.08808232 0 456 1467492 57.1 3399 SAMN37604478 SRR26216068 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK026-1-L-48h-02H9_S10__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK002-2-L-48h-01F8_S32__bin.6 100 0 26 1937901 39.18 144284 SAMN37604479 SRR26215944 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK002-2-L-48h-01F8_S32__bin.3 98.00995025 0 73 2393109 56.35 70537 SAMN37604479 SRR26215944 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK026-1-L-48h-02H9_S10__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK002-2-L-48h-01F8_S32__bin.8 98.95287958 0.523560209 46 2367308 40.23 95224 SAMN37604479 SRR26215944 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK002-2-L-48h-01F8_S32__bin.5 100 0 35 2019513 46.09 114568 SAMN37604479 SRR26215944 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK003-1-L-08h-01F9_S33__bin.4 69.20288569 1.503623188 518 1800708 46.84 3893 SAMN37604480 SRR26215933 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK003-1-L-08h-01F9_S33__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK003-1-L-08h-01F9_S33__bin.9 90.17596601 3.147579223 419 1917924 39.02 5529 SAMN37604480 SRR26215933 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK003-1-L-08h-01F9_S33__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK003-1-L-08h-01F9_S33__bin.3 97.38219895 0.523560209 289 2355343 40.45 12986 SAMN37604480 SRR26215933 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK003-1-L-08h-01F9_S33__bin.7 97.90575916 0 72 2272244 34.83 45057 SAMN37604480 SRR26215933 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK003-2-L-08h-01G2_S35__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK003-1-L-48h-01G1_S34__bin.8 98.91304348 0 121 2690311 46.5 34079 SAMN37604481 SRR26215922 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK003-1-L-48h-01G1_S34__bin.11 98.58906526 1.234567901 200 1987509 39.11 15717 SAMN37604481 SRR26215922 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK003-1-L-48h-01G1_S34__bin.10 96.66666667 0.746268657 72 2365593 58.75 55074 SAMN37604481 SRR26215922 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 MortensenS_xxxx__WK003-1-L-48h-01G1_S34__bin.10 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lovaniensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK003-1-L-48h-01G1_S34__bin.9 97.27748691 1.238529528 342 2382779 40.3 9495 SAMN37604481 SRR26215922 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK003-1-L-48h-01G1_S34__bin.5 99.47643979 1.047120419 82 2444298 34.81 44712 SAMN37604481 SRR26215922 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK003-2-L-08h-01G2_S35__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK003-1-L-48h-01G1_S34__bin.2 64.36991484 1.243781095 856 2670160 61.67 3346 SAMN37604481 SRR26215922 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.2 MortensenS_xxxx__WK003-1-L-48h-01G1_S34__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter saccharivorans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK003-2-G-48h-01C6_S3__bin.2 98.58906526 0.264550265 207 2070677 38.92 16521 SAMN37604482 SRR26215828 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK003-2-G-48h-01C6_S3__bin.5 99.47643979 0.523560209 63 2496144 40.04 60692 SAMN37604482 SRR26215828 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK003-2-G-48h-01C6_S3__bin.4 79.58115183 0 27 1264671 34.64 96803 SAMN37604482 SRR26215828 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK003-2-L-08h-01G2_S35__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK003-2-G-48h-01C6_S3__bin.7 62.09302326 1.162790698 466 1629184 47.24 3879 SAMN37604482 SRR26215828 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.2 MortensenS_xxxx__WK003-2-G-48h-01C6_S3__bin.7 Bacillota;Bacilli;Bacillales_K;Sporolactobacillaceae;Sporolactobacillus NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK003-2-G-48h-01C6_S3__bin.1 97.4 2 974 11269521 38.22 18163 SAMN37604482 SRR26215828 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK003-2-L-08h-01G2_S35__bin.2 98.38451075 3.7213403880000002 242 2161304 38.82 12929 SAMN37604483 SRR26215817 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK003-2-L-08h-01G2_S35__bin.5 99.47643979 0.523560209 124 2357351 40.33 31666 SAMN37604483 SRR26215817 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK003-2-L-08h-01G2_S35__bin.1 99.47643979 0 43 2261908 34.89 77626 SAMN37604483 SRR26215817 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK003-2-L-08h-01G2_S35__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK003-2-L-48h-01G3_S36__bin.6 95.3319728 0.211215415 384 2639922 46.51 9512 SAMN37604484 SRR26216057 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK003-2-L-48h-01G3_S36__bin.3 96.11992945 0 44 1836812 39.31 53702 SAMN37604484 SRR26216057 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK003-2-L-48h-01G3_S36__bin.2 99.47643979 0.523560209 104 2490062 40.13 38790 SAMN37604484 SRR26216057 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK003-2-L-48h-01G3_S36__bin.8 83.76963351 0 67 2232084 34.87 54421 SAMN37604484 SRR26216057 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK003-2-L-08h-01G2_S35__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK003-2-L-48h-01G3_S36__bin.4 66.56583508 0.523560209 530 1523946 38.6 3063 SAMN37604484 SRR26216057 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 MortensenS_xxxx__WK003-2-L-48h-01G3_S36__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus ghanensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK003-2-L-48h-01G3_S36__bin.9 69.6 0.4 2825 9225479 40.05 3509 SAMN37604484 SRR26216057 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_011074885.1_ASM1107488v2_genomic MortensenS_xxxx__WK003-2-L-48h-01G3_S36__bin.9 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Brettanomyces Brettanomyces bruxellensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK004-1-L-08h-01G4_S37__bin.4 98.36956522 0.04180602 86 2692205 46.59 50181 SAMN37604485 SRR26216046 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK004-1-L-08h-01G4_S37__bin.2 98.82575758 3.196969697 14 2383232 52.43 312869 SAMN37604485 SRR26216046 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK004-1-L-08h-01G4_S37__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK004-1-L-08h-01G4_S37__bin.1 99.47643979 0.523560209 126 2504644 40.34 30020 SAMN37604485 SRR26216046 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK004-1-L-08h-01G4_S37__bin.3 99.47643979 0 60 2332356 36.61 109189 SAMN37604485 SRR26216046 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK004-1-L-48h-01G5_S38__bin.9 100 0.124378109 123 3288849 61.7 44723 SAMN37604486 SRR26216035 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.2 MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter saccharivorans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK004-1-L-48h-01G5_S38__bin.11 98.70646766 0.746268657 185 2448304 53.15 20153 SAMN37604486 SRR26216035 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK004-1-L-48h-01G5_S38__bin.13 98.36956522 0 103 2731434 46.61 43783 SAMN37604486 SRR26216035 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK004-1-L-48h-01G5_S38__bin.5 97.91666667 3.196969697 17 2278293 52.43 271415 SAMN37604486 SRR26216035 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK004-1-L-08h-01G4_S37__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK004-1-L-48h-01G5_S38__bin.4 97.90575916 0.523560209 143 2300556 40.6 21960 SAMN37604486 SRR26216035 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK004-1-L-48h-01G5_S38__bin.6 94.93159204 0.829187396 301 2274238 56.4 10320 SAMN37604486 SRR26216035 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK004-1-L-48h-01G5_S38__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK004-1-L-48h-01G5_S38__bin.12 99.47643979 0 214 2486800 36.72 19948 SAMN37604486 SRR26216035 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK004-2-G-48h-01C7_S4__bin.4 98.36956522 0 97 2694357 46.48 44506 SAMN37604487 SRR26215801 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK004-2-G-48h-01C7_S4__bin.7 73.82575758 1.96969697 15 1510155 52.73 134501 SAMN37604487 SRR26215801 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK004-1-L-08h-01G4_S37__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK004-2-G-48h-01C7_S4__bin.5 99.47643979 0.523560209 92 2559864 40 55003 SAMN37604487 SRR26215801 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK004-2-G-48h-01C7_S4__bin.6 99.47643979 0 56 2322094 36.6 109188 SAMN37604487 SRR26215801 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK004-2-G-48h-01C7_S4__bin.2 89.48088023 4.696969697 417 2216649 56.01 6894 SAMN37604487 SRR26215801 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 MortensenS_xxxx__WK033-2-L-08h-03C2_S39__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080835 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK004-2-L-08h-01G6_S39__bin.4 98.36956522 0.27173913 89 2718404 46.46 48872 SAMN37604488 SRR26215790 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK004-2-L-08h-01G6_S39__bin.2 65.34090909 1.96969697 7 1331608 52.53 271368 SAMN37604488 SRR26215790 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK004-1-L-08h-01G4_S37__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK004-2-L-08h-01G6_S39__bin.7 98.95287958 0.523560209 85 2419435 40.27 52761 SAMN37604488 SRR26215790 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK004-2-L-08h-01G6_S39__bin.5 88.48167539 0 58 2036783 36.79 89847 SAMN37604488 SRR26215790 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK004-2-L-08h-01G6_S39__bin.3 79.34379509 3.181818182 428 1991674 56.14 6039 SAMN37604488 SRR26215790 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 MortensenS_xxxx__WK004-2-L-08h-01G6_S39__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080835 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK004-2-L-08h-01G6_S39__bin.9 60.6 1.3 2614 7610093 39.09 3084 SAMN37604488 SRR26215790 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK004-2-L-08h-01G6_S39__bin.9 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.2 100 0 136 3206303 61.88 44834 SAMN37604489 SRR26216029 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.2 MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter saccharivorans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.10 98.09782609 0 108 2685048 46.52 39015 SAMN37604489 SRR26216029 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.3 70.79545455 1.96969697 11 1487806 52.58 198177 SAMN37604489 SRR26216029 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK004-1-L-08h-01G4_S37__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.7 98.10244963 0.497512438 206 2452575 53.1 16795 SAMN37604489 SRR26216029 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.1 98.42931937 1.570680628 105 2182621 40.58 32069 SAMN37604489 SRR26216029 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.6 98.16753927 1.047120419 187 2616219 36.7 28576 SAMN37604489 SRR26216029 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK005-1-L-08h-01G8_S41__bin.1 99.45652174 0 91 2715582 46.46 47974 SAMN37604490 SRR26216018 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK005-1-L-08h-01G8_S41__bin.3 94.4 2.2 1537 10737976 38.36 9235 SAMN37604490 SRR26216018 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK005-1-L-48h-01G9_S42__bin.4 99.45652174 0 93 2719647 46.46 47973 SAMN37604491 SRR26216007 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK005-1-L-48h-01G9_S42__bin.6 96.89455946 1.243781095 180 2597962 58.31 20627 SAMN37604491 SRR26216007 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. SRR10454516C127_okinawensis_assembly MortensenS_xxxx__WK005-1-L-48h-01G9_S42__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter okinawensis A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK005-1-L-48h-01G9_S42__bin.1 99.21465969 0 56 2367609 34.81 82739 SAMN37604491 SRR26216007 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK005-1-L-48h-01G9_S42__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK005-1-L-48h-01G9_S42__bin.5 85.7 2.1 2313 9885115 38.63 5086 SAMN37604491 SRR26216007 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK005-2-G-48h-01C8_S5__bin.1 99.45652174 0 91 2722027 46.46 48388 SAMN37604492 SRR26215912 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK005-2-G-48h-01C8_S5__bin.2 97.12041885 0.523560209 26 2357400 34.77 177826 SAMN37604492 SRR26215912 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK005-1-L-48h-01G9_S42__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK005-2-G-48h-01C8_S5__bin.3 98 2.2 694 11210056 38.22 25618 SAMN37604492 SRR26215912 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK005-2-L-08h-01H1_S43__bin.8 93.40588723 2.284034374 308 2563312 58.39 11898 SAMN37604493 SRR26215901 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. SRR10454516C127_okinawensis_assembly MortensenS_xxxx__WK005-1-L-48h-01G9_S42__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter okinawensis A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK005-2-L-08h-01H1_S43__bin.6 51.72413793 0 13 958927 34.36 144593 SAMN37604493 SRR26215901 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK005-1-L-48h-01G9_S42__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK005-2-L-08h-01H1_S43__bin.1 70.68965517 0 58 1763809 46.38 46365 SAMN37604493 SRR26215901 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK005-2-L-08h-01H1_S43__bin.2 76.4 1.4 2481 9013756 38.8 4158 SAMN37604493 SRR26215901 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK005-2-L-48h-01H2_S44__bin.7 99.45652174 0 95 2716687 46.46 46365 SAMN37604494 SRR26216002 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK005-2-L-48h-01H2_S44__bin.1 99.21465969 0.523560209 79 2352165 34.87 48720 SAMN37604494 SRR26216002 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK005-1-L-48h-01G9_S42__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK005-2-L-48h-01H2_S44__bin.6 55.2 1.3 2433 6694399 39.37 2885 SAMN37604494 SRR26216002 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK005-2-L-48h-01H2_S44__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK006-1-L-08h-01H3_S45__bin.7 99.00497512 0.870646766 151 2844098 57.82 34192 SAMN37604495 SRR26215995 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. SRR10454516C127_okinawensis_assembly MortensenS_xxxx__WK006-2-L-08h-01H5_S47__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter okinawensis A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK006-1-L-08h-01H3_S45__bin.6 72.2826087 0 68 2334070 46.35 59301 SAMN37604495 SRR26215995 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK006-1-L-08h-01H3_S45__bin.1 88.48167539 0 28 1640910 36.38 111835 SAMN37604495 SRR26215995 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK006-1-L-48h-01H4_S46__bin.4 99.00497512 0.165837479 166 2788174 53.96 32039 SAMN37604496 SRR26215994 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. SRR10454491C1008_acetobacter_assembly ShangpliangH_2023_b__SRR22851057__bin.11 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK006-1-L-48h-01H4_S46__bin.8 99.00497512 0 64 2715780 59.71 61322 SAMN37604496 SRR26215994 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-1-L-48h-01H4_S46__bin.8 MortensenS_xxxx__WK006-1-L-48h-01H4_S46__bin.8 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter cadivus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK006-1-L-48h-01H4_S46__bin.5 97.82608696 0.199275362 68 2801624 46.49 65201 SAMN37604496 SRR26215994 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK006-1-L-48h-01H4_S46__bin.14 96.0199005 0 38 2279779 58.85 95543 SAMN37604496 SRR26215994 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. SRR10454516C127_okinawensis_assembly MortensenS_xxxx__WK006-2-L-08h-01H5_S47__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter okinawensis A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK006-1-L-48h-01H4_S46__bin.9 99.47643979 0 97 2313641 36.6 47261 SAMN37604496 SRR26215994 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK006-1-L-48h-01H4_S46__bin.12 82.63721714 2.301998074 614 2311542 56.43 4305 SAMN37604496 SRR26215994 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_015244665.1_ASM1524466v1_genomic MortensenS_xxxx__WK006-1-L-48h-01H4_S46__bin.12 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter_A Gluconobacter A japonicus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK006-1-L-48h-01H4_S46__bin.2 83 0.4 2090 9622128 41.32 5643 SAMN37604496 SRR26215994 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygotorulaspora Zygotorulaspora florentina tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.2 94.375 0.3125 96 2891788 40.06 46502 SAMN37604497 SRR26215993 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.3 97.2826087 0.199275362 62 2732828 46.56 61271 SAMN37604497 SRR26215993 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 99.47643979 0 35 2396607 36.55 162589 SAMN37604497 SRR26215993 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.1 97.2 2.3 1161 11127476 38.28 14011 SAMN37604497 SRR26215993 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK006-2-L-08h-01H5_S47__bin.3 97.82608696 0.199275362 78 2804126 46.47 61271 SAMN37604498 SRR26215992 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK006-2-L-08h-01H5_S47__bin.4 97.26368159 0 110 2413190 58.75 34806 SAMN37604498 SRR26215992 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. SRR10454516C127_okinawensis_assembly MortensenS_xxxx__WK006-2-L-08h-01H5_S47__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter okinawensis A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK006-2-L-08h-01H5_S47__bin.5 67.24137931 0 20 1397960 36.4 292461 SAMN37604498 SRR26215992 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK006-2-L-48h-01H6_S48__bin.5 52.38498828 0.364583333 555 1476520 41.19 2788 SAMN37604499 SRR26215990 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK006-2-L-48h-01H6_S48__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK006-2-L-48h-01H6_S48__bin.4 97.82608696 0.199275362 68 2778335 46.56 61271 SAMN37604499 SRR26215990 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK006-2-L-48h-01H6_S48__bin.11 97.51243781 0.248756219 46 2468650 58.39 127492 SAMN37604499 SRR26215990 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. SRR10454516C127_okinawensis_assembly MortensenS_xxxx__WK006-2-L-08h-01H5_S47__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter okinawensis A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK006-2-L-48h-01H6_S48__bin.9 97.30915316 0.140426898 211 2715882 54.08 18393 SAMN37604499 SRR26215990 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. SRR10454491C1008_acetobacter_assembly ShangpliangH_2023_b__SRR22851057__bin.11 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK006-2-L-48h-01H6_S48__bin.8 99.47643979 0 155 2348104 36.72 28048 SAMN37604499 SRR26215990 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK006-2-L-48h-01H6_S48__bin.6 82.54187883 1.206090758 610 2703794 62.18 5370 SAMN37604499 SRR26215990 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.2 MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter saccharivorans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK006-2-L-48h-01H6_S48__bin.1 86.7 0.2 1852 9776578 41.34 6715 SAMN37604499 SRR26215990 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygotorulaspora Zygotorulaspora florentina tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK007-1-L-08h-01H7_S49__bin.9 70.27809343 0 588 2136476 40.78 4089 SAMN37604500 SRR26215989 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK007-1-L-08h-01H7_S49__bin.3 76.35869565 0 65 2315452 46.48 57708 SAMN37604500 SRR26215989 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK007-1-L-08h-01H7_S49__bin.8 91.09947644 0 126 1968480 36.65 30454 SAMN37604500 SRR26215989 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK007-1-L-08h-01H7_S49__bin.6 80.17452007 0.327225131 450 1723065 35.84 4350 SAMN37604500 SRR26215989 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK007-1-L-08h-01H7_S49__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK007-1-L-08h-01H7_S49__bin.7 61.13636364 0.151515152 11 1677118 58.82 272840 SAMN37604500 SRR26215989 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK007-2-G-48h-01D1_S7__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK007-1-L-08h-01H7_S49__bin.4 96.2 0.1 937 10292970 41.11 16028 SAMN37604500 SRR26215989 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygotorulaspora Zygotorulaspora florentina tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK007-1-L-48h-01H8_S50__bin.1 63.60571677 0.625 629 1977191 40.89 3394 SAMN37604501 SRR26215988 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK007-1-L-48h-01H8_S50__bin.3 97.82608696 0.199275362 91 2807528 46.51 47526 SAMN37604501 SRR26215988 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK007-1-L-48h-01H8_S50__bin.6 99.47643979 0 211 2285745 36.77 16280 SAMN37604501 SRR26215988 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK007-1-L-48h-01H8_S50__bin.4 74.64392276 0.785340314 451 1387795 36.24 3381 SAMN37604501 SRR26215988 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK007-1-L-48h-01H8_S50__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK007-1-L-48h-01H8_S50__bin.5 95.22727273 1.515151515 19 2450504 58.89 325391 SAMN37604501 SRR26215988 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK007-2-G-48h-01D1_S7__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK007-1-L-48h-01H8_S50__bin.2 99 0.1 490 10712082 41.03 38005 SAMN37604501 SRR26215988 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygotorulaspora Zygotorulaspora florentina tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK007-2-G-48h-01D1_S7__bin.1 96.35416667 1.0625 234 2906282 39.98 18731 SAMN37604502 SRR26215987 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK007-2-G-48h-01D1_S7__bin.4 97.82608696 0.199275362 69 2773253 46.53 65082 SAMN37604502 SRR26215987 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK007-2-G-48h-01D1_S7__bin.2 99.47643979 0 39 2317374 36.57 142603 SAMN37604502 SRR26215987 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK007-2-G-48h-01D1_S7__bin.3 98.86363636 1.515151515 14 2482956 58.9 405221 SAMN37604502 SRR26215987 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK007-2-G-48h-01D1_S7__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK007-2-G-48h-01D1_S7__bin.5 52.682939 0 364 974301 36.35 2777 SAMN37604502 SRR26215987 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK007-2-G-48h-01D1_S7__bin.5 MortensenS_xxxx__WK007-2-G-48h-01D1_S7__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK007-2-G-48h-01D1_S7__bin.6 70.6 0 2224 8407929 41.43 4313 SAMN37604502 SRR26215987 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygotorulaspora Zygotorulaspora florentina tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK007-2-L-08h-01H9_S51__bin.6 70.00241252 0.677083333 573 2231628 40.69 4210 SAMN37604503 SRR26215986 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK007-2-L-08h-01H9_S51__bin.2 97.82608696 0.307971014 77 2769678 46.54 61082 SAMN37604503 SRR26215986 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK007-2-L-08h-01H9_S51__bin.3 67.24137931 0 35 1431513 36.46 185567 SAMN37604503 SRR26215986 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK007-2-L-08h-01H9_S51__bin.4 92.93193717 0.785340314 474 2125391 35.41 5448 SAMN37604503 SRR26215986 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK007-2-L-08h-01H9_S51__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK007-2-L-08h-01H9_S51__bin.7 59.77272727 0.681818182 9 1192424 59.17 155431 SAMN37604503 SRR26215986 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK007-2-G-48h-01D1_S7__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK007-2-L-08h-01H9_S51__bin.8 99 0.1 400 10577713 41.01 43579 SAMN37604503 SRR26215986 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygotorulaspora Zygotorulaspora florentina tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.3 100 0 40 2932744 55.84 182570 SAMN37604504 SRR26215985 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_015244665.1_ASM1524466v1_genomic GCF_015244665.1_ASM1524466v1_genomic Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter_A Gluconobacter A japonicus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.8 97.82608696 0.199275362 89 2785195 46.55 44841 SAMN37604504 SRR26215985 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.2 95.22727273 1.515151515 31 2449255 58.89 124754 SAMN37604504 SRR26215985 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK007-2-G-48h-01D1_S7__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 99.1 0.1 368 10627672 41.01 49045 SAMN37604504 SRR26215985 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygotorulaspora Zygotorulaspora florentina tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK008-1-L-48h-01I3_S54__bin.6 52.73631841 0 3 1280616 56.66 951177 SAMN37604506 SRR26215983 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_015244665.1_ASM1524466v1_genomic MortensenS_xxxx__WK008-2-G-48h-01D2_S8__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter_A Gluconobacter A japonicus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK008-1-L-48h-01I3_S54__bin.3 99.85294118 0 51 5355103 45.32 175828 SAMN37604506 SRR26215983 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK008-2-G-48h-01D2_S8__bin.1 MortensenS_xxxx__WK008-2-G-48h-01D2_S8__bin.1 Bacillota;Bacilli;Paenibacillales;Paenibacillaceae;Paenibacillus Paenibacillus polymyxa C tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK008-2-G-48h-01D2_S8__bin.2 100 0 36 2977677 56.03 144567 SAMN37604507 SRR26215982 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_015244665.1_ASM1524466v1_genomic MortensenS_xxxx__WK008-2-G-48h-01D2_S8__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter_A Gluconobacter A japonicus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK008-2-G-48h-01D2_S8__bin.1 99.85294118 0 34 5473542 45.15 277377 SAMN37604507 SRR26215982 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK008-2-G-48h-01D2_S8__bin.1 MortensenS_xxxx__WK008-2-G-48h-01D2_S8__bin.1 Bacillota;Bacilli;Paenibacillales;Paenibacillaceae;Paenibacillus Paenibacillus polymyxa C tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK008-2-L-08h-01I4_S55__bin.2 68.65671642 0 5 1474480 56.46 347552 SAMN37604508 SRR26215981 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_015244665.1_ASM1524466v1_genomic MortensenS_xxxx__WK008-2-G-48h-01D2_S8__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter_A Gluconobacter A japonicus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK008-2-L-08h-01I4_S55__bin.3 62.79411765 0 21 3013189 44.5 277377 SAMN37604508 SRR26215981 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK008-2-G-48h-01D2_S8__bin.1 MortensenS_xxxx__WK008-2-G-48h-01D2_S8__bin.1 Bacillota;Bacilli;Paenibacillales;Paenibacillaceae;Paenibacillus Paenibacillus polymyxa C tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK008-2-L-48h-01I5_S56__bin.4 99.50248756 1.492537313 20 2929674 55.89 214781 SAMN37604509 SRR26215979 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_015244665.1_ASM1524466v1_genomic MortensenS_xxxx__WK008-2-G-48h-01D2_S8__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter_A Gluconobacter A japonicus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK008-2-L-48h-01I5_S56__bin.2 87.94976729 1.492537313 283 3021720 55.88 16043 SAMN37604509 SRR26215979 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967690__bin.4 MortensenS_xxxx__WK008-2-L-48h-01I5_S56__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter_A Gluconobacter A sp014132155 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK008-2-L-48h-01I5_S56__bin.1 98.67647059 0 234 5093746 45.65 32741 SAMN37604509 SRR26215979 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK008-2-G-48h-01D2_S8__bin.1 MortensenS_xxxx__WK008-2-G-48h-01D2_S8__bin.1 Bacillota;Bacilli;Paenibacillales;Paenibacillaceae;Paenibacillus Paenibacillus polymyxa C tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-1-L-08h-01I6_S57__bin.2 94.61654435 2.645502646 298 2015840 37.49 8757 SAMN37604510 SRR26215978 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-1-L-08h-01I6_S57__bin.8 98.36956522 0.108695652 100 2715070 46.62 52857 SAMN37604510 SRR26215978 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-1-L-08h-01I6_S57__bin.7 91.08585859 4.446969697 194 2202940 52.05 15327 SAMN37604510 SRR26215978 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK016-2-L-48h-02D1_S88__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-1-L-08h-01I6_S57__bin.4 69.92582897 2.71004737 526 1559325 37.42 3144 SAMN37604510 SRR26215978 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus sp030400225 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-1-L-08h-01I6_S57__bin.5 99.68709108 0.176366843 199 2180565 38.91 18615 SAMN37604510 SRR26215978 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK053-1-L-48h-04E4_S11__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-1-L-08h-01I6_S57__bin.6 99.47643979 0.261780105 177 2371489 36.73 21099 SAMN37604510 SRR26215978 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-1-L-48h-01I7_S58__bin.11 94.96927803 3.589065256 277 2063258 37.4 9632 SAMN37604511 SRR26215977 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-1-L-48h-01I7_S58__bin.13 98.36956522 0 90 2825858 46.44 48802 SAMN37604511 SRR26215977 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-1-L-48h-01I7_S58__bin.7 98.50746269 0.746268657 233 3270260 60.78 21664 SAMN37604511 SRR26215977 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967701__bin.5 MortensenS_xxxx__WK068-2-L-48h-05C7_S77__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter oxydans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-1-L-48h-01I7_S58__bin.12 97.46212121 3.247474747 44 2313965 52.21 101061 SAMN37604511 SRR26215977 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK016-2-L-48h-02D1_S88__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-1-L-48h-01I7_S58__bin.4 79.03802849 0.523560209 505 1577489 37.41 3339 SAMN37604511 SRR26215977 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus sp030400225 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-1-L-48h-01I7_S58__bin.6 95.6306537 0.854810263 120 1860091 39.45 21781 SAMN37604511 SRR26215977 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK053-1-L-48h-04E4_S11__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-1-L-48h-01I7_S58__bin.1 95.16791045 3.067993367 289 2645384 58.28 12721 SAMN37604511 SRR26215977 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lovaniensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-1-L-48h-01I7_S58__bin.8 98.42931937 3.141361257 327 2681976 36.59 11977 SAMN37604511 SRR26215977 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-1-L-48h-01I7_S58__bin.5 85.70311322 1.077943615 474 2145157 53.29 5425 SAMN37604511 SRR26215977 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK054-1-L-48h-04E8_S15__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-1-L-48h-01I7_S58__bin.9 95.06691919 4.242424242 301 2295137 56.14 10719 SAMN37604511 SRR26215977 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 MortensenS_xxxx__WK021-2-G-48h-01E6_S21__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080835 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-2-G-48h-01D3_S9__bin.9 94.6875 4.21875 433 3009748 40.09 9329 SAMN37604512 SRR26215976 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-2-G-48h-01D3_S9__bin.2 94.4501337 4.338624339 323 2114475 37.41 8951 SAMN37604512 SRR26215976 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-2-G-48h-01D3_S9__bin.5 96.19565217 0 58 2742519 46.47 70092 SAMN37604512 SRR26215976 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-2-G-48h-01D3_S9__bin.7 95.41666667 2.515151515 34 2269233 52.27 111528 SAMN37604512 SRR26215976 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK016-2-L-48h-02D1_S88__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-2-G-48h-01D3_S9__bin.8 93.05911134 0.176366843 181 1829497 39.43 15173 SAMN37604512 SRR26215976 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK053-1-L-48h-04E4_S11__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-2-G-48h-01D3_S9__bin.1 99.47643979 0.523560209 40 2329321 36.58 116274 SAMN37604512 SRR26215976 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-2-G-48h-01D3_S9__bin.4 54.5 1.3 3077 9093612 38.46 3157 SAMN37604512 SRR26215976 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK009-2-G-48h-01D3_S9__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-2-L-08h-01I8_S59__bin.3 94.5895204 3.880070547 266 1678698 37.94 8981 SAMN37604513 SRR26215975 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-2-L-08h-01I8_S59__bin.2 98.91128386 0.881834215 179 2041371 39.07 18360 SAMN37604513 SRR26215975 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK053-1-L-48h-04E4_S11__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-2-L-08h-01I8_S59__bin.11 99.47643979 0.261780105 185 2441223 36.66 22295 SAMN37604513 SRR26215975 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-2-L-08h-01I8_S59__bin.8 84.96376812 0 57 2130110 46.63 52464 SAMN37604513 SRR26215975 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-2-L-08h-01I8_S59__bin.4 61.54040404 4.621212121 49 1668271 55.9 56493 SAMN37604513 SRR26215975 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 MortensenS_xxxx__WK021-2-G-48h-01E6_S21__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080835 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-2-L-48h-01I9_S60__bin.10 100 0.746268657 229 2467138 53.11 15867 SAMN37604514 SRR26215890 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK054-1-L-48h-04E8_S15__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-2-L-48h-01I9_S60__bin.3 99.50248756 0.248756219 90 2893577 61.22 54074 SAMN37604514 SRR26215890 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967701__bin.5 MortensenS_xxxx__WK068-2-L-48h-05C7_S77__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter oxydans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-2-L-48h-01I9_S60__bin.2 96.75001422 3.324514991 261 2072595 37.49 11298 SAMN37604514 SRR26215890 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-2-L-48h-01I9_S60__bin.7 97.82608696 0.067934783 105 2776244 46.48 45127 SAMN37604514 SRR26215890 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-2-L-48h-01I9_S60__bin.11 97.46212121 3.361111111 47 2316721 52.25 94966 SAMN37604514 SRR26215890 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK016-2-L-48h-02D1_S88__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-2-L-48h-01I9_S60__bin.4 53.76859714 1.534023737 405 1045114 38.18 2675 SAMN37604514 SRR26215890 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 MortensenS_xxxx__WK009-2-L-48h-01I9_S60__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus sp030400225 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-2-L-48h-01I9_S60__bin.9 97.4341469 2.557319224 306 2033128 39.28 9031 SAMN37604514 SRR26215890 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK053-1-L-48h-04E4_S11__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-2-L-48h-01I9_S60__bin.6 97.90575916 0.698080279 363 2367706 36.79 9497 SAMN37604514 SRR26215890 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-2-L-48h-01I9_S60__bin.8 88.62171912 2.653399668 498 2471364 58.47 6281 SAMN37604514 SRR26215890 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lovaniensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK009-2-L-48h-01I9_S60__bin.12 95.02272727 4.318181818 222 2273187 56.16 14556 SAMN37604514 SRR26215890 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 MortensenS_xxxx__WK021-2-G-48h-01E6_S21__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080835 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK010-1-L-08h-02A1_S61__bin.3 50.7112452 0.597826087 476 1402520 47.04 3077 SAMN37604515 SRR26215889 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK010-1-L-08h-02A1_S61__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK010-1-L-08h-02A1_S61__bin.7 97.28535354 3.424242424 115 2262303 52.13 31951 SAMN37604515 SRR26215889 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK010-1-L-08h-02A1_S61__bin.6 97.96849088 0 166 2424721 53.17 21654 SAMN37604515 SRR26215889 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK010-1-L-08h-02A1_S61__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK010-1-L-08h-02A1_S61__bin.4 51.56834285 0.785340314 478 1395667 41.31 2978 SAMN37604515 SRR26215889 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic MortensenS_xxxx__WK010-1-L-08h-02A1_S61__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK010-1-L-08h-02A1_S61__bin.8 84.39790576 1.221640489 580 1960611 37.57 3799 SAMN37604515 SRR26215889 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK010-1-L-08h-02A1_S61__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK010-1-L-08h-02A1_S61__bin.2 100 0 10 2018295 46.08 342750 SAMN37604515 SRR26215889 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK010-1-L-48h-02A2_S62__bin.4 96.45768634 0.544523411 398 2894855 46.33 10168 SAMN37604516 SRR26215888 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK010-1-L-48h-02A2_S62__bin.1 98.82575758 2.878787879 30 2223454 52.24 136260 SAMN37604516 SRR26215888 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK010-1-L-48h-02A2_S62__bin.3 98.95287958 1.047120419 150 2328307 40.42 26885 SAMN37604516 SRR26215888 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK010-1-L-48h-02A2_S62__bin.7 82.79685411 2.22513089 613 1987303 37.54 3500 SAMN37604516 SRR26215888 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK010-1-L-48h-02A2_S62__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK010-1-L-48h-02A2_S62__bin.5 99.54751131 0 12 2004277 46.06 210318 SAMN37604516 SRR26215888 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK010-1-L-48h-02A2_S62__bin.6 61.70869139 1.492537313 467 1428394 53.51 3250 SAMN37604516 SRR26215888 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK010-1-L-08h-02A1_S61__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK010-2-G-48h-01D4_S10__bin.8 95.53883315 1.141304348 357 2823059 46.33 11116 SAMN37604517 SRR26215887 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK010-2-G-48h-01D4_S10__bin.1 98.82575758 2.878787879 39 2221932 52.23 126674 SAMN37604517 SRR26215887 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK010-2-G-48h-01D4_S10__bin.4 98.42931937 1.047120419 75 2184663 40.38 50675 SAMN37604517 SRR26215887 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK010-2-G-48h-01D4_S10__bin.3 98.42931937 3.511819768 427 2883667 36.76 9784 SAMN37604517 SRR26215887 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK010-2-G-48h-01D4_S10__bin.2 99.54751131 0 8 1973453 46.1 990460 SAMN37604517 SRR26215887 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK010-2-G-48h-01D4_S10__bin.7 98.19444444 3.929292929 195 2385563 56.04 18216 SAMN37604517 SRR26215887 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 MortensenS_xxxx__WK033-2-L-08h-03C2_S39__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080835 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK010-2-L-08h-02A3_S63__bin.3 79.94044912 0.666407867 534 2393550 46.55 5565 SAMN37604518 SRR26215886 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK010-2-L-08h-02A3_S63__bin.5 98.82575758 2.878787879 36 2235011 52.24 88244 SAMN37604518 SRR26215886 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK010-2-L-08h-02A3_S63__bin.2 96.07329843 2.879581152 254 2131747 40.77 12247 SAMN37604518 SRR26215886 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK010-2-L-08h-02A3_S63__bin.8 95.02617801 1.243455497 541 2319637 37.08 5083 SAMN37604518 SRR26215886 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK010-2-L-08h-02A3_S63__bin.1 99.54751131 0 7 1998151 46.08 363546 SAMN37604518 SRR26215886 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.6 99.3343574 0.176366843 178 2146338 37.25 21914 SAMN37604519 SRR26215884 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MortensenS_xxxx__WK054-2-L-08h-04E9_S16__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.5 97.10144928 0.108695652 265 2904251 46.39 16673 SAMN37604519 SRR26215884 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 98.82575758 2.878787879 25 2231178 52.23 175143 SAMN37604519 SRR26215884 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.2 96.64179104 0.497512438 192 2420487 53.18 19481 SAMN37604519 SRR26215884 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK010-1-L-08h-02A1_S61__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.10 99.47643979 0.618752975 127 2399143 40.36 30364 SAMN37604519 SRR26215884 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.3 92.28995263 1.439790576 478 2018236 37.32 5208 SAMN37604519 SRR26215884 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.8 100 0.45248868799999997 19 2020769 46.07 304187 SAMN37604519 SRR26215884 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK011-1-L-08h-02A5_S65__bin.5 99.47089947 2.028218695 109 1988154 37.63 26591 SAMN37604520 SRR26215883 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK011-1-L-08h-02A5_S65__bin.6 99.47643979 0.523560209 113 2454687 40.22 39361 SAMN37604520 SRR26215883 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK011-1-L-08h-02A5_S65__bin.4 95.22840344 0 81 2167905 59.2 46092 SAMN37604520 SRR26215883 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lovaniensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK011-1-L-08h-02A5_S65__bin.9 99.47643979 0 85 2410883 36.5 61070 SAMN37604520 SRR26215883 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK011-1-L-08h-02A5_S65__bin.7 70.5615942 0 33 1763577 46.48 81093 SAMN37604520 SRR26215883 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK011-1-L-08h-02A5_S65__bin.8 59.2 0.2 1918 6578086 32.69 3820 SAMN37604520 SRR26215883 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. SternesPR_2017__Y2D1_A_shotgun__bin.3 MortensenS_xxxx__WK011-1-L-08h-02A5_S65__bin.8 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycodaceae;Hanseniaspora Hanseniaspora uvarum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK011-1-L-48h-02A6_S66__bin.5 99.27849928 1.975308642 104 2044176 37.67 31610 SAMN37604521 SRR26215882 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK011-1-L-48h-02A6_S66__bin.3 98.36956522 0 113 2827298 46.44 53553 SAMN37604521 SRR26215882 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK011-1-L-48h-02A6_S66__bin.1 99.47643979 0.523560209 79 2377068 40.31 50593 SAMN37604521 SRR26215882 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK011-1-L-48h-02A6_S66__bin.10 98.67364747 0.17452007 395 2308178 37.02 8089 SAMN37604521 SRR26215882 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK011-1-L-48h-02A6_S66__bin.6 90.7063473 1.119402985 133 1941710 57.47 24128 SAMN37604521 SRR26215882 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK026-1-L-48h-02H9_S10__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK011-1-L-48h-02A6_S66__bin.8 90.60644359 1.492537313 63 2078583 59.3 51004 SAMN37604521 SRR26215882 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lovaniensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK011-2-G-48h-01D5_S11__bin.2 98.36956522 0 58 2863249 46.34 75581 SAMN37604522 SRR26215881 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK011-2-G-48h-01D5_S11__bin.1 99.47643979 0.523560209 78 2515537 40.13 64131 SAMN37604522 SRR26215881 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK011-2-G-48h-01D5_S11__bin.4 99.47643979 0 47 2440351 36.47 121260 SAMN37604522 SRR26215881 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK011-2-L-08h-02A7_S67__bin.4 99.47089947 0.529100529 93 1986781 37.75 37701 SAMN37604523 SRR26215880 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK011-2-L-08h-02A7_S67__bin.1 97.10144928 0 60 2743378 46.5 66162 SAMN37604523 SRR26215880 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK011-2-L-08h-02A7_S67__bin.3 99.47643979 0.523560209 77 2366035 40.27 58576 SAMN37604523 SRR26215880 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK011-2-L-08h-02A7_S67__bin.7 51.72413793 0 49 1037255 36.53 38366 SAMN37604523 SRR26215880 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK011-2-L-08h-02A7_S67__bin.6 90.11552088 0.870646766 413 2053349 59.34 6016 SAMN37604523 SRR26215880 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lovaniensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK011-2-L-48h-02A8_S68__bin.9 98.94179894 0.837742504 116 2071369 37.57 32996 SAMN37604524 SRR26215879 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK011-2-L-48h-02A8_S68__bin.1 98.36956522 0 159 2802555 46.41 29931 SAMN37604524 SRR26215879 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK011-2-L-48h-02A8_S68__bin.5 98.4222035 2.114427861 75 2565131 58.48 54460 SAMN37604524 SRR26215879 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lovaniensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK011-2-L-48h-02A8_S68__bin.3 97.90575916 0.523560209 97 2289357 40.45 38043 SAMN37604524 SRR26215879 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK011-2-L-48h-02A8_S68__bin.8 94.66779008 0.497512438 168 2425344 55.98 21343 SAMN37604524 SRR26215879 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK026-1-L-48h-02H9_S10__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK011-2-L-48h-02A8_S68__bin.7 98.95287958 1.047120419 307 2570066 36.75 12143 SAMN37604524 SRR26215879 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK011-2-L-48h-02A8_S68__bin.4 79.25825418 0.580431177 517 2029966 53.28 4515 SAMN37604524 SRR26215879 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK011-2-L-48h-02A8_S68__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK012-1-L-08h-02A9_S69__bin.4 98.19371728 0.759162304 422 2274884 37.06 7246 SAMN37604525 SRR26215878 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK012-1-L-08h-02A9_S69__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK012-1-L-08h-02A9_S69__bin.3 99.47643979 0.890052356 38 2521172 34.77 128157 SAMN37604525 SRR26215878 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK053-2-L-08h-04E5_S12__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK012-1-L-08h-02A9_S69__bin.5 98.64253394 0 15 2001090 45.97 229162 SAMN37604525 SRR26215878 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK012-1-L-08h-02A9_S69__bin.1 98.3030303 3.825757576 114 2632270 60.71 34074 SAMN37604525 SRR26215878 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK012-2-G-48h-01D6_S12__bin.7 MortensenS_xxxx__WK012-2-G-48h-01D6_S12__bin.7 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium tibiigranuli tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK012-1-L-48h-02B1_S70__bin.5 92.06724133 1.315881154 463 2604699 46.53 7138 SAMN37604526 SRR26215877 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK012-1-L-48h-02B1_S70__bin.2 88.83071553 0.523560209 496 1872631 37.58 4245 SAMN37604526 SRR26215877 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK012-1-L-48h-02B1_S70__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK012-1-L-48h-02B1_S70__bin.4 99.47643979 0 200 2378243 35.03 18612 SAMN37604526 SRR26215877 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK053-2-L-08h-04E5_S12__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK012-1-L-48h-02B1_S70__bin.1 98.64253394 0 8 1913665 46.11 404040 SAMN37604526 SRR26215877 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK012-1-L-48h-02B1_S70__bin.3 99.21212121 3.825757576 54 2769488 60.49 83513 SAMN37604526 SRR26215877 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK012-2-G-48h-01D6_S12__bin.7 MortensenS_xxxx__WK012-2-G-48h-01D6_S12__bin.7 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium tibiigranuli tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK012-2-G-48h-01D6_S12__bin.5 80.87426185 0.324440053 612 2272758 46.8 4264 SAMN37604527 SRR26215876 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK012-2-G-48h-01D6_S12__bin.4 79.68586387 0.785340314 93 1874986 35.2 33014 SAMN37604527 SRR26215876 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK053-2-L-08h-04E5_S12__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK012-2-G-48h-01D6_S12__bin.2 98.64253394 0 16 2019917 45.98 237414 SAMN37604527 SRR26215876 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK012-2-G-48h-01D6_S12__bin.7 99.21212121 3.825757576 45 2764071 60.5 107608 SAMN37604527 SRR26215876 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK012-2-G-48h-01D6_S12__bin.7 MortensenS_xxxx__WK012-2-G-48h-01D6_S12__bin.7 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium tibiigranuli tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK012-2-L-08h-02B2_S71__bin.2 94.58987784 0.497382199 511 2150140 37.35 5111 SAMN37604528 SRR26215875 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK012-2-L-08h-02B2_S71__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK012-2-L-08h-02B2_S71__bin.3 99.47643979 0.890052356 67 2501134 34.83 49189 SAMN37604528 SRR26215875 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK053-2-L-08h-04E5_S12__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK012-2-L-08h-02B2_S71__bin.4 98.64253394 0 11 1916416 46.11 210299 SAMN37604528 SRR26215875 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK012-2-L-08h-02B2_S71__bin.1 99.21212121 3.825757576 84 2766914 60.49 51360 SAMN37604528 SRR26215875 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK012-2-G-48h-01D6_S12__bin.7 MortensenS_xxxx__WK012-2-G-48h-01D6_S12__bin.7 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium tibiigranuli tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK012-2-L-48h-02B3_S72__bin.2 98.91304348 0 122 2861642 46.43 38023 SAMN37604529 SRR26215873 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK012-2-L-48h-02B3_S72__bin.4 94.28446771 1.657940663 479 2150259 37.24 5640 SAMN37604529 SRR26215873 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK012-1-L-08h-02A9_S69__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK012-2-L-48h-02B3_S72__bin.5 99.47643979 2.286212914 191 2439068 34.9 20623 SAMN37604529 SRR26215873 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK053-2-L-08h-04E5_S12__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK012-2-L-48h-02B3_S72__bin.6 98.64253394 0 24 2010687 46.01 131168 SAMN37604529 SRR26215873 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK012-2-L-48h-02B3_S72__bin.1 98.75757576 3.825757576 43 2754017 60.53 129443 SAMN37604529 SRR26215873 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK012-2-G-48h-01D6_S12__bin.7 MortensenS_xxxx__WK012-2-G-48h-01D6_S12__bin.7 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium tibiigranuli tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK013-1-L-08h-02B4_S73__bin.9 99.25373134 0.373134328 204 2687128 58.05 21042 SAMN37604530 SRR26215872 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. SRR10454516C127_okinawensis_assembly MortensenS_xxxx__WK013-1-L-08h-02B4_S73__bin.9 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter okinawensis A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK013-1-L-08h-02B4_S73__bin.1 99.54751131 0 12 1951603 46.24 211991 SAMN37604530 SRR26215872 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK013-1-L-48h-02B5_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK013-1-L-08h-02B4_S73__bin.4 87.5 0 53 2165789 46.64 57630 SAMN37604530 SRR26215872 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK013-1-L-48h-02B5_S74__bin.5 61.13938492 2.385416667 601 1787975 40.89 3184 SAMN37604531 SRR26215871 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK013-1-L-48h-02B5_S74__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK013-1-L-48h-02B5_S74__bin.3 98.36956522 0 94 2770269 46.51 38843 SAMN37604531 SRR26215871 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK013-1-L-48h-02B5_S74__bin.6 83.28970332 2.423577098 350 1899733 40.85 7396 SAMN37604531 SRR26215871 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK013-1-L-48h-02B5_S74__bin.2 100 0 8 1969140 46.25 270666 SAMN37604531 SRR26215871 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK013-1-L-48h-02B5_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK013-2-G-48h-01D7_S13__bin.9 90.14880952 2.528409091 277 2915231 40.15 15809 SAMN37604532 SRR26215870 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK013-2-G-48h-01D7_S13__bin.3 98.91304348 0 75 2754928 46.51 59750 SAMN37604532 SRR26215870 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK013-2-G-48h-01D7_S13__bin.10 98.95287958 0.523560209 146 2509510 39.99 26579 SAMN37604532 SRR26215870 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK013-2-G-48h-01D7_S13__bin.1 99.54751131 0 10 1951021 46.23 980003 SAMN37604532 SRR26215870 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK013-1-L-48h-02B5_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK013-2-G-48h-01D7_S13__bin.8 82.34491512 1.587569667 469 1534228 38.83 3607 SAMN37604532 SRR26215870 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 MortensenS_xxxx__WK013-2-G-48h-01D7_S13__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus ghanensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK013-2-L-08h-02B6_S75__bin.3 97.44565217 0 199 2684044 46.66 17945 SAMN37604533 SRR26215869 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK013-2-L-08h-02B6_S75__bin.1 61.80661904 0.428559365 510 1512011 37.79 3186 SAMN37604533 SRR26215869 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.7 MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus mali A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK013-2-L-08h-02B6_S75__bin.2 99.54751131 0 8 1951237 46.24 980003 SAMN37604533 SRR26215869 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK013-1-L-48h-02B5_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK013-2-L-48h-02B7_S76__bin.8 98.36956522 0 84 2821853 46.45 45465 SAMN37604534 SRR26215868 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK013-2-L-48h-02B7_S76__bin.3 87.2600349 1.386308619 517 2108396 37.07 4937 SAMN37604534 SRR26215868 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.7 MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus mali A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK013-2-L-48h-02B7_S76__bin.2 97.90575916 3.664921466 220 2311649 40.56 17612 SAMN37604534 SRR26215868 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK013-2-L-48h-02B7_S76__bin.9 99.54751131 0 8 1951617 46.23 350456 SAMN37604534 SRR26215868 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK013-1-L-48h-02B5_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK014-1-L-08h-02B8_S77__bin.2 98.95287958 2.094240838 293 2398051 40.33 12983 SAMN37604535 SRR26215867 Denmark PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK014-1-L-08h-02B8_S77__bin.6 81.15183246 0 55 1463775 36.45 49213 SAMN37604535 SRR26215867 Denmark PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK014-1-L-08h-02B8_S77__bin.3 64.70588235 0 5 1293415 46.11 775967 SAMN37604535 SRR26215867 Denmark PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK013-1-L-48h-02B5_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK014-1-L-08h-02B8_S77__bin.5 71.19565217 0 55 1926893 46.46 60503 SAMN37604535 SRR26215867 Denmark PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK014-1-L-48h-02B9_S78__bin.2 99.70149254 0.248756219 98 2482219 53.08 39908 SAMN37604536 SRR26215866 Denmark PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK014-2-L-48h-02C2_S80__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK014-1-L-48h-02B9_S78__bin.4 98.91304348 0 60 2822525 46.49 79721 SAMN37604536 SRR26215866 Denmark PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK014-1-L-48h-02B9_S78__bin.1 98.95287958 1.832460733 218 2359978 40.47 15582 SAMN37604536 SRR26215866 Denmark PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK014-1-L-48h-02B9_S78__bin.5 84.32423738 0.208234174 524 1831041 37.43 3941 SAMN37604536 SRR26215866 Denmark PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK014-1-L-48h-02B9_S78__bin.3 99.54751131 0 15 1941970 46.29 403699 SAMN37604536 SRR26215866 Denmark PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK013-1-L-48h-02B5_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK014-2-G-48h-01D8_S14__bin.3 52.59170387 2.020833333 627 1786799 40.9 2968 SAMN37604537 SRR26215865 Denmark PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK014-2-G-48h-01D8_S14__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK014-2-G-48h-01D8_S14__bin.4 98.36956522 0 68 2818525 46.43 67395 SAMN37604537 SRR26215865 Denmark PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK014-2-G-48h-01D8_S14__bin.2 91.62303665 0 203 2313627 36.55 20830 SAMN37604537 SRR26215865 Denmark PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK014-2-G-48h-01D8_S14__bin.1 99.54751131 0 13 1951469 46.24 221897 SAMN37604537 SRR26215865 Denmark PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK013-1-L-48h-02B5_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK014-2-L-08h-02C1_S79__bin.3 97.82608696 0 156 2692167 46.65 23358 SAMN37604538 SRR26215864 Denmark PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK014-2-L-08h-02C1_S79__bin.4 94.10994764 1.308900524 406 2184162 40.82 7364 SAMN37604538 SRR26215864 Denmark PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK014-2-L-08h-02C1_S79__bin.1 94.10994764 0 389 2106219 37.17 7530 SAMN37604538 SRR26215864 Denmark PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK014-2-L-08h-02C1_S79__bin.2 99.54751131 0 13 1949559 46.25 223246 SAMN37604538 SRR26215864 Denmark PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK013-1-L-48h-02B5_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK014-2-L-48h-02C2_S80__bin.1 100 0 47 2439267 53.06 75900 SAMN37604539 SRR26215779 Denmark PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK014-2-L-48h-02C2_S80__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK014-2-L-48h-02C2_S80__bin.2 98.09782609 0 112 2710323 46.65 36258 SAMN37604539 SRR26215779 Denmark PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK014-2-L-48h-02C2_S80__bin.5 73.70095142 1.047120419 493 1541981 37.88 3403 SAMN37604539 SRR26215779 Denmark PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK014-2-L-48h-02C2_S80__bin.7 99.54751131 1.131221719 91 1981422 46.32 34261 SAMN37604539 SRR26215779 Denmark PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK013-1-L-48h-02B5_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK014-2-L-48h-02C2_S80__bin.4 59.09090909 0 531 1451630 58.75 2841 SAMN37604539 SRR26215779 Denmark PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_15 MortensenS_xxxx__WK014-2-L-48h-02C2_S80__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK014-2-L-48h-02C2_S80__bin.8 54.52256071 0.364307495 593 1574695 61.13 2723 SAMN37604539 SRR26215779 Denmark PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK014-2-L-48h-02C2_S80__bin.8 MortensenS_xxxx__WK014-2-L-48h-02C2_S80__bin.8 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter oxydans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK015-1-L-08h-02C3_S81__bin.11 64.69667659 0.421401515 636 2536416 40.58 4747 SAMN37604540 SRR26215778 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK015-1-L-08h-02C3_S81__bin.5 51.72413793 0 13 965349 46.6 229780 SAMN37604540 SRR26215778 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK015-1-L-08h-02C3_S81__bin.6 65.06037831 1.745200698 531 2100845 53.94 4392 SAMN37604540 SRR26215778 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic MortensenS_xxxx__WK015-1-L-08h-02C3_S81__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK015-1-L-08h-02C3_S81__bin.2 50.75743201 0 289 859285 43.62 3190 SAMN37604540 SRR26215778 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK015-1-L-08h-02C3_S81__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK015-1-L-08h-02C3_S81__bin.4 94.7 2.2 1551 10970089 38.35 9637 SAMN37604540 SRR26215778 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK015-1-L-48h-02C4_S82__bin.3 98.75621891 0.995024876 135 3175176 60.91 36985 SAMN37604541 SRR26215777 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_275_3_oxydans_assembly MortensenS_xxxx__WK049-2-L-48h-05A9_S61__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter potus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK015-1-L-48h-02C4_S82__bin.2 86.61458333 1 431 2667487 40.48 8551 SAMN37604541 SRR26215777 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK015-1-L-48h-02C4_S82__bin.7 97.82608696 0 54 2757886 46.48 84479 SAMN37604541 SRR26215777 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK015-1-L-48h-02C4_S82__bin.11 89.28030303 2.651515152 23 1963018 52.28 122419 SAMN37604541 SRR26215777 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK016-2-L-48h-02D1_S88__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK015-1-L-48h-02C4_S82__bin.4 96.44766998 0.178253119 78 1673676 42.97 29951 SAMN37604541 SRR26215777 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK015-1-L-48h-02C4_S82__bin.8 81.04689755 3.686868687 418 1988846 56.14 5654 SAMN37604541 SRR26215777 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 MortensenS_xxxx__WK021-2-G-48h-01E6_S21__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080835 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK015-2-G-48h-01D9_S15__bin.6 97.82608696 0.57208238 50 2728984 46.49 82875 SAMN37604542 SRR26215776 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK015-2-G-48h-01D9_S15__bin.9 98.82575758 3.424242424 43 2332891 52.17 88888 SAMN37604542 SRR26215776 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK016-2-L-48h-02D1_S88__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK015-2-G-48h-01D9_S15__bin.3 98.42931937 1.047120419 183 2165573 40.68 16459 SAMN37604542 SRR26215776 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK015-2-G-48h-01D9_S15__bin.10 50 0 343 1092584 43.56 3492 SAMN37604542 SRR26215776 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK015-2-G-48h-01D9_S15__bin.4 91.6 2 1993 10604790 38.44 6728 SAMN37604542 SRR26215776 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK015-2-L-08h-02C5_S83__bin.5 64.90124459 4.259700803 668 2400624 40.78 3940 SAMN37604543 SRR26215775 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK015-2-L-08h-02C5_S83__bin.6 98.82575758 3.651515152 79 2287218 52.18 57761 SAMN37604543 SRR26215775 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK016-2-L-48h-02D1_S88__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK015-2-L-08h-02C5_S83__bin.7 59.90897832 3.320103586 474 1517734 41.22 3537 SAMN37604543 SRR26215775 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic MortensenS_xxxx__WK015-2-L-08h-02C5_S83__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK015-2-L-08h-02C5_S83__bin.3 79.34782609 0 36 1999985 46.61 81093 SAMN37604543 SRR26215775 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK015-2-L-08h-02C5_S83__bin.10 59.58945028 0.534759358 320 985201 44.01 3330 SAMN37604543 SRR26215775 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK015-2-L-08h-02C5_S83__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK015-2-L-08h-02C5_S83__bin.4 85.8 2.2 2274 10158653 38.62 5446 SAMN37604543 SRR26215775 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.3 98.36956522 0 57 2756604 46.5 79722 SAMN37604544 SRR26215774 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.13 86.09848485 2.424242424 28 1654205 52.57 99372 SAMN37604544 SRR26215774 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK016-2-L-48h-02D1_S88__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.4 81.11467657 2.094240838 343 1731998 41.23 6612 SAMN37604544 SRR26215774 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.11 96.10281924 1.492537313 398 3032786 60.96 11256 SAMN37604544 SRR26215774 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_275_3_oxydans_assembly MortensenS_xxxx__WK049-2-L-48h-05A9_S61__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter potus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.5 98.42931937 2.486910995 234 2395976 36.78 16229 SAMN37604544 SRR26215774 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.10 71.84259416 3.272251309 541 1899852 38.45 3905 SAMN37604544 SRR26215774 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus ghanensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 97.32620321 0 122 1726300 42.79 22233 SAMN37604544 SRR26215774 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.1 96.36111111 3.21969697 215 2305093 56.1 14595 SAMN37604544 SRR26215774 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 MortensenS_xxxx__WK021-2-G-48h-01E6_S21__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080835 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK016-1-L-08h-02C7_S85__bin.9 97.82608696 0 95 2818055 46.44 47801 SAMN37604545 SRR26215773 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK016-1-L-08h-02C7_S85__bin.8 98.42931937 0.523560209 323 2219100 40.59 9518 SAMN37604545 SRR26215773 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK016-1-L-08h-02C7_S85__bin.1 50.78534031 0 70 1492518 37.05 36828 SAMN37604545 SRR26215773 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK016-1-L-08h-02C7_S85__bin.3 97.6 0.2 764 10632290 41 21650 SAMN37604545 SRR26215773 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygotorulaspora Zygotorulaspora florentina tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK016-1-L-48h-02C8_S86__bin.6 98.36956522 0 108 2780010 46.51 42073 SAMN37604546 SRR26215772 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK016-1-L-48h-02C8_S86__bin.3 95.54973822 3.315881326 265 2191659 40.79 11339 SAMN37604546 SRR26215772 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK016-1-L-48h-02C8_S86__bin.1 89.22338569 1.047120419 564 2207028 37.33 4711 SAMN37604546 SRR26215772 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK016-1-L-48h-02C8_S86__bin.7 99 0.1 530 10720578 40.98 35002 SAMN37604546 SRR26215772 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygotorulaspora Zygotorulaspora florentina tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK016-2-G-48h-01E1_S16__bin.6 72.53255208 0.9375 621 2204560 40.65 4244 SAMN37604547 SRR26215771 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK016-2-G-48h-01E1_S16__bin.5 98.91304348 0 77 2909687 46.32 75595 SAMN37604547 SRR26215771 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK016-2-G-48h-01E1_S16__bin.4 96.3510101 4.611111111 50 2241112 52.25 72237 SAMN37604547 SRR26215771 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK016-2-L-48h-02D1_S88__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK016-2-G-48h-01E1_S16__bin.8 59.19763356 1.287085515 477 1276703 37.51 2770 SAMN37604547 SRR26215771 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus sp030400225 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK016-2-G-48h-01E1_S16__bin.2 99.47643979 0.523560209 72 2534084 39.98 72578 SAMN37604547 SRR26215771 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK016-2-G-48h-01E1_S16__bin.7 98.95287958 0 268 2347980 36.74 13578 SAMN37604547 SRR26215771 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK016-2-G-48h-01E1_S16__bin.1 83.54545455 2.992424242 455 1962648 56.42 4937 SAMN37604547 SRR26215771 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 MortensenS_xxxx__WK021-2-G-48h-01E6_S21__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080835 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK016-2-G-48h-01E1_S16__bin.3 87.2 1.8 2237 10096918 38.57 5490 SAMN37604547 SRR26215771 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK016-2-L-08h-02C9_S87__bin.6 50.55266955 1.818181818 352 1114053 52.52 3260 SAMN37604548 SRR26215770 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK016-2-L-48h-02D1_S88__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK016-2-L-08h-02C9_S87__bin.10 98.95287958 0.523560209 147 2288258 40.52 26542 SAMN37604548 SRR26215770 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK016-2-L-08h-02C9_S87__bin.5 99.47643979 0.523560209 243 2566522 36.68 16525 SAMN37604548 SRR26215770 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK016-2-L-08h-02C9_S87__bin.3 79.89130435 0 49 2074843 46.61 63650 SAMN37604548 SRR26215770 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK016-2-L-08h-02C9_S87__bin.8 73.1 0.1 613 8139417 40.98 19867 SAMN37604548 SRR26215770 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygotorulaspora Zygotorulaspora florentina tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK016-2-L-48h-02D1_S88__bin.3 97.82608696 0 61 2740858 46.47 65580 SAMN37604549 SRR26215768 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK016-2-L-48h-02D1_S88__bin.2 97.46212121 2.742424242 48 2243275 52.36 85742 SAMN37604549 SRR26215768 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK016-2-L-48h-02D1_S88__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK016-2-L-48h-02D1_S88__bin.4 62.51880825 1.118898835 463 1336395 37.68 3024 SAMN37604549 SRR26215768 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus sp030400225 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK016-2-L-48h-02D1_S88__bin.1 97.90575916 0.523560209 115 2516612 40.09 30852 SAMN37604549 SRR26215768 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK016-2-L-48h-02D1_S88__bin.5 98.56020942 0 286 2357119 36.79 12015 SAMN37604549 SRR26215768 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK016-2-L-48h-02D1_S88__bin.8 99.3 1.1 341 10749468 41 53454 SAMN37604549 SRR26215768 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygotorulaspora Zygotorulaspora florentina tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-1-L-08h-02D2_S89__bin.6 99.82363316 1.587301587 177 2206029 38.89 22544 SAMN37604550 SRR26215767 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-1-L-08h-02D2_S89__bin.4 95.42813714 1.587569667 467 2149337 40.77 6003 SAMN37604550 SRR26215767 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-1-L-08h-02D2_S89__bin.1 89.75324675 3.348484848 402 2215288 59.19 7159 SAMN37604550 SRR26215767 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-1-L-08h-02D2_S89__bin.2 94.79638009 0 47 1914777 46.26 64258 SAMN37604550 SRR26215767 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-1-L-48h-02D3_S90__bin.1 94.36733556 1.376811594 411 2774157 46.56 9171 SAMN37604551 SRR26215766 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK001T-2-L-04h-05E3_S91__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-1-L-48h-02D3_S90__bin.4 94.2680776 0.264550265 316 1938794 39.31 8422 SAMN37604551 SRR26215766 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-1-L-48h-02D3_S90__bin.2 98.95287958 0.523560209 219 2527350 40.29 16861 SAMN37604551 SRR26215766 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-1-L-48h-02D3_S90__bin.3 98.24494949 2.234848485 268 2379906 59.19 11769 SAMN37604551 SRR26215766 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-1-L-48h-02D3_S90__bin.6 99.09502262 0 111 2041702 46.22 37060 SAMN37604551 SRR26215766 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-1-L-48h-02D3_S90__bin.5 100 0 52 1893159 43.99 49395 SAMN37604551 SRR26215766 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas pomaceae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-2-G-48h-01E2_S17__bin.2 94.53125 0.3125 322 2843711 40.25 12567 SAMN37604552 SRR26215765 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-2-G-48h-01E2_S17__bin.3 53.91792101 1.931039975 566 1493524 46.74 2683 SAMN37604552 SRR26215765 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK017-2-G-48h-01E2_S17__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-2-G-48h-01E2_S17__bin.8 94.55782313 1.88598737 366 2063611 39.23 7559 SAMN37604552 SRR26215765 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-2-G-48h-01E2_S17__bin.4 98.42931937 0.785340314 227 2361070 40.32 17447 SAMN37604552 SRR26215765 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-2-G-48h-01E2_S17__bin.6 97.82467532 1.666666667 179 2439268 59.15 21986 SAMN37604552 SRR26215765 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-2-G-48h-01E2_S17__bin.1 99.26093514 0 147 1976093 46.4 20004 SAMN37604552 SRR26215765 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-2-G-48h-01E2_S17__bin.5 100 0 27 1894793 43.93 115275 SAMN37604552 SRR26215765 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas pomaceae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.1 71.95835034 0.44384058 585 1970958 46.99 3677 SAMN37604553 SRR26215764 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.4 99.82363316 0 37 1971953 39.09 71752 SAMN37604553 SRR26215764 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.3 98.95287958 0.523560209 368 2412445 40.48 8695 SAMN37604553 SRR26215764 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.2 98.40909091 1.060606061 100 2428462 59.08 42706 SAMN37604553 SRR26215764 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.5 99.54751131 0 132 1971445 46.48 20205 SAMN37604553 SRR26215764 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.7 99.77375566 0 59 1856808 44.1 47923 SAMN37604553 SRR26215764 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas pomaceae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-2-L-48h-02D5_S92__bin.6 80.42242704 0 433 1406329 38.76 3461 SAMN37604554 SRR26215763 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MortensenS_xxxx__WK017-2-L-48h-02D5_S92__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-2-L-48h-02D5_S92__bin.3 95.29675638 1.006864989 495 2692312 46.74 7026 SAMN37604554 SRR26215763 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK001T-2-L-04h-05E3_S91__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-2-L-48h-02D5_S92__bin.8 99.29453263 0 124 2213970 38.87 32685 SAMN37604554 SRR26215763 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-2-L-48h-02D5_S92__bin.5 98.42931937 1.047120419 301 2416519 40.33 12190 SAMN37604554 SRR26215763 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-2-L-48h-02D5_S92__bin.1 97.84090909 1.571969697 133 2418559 59.15 29396 SAMN37604554 SRR26215763 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-2-L-48h-02D5_S92__bin.4 97.51131222 0 232 1895690 46.73 11414 SAMN37604554 SRR26215763 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-2-L-48h-02D5_S92__bin.2 100 0 62 1891664 43.99 49013 SAMN37604554 SRR26215763 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas pomaceae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK017-2-L-48h-02D5_S92__bin.10 73.56132339 1.990049751 543 1771481 53.39 3641 SAMN37604554 SRR26215763 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK036-1-L-48h-03D4_S50__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-1-L-08h-02D6_S93__bin.7 95.32155797 0.634057971 378 2727597 46.62 10557 SAMN37604555 SRR26215762 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-1-L-08h-02D6_S93__bin.12 63.49206349 0 22 1355498 39.44 99258 SAMN37604555 SRR26215762 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-1-L-08h-02D6_S93__bin.8 98.25870647 2.23880597 335 3137929 62.44 14803 SAMN37604555 SRR26215762 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK028-1-L-08h-02I7_S17__bin.1 MortensenS_xxxx__WK028-1-L-08h-02I7_S17__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-1-L-08h-02D6_S93__bin.5 98.69109948 1.047120419 300 2376400 40.42 11370 SAMN37604555 SRR26215762 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-1-L-08h-02D6_S93__bin.14 95.81260365 2.960199005 196 2521803 58.8 19468 SAMN37604555 SRR26215762 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_15 MortensenS_xxxx__WK063-2-L-48h-05A1_S53__bin.8 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-1-L-08h-02D6_S93__bin.15 98.86363636 1.265151515 70 2478184 59.08 54200 SAMN37604555 SRR26215762 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-1-L-08h-02D6_S93__bin.2 100 0 76 1924723 44.07 36948 SAMN37604555 SRR26215762 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas pomaceae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-1-L-48h-02D7_S94__bin.11 100 0.497512438 162 3247272 62.22 37526 SAMN37604556 SRR26215761 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK028-1-L-08h-02I7_S17__bin.1 MortensenS_xxxx__WK028-1-L-08h-02I7_S17__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-1-L-48h-02D7_S94__bin.5 96.39671922 0.493115453 319 2803633 46.59 12403 SAMN37604556 SRR26215761 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-1-L-48h-02D7_S94__bin.7 99.29453263 0 39 1913134 39.2 84167 SAMN37604556 SRR26215761 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-1-L-48h-02D7_S94__bin.4 98.69109948 0.523560209 286 2445683 40.27 12282 SAMN37604556 SRR26215761 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-1-L-48h-02D7_S94__bin.1 93.71255283 3.140547264 355 2528959 58.79 9537 SAMN37604556 SRR26215761 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_15 MortensenS_xxxx__WK063-2-L-48h-05A1_S53__bin.8 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-1-L-48h-02D7_S94__bin.6 98.40909091 1.212121212 57 2447082 59.09 70784 SAMN37604556 SRR26215761 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-1-L-48h-02D7_S94__bin.13 67.48184611 1.069518717 353 1116751 43.75 3365 SAMN37604556 SRR26215761 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK025-2-L-48h-02H7_S8__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-1-L-48h-02D7_S94__bin.2 100 0 79 1880101 44.06 33152 SAMN37604556 SRR26215761 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas pomaceae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-1-L-48h-02D7_S94__bin.10 58.4794381 0.362769486 704 1873146 62.4 2704 SAMN37604556 SRR26215761 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.2 MortensenS_xxxx__WK018-1-L-48h-02D7_S94__bin.10 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter saccharivorans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-2-G-48h-01E3_S18__bin.1 98.125 0.4375 367 2949617 40.17 11924 SAMN37604557 SRR26215760 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-2-G-48h-01E3_S18__bin.6 80.21791868 2.087862319 621 2477953 46.25 4549 SAMN37604557 SRR26215760 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-2-G-48h-01E3_S18__bin.7 99.29453263 0 84 2058747 39.08 45145 SAMN37604557 SRR26215760 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-2-G-48h-01E3_S18__bin.4 98.95287958 0.523560209 246 2407813 40.29 14237 SAMN37604557 SRR26215760 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-2-G-48h-01E3_S18__bin.3 98.40909091 1.060606061 68 2438658 59.12 56288 SAMN37604557 SRR26215760 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-2-G-48h-01E3_S18__bin.2 91.98340875 0 345 1749893 46.83 6498 SAMN37604557 SRR26215760 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-2-G-48h-01E3_S18__bin.5 100 0 26 1895124 43.93 100474 SAMN37604557 SRR26215760 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas pomaceae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.1 93.22294553 2.016443701 335 2705560 46.68 12065 SAMN37604558 SRR26215759 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.6 98.7654321 0 31 1957508 39.16 99301 SAMN37604558 SRR26215759 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.8 98.42931937 0.523560209 339 2440751 40.34 10447 SAMN37604558 SRR26215759 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 98.86363636 1.060606061 53 2459960 59.08 83169 SAMN37604558 SRR26215759 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.9 100 0.467571644 76 1969909 44.07 33454 SAMN37604558 SRR26215759 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas pomaceae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-2-L-48h-02D9_S96__bin.1 95.50207039 0.940635452 385 2801867 46.6 9867 SAMN37604559 SRR26216111 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-2-L-48h-02D9_S96__bin.9 92.94532628 0 38 1657260 39.51 99092 SAMN37604559 SRR26216111 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-2-L-48h-02D9_S96__bin.11 97.64397906 1.483420593 333 2412443 40.37 10587 SAMN37604559 SRR26216111 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-2-L-48h-02D9_S96__bin.4 95.47715966 3.524046434 365 2415982 58.95 8542 SAMN37604559 SRR26216111 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_15 MortensenS_xxxx__WK063-2-L-48h-05A1_S53__bin.8 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-2-L-48h-02D9_S96__bin.2 98.86363636 1.060606061 71 2438555 59.13 52844 SAMN37604559 SRR26216111 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018-2-L-48h-02D9_S96__bin.5 100 0.45248868799999997 91 1957297 44.09 37506 SAMN37604559 SRR26216111 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas pomaceae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.3 98.125 0.3125 200 3083155 39.98 24265 SAMN37766201 SRR26348156 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.2 92.00734906 2.650966184 400 2496208 46.86 8324 SAMN37766201 SRR26348156 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 100 0 24 1900588 43.91 167813 SAMN37766201 SRR26348156 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas pomaceae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-1-L-00h-05D5_S84__bin.7 51.72413793 0 21 1358914 43.77 104924 SAMN37766202 SRR26348155 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas pomaceae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-1-L-02h-05D9_S88__bin.3 58.12994405 0.212862319 620 1738455 46.43 2955 SAMN37766203 SRR26348154 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK018T-1-L-02h-05D9_S88__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-1-L-02h-05D9_S88__bin.2 100 0 25 1882556 43.97 111394 SAMN37766203 SRR26348154 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas pomaceae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-1-L-04h-05E4_S92__bin.2 84.19738641 0.559947299 638 2528086 46.21 4643 SAMN37766204 SRR26348153 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-1-L-04h-05E4_S92__bin.3 100 0 36 1882236 43.99 76804 SAMN37766204 SRR26348153 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas pomaceae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-1-L-04h-05E4_S92__bin.1 63.75032219 0.762317445 687 2192255 60.9 3450 SAMN37766204 SRR26348153 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. G_275_3_oxydans_assembly MortensenS_xxxx__WK018T-1-L-04h-05E4_S92__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter potus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-1-L-08h-05E8_S96__bin.2 92.48216608 1.372044241 455 2675038 46.52 7991 SAMN37766205 SRR26348152 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-1-L-08h-05E8_S96__bin.3 100 0 27 1900972 43.93 149330 SAMN37766205 SRR26348152 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas pomaceae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-1-L-16h-05F3_S100__bin.4 96.80774539 1.299818841 318 2800400 46.49 12424 SAMN37766206 SRR26348150 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-1-L-16h-05F3_S100__bin.2 95.11343805 0.523560209 446 2223330 36.57 6409 SAMN37766206 SRR26348150 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 LeechJ_2020__ERS3967701__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus sp030400225 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-1-L-16h-05F3_S100__bin.5 79.05849457 1.645474944 514 1882340 40.97 4409 SAMN37766206 SRR26348150 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-1-L-16h-05F3_S100__bin.1 100 0 34 1895339 43.95 71173 SAMN37766206 SRR26348150 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas pomaceae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-1-L-48h-05G2_S108__bin.1 94.29778809 1.092995169 464 2577451 46.78 6874 SAMN37766207 SRR26348149 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-1-L-48h-05G2_S108__bin.4 100 0 50 1887325 43.99 53346 SAMN37766207 SRR26348149 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas pomaceae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-2-G-00h-05I8_S132__bin.5 99.375 0.3125 128 3039820 40 38956 SAMN37766208 SRR26348148 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-2-G-00h-05I8_S132__bin.3 75.76223254 0.802675585 587 1954495 46.99 3606 SAMN37766208 SRR26348148 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-2-G-00h-05I8_S132__bin.1 100 0 28 1908615 43.9 115275 SAMN37766208 SRR26348148 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas pomaceae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-2-L-00h-05D6_S85__bin.1 100 0 34 1902248 43.92 99414 SAMN37766209 SRR26348147 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas pomaceae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-2-L-02h-05E1_S89__bin.1 81.86579582 1.517210145 664 2334495 46.41 3956 SAMN37766210 SRR26348146 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK018T-2-L-02h-05E1_S89__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-2-L-02h-05E1_S89__bin.4 100 0 24 1902163 43.91 114516 SAMN37766210 SRR26348146 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas pomaceae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-2-L-04h-05E5_S93__bin.1 91.75020933 0.97826087 527 2767495 46.43 6825 SAMN37766211 SRR26348145 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-2-L-04h-05E5_S93__bin.3 100 0 27 1901980 43.91 111350 SAMN37766211 SRR26348145 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas pomaceae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-2-L-04h-05E5_S93__bin.4 50.11113786 0.016048788 672 1856364 60.93 2852 SAMN37766211 SRR26348145 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. G_275_3_oxydans_assembly MortensenS_xxxx__WK018T-2-L-04h-05E5_S93__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter potus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-2-L-08h-05E9_S97__bin.3 88.76714588 0.738654938 543 2522383 46.6 5888 SAMN37766212 SRR26348144 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-2-L-08h-05E9_S97__bin.2 100 0 32 1901419 43.93 100469 SAMN37766212 SRR26348144 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas pomaceae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-2-L-16h-05F4_S101__bin.5 96.43504141 0.389492754 221 2795424 46.53 16978 SAMN37766213 SRR26348143 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-2-L-16h-05F4_S101__bin.4 93.71727749 1.09947644 436 2220148 36.61 6791 SAMN37766213 SRR26348143 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 LeechJ_2020__ERS3967701__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus sp030400225 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-2-L-16h-05F4_S101__bin.8 94.71204188 2.302538986 428 2272436 40.72 7182 SAMN37766213 SRR26348143 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-2-L-16h-05F4_S101__bin.6 100 0 34 1968308 43.99 104927 SAMN37766213 SRR26348143 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas pomaceae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-2-L-48h-05G3_S109__bin.5 84.39845782 0.840744401 521 2411843 46.75 5937 SAMN37766214 SRR26348142 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK018T-2-L-48h-05G3_S109__bin.6 100 0 24 1900140 43.93 114383 SAMN37766214 SRR26348142 United Kingdom PRJNA1023503 SRP465618 NCBI Breselge S, Skibinska I, Yin X, Brennan L, Kilcawley K, Cotter PD. The core microbiomes and associated metabolic potential of water kefir as revealed by pan multi-omics. Commun Biol. 2025 Mar 11;8(1):415. doi: 10.1038/s42003-025-07808-3. MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas pomaceae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK019-1-L-08h-02E1_S97__bin.1 83.42151675 0 18 1345857 38.9 103503 SAMN37604560 SRR26216110 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK019-1-L-08h-02E1_S97__bin.4 98.42931937 0.523560209 343 2287439 40.54 9198 SAMN37604560 SRR26216110 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK019-1-L-08h-02E1_S97__bin.5 98.81313131 1.515151515 94 2461288 59.16 46324 SAMN37604560 SRR26216110 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK019-1-L-08h-02E1_S97__bin.6 98.64253394 2.714932127 120 1942859 44.22 26372 SAMN37604560 SRR26216110 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas pomaceae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK019-1-L-48h-02E2_S98__bin.6 53.41260605 0.793650794 372 974252 39.13 2563 SAMN37604561 SRR26216109 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MortensenS_xxxx__WK019-2-L-48h-02E4_S100__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK019-1-L-48h-02E2_S98__bin.1 99.29453263 0 98 2070137 39.14 32259 SAMN37604561 SRR26216109 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK019-1-L-48h-02E2_S98__bin.5 99.47643979 0.523560209 175 2348222 40.34 21151 SAMN37604561 SRR26216109 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK019-1-L-48h-02E2_S98__bin.3 98.86363636 1.287878788 74 2464179 59.09 52698 SAMN37604561 SRR26216109 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK019-1-L-48h-02E2_S98__bin.2 62.44343891 0 22 1278441 46.68 90466 SAMN37604561 SRR26216109 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK019-1-L-48h-02E2_S98__bin.7 66.6091954 0 708 2179401 62.38 3276 SAMN37604561 SRR26216109 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK028-1-L-08h-02I7_S17__bin.1 MortensenS_xxxx__WK028-1-L-08h-02I7_S17__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK019-2-G-48h-01E4_S19__bin.5 98.7654321 0 255 2149245 39.02 13306 SAMN37604562 SRR26216108 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK019-2-G-48h-01E4_S19__bin.1 98.42931937 1.570680628 117 2411788 40.27 34462 SAMN37604562 SRR26216108 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK019-2-G-48h-01E4_S19__bin.7 98.86363636 1.060606061 69 2479540 59.11 49026 SAMN37604562 SRR26216108 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK019-2-G-48h-01E4_S19__bin.2 97.73755656 0 111 1901933 46.42 30986 SAMN37604562 SRR26216108 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK019-2-G-48h-01E4_S19__bin.6 100 0 26 1931876 43.99 138365 SAMN37604562 SRR26216108 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas pomaceae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK019-2-L-08h-02E3_S99__bin.1 76.35765341 0.264550265 429 1414955 38.6 3557 SAMN37604563 SRR26216107 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MortensenS_xxxx__WK019-2-L-48h-02E4_S100__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK019-2-L-08h-02E3_S99__bin.8 99.22626159 0 29 1857509 39.23 99301 SAMN37604563 SRR26216107 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK019-2-L-08h-02E3_S99__bin.2 98.84816754 0.523560209 267 2427553 40.28 13564 SAMN37604563 SRR26216107 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK019-2-L-08h-02E3_S99__bin.3 97.95454545 1.670995671 168 2420238 59.14 21499 SAMN37604563 SRR26216107 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK019-2-L-08h-02E3_S99__bin.6 93.43891403 0 53 1912686 46.24 63597 SAMN37604563 SRR26216107 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK019-2-L-48h-02E4_S100__bin.6 97.18381976 1.058201058 332 1880556 38.04 7307 SAMN37604564 SRR26216106 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MortensenS_xxxx__WK019-2-L-48h-02E4_S100__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK019-2-L-48h-02E4_S100__bin.4 80.40576129 0.599256293 583 2188441 47.1 4380 SAMN37604564 SRR26216106 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK019-2-L-48h-02E4_S100__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK019-2-L-48h-02E4_S100__bin.2 99.65295557 0 82 2140063 38.96 44737 SAMN37604564 SRR26216106 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK019-2-L-48h-02E4_S100__bin.7 98.95287958 0.785340314 145 2420603 40.26 27514 SAMN37604564 SRR26216106 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK019-2-L-48h-02E4_S100__bin.1 98.86363636 2.537878788 141 2428477 59.12 26744 SAMN37604564 SRR26216106 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK019-2-L-48h-02E4_S100__bin.8 99.77375566 0 146 1954126 46.45 20108 SAMN37604564 SRR26216106 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK019-2-L-48h-02E4_S100__bin.5 99.54751131 0 45 1872869 43.96 49217 SAMN37604564 SRR26216106 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas pomaceae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK019-2-L-48h-02E4_S100__bin.3 50.60083595 0 661 1862917 62.75 2893 SAMN37604564 SRR26216106 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK028-1-L-08h-02I7_S17__bin.1 MortensenS_xxxx__WK019-2-L-48h-02E4_S100__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK020-1-L-08h-02E5_S101__bin.2 97.25125418 3.125 484 2958776 46.47 7988 SAMN37604565 SRR26216105 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK020-2-L-48h-02E8_S104__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK020-1-L-08h-02E5_S101__bin.1 97.2513089 1.387434555 329 2305956 40.4 9919 SAMN37604565 SRR26216105 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK020-1-L-08h-02E5_S101__bin.7 98.40909091 2.424242424 76 2536617 59.1 47290 SAMN37604565 SRR26216105 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK020-1-L-08h-02E5_S101__bin.8 100 0 34 2001306 46.15 100871 SAMN37604565 SRR26216105 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK020-1-L-08h-02E5_S101__bin.6 83.11648363 0.33557047 621 2387767 51.23 4327 SAMN37604565 SRR26216105 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK020-1-L-08h-02E5_S101__bin.6 MortensenS_xxxx__WK020-1-L-08h-02E5_S101__bin.6 Bacillota;Clostridia;Oscillospirales;Ethanoligenentaceae;Ethanoligenens NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK020-1-L-48h-02E6_S102__bin.9 97.11050725 3.677536232 411 2735638 46.67 9176 SAMN37604566 SRR26216104 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK001T-2-L-04h-05E3_S91__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK020-1-L-48h-02E6_S102__bin.3 97.73123909 1.701570681 333 2471421 40.02 10529 SAMN37604566 SRR26216104 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK020-1-L-48h-02E6_S102__bin.7 98.86363636 1.515151515 71 2446492 59.12 53133 SAMN37604566 SRR26216104 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK020-1-L-48h-02E6_S102__bin.5 100 0 42 2016038 46.14 86974 SAMN37604566 SRR26216104 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK020-1-L-48h-02E6_S102__bin.2 77.5862069 0 517 2361783 58.21 5564 SAMN37604566 SRR26216104 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. SRR10454516C127_okinawensis_assembly MortensenS_xxxx__WK013-1-L-08h-02B4_S73__bin.9 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter okinawensis A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK020-1-L-48h-02E6_S102__bin.4 60.71734436 1.837586262 741 2198022 56.5 3121 SAMN37604566 SRR26216104 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_015244665.1_ASM1524466v1_genomic MortensenS_xxxx__WK020-1-L-48h-02E6_S102__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter_A Gluconobacter A japonicus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK020-2-G-48h-01E5_S20__bin.5 75.88835697 0.713932806 615 2120066 46.76 3741 SAMN37604567 SRR26216103 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK020-2-G-48h-01E5_S20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK020-2-G-48h-01E5_S20__bin.7 99.47643979 2.285649947 283 2515381 40.1 13303 SAMN37604567 SRR26216103 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK020-2-G-48h-01E5_S20__bin.1 98.86363636 1.606060606 129 2429730 59.09 31019 SAMN37604567 SRR26216103 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK020-2-G-48h-01E5_S20__bin.6 100 0 14 1993686 46.11 264525 SAMN37604567 SRR26216103 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK020-2-G-48h-01E5_S20__bin.8 70.68475452 0.845665962 618 1968200 47.31 3418 SAMN37604567 SRR26216103 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.2 MortensenS_xxxx__WK020-2-G-48h-01E5_S20__bin.8 Bacillota;Bacilli;Bacillales_K;Sporolactobacillaceae;Sporolactobacillus NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK020-2-G-48h-01E5_S20__bin.3 54.9 0.5 3053 8244596 39.86 2787 SAMN37604567 SRR26216103 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_011074885.1_ASM1107488v2_genomic MortensenS_xxxx__WK020-2-G-48h-01E5_S20__bin.3 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Brettanomyces Brettanomyces bruxellensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK020-2-L-08h-02E7_S103__bin.3 97.86231884 1.983695652 506 2970436 46.44 7633 SAMN37604568 SRR26216102 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK020-2-L-08h-02E7_S103__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK020-2-L-08h-02E7_S103__bin.5 84.25974026 2.848484848 455 1870256 52.37 4635 SAMN37604568 SRR26216102 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK020-2-L-08h-02E7_S103__bin.1 96.85863874 0.523560209 352 2447920 40.11 8997 SAMN37604568 SRR26216102 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK020-2-L-08h-02E7_S103__bin.6 98.40909091 1.060606061 71 2435866 59.12 56034 SAMN37604568 SRR26216102 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK020-2-L-08h-02E7_S103__bin.7 100 0 40 2014905 46.11 78555 SAMN37604568 SRR26216102 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK020-2-L-48h-02E8_S104__bin.8 97.2509058 2.486413043 502 2981027 46.35 7949 SAMN37604569 SRR26216100 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK020-2-L-48h-02E8_S104__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK020-2-L-48h-02E8_S104__bin.6 65.32575758 2.310606061 459 1418800 52.58 3290 SAMN37604569 SRR26216100 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK020-2-L-48h-02E8_S104__bin.5 97.86212914 1.265270506 365 2554253 40 9474 SAMN37604569 SRR26216100 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK020-2-L-48h-02E8_S104__bin.3 98.86363636 1.060606061 64 2440233 59.13 70954 SAMN37604569 SRR26216100 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK020-2-L-48h-02E8_S104__bin.7 100 0 38 2072070 46 78588 SAMN37604569 SRR26216100 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK020-2-L-48h-02E8_S104__bin.1 70.46995594 3.316749585 618 1877401 58.63 3192 SAMN37604569 SRR26216100 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. SRR10454516C127_okinawensis_assembly MortensenS_xxxx__WK020-2-L-48h-02E8_S104__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter okinawensis A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK021-1-L-08h-02E9_S105__bin.3 100 0.529100529 12 1929753 37.63 236827 SAMN37604570 SRR26216099 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK021-1-L-08h-02E9_S105__bin.1 98.36956522 0 66 2823405 46.43 79390 SAMN37604570 SRR26216099 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK021-1-L-08h-02E9_S105__bin.7 83.57369507 1.112565445 569 1974216 37.26 3949 SAMN37604570 SRR26216099 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus sp030400225 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK021-1-L-08h-02E9_S105__bin.5 98.42931937 0 320 2246445 37.08 9551 SAMN37604570 SRR26216099 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK021-1-L-48h-02F1_S106__bin.6 100 0.529100529 11 1925143 37.65 236827 SAMN37604571 SRR26216098 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK021-1-L-48h-02F1_S106__bin.7 98.36956522 0 71 2824618 46.43 70118 SAMN37604571 SRR26216098 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK021-1-L-48h-02F1_S106__bin.8 98.00995025 0.497512438 55 2455694 58.67 78383 SAMN37604571 SRR26216098 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lovaniensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK021-2-G-48h-01E6_S21__bin.5 94.51171875 0.9375 256 2940279 40.1 16469 SAMN37604572 SRR26216097 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK021-2-G-48h-01E6_S21__bin.1 100 0.529100529 17 1836655 37.79 152268 SAMN37604572 SRR26216097 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK021-2-G-48h-01E6_S21__bin.2 97.82608696 0 52 2784736 46.46 75477 SAMN37604572 SRR26216097 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK021-2-G-48h-01E6_S21__bin.7 99.47643979 0 82 2570003 36.45 76067 SAMN37604572 SRR26216097 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK021-2-G-48h-01E6_S21__bin.6 97.97979798 2.878787879 53 2391895 55.95 79652 SAMN37604572 SRR26216097 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 MortensenS_xxxx__WK021-2-G-48h-01E6_S21__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080835 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK021-2-G-48h-01E6_S21__bin.3 81.5 1.7 2306 9629697 38.56 4900 SAMN37604572 SRR26216097 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK021-2-L-08h-02F2_S107__bin.2 55.02645503 0.529100529 9 976338 37.82 161184 SAMN37604573 SRR26216096 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK021-2-L-08h-02F2_S107__bin.4 80.43478261 0 43 2046944 46.61 67719 SAMN37604573 SRR26216096 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK021-2-L-08h-02F2_S107__bin.3 69.2747114 2.196969697 473 1604321 56.25 3692 SAMN37604573 SRR26216096 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 MortensenS_xxxx__WK021-2-L-08h-02F2_S107__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080835 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK021-2-L-48h-02F3_S108__bin.11 100 0.497512438 69 2806788 58.01 51155 SAMN37604574 SRR26216095 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lovaniensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK021-2-L-48h-02F3_S108__bin.10 100 0 14 1913871 37.67 201373 SAMN37604574 SRR26216095 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK021-2-L-48h-02F3_S108__bin.4 98.36956522 0 83 2815438 46.43 64906 SAMN37604574 SRR26216095 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK021-2-L-48h-02F3_S108__bin.5 91.84054678 1.582143048 517 2337859 53.08 5561 SAMN37604574 SRR26216095 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK054-1-L-48h-04E8_S15__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-1-L-08h-02F7_S112__bin.9 98.36956522 0 94 2813802 46.4 41341 SAMN37604575 SRR26216094 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-1-L-08h-02F7_S112__bin.5 90.83769634 2.356020942 437 2148182 36.77 6243 SAMN37604575 SRR26216094 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 MortensenS_xxxx__WK022-1-L-08h-02F7_S112__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus sp030400225 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-1-L-08h-02F7_S112__bin.7 97.90575916 1.047120419 119 2248950 40.48 33274 SAMN37604575 SRR26216094 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-1-L-08h-02F7_S112__bin.8 73.29842932 0.523560209 32 1755025 36.84 93033 SAMN37604575 SRR26216094 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 GCF_019444005.1_ASM1944400v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-1-L-08h-02F7_S112__bin.6 83 2.7 2393 9909499 38.63 4925 SAMN37604575 SRR26216094 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-1-L-48h-02F8_S113__bin.6 100 0.513561226 65 3057245 57.99 80470 SAMN37604576 SRR26216093 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK022-1-L-48h-02F8_S113__bin.6 MortensenS_xxxx__WK022-1-L-48h-02F8_S113__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter malorum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-1-L-48h-02F8_S113__bin.13 99.83951212 0 117 2695016 52.79 38223 SAMN37604576 SRR26216093 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK022-1-L-48h-02F8_S113__bin.13 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-1-L-48h-02F8_S113__bin.8 98.36956522 0.434782609 106 2816369 46.41 39285 SAMN37604576 SRR26216093 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-1-L-48h-02F8_S113__bin.12 97.42951907 0.573835369 135 3122015 61.15 42143 SAMN37604576 SRR26216093 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_275_3_oxydans_assembly MortensenS_xxxx__WK049-2-L-48h-05A9_S61__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter potus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-1-L-48h-02F8_S113__bin.5 99.47643979 1.047120419 153 2321773 40.46 24982 SAMN37604576 SRR26216093 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-1-L-48h-02F8_S113__bin.1 96.11318408 0.497512438 217 2241099 56.64 15648 SAMN37604576 SRR26216093 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK022-2-L-48h-02G1_S115__bin.10 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-1-L-48h-02F8_S113__bin.14 99.47643979 0 162 2474264 36.66 34417 SAMN37604576 SRR26216093 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 GCF_019444005.1_ASM1944400v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-1-L-48h-02F8_S113__bin.2 82.42667315 1.604278075 318 1474036 43.28 5728 SAMN37604576 SRR26216093 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK062-2-L-48h-04I6_S49__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-2-G-48h-01E7_S22__bin.1 98.23369565 0 96 2866229 46.33 50330 SAMN37604577 SRR26216092 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-2-G-48h-01E7_S22__bin.2 95.28795812 0.523560209 65 2252798 40.4 62038 SAMN37604577 SRR26216092 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-2-G-48h-01E7_S22__bin.5 97.95642628 4.363001745 101 2445418 36.66 44699 SAMN37604577 SRR26216092 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 GCF_019444005.1_ASM1944400v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-2-G-48h-01E7_S22__bin.6 88.1 2 2037 10160982 38.51 6156 SAMN37604577 SRR26216092 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-2-L-08h-02F9_S114__bin.12 97.65189521 0.067934783 130 2718586 46.62 34032 SAMN37604578 SRR26216091 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-2-L-08h-02F9_S114__bin.11 90.22687609 0.785340314 511 2356335 37.11 5749 SAMN37604578 SRR26216091 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 MortensenS_xxxx__WK022-2-L-08h-02F9_S114__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus sp030400225 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-2-L-08h-02F9_S114__bin.8 96.85863874 0.523560209 168 2125335 40.74 19270 SAMN37604578 SRR26216091 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-2-L-08h-02F9_S114__bin.5 94.64502998 0.414593698 287 2357531 53.23 11610 SAMN37604578 SRR26216091 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK022-1-L-48h-02F8_S113__bin.13 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-2-L-08h-02F9_S114__bin.2 81.15183246 0 33 1467938 36.43 89842 SAMN37604578 SRR26216091 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 GCF_019444005.1_ASM1944400v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-2-L-08h-02F9_S114__bin.10 82.66683445 1.222139547 717 3108691 60.96 5250 SAMN37604578 SRR26216091 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_275_3_oxydans_assembly MortensenS_xxxx__WK049-2-L-48h-05A9_S61__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter potus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-2-L-08h-02F9_S114__bin.4 72.73857983 0.746268657 429 1975957 56.79 5594 SAMN37604578 SRR26216091 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK022-2-L-48h-02G1_S115__bin.10 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-2-L-08h-02F9_S114__bin.6 51.89655172 4.310344828 447 1257331 59.55 2875 SAMN37604578 SRR26216091 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK022-1-L-48h-02F8_S113__bin.6 MortensenS_xxxx__WK022-2-L-08h-02F9_S114__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter malorum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-2-L-48h-02G1_S115__bin.12 100 1.508586102 99 2945585 58.13 47426 SAMN37604579 SRR26216089 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK022-1-L-48h-02F8_S113__bin.6 MortensenS_xxxx__WK022-1-L-48h-02F8_S113__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter malorum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-2-L-48h-02G1_S115__bin.15 99.50248756 1.658374793 209 3727747 60.24 28517 SAMN37604579 SRR26216089 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_275_3_oxydans_assembly MortensenS_xxxx__WK049-2-L-48h-05A9_S61__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter potus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-2-L-48h-02G1_S115__bin.6 98.84448724 0 109 2562434 53.08 36839 SAMN37604579 SRR26216089 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK022-1-L-48h-02F8_S113__bin.13 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-2-L-48h-02G1_S115__bin.9 98.1884058 0 109 2837988 46.4 38582 SAMN37604579 SRR26216089 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-2-L-48h-02G1_S115__bin.10 98.50746269 0.663349917 138 2416561 56.38 23976 SAMN37604579 SRR26216089 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK022-2-L-48h-02G1_S115__bin.10 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-2-L-48h-02G1_S115__bin.5 87.61400101 1.111605841 534 1936898 37.19 4383 SAMN37604579 SRR26216089 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 MortensenS_xxxx__WK022-2-L-48h-02G1_S115__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus sp030400225 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-2-L-48h-02G1_S115__bin.14 97.90575916 1.047120419 130 2219523 40.52 27702 SAMN37604579 SRR26216089 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-2-L-48h-02G1_S115__bin.2 99.47643979 1.047120419 152 2495411 36.72 26804 SAMN37604579 SRR26216089 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 GCF_019444005.1_ASM1944400v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK022-2-L-48h-02G1_S115__bin.4 93.36452763 1.604278075 224 1558602 43.25 9617 SAMN37604579 SRR26216089 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK062-2-L-48h-04I6_S49__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK023-1-L-08h-02G2_S116__bin.2 99.29453263 0 49 2015382 39.02 57681 SAMN37604580 SRR26216088 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK023-1-L-08h-02G2_S116__bin.3 99.47643979 0.523560209 64 2502832 40.02 64386 SAMN37604580 SRR26216088 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 99.82363316 0 29 2000645 38.97 100652 SAMN37604581 SRR26216086 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.4 99.47643979 0.523560209 69 2488781 40.11 60502 SAMN37604581 SRR26216086 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK023-2-G-48h-01E8_S23__bin.1 72.06727135 0 415 1282722 39.96 3410 SAMN37604582 SRR26215974 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK023-2-G-48h-01E8_S23__bin.4 99.47643979 0.523560209 69 2492512 40.06 62887 SAMN37604582 SRR26215974 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK023-2-L-08h-02G4_S118__bin.3 99.82363316 0 148 2115750 38.92 26125 SAMN37604583 SRR26215973 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK023-2-L-08h-02G4_S118__bin.1 99.47643979 0.523560209 67 2512724 40.02 60502 SAMN37604583 SRR26215973 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK023-2-L-48h-02G5_S119__bin.1 99.82363316 0 48 2094284 38.92 63884 SAMN37604584 SRR26215972 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK023-2-L-48h-02G5_S119__bin.2 99.47643979 0.523560209 72 2515385 40.03 68673 SAMN37604584 SRR26215972 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK023-2-L-48h-02G5_S119__bin.4 71.89032842 1.29092441 1015 3592355 64.67 3995 SAMN37604584 SRR26215972 Ireland PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-2-L-48h-03H6_S88__bin.5 MortensenS_xxxx__WK023-2-L-48h-02G5_S119__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconacetobacter Gluconacetobacter dulcium tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK024-1-L-08h-02G6_S120__bin.2 97.82608696 0 64 2831674 46.42 70113 SAMN37604585 SRR26215971 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK024-1-L-08h-02G6_S120__bin.1 77.2754329 3.045454545 425 1872910 52.29 5099 SAMN37604585 SRR26215971 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK016-2-L-48h-02D1_S88__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK024-1-L-08h-02G6_S120__bin.6 50 0 20 1068719 36.11 128522 SAMN37604585 SRR26215971 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK024-1-L-08h-02G6_S120__bin.5 71.6 2.1 2619 8571615 38.99 3602 SAMN37604585 SRR26215971 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK024-1-L-08h-02G6_S120__bin.5 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK024-1-L-48h-02G7_S121__bin.8 55.95605046 0.486111111 601 1617490 41.08 2798 SAMN37604586 SRR26215970 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK024-1-L-48h-02G7_S121__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK024-1-L-48h-02G7_S121__bin.2 97.82608696 0 49 2775784 46.52 83329 SAMN37604586 SRR26215970 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK024-1-L-48h-02G7_S121__bin.1 62.00757576 1.212121212 20 1196675 52.48 106017 SAMN37604586 SRR26215970 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK004-1-L-08h-01G4_S37__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK024-1-L-48h-02G7_S121__bin.6 93.87434555 1.047120419 390 2112123 40.78 7299 SAMN37604586 SRR26215970 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK024-1-L-48h-02G7_S121__bin.7 99.47643979 0 81 2279040 36.6 50784 SAMN37604586 SRR26215970 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK024-1-L-48h-02G7_S121__bin.3 50.57471264 0 533 1511501 56.74 2911 SAMN37604586 SRR26215970 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK038-2-L-48h-03E5_S60__bin.2 MortensenS_xxxx__WK024-1-L-48h-02G7_S121__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter_A Gluconobacter A cerinus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK024-2-G-48h-01E9_S24__bin.6 73.05202133 0.982599432 672 2221977 40.77 3589 SAMN37604587 SRR26215969 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK024-2-G-48h-01E9_S24__bin.7 97.82608696 0 58 2838039 46.4 79915 SAMN37604587 SRR26215969 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK024-2-G-48h-01E9_S24__bin.2 55.18939394 0.909090909 13 1081462 52.75 127889 SAMN37604587 SRR26215969 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK004-1-L-08h-01G4_S37__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK024-2-G-48h-01E9_S24__bin.5 98.84816754 0.523560209 200 2325342 40.49 17302 SAMN37604587 SRR26215969 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK024-2-G-48h-01E9_S24__bin.1 99.47643979 0 35 2240493 36.59 111217 SAMN37604587 SRR26215969 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK024-2-G-48h-01E9_S24__bin.3 62.50190883 0.995024876 617 1805985 59.26 3059 SAMN37604587 SRR26215969 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK058-1-L-48h-04G6_S31__bin.6 MortensenS_xxxx__WK024-2-G-48h-01E9_S24__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter persici tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK024-2-G-48h-01E9_S24__bin.4 90.8 1.9 2008 10587584 38.44 6666 SAMN37604587 SRR26215969 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK024-2-L-08h-02G8_S122__bin.4 97.82608696 0 50 2775168 46.49 83767 SAMN37604588 SRR26215968 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK024-2-L-08h-02G8_S122__bin.5 50 0 14 760728 52.24 106013 SAMN37604588 SRR26215968 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK004-1-L-08h-01G4_S37__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK024-2-L-08h-02G8_S122__bin.7 81.15183246 0 24 1516396 36.36 158478 SAMN37604588 SRR26215968 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK024-2-L-08h-02G8_S122__bin.1 59.56060606 1.363636364 17 1560340 52.4 116321 SAMN37604588 SRR26215968 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK016-2-L-48h-02D1_S88__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK024-2-L-08h-02G8_S122__bin.2 87 2 2230 10139610 38.57 5518 SAMN37604588 SRR26215968 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK024-2-L-48h-02G9_S123__bin.9 99.84326019 2.507836991 358 3239648 56.07 13092 SAMN37604589 SRR26215966 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK038-2-L-48h-03E5_S60__bin.2 MortensenS_xxxx__WK024-2-L-48h-02G9_S123__bin.9 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter_A Gluconobacter A cerinus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK024-2-L-48h-02G9_S123__bin.3 97.82608696 0 55 2845858 46.41 81093 SAMN37604589 SRR26215966 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK024-2-L-48h-02G9_S123__bin.1 65.34090909 1.96969697 10 1331404 52.52 165399 SAMN37604589 SRR26215966 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK004-1-L-08h-01G4_S37__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK024-2-L-48h-02G9_S123__bin.8 98.95287958 0.523560209 249 2403600 40.28 15621 SAMN37604589 SRR26215966 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK024-2-L-48h-02G9_S123__bin.4 99.47643979 0 83 2312948 36.67 61421 SAMN37604589 SRR26215966 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK024-2-L-48h-02G9_S123__bin.2 92.08928476 1.243781095 472 2651907 59.04 7062 SAMN37604589 SRR26215966 Germany PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK058-1-L-48h-04G6_S31__bin.6 MortensenS_xxxx__WK024-2-L-48h-02G9_S123__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter persici tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-1-L-08h-02H4_S5__bin.8 90.91964286 0.9375 358 2937869 40.19 11183 SAMN37604590 SRR26215965 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-1-L-08h-02H4_S5__bin.4 98.36956522 0.543478261 135 2682660 46.55 34696 SAMN37604590 SRR26215965 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-1-L-08h-02H4_S5__bin.2 98.82575758 3.045454545 59 2277070 52.14 71787 SAMN37604590 SRR26215965 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-1-L-08h-02H4_S5__bin.6 98.95287958 0.130890052 212 2353717 36.42 16885 SAMN37604590 SRR26215965 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.7 MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus mali A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-1-L-08h-02H4_S5__bin.5 50.86175042 0.523560209 416 1155717 41.39 2933 SAMN37604590 SRR26215965 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic MortensenS_xxxx__WK025-1-L-08h-02H4_S5__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-1-L-08h-02H4_S5__bin.10 82.25187187 3.208917413 546 1793103 37.65 3625 SAMN37604590 SRR26215965 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-1-L-08h-02H4_S5__bin.1 99.54751131 0 26 1985522 46.08 186863 SAMN37604590 SRR26215965 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-1-L-08h-02H4_S5__bin.9 98.12834225 0.534759358 63 1711855 43.04 35716 SAMN37604590 SRR26215965 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK025-2-L-48h-02H7_S8__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-1-L-48h-02H5_S6__bin.6 99.375 0.9375 117 3077942 39.95 47989 SAMN37604591 SRR26215964 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-1-L-48h-02H5_S6__bin.11 97.82608696 0.543478261 98 2713316 46.46 48184 SAMN37604591 SRR26215964 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-1-L-48h-02H5_S6__bin.3 98.67424242 2.878787879 34 2200303 52.14 109166 SAMN37604591 SRR26215964 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-1-L-48h-02H5_S6__bin.14 98.95287958 0.130890052 149 2147260 36.4 20847 SAMN37604591 SRR26215964 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.7 MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus mali A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-1-L-48h-02H5_S6__bin.7 97.26368159 0.497512438 278 2805432 58.37 16003 SAMN37604591 SRR26215964 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK067-1-L-48h-05C1_S71__bin.5 MortensenS_xxxx__WK025-1-L-48h-02H5_S6__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter malorum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-1-L-48h-02H5_S6__bin.4 85.81123684 3.597493257 459 1788135 41.05 4713 SAMN37604591 SRR26215964 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-1-L-48h-02H5_S6__bin.13 99.54751131 0 12 1982107 46.07 246982 SAMN37604591 SRR26215964 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-1-L-48h-02H5_S6__bin.2 69.17568543 3.371212121 476 1737546 56.25 4019 SAMN37604591 SRR26215964 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 MortensenS_xxxx__WK025-1-L-48h-02H5_S6__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080835 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-1-L-48h-02H5_S6__bin.10 67.64705882 0 8 873415 43.13 135570 SAMN37604591 SRR26215964 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK025-2-L-48h-02H7_S8__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-2-G-48h-04A1_S101__bin.1 99.375 0.3125 126 3064061 40 40520 SAMN37604592 SRR26215963 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-2-G-48h-04A1_S101__bin.4 97.91666667 2.96969697 44 2258497 52.03 88954 SAMN37604592 SRR26215963 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-2-G-48h-04A1_S101__bin.9 98.95287958 0.130890052 171 2239870 36.41 18370 SAMN37604592 SRR26215963 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.7 MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus mali A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-2-G-48h-04A1_S101__bin.2 66.43655351 1.652055089 498 1518374 41.12 3354 SAMN37604592 SRR26215963 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic MortensenS_xxxx__WK025-2-G-48h-04A1_S101__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-2-G-48h-04A1_S101__bin.8 99.54751131 0 9 1957817 46.11 457312 SAMN37604592 SRR26215963 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-2-G-48h-04A1_S101__bin.6 95.92245989 0.534759358 154 1769236 42.68 20995 SAMN37604592 SRR26215963 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK025-2-L-48h-02H7_S8__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-2-G-48h-04A1_S101__bin.3 84.17460317 4.005050505 448 2144196 56.01 5991 SAMN37604592 SRR26215963 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 MortensenS_xxxx__WK033-2-L-08h-03C2_S39__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080835 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-2-L-08h-02H6_S7__bin.5 71.61434659 0.088975694 590 2206266 40.92 4171 SAMN37604593 SRR26215962 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-2-L-08h-02H6_S7__bin.6 97.82608696 0.706521739 139 2668592 46.58 29569 SAMN37604593 SRR26215962 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-2-L-08h-02H6_S7__bin.10 98.82575758 3.575757576 54 2242874 52.19 58715 SAMN37604593 SRR26215962 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-2-L-08h-02H6_S7__bin.9 98.95287958 0.130890052 219 2421950 36.49 17972 SAMN37604593 SRR26215962 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.7 MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus mali A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-2-L-08h-02H6_S7__bin.1 88.12390925 0.523560209 543 1987436 37.69 4156 SAMN37604593 SRR26215962 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-2-L-08h-02H6_S7__bin.11 99.54751131 0 12 2041085 45.97 283756 SAMN37604593 SRR26215962 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-2-L-08h-02H6_S7__bin.12 95.98930481 0.534759358 94 1735510 42.94 29200 SAMN37604593 SRR26215962 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK025-2-L-48h-02H7_S8__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-2-L-48h-02H7_S8__bin.6 90.97619048 0.520833333 546 2696076 40.41 6054 SAMN37604594 SRR26215961 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-2-L-48h-02H7_S8__bin.3 98.64130435 0.289855072 117 2715882 46.47 40058 SAMN37604594 SRR26215961 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-2-L-48h-02H7_S8__bin.10 98.59848485 2.878787879 52 2257057 52.2 68229 SAMN37604594 SRR26215961 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-2-L-48h-02H7_S8__bin.4 97.90575916 0 358 2344166 36.82 9306 SAMN37604594 SRR26215961 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.7 MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus mali A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-2-L-48h-02H7_S8__bin.1 52.25229409 1.570680628 432 1126235 41.51 2703 SAMN37604594 SRR26215961 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic MortensenS_xxxx__WK025-2-L-48h-02H7_S8__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-2-L-48h-02H7_S8__bin.11 100 0 14 1991947 46.11 257901 SAMN37604594 SRR26215961 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-2-L-48h-02H7_S8__bin.7 98.12834225 0.534759358 77 1670543 42.99 38251 SAMN37604594 SRR26215961 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK025-2-L-48h-02H7_S8__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK025-2-L-48h-02H7_S8__bin.5 74.68632756 3.5 490 1917683 56.15 4521 SAMN37604594 SRR26215961 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 MortensenS_xxxx__WK033-2-L-08h-03C2_S39__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080835 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK026-1-L-08h-02H8_S9__bin.4 97.51243781 0.497512438 82 2246393 56.8 53521 SAMN37604595 SRR26215960 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK026-1-L-48h-02H9_S10__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK026-1-L-08h-02H8_S9__bin.5 99.47643979 1.047120419 203 2331285 40.38 17163 SAMN37604595 SRR26215960 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK026-1-L-08h-02H8_S9__bin.3 96.89393939 2.121212121 94 2517919 59.14 43669 SAMN37604595 SRR26215960 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK026-1-L-48h-02H9_S10__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK026-1-L-08h-02H8_S9__bin.2 99.09502262 0 18 1947849 46.17 157747 SAMN37604595 SRR26215960 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK026-1-L-08h-02H8_S9__bin.1 76.2 1.8 2637 9295558 38.75 3975 SAMN37604595 SRR26215960 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK026-1-L-08h-02H8_S9__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK026-1-L-48h-02H9_S10__bin.6 98.00995025 0 60 2278758 56.62 71605 SAMN37604596 SRR26215959 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK026-1-L-48h-02H9_S10__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK026-1-L-48h-02H9_S10__bin.2 98.95287958 1.570680628 72 2342953 40.28 54525 SAMN37604596 SRR26215959 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK026-1-L-48h-02H9_S10__bin.8 98.40909091 1.666666667 53 2561189 59.2 75822 SAMN37604596 SRR26215959 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK026-1-L-48h-02H9_S10__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK026-1-L-48h-02H9_S10__bin.1 99.54751131 0 10 2002122 46.07 342979 SAMN37604596 SRR26215959 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK026-1-L-48h-02H9_S10__bin.3 89.02998236 3.659611993 419 1681990 38.16 4660 SAMN37604596 SRR26215959 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK031-1-L-48h-03B2_S30__bin.1 MortensenS_xxxx__WK031-1-L-48h-03B2_S30__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc suionicum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK026-1-L-48h-02H9_S10__bin.5 77.4 1.4 2486 9113350 38.64 4109 SAMN37604596 SRR26215959 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK026-1-L-48h-02H9_S10__bin.5 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK026-2-G-48h-04A2_S102__bin.5 97.6875 1.875 259 3109965 39.98 17601 SAMN37604597 SRR26215958 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK026-2-G-48h-04A2_S102__bin.1 96.23036649 2.440466137 234 2167594 40.69 13234 SAMN37604597 SRR26215958 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK026-2-G-48h-04A2_S102__bin.3 76.03515735 3.246073298 585 1823611 36.12 3379 SAMN37604597 SRR26215958 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK026-2-G-48h-04A2_S102__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK026-2-G-48h-04A2_S102__bin.2 98.40909091 1.666666667 64 2503781 59.13 64274 SAMN37604597 SRR26215958 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK026-1-L-48h-02H9_S10__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK026-2-G-48h-04A2_S102__bin.6 98.64253394 0 14 1941836 46.12 210235 SAMN37604597 SRR26215958 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK026-2-L-08h-02I1_S11__bin.4 92.56544503 1.047120419 373 2080867 40.85 7222 SAMN37604598 SRR26215957 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK026-2-L-08h-02I1_S11__bin.8 94.70886879 2.64341609 505 2535732 35.15 6550 SAMN37604598 SRR26215957 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK026-2-L-08h-02I1_S11__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK026-2-L-08h-02I1_S11__bin.3 98.40909091 1.666666667 68 2551793 59.21 66499 SAMN37604598 SRR26215957 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK026-1-L-48h-02H9_S10__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK026-2-L-08h-02I1_S11__bin.1 98.19004525 0 7 1956639 46.08 990461 SAMN37604598 SRR26215957 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK026-2-L-08h-02I1_S11__bin.2 86.20689655 0 130 2164223 56.96 28490 SAMN37604598 SRR26215957 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK026-1-L-48h-02H9_S10__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK026-2-L-08h-02I1_S11__bin.6 68.3 1.5 2817 8909284 38.9 3439 SAMN37604598 SRR26215957 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK026-2-L-08h-02I1_S11__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK026-2-L-48h-02I2_S12__bin.6 97.01570681 1.047120419 308 2244266 40.64 10069 SAMN37604599 SRR26215955 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK026-2-L-48h-02I2_S12__bin.5 96.57306045 1.64921466 447 2429179 35.31 6923 SAMN37604599 SRR26215955 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK026-2-L-48h-02I2_S12__bin.4 97.27272727 1.78030303 183 2499827 59.08 21897 SAMN37604599 SRR26215955 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK026-1-L-48h-02H9_S10__bin.8 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK026-2-L-48h-02I2_S12__bin.2 100 0 14 1993867 46.12 246965 SAMN37604599 SRR26215955 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK026-2-L-48h-02I2_S12__bin.1 88.02922703 0.621890547 284 2040924 57.03 9982 SAMN37604599 SRR26215955 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK026-1-L-48h-02H9_S10__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK026-2-L-48h-02I2_S12__bin.8 77.47795414 0.264550265 410 1411334 38.43 3744 SAMN37604599 SRR26215955 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK031-1-L-48h-03B2_S30__bin.1 MortensenS_xxxx__WK031-1-L-48h-03B2_S30__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc suionicum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK027-1-L-08h-02I3_S13__bin.4 99.50248756 0 84 2817231 54.64 48856 SAMN37604600 SRR26215954 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK027-1-L-48h-02I4_S14__bin.10 MortensenS_xxxx__WK027-1-L-48h-02I4_S14__bin.10 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter indonesiensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK027-1-L-08h-02I3_S13__bin.11 99.375 1.25 141 3008220 39.94 36654 SAMN37604600 SRR26215954 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK027-2-G-48h-04A3_S103__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK027-1-L-08h-02I3_S13__bin.6 58.61574009 0.330687831 361 981041 39.14 2767 SAMN37604600 SRR26215954 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MortensenS_xxxx__WK027-1-L-08h-02I3_S13__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK027-1-L-08h-02I3_S13__bin.1 98.95287958 0.523560209 43 2391805 40.16 99250 SAMN37604600 SRR26215954 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK027-1-L-08h-02I3_S13__bin.10 98.64253394 0 177 1910516 46.61 16501 SAMN37604600 SRR26215954 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK027-1-L-08h-02I3_S13__bin.15 71.07090582 1.094716802 561 2167004 54.17 4413 SAMN37604600 SRR26215954 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic MortensenS_xxxx__WK027-2-G-48h-04A3_S103__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK027-1-L-08h-02I3_S13__bin.13 58.70646766 0 10 1194657 55.88 174910 SAMN37604600 SRR26215954 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK026-1-L-48h-02H9_S10__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK027-1-L-08h-02I3_S13__bin.8 93.4 2 1670 10780086 38.42 8462 SAMN37604600 SRR26215954 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK027-1-L-48h-02I4_S14__bin.10 100 0 44 3156800 54.07 143517 SAMN37604601 SRR26215953 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK027-1-L-48h-02I4_S14__bin.10 MortensenS_xxxx__WK027-1-L-48h-02I4_S14__bin.10 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter indonesiensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK027-1-L-48h-02I4_S14__bin.2 99.375 1.25 235 3068388 39.89 22610 SAMN37604601 SRR26215953 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK027-2-G-48h-04A3_S103__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK027-1-L-48h-02I4_S14__bin.8 55.43352108 0 325 872921 39.26 2793 SAMN37604601 SRR26215953 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MortensenS_xxxx__WK027-1-L-48h-02I4_S14__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK027-1-L-48h-02I4_S14__bin.9 99.47643979 0.523560209 83 2377458 40.31 45270 SAMN37604601 SRR26215953 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK027-2-G-48h-04A3_S103__bin.2 99.375 0.625 122 2941043 39.96 42267 SAMN37604602 SRR26215952 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK027-2-G-48h-04A3_S103__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK027-2-G-48h-04A3_S103__bin.6 99.47643979 0.523560209 64 2412955 40.21 75324 SAMN37604602 SRR26215952 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK027-2-G-48h-04A3_S103__bin.1 99.54751131 0 121 1941804 46.46 22816 SAMN37604602 SRR26215952 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK027-2-G-48h-04A3_S103__bin.5 98.69109948 1.047120419 43 3181898 53.45 124605 SAMN37604602 SRR26215952 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic MortensenS_xxxx__WK027-2-G-48h-04A3_S103__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK027-2-G-48h-04A3_S103__bin.3 93 2 1631 10679263 38.41 9122 SAMN37604602 SRR26215952 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK027-2-L-08h-02I5_S15__bin.5 94.625 1.875 260 2895470 40.1 16165 SAMN37604603 SRR26215951 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK027-2-G-48h-04A3_S103__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK027-2-L-08h-02I5_S15__bin.8 98.95287958 0.523560209 118 2339367 40.45 31823 SAMN37604603 SRR26215951 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK027-2-L-08h-02I5_S15__bin.7 59.77904448 1.131221719 391 1110443 47.06 2924 SAMN37604603 SRR26215951 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK027-2-L-08h-02I5_S15__bin.10 68.15920398 0.497512438 28 1520612 56.93 111001 SAMN37604603 SRR26215951 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK026-1-L-48h-02H9_S10__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK027-2-L-08h-02I5_S15__bin.4 94.1 2.1 1686 10762546 38.42 8379 SAMN37604603 SRR26215951 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK027-2-L-48h-02I6_S16__bin.3 70.1692523 3.758414361 482 1511340 41.35 3341 SAMN37604604 SRR26215950 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK027-2-L-48h-02I6_S16__bin.2 77.6119403 0 19 1621833 57.01 174910 SAMN37604604 SRR26215950 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK026-1-L-48h-02H9_S10__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK028-1-L-08h-02I7_S17__bin.1 100 0.497512438 84 3358251 62.1 59275 SAMN37604605 SRR26215949 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK028-1-L-08h-02I7_S17__bin.1 MortensenS_xxxx__WK028-1-L-08h-02I7_S17__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK028-1-L-08h-02I7_S17__bin.3 99.70149254 0 55 2631082 52.68 78218 SAMN37604605 SRR26215949 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK054-1-L-48h-04E8_S15__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK028-1-L-08h-02I7_S17__bin.4 74.0050053 1.047120419 488 1704673 41.24 3820 SAMN37604605 SRR26215949 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK028-1-L-08h-02I7_S17__bin.6 99.88764045 0 85 1683195 39.16 36700 SAMN37604605 SRR26215949 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc citreum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK028-1-L-48h-02I8_S18__bin.1 100 0.497512438 116 2713045 52.53 42014 SAMN37604606 SRR26215948 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK054-1-L-48h-04E8_S15__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK028-1-L-48h-02I8_S18__bin.2 100 0.497512438 143 3269783 62.23 41344 SAMN37604606 SRR26215948 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK028-1-L-08h-02I7_S17__bin.1 MortensenS_xxxx__WK028-1-L-08h-02I7_S17__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK028-1-L-48h-02I8_S18__bin.3 99.47643979 0.523560209 48 2411242 40.15 87589 SAMN37604606 SRR26215948 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK028-1-L-48h-02I8_S18__bin.4 100 0 71 1948095 46.28 57173 SAMN37604606 SRR26215948 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK028-1-L-48h-02I8_S18__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK028-1-L-48h-02I8_S18__bin.5 99.88764045 0 22 1743454 38.98 101449 SAMN37604606 SRR26215948 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc citreum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK028-2-G-48h-04A4_S104__bin.1 99.50248756 0.045228403 153 2463206 53.1 24676 SAMN37604607 SRR26215946 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK054-1-L-48h-04E8_S15__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK028-2-G-48h-04A4_S104__bin.6 97.17039801 0.497512438 235 3174041 62.31 21870 SAMN37604607 SRR26215946 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK028-1-L-08h-02I7_S17__bin.1 MortensenS_xxxx__WK028-1-L-08h-02I7_S17__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK028-2-G-48h-04A4_S104__bin.3 99.47643979 0.523560209 33 2418038 40.14 107687 SAMN37604607 SRR26215946 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK028-2-G-48h-04A4_S104__bin.4 98.19004525 0.22624434399999999 240 1852655 46.75 10719 SAMN37604607 SRR26215946 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK028-1-L-48h-02I8_S18__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK028-2-G-48h-04A4_S104__bin.2 94.83146067 0 128 1682226 39.2 22014 SAMN37604607 SRR26215946 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc citreum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK028-2-G-48h-04A4_S104__bin.7 53.7 0.4 2632 6864933 40.04 2673 SAMN37604607 SRR26215946 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_011074885.1_ASM1107488v2_genomic MortensenS_xxxx__WK028-2-G-48h-04A4_S104__bin.7 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Brettanomyces Brettanomyces bruxellensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK028-2-L-08h-02I9_S19__bin.2 100 1.492537313 79 3287959 62.18 62122 SAMN37604608 SRR26215862 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK028-1-L-08h-02I7_S17__bin.1 MortensenS_xxxx__WK028-1-L-08h-02I7_S17__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK028-2-L-08h-02I9_S19__bin.1 99.00497512 0 55 2557127 52.82 71474 SAMN37604608 SRR26215862 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK054-1-L-48h-04E8_S15__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK028-2-L-08h-02I9_S19__bin.4 79.92355151 1.326352531 491 1773538 41.18 4096 SAMN37604608 SRR26215862 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK028-2-L-08h-02I9_S19__bin.6 96.57704655 0 207 1609162 39.43 11438 SAMN37604608 SRR26215862 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc citreum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.1 100 0 99 2721468 52.51 51895 SAMN37604609 SRR26215860 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK054-1-L-48h-04E8_S15__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.2 99.50248756 0.497512438 143 3258647 62.24 41708 SAMN37604609 SRR26215860 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK028-1-L-08h-02I7_S17__bin.1 MortensenS_xxxx__WK028-1-L-08h-02I7_S17__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.3 99.47643979 0.523560209 52 2425677 40.15 76854 SAMN37604609 SRR26215860 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.4 96.83257919 0 128 1926483 46.45 24353 SAMN37604609 SRR26215860 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK028-1-L-48h-02I8_S18__bin.4 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 99.88764045 0 19 1701160 39.07 118161 SAMN37604609 SRR26215860 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc citreum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK029-1-L-08h-03A2_S21__bin.5 87.95811518 0 8 1455835 34.7 447491 SAMN37604610 SRR26215859 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK029-1-L-08h-03A2_S21__bin.3 71.19565217 0 36 1764212 46.46 111301 SAMN37604610 SRR26215859 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.6 100 2.985074627 99 3422800 55.84 72397 SAMN37604611 SRR26215858 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_015244665.1_ASM1524466v1_genomic MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter_A Gluconobacter A japonicus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 99.45652174 0 62 2842450 46.41 88795 SAMN37604611 SRR26215858 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.5 96.51741294 0.248756219 104 2676148 60.68 43122 SAMN37604611 SRR26215858 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.5 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter albidus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.2 99.47643979 0.523560209 75 2364712 34.88 47946 SAMN37604611 SRR26215858 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.3 97.6744186 0.387596899 223 2999131 46.44 20268 SAMN37604611 SRR26215858 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.2 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.3 Bacillota;Bacilli;Bacillales_K;Sporolactobacillaceae;Sporolactobacillus NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.3 88.24479167 1.427083333 542 2708470 40.21 5986 SAMN37604612 SRR26215857 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.2 98.91304348 0 49 2737865 46.5 95485 SAMN37604612 SRR26215857 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 99.47643979 0 27 2315512 34.89 129770 SAMN37604612 SRR26215857 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.5 90.05167959 1.162790698 411 2662649 46.67 8117 SAMN37604612 SRR26215857 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.2 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.3 Bacillota;Bacilli;Bacillales_K;Sporolactobacillaceae;Sporolactobacillus NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK029-2-L-08h-03A4_S23__bin.2 98.91304348 0 75 2784054 46.48 62263 SAMN37604613 SRR26215856 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK029-2-L-08h-03A4_S23__bin.1 96.33507853 0 14 1976908 34.73 204989 SAMN37604613 SRR26215856 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK029-2-L-48h-03A5_S24__bin.6 99.45652174 0 64 2864176 46.4 84375 SAMN37604614 SRR26215855 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK029-2-L-48h-03A5_S24__bin.8 87.95811518 0 18 1458054 34.7 188924 SAMN37604614 SRR26215855 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK029-2-L-48h-03A5_S24__bin.7 87.71329083 0.746268657 530 2508154 59.84 5724 SAMN37604614 SRR26215855 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.6 MortensenS_xxxx__WK029-2-L-48h-03A5_S24__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter papayae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK029-2-L-48h-03A5_S24__bin.3 78.81136951 0.387596899 607 2287785 47.09 4205 SAMN37604614 SRR26215855 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.2 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.3 Bacillota;Bacilli;Bacillales_K;Sporolactobacillaceae;Sporolactobacillus NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-1-L-08h-03A6_S25__bin.10 96.61458333 0.572916667 422 3121090 40.06 10373 SAMN37604615 SRR26215854 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-1-L-08h-03A6_S25__bin.1 94.14678785 1.649595875 419 2636579 46.64 8375 SAMN37604615 SRR26215854 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-1-L-08h-03A6_S25__bin.4 95.52238806 0 57 2131457 59.27 59336 SAMN37604615 SRR26215854 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lovaniensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-1-L-08h-03A6_S25__bin.6 99.47643979 0 74 2402072 36.67 62231 SAMN37604615 SRR26215854 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-1-L-08h-03A6_S25__bin.2 91.429818 1.308900524 323 2866230 53.77 13490 SAMN37604615 SRR26215854 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic MortensenS_xxxx__WK057-1-L-48h-04G2_S27__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-1-L-08h-03A6_S25__bin.3 98.13596491 0 296 2504868 67.4 11192 SAMN37604615 SRR26215854 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-1-L-08h-03A6_S25__bin.8 98 2.2 994 11250328 38.27 17095 SAMN37604615 SRR26215854 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-1-L-48h-03A7_S26__bin.4 97.1875 0.520833333 262 3027690 40.01 17759 SAMN37604616 SRR26215853 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-1-L-48h-03A7_S26__bin.5 98.91304348 0 46 2679425 46.58 89116 SAMN37604616 SRR26215853 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-1-L-48h-03A7_S26__bin.10 95.76871264 0.597014925 278 3111961 60.98 15050 SAMN37604616 SRR26215853 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_275_3_oxydans_assembly MortensenS_xxxx__WK002-2-L-08h-01F7_S31__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter potus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-1-L-48h-03A7_S26__bin.3 94.02985075 0 34 2167956 59 102404 SAMN37604616 SRR26215853 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lovaniensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-1-L-48h-03A7_S26__bin.1 99.47643979 0 93 2280433 36.66 51256 SAMN37604616 SRR26215853 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-1-L-48h-03A7_S26__bin.7 97.3 2.1 1024 11241382 38.29 16702 SAMN37604616 SRR26215853 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-2-G-48h-04A6_S106__bin.1 99.375 0.3125 81 3059004 39.92 50509 SAMN37604617 SRR26215852 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-2-G-48h-04A6_S106__bin.2 82.08849884 1.239295125 648 2480560 46.3 4347 SAMN37604617 SRR26215852 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK030-2-G-48h-04A6_S106__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-2-G-48h-04A6_S106__bin.6 99.47643979 0 34 2341915 36.6 156359 SAMN37604617 SRR26215852 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-2-G-48h-04A6_S106__bin.3 65.84822091 1.642075202 668 2305210 53.63 3828 SAMN37604617 SRR26215852 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic MortensenS_xxxx__WK030-2-G-48h-04A6_S106__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-2-G-48h-04A6_S106__bin.4 98.79385965 0 189 2562793 67.37 18443 SAMN37604617 SRR26215852 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-2-G-48h-04A6_S106__bin.5 97.5 2.1 806 11315670 38.23 21429 SAMN37604617 SRR26215852 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-2-L-08h-03A8_S27__bin.2 99.375 0.625 157 3218639 39.9 33340 SAMN37604618 SRR26215851 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-2-L-08h-03A8_S27__bin.7 95.61766037 1.147025172 326 2792719 46.43 13129 SAMN37604618 SRR26215851 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-2-L-08h-03A8_S27__bin.10 96.26865672 0 111 2419402 58.73 36540 SAMN37604618 SRR26215851 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lovaniensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-2-L-08h-03A8_S27__bin.9 99.47643979 0 32 2155595 36.7 133159 SAMN37604618 SRR26215851 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-2-L-08h-03A8_S27__bin.5 90.35087719 0 438 2391556 67.31 7027 SAMN37604618 SRR26215851 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_408__bin.5 MAG_469 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium Propionibacterium freudenreichii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-2-L-08h-03A8_S27__bin.3 97.8 2.2 779 11294217 38.22 22993 SAMN37604618 SRR26215851 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 100 0 41 2948703 57.84 113923 SAMN37604619 SRR26215849 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lovaniensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.4 94.79166667 0 311 2992364 40.09 14276 SAMN37604619 SRR26215849 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.1 99.45652174 0 67 2806567 46.43 54226 SAMN37604619 SRR26215849 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.5 97.90575916 0.523560209 207 2224956 36.85 15727 SAMN37604619 SRR26215849 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.6 85.17918715 1.824212272 636 2754646 60.97 4986 SAMN37604619 SRR26215849 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_275_3_oxydans_assembly MortensenS_xxxx__WK002-2-L-08h-01F7_S31__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter potus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.3 89.7 2.1 1992 10245150 38.55 6316 SAMN37604619 SRR26215849 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK031-1-L-08h-03B1_S29__bin.4 95.65217391 2.789561697 450 2823990 46.39 8726 SAMN37604620 SRR26215848 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK031-1-L-08h-03B1_S29__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK031-1-L-08h-03B1_S29__bin.1 96.85863874 1.047120419 242 2292814 40.45 13604 SAMN37604620 SRR26215848 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK031-1-L-08h-03B1_S29__bin.3 92.95900178 0.534759358 211 1757795 42.86 11813 SAMN37604620 SRR26215848 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK031-2-L-48h-03B4_S32__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK031-1-L-08h-03B1_S29__bin.7 98.94179894 0 41 1791676 37.67 82060 SAMN37604620 SRR26215848 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK031-1-L-48h-03B2_S30__bin.1 MortensenS_xxxx__WK031-1-L-48h-03B2_S30__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc suionicum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK031-1-L-08h-03B1_S29__bin.5 92.5 1.9 1538 10941836 38.27 9874 SAMN37604620 SRR26215848 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK031-1-L-48h-03B2_S30__bin.3 98.39221014 1.638891 313 2736708 46.58 11731 SAMN37604621 SRR26215847 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK031-1-L-48h-03B2_S30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK031-1-L-48h-03B2_S30__bin.5 97.90575916 2.879581152 248 2438729 40.35 14784 SAMN37604621 SRR26215847 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK031-1-L-48h-03B2_S30__bin.2 93.5828877 0.534759358 58 1618401 43.18 38772 SAMN37604621 SRR26215847 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK031-2-L-48h-03B4_S32__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK031-1-L-48h-03B2_S30__bin.1 100 0 39 2032374 37.38 94362 SAMN37604621 SRR26215847 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK031-1-L-48h-03B2_S30__bin.1 MortensenS_xxxx__WK031-1-L-48h-03B2_S30__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc suionicum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK031-1-L-48h-03B2_S30__bin.4 69.6 1.3 2556 8331612 38.96 3579 SAMN37604621 SRR26215847 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK031-1-L-48h-03B2_S30__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK031-2-G-48h-04A7_S107__bin.1 92.9491161 1.059782609 414 2333391 46.8 7186 SAMN37604622 SRR26215846 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK031-1-L-48h-03B2_S30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK031-2-G-48h-04A7_S107__bin.2 98.95287958 0.523560209 40 2408935 40.18 102293 SAMN37604622 SRR26215846 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK031-2-G-48h-04A7_S107__bin.6 63.94674177 0 473 1397476 38.01 2984 SAMN37604622 SRR26215846 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK031-2-L-08h-03B3_S31__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK031-2-G-48h-04A7_S107__bin.3 92.78074866 0.534759358 129 1723231 42.99 22291 SAMN37604622 SRR26215846 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK031-2-L-48h-03B4_S32__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK031-2-G-48h-04A7_S107__bin.4 89.4 2 2047 10474708 38.49 6339 SAMN37604622 SRR26215846 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK031-2-L-08h-03B3_S31__bin.6 93.82069828 2.137681159 468 2329475 46.82 5700 SAMN37604623 SRR26215845 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK031-1-L-48h-03B2_S30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK031-2-L-08h-03B3_S31__bin.5 97.64397906 0.523560209 187 2225345 40.6 19636 SAMN37604623 SRR26215845 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK031-2-L-08h-03B3_S31__bin.4 86.91660434 3.35078534 551 2042281 37.47 4369 SAMN37604623 SRR26215845 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK031-2-L-08h-03B3_S31__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK031-2-L-08h-03B3_S31__bin.1 91.22103387 1.381461676 260 1541231 43.25 7933 SAMN37604623 SRR26215845 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK031-2-L-48h-03B4_S32__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK031-2-L-08h-03B3_S31__bin.2 100 0.330687831 83 1834405 37.53 40290 SAMN37604623 SRR26215845 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK031-1-L-48h-03B2_S30__bin.1 MortensenS_xxxx__WK031-1-L-48h-03B2_S30__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc suionicum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK031-2-L-08h-03B3_S31__bin.3 91.1 2.2 1864 10677716 38.37 7316 SAMN37604623 SRR26215845 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK031-2-L-48h-03B4_S32__bin.9 97.73690078 2.66900267 305 2662572 46.65 12705 SAMN37604624 SRR26215844 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK031-1-L-48h-03B2_S30__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK031-2-L-48h-03B4_S32__bin.5 96.7539267 2.966841187 250 2283732 40.57 13533 SAMN37604624 SRR26215844 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK031-2-L-48h-03B4_S32__bin.2 96.96969697 0.534759358 92 1667400 43.12 28702 SAMN37604624 SRR26215844 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK031-2-L-48h-03B4_S32__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK031-2-L-48h-03B4_S32__bin.1 99.51899952 0.899470899 124 2006114 37.35 28949 SAMN37604624 SRR26215844 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK031-1-L-48h-03B2_S30__bin.1 MortensenS_xxxx__WK031-1-L-48h-03B2_S30__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc suionicum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK031-2-L-48h-03B4_S32__bin.8 78.7 1.5 2504 9277108 38.67 4223 SAMN37604624 SRR26215844 Spain PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK031-2-L-48h-03B4_S32__bin.8 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK032-1-L-08h-03B5_S33__bin.4 93.3050776 1.71181928 494 2669999 46.32 6989 SAMN37604625 SRR26215843 Indonesia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK032-1-L-08h-03B5_S33__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK032-1-L-08h-03B5_S33__bin.1 98.95287958 0.523560209 93 2506488 40.09 52652 SAMN37604625 SRR26215843 Indonesia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK032-1-L-08h-03B5_S33__bin.3 89.3 2 2131 10191426 38.58 5904 SAMN37604625 SRR26215843 Indonesia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK032-1-L-48h-03B6_S34__bin.2 99.50248756 0 126 2623878 53.06 32881 SAMN37604626 SRR26215842 Indonesia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK032-1-L-48h-03B6_S34__bin.2 MortensenS_xxxx__WK032-1-L-48h-03B6_S34__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter pasteurianus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK032-1-L-48h-03B6_S34__bin.5 95.29187203 3.333333333 504 2714450 46.42 7118 SAMN37604626 SRR26215842 Indonesia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK032-1-L-08h-03B5_S33__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK032-1-L-48h-03B6_S34__bin.6 99.47643979 0.523560209 91 2466007 40.16 42915 SAMN37604626 SRR26215842 Indonesia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK032-1-L-48h-03B6_S34__bin.7 71.41058183 1.474639443 367 1288624 43.31 3824 SAMN37604626 SRR26215842 Indonesia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK032-1-L-48h-03B6_S34__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK032-1-L-48h-03B6_S34__bin.4 75.2 1.7 2515 8884860 38.83 3983 SAMN37604626 SRR26215842 Indonesia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK032-1-L-48h-03B6_S34__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK032-2-G-48h-04A8_S108__bin.4 93.3277592 3.337862319 448 2825723 46.27 7898 SAMN37604627 SRR26215841 Indonesia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK032-1-L-08h-03B5_S33__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK032-2-G-48h-04A8_S108__bin.3 57.45535714 2.552083333 633 1629717 40.84 2624 SAMN37604627 SRR26215841 Indonesia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 MortensenS_xxxx__WK032-2-G-48h-04A8_S108__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK032-2-G-48h-04A8_S108__bin.1 98.7434555 1.657940663 314 2461661 40 10521 SAMN37604627 SRR26215841 Indonesia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK032-2-G-48h-04A8_S108__bin.2 90.3 1.8 1949 10538661 38.49 6699 SAMN37604627 SRR26215841 Indonesia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK032-2-L-08h-03B7_S35__bin.2 94.42338863 2.37829803 464 2655185 46.45 7595 SAMN37604628 SRR26215840 Indonesia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK032-1-L-08h-03B5_S33__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK032-2-L-08h-03B7_S35__bin.3 97.90575916 0.785340314 97 2514720 40.03 44694 SAMN37604628 SRR26215840 Indonesia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK032-2-L-08h-03B7_S35__bin.1 78.2 1.7 2545 9208378 38.85 4096 SAMN37604628 SRR26215840 Indonesia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK044-1-L-48h-03G9_S82__bin.5 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK032-2-L-48h-03B8_S36__bin.1 94.50181159 2.917711817 473 2766680 46.41 7738 SAMN37604629 SRR26215838 Indonesia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK032-1-L-08h-03B5_S33__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK032-2-L-48h-03B8_S36__bin.6 54.1986484 2.375798804 364 927735 40.32 2619 SAMN37604629 SRR26215838 Indonesia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MortensenS_xxxx__WK032-2-L-48h-03B8_S36__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK032-2-L-48h-03B8_S36__bin.3 98.50746269 0.870646766 113 2479945 58.7 28613 SAMN37604629 SRR26215838 Indonesia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_15 MortensenS_xxxx__WK032-2-L-48h-03B8_S36__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK032-2-L-48h-03B8_S36__bin.8 97.74648264 2.404643449 323 2559925 53.34 10882 SAMN37604629 SRR26215838 Indonesia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK032-1-L-48h-03B6_S34__bin.2 MortensenS_xxxx__WK032-1-L-48h-03B6_S34__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter pasteurianus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK032-2-L-48h-03B8_S36__bin.4 99.47643979 0.523560209 117 2462500 40.09 38740 SAMN37604629 SRR26215838 Indonesia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK032-2-L-48h-03B8_S36__bin.7 65.6 1.2 2598 8049710 39.1 3392 SAMN37604629 SRR26215838 Indonesia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK032-2-L-48h-03B8_S36__bin.7 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-1-L-08h-03B9_S37__bin.6 94.63383838 4.21969697 163 2328607 52.15 22191 SAMN37604630 SRR26215837 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-1-L-08h-03B9_S37__bin.11 91.88712522 0 321 1807278 39.62 7497 SAMN37604630 SRR26215837 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK053-1-L-48h-04E4_S11__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-1-L-08h-03B9_S37__bin.7 99.47643979 0.523560209 78 2366862 40.34 47778 SAMN37604630 SRR26215837 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-1-L-08h-03B9_S37__bin.12 99.47643979 0 83 2514850 36.52 82160 SAMN37604630 SRR26215837 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK033-1-L-08h-03B9_S37__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-1-L-08h-03B9_S37__bin.8 90.42856952 1.956882255 426 2125329 56.62 5894 SAMN37604630 SRR26215837 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK026-1-L-48h-02H9_S10__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-1-L-08h-03B9_S37__bin.3 73.91304348 0.543478261 76 1971014 46.54 40722 SAMN37604630 SRR26215837 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-1-L-08h-03B9_S37__bin.1 79.29594452 2.23880597 509 1948747 53.45 4460 SAMN37604630 SRR26215837 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK022-1-L-48h-02F8_S113__bin.13 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-1-L-08h-03B9_S37__bin.2 81 1.7 2867 10405542 38.48 4168 SAMN37604630 SRR26215837 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-1-L-48h-03C1_S38__bin.14 98.70646766 0 120 2534080 53.04 34161 SAMN37604631 SRR26215836 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK022-1-L-48h-02F8_S113__bin.13 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-1-L-48h-03C1_S38__bin.2 98.36956522 0 133 2902745 46.4 38310 SAMN37604631 SRR26215836 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-1-L-48h-03C1_S38__bin.10 96.91358025 0.176366843 312 1964929 39.51 8775 SAMN37604631 SRR26215836 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK053-1-L-48h-04E4_S11__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-1-L-48h-03C1_S38__bin.8 96.85863874 0 252 2403598 36.63 15244 SAMN37604631 SRR26215836 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK033-1-L-08h-03B9_S37__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-1-L-48h-03C1_S38__bin.6 92.95759108 3.582089552 74 2270430 56.65 51609 SAMN37604631 SRR26215836 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK026-1-L-48h-02H9_S10__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-1-L-48h-03C1_S38__bin.12 92.039801 0.945273632 135 2957612 59.34 31529 SAMN37604631 SRR26215836 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.6 MortensenS_xxxx__WK033-1-L-48h-03C1_S38__bin.12 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter papayae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-1-L-48h-03C1_S38__bin.3 54.3035373 2.653399668 634 1645494 61.28 2656 SAMN37604631 SRR26215836 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967701__bin.5 MortensenS_xxxx__WK033-1-L-48h-03C1_S38__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter oxydans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-1-L-48h-03C1_S38__bin.5 51.8 1.4 2631 7030668 39.03 2788 SAMN37604631 SRR26215836 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK033-1-L-48h-03C1_S38__bin.5 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-2-G-48h-04A9_S109__bin.7 98.59375 0.4375 212 3113818 40 22688 SAMN37604632 SRR26216087 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-2-G-48h-04A9_S109__bin.3 98.91304348 0.362318841 214 2956136 46.44 20619 SAMN37604632 SRR26216087 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-2-G-48h-04A9_S109__bin.5 99.47643979 0.523560209 80 2379727 40.31 51486 SAMN37604632 SRR26216087 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-2-G-48h-04A9_S109__bin.2 98.42931937 0 55 2419655 36.56 103152 SAMN37604632 SRR26216087 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK033-1-L-08h-03B9_S37__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-2-G-48h-04A9_S109__bin.1 96.00987248 0 259 1871235 46.78 9513 SAMN37604632 SRR26216087 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-2-G-48h-04A9_S109__bin.4 98.72474747 3.333333333 39 2431326 56.04 110125 SAMN37604632 SRR26216087 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 MortensenS_xxxx__WK033-2-L-08h-03C2_S39__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080835 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-2-L-08h-03C2_S39__bin.3 98.36956522 0 96 2755562 46.51 48079 SAMN37604633 SRR26216085 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-2-L-08h-03C2_S39__bin.8 93.53535354 4.484848485 144 2293828 52.15 27117 SAMN37604633 SRR26216085 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-2-L-08h-03C2_S39__bin.1 97.00176367 0.176366843 260 1973737 39.42 10707 SAMN37604633 SRR26216085 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK053-1-L-48h-04E4_S11__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-2-L-08h-03C2_S39__bin.7 97.90575916 0.523560209 95 2331063 40.34 39728 SAMN37604633 SRR26216085 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-2-L-08h-03C2_S39__bin.9 96.02740817 0.746268657 250 2218918 56.84 12096 SAMN37604633 SRR26216085 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK026-1-L-48h-02H9_S10__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-2-L-08h-03C2_S39__bin.2 99.47643979 0 80 2424844 36.61 62287 SAMN37604633 SRR26216085 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK033-1-L-08h-03B9_S37__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-2-L-08h-03C2_S39__bin.5 98.85057471 3.29153605 78 2349961 56.15 47774 SAMN37604633 SRR26216085 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 MortensenS_xxxx__WK033-2-L-08h-03C2_S39__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080835 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-2-L-08h-03C2_S39__bin.4 84 2 2352 9698624 38.66 4847 SAMN37604633 SRR26216085 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-2-L-48h-03C3_S40__bin.10 98.36956522 0 127 2889835 46.35 40048 SAMN37604634 SRR26216084 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-2-L-48h-03C3_S40__bin.11 98.7654321 0.176366843 256 2046595 39.27 11713 SAMN37604634 SRR26216084 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK053-1-L-48h-04E4_S11__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-2-L-48h-03C3_S40__bin.6 96.71641791 0 163 2640607 52.79 25818 SAMN37604634 SRR26216084 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK022-1-L-48h-02F8_S113__bin.13 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-2-L-48h-03C3_S40__bin.2 97.38219895 0.523560209 91 1927789 40.76 28786 SAMN37604634 SRR26216084 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-2-L-48h-03C3_S40__bin.8 95.88047665 0.597014925 79 2346223 56.44 54156 SAMN37604634 SRR26216084 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK026-1-L-48h-02H9_S10__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-2-L-48h-03C3_S40__bin.4 98.56020942 1.570680628 350 2853780 36.94 12115 SAMN37604634 SRR26216084 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK033-1-L-08h-03B9_S37__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-2-L-48h-03C3_S40__bin.13 99.54751131 0 167 1984072 46.5 18896 SAMN37604634 SRR26216084 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-2-L-48h-03C3_S40__bin.3 86.7816092 4.963427377 212 2122076 56.47 16564 SAMN37604634 SRR26216084 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 MortensenS_xxxx__WK033-2-L-08h-03C2_S39__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080835 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK033-2-L-48h-03C3_S40__bin.14 84.82587065 1.990049751 120 2147616 60.04 26673 SAMN37604634 SRR26216084 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.6 MortensenS_xxxx__WK033-1-L-48h-03C1_S38__bin.12 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter papayae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK034-1-L-08h-03C4_S41__bin.8 90.48913043 0 97 2654324 46.44 40820 SAMN37604635 SRR26216083 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK034-1-L-08h-03C4_S41__bin.5 97.38219895 4.869109948 433 2927738 36.39 9228 SAMN37604635 SRR26216083 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus sp030400225 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK034-1-L-08h-03C4_S41__bin.1 98.7654321 0 66 1792125 39.46 37344 SAMN37604635 SRR26216083 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK034-1-L-08h-03C4_S41__bin.4 96.43979058 1.570680628 194 2183545 40.58 17545 SAMN37604635 SRR26216083 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK034-1-L-08h-03C4_S41__bin.6 87.43455497 0.714969318 513 1882551 37.69 4243 SAMN37604635 SRR26216083 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK034-1-L-08h-03C4_S41__bin.7 74.70294387 0.692114094 593 1958608 51.55 3664 SAMN37604635 SRR26216083 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK034-1-L-08h-03C4_S41__bin.7 MortensenS_xxxx__WK034-1-L-08h-03C4_S41__bin.7 Bacillota;Clostridia;Oscillospirales;Ethanoligenentaceae;Ethanoligenens NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK034-1-L-48h-03C5_S42__bin.5 97.82608696 1.086956522 133 2769358 46.4 38699 SAMN37604636 SRR26216082 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK034-1-L-48h-03C5_S42__bin.1 99.82363316 0 79 1956925 39.13 37418 SAMN37604636 SRR26216082 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK034-1-L-48h-03C5_S42__bin.6 99.47643979 1.047120419 122 2452798 40.19 29980 SAMN37604636 SRR26216082 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK034-1-L-48h-03C5_S42__bin.9 75.3897971 2.466832504 637 1945725 58.29 3303 SAMN37604636 SRR26216082 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 MortensenS_xxxx__WK034-1-L-48h-03C5_S42__bin.9 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lovaniensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK034-1-L-48h-03C5_S42__bin.4 62.4 0.8 3121 9131691 40.13 3090 SAMN37604636 SRR26216082 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_011074885.1_ASM1107488v2_genomic MortensenS_xxxx__WK034-1-L-48h-03C5_S42__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Brettanomyces Brettanomyces bruxellensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK034-2-G-48h-04B1_S110__bin.9 77.59412202 0.792410714 588 2427035 40.62 4816 SAMN37604637 SRR26216081 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK034-2-G-48h-04B1_S110__bin.7 97.2826087 0.27173913 97 2697555 46.6 47184 SAMN37604637 SRR26216081 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK034-2-G-48h-04B1_S110__bin.4 97.17813051 0 145 1739372 39.54 16695 SAMN37604637 SRR26216081 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK034-2-G-48h-04B1_S110__bin.5 99.47643979 1.570680628 93 2455594 40.14 41670 SAMN37604637 SRR26216081 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK034-2-G-48h-04B1_S110__bin.6 100 0 100 2044108 46.26 33185 SAMN37604637 SRR26216081 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK034-2-G-48h-04B1_S110__bin.6 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK034-2-G-48h-04B1_S110__bin.3 83.2 1.8 2961 12093804 38.25 4808 SAMN37604637 SRR26216081 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK034-2-L-08h-03C6_S43__bin.1 96.73913043 0 91 2676140 46.65 48412 SAMN37604638 SRR26216080 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK034-2-L-08h-03C6_S43__bin.4 95.81151832 2.094240838 448 2273608 36.49 6623 SAMN37604638 SRR26216080 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus sp030400225 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK034-2-L-08h-03C6_S43__bin.9 68.42105263 0 17 1175448 39.26 141671 SAMN37604638 SRR26216080 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK034-2-L-08h-03C6_S43__bin.5 99.47643979 1.047120419 133 2382770 40.29 27926 SAMN37604638 SRR26216080 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK034-2-L-08h-03C6_S43__bin.11 79.05883819 1.282722513 470 1664913 37.75 4031 SAMN37604638 SRR26216080 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK034-2-L-08h-03C6_S43__bin.10 82.9206088 1.447963801 375 1608411 47.03 5077 SAMN37604638 SRR26216080 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK034-2-G-48h-04B1_S110__bin.6 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK034-2-L-08h-03C6_S43__bin.8 54.28551454 1.006711409 331 906248 53.58 2852 SAMN37604638 SRR26216080 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK034-1-L-08h-03C4_S41__bin.7 MortensenS_xxxx__WK034-2-L-08h-03C6_S43__bin.8 Bacillota;Clostridia;Oscillospirales;Ethanoligenentaceae;Ethanoligenens NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK034-2-L-48h-03C7_S44__bin.2 98.64130435 0.543478261 111 2737824 46.55 46001 SAMN37604639 SRR26216078 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK034-2-L-48h-03C7_S44__bin.5 98.23633157 0 40 1912430 39.15 83475 SAMN37604639 SRR26216078 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK017-2-L-08h-02D4_S91__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK034-2-L-48h-03C7_S44__bin.1 99.47643979 0.523560209 116 2418518 40.3 32335 SAMN37604639 SRR26216078 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK034-2-L-48h-03C7_S44__bin.3 99.54751131 0 131 1943723 46.51 21100 SAMN37604639 SRR26216078 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK034-2-G-48h-04B1_S110__bin.6 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK034-2-L-48h-03C7_S44__bin.6 88.43848937 1.343283582 472 2437455 58.49 6641 SAMN37604639 SRR26216078 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lovaniensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK035-1-L-08h-03C8_S45__bin.1 64.57566153 0 548 2259569 61.29 4629 SAMN37604640 SRR26216077 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967701__bin.5 LeechJ_2020__ERS3967701__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter oxydans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK035-1-L-08h-03C8_S45__bin.2 97.2 0.1 630 9607547 42.34 23608 SAMN37604640 SRR26216077 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-08h-03F3_S67__bin.4 MortensenS_xxxx__WK040-2-L-08h-03F3_S67__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Lachancea Lachancea fermentati tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK035-1-L-08h-03C8_S45__bin.5 95.2 2.3 1299 10891287 38.3 11910 SAMN37604640 SRR26216077 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK035-1-L-48h-03C9_S46__bin.2 100 0 42 2974383 61.09 124580 SAMN37604641 SRR26216076 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967701__bin.5 LeechJ_2020__ERS3967701__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter oxydans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK035-1-L-48h-03C9_S46__bin.4 94.2 1.2 663 9090993 42.4 20519 SAMN37604641 SRR26216076 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-08h-03F3_S67__bin.4 MortensenS_xxxx__WK040-2-L-08h-03F3_S67__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Lachancea Lachancea fermentati tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK035-1-L-48h-03C9_S46__bin.5 90.9 3.6 1869 10731225 38.39 7211 SAMN37604641 SRR26216076 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK035-2-G-48h-04B2_S111__bin.2 98.4496124 0.387596899 36 2797035 49.82 128531 SAMN37604642 SRR26216075 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK035-2-G-48h-04B2_S111__bin.2 MortensenS_xxxx__WK035-2-G-48h-04B2_S111__bin.2 Bacillota;Bacilli;Bacillales_K;Sporolactobacillaceae;Sporolactobacillus NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK035-2-G-48h-04B2_S111__bin.3 96.6 2.1 1014 11143741 38.25 16424 SAMN37604642 SRR26216075 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK035-2-L-08h-03D1_S47__bin.1 68.96551724 0 14 1251279 61.55 141136 SAMN37604643 SRR26216074 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967701__bin.5 LeechJ_2020__ERS3967701__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter oxydans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK035-2-L-08h-03D1_S47__bin.6 76.49870801 1.937984496 479 1894710 50.73 4433 SAMN37604643 SRR26216074 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK035-2-G-48h-04B2_S111__bin.2 MortensenS_xxxx__WK035-2-G-48h-04B2_S111__bin.2 Bacillota;Bacilli;Bacillales_K;Sporolactobacillaceae;Sporolactobacillus NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK035-2-L-08h-03D1_S47__bin.7 90 3.2 1927 10682942 38.44 7266 SAMN37604643 SRR26216074 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK035-2-L-08h-03D1_S47__bin.8 94.4 1.1 725 9244289 42.5 18804 SAMN37604643 SRR26216074 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-08h-03F3_S67__bin.4 MortensenS_xxxx__WK040-2-L-08h-03F3_S67__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Lachancea Lachancea fermentati tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK035-2-L-48h-03D2_S48__bin.6 61.87509423 0.995024876 543 1942339 61.39 3854 SAMN37604644 SRR26216073 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967701__bin.5 MortensenS_xxxx__WK035-2-L-48h-03D2_S48__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter oxydans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK035-2-L-48h-03D2_S48__bin.3 83.57881137 0.775193798 438 2290145 50.57 6477 SAMN37604644 SRR26216073 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK035-2-G-48h-04B2_S111__bin.2 MortensenS_xxxx__WK035-2-G-48h-04B2_S111__bin.2 Bacillota;Bacilli;Bacillales_K;Sporolactobacillaceae;Sporolactobacillus NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK035-2-L-48h-03D2_S48__bin.1 96.4 0.1 723 9521703 42.33 20161 SAMN37604644 SRR26216073 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-08h-03F3_S67__bin.4 MortensenS_xxxx__WK040-2-L-08h-03F3_S67__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Lachancea Lachancea fermentati tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK035-2-L-48h-03D2_S48__bin.2 95.4 2.3 1354 10849353 38.31 11199 SAMN37604644 SRR26216073 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK036-1-L-08h-03D3_S49__bin.1 96.24784334 2.598048563 427 2726158 46.54 8702 SAMN37604645 SRR26216072 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK036-1-L-08h-03D3_S49__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK036-1-L-08h-03D3_S49__bin.2 98.42931937 2.748691099 115 2258994 36.4 28227 SAMN37604645 SRR26216072 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.7 MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus mali A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK036-1-L-08h-03D3_S49__bin.8 87.56218905 0 55 2220593 52.87 66214 SAMN37604645 SRR26216072 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK036-1-L-48h-03D4_S50__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK036-1-L-08h-03D3_S49__bin.3 88.2 1.7 2263 10224354 38.57 5368 SAMN37604645 SRR26216072 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK036-1-L-48h-03D4_S50__bin.7 100 0 53 2727865 52.6 80821 SAMN37604646 SRR26216071 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK036-1-L-48h-03D4_S50__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK036-1-L-48h-03D4_S50__bin.8 92.96950483 2.93272898 395 2376531 46.71 7546 SAMN37604646 SRR26216071 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK036-1-L-48h-03D4_S50__bin.1 98.95287958 0.130890052 228 2236479 36.56 15821 SAMN37604646 SRR26216071 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.7 MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus mali A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK036-1-L-48h-03D4_S50__bin.5 93.63636364 3.846894559 498 4002565 57.46 11746 SAMN37604646 SRR26216071 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-1-L-48h-03F2_S66__bin.3 MortensenS_xxxx__WK040-1-L-48h-03F2_S66__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter aceti B tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK036-1-L-48h-03D4_S50__bin.2 62.08564339 1.243781095 659 2168057 62.04 3611 SAMN37604646 SRR26216071 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.2 MortensenS_xxxx__WK036-1-L-48h-03D4_S50__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter saccharivorans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK036-1-L-48h-03D4_S50__bin.10 73.5 1.6 2610 8666010 38.91 3702 SAMN37604646 SRR26216071 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK036-1-L-48h-03D4_S50__bin.10 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK036-2-G-48h-04B3_S112__bin.3 95 0.3125 105 2935581 40.06 49352 SAMN37604647 SRR26216070 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK036-2-G-48h-04B3_S112__bin.4 96.15942029 2.83479202 408 2858632 46.35 9518 SAMN37604647 SRR26216070 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK001T-2-L-04h-05E3_S91__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK036-2-G-48h-04B3_S112__bin.2 98.95287958 0.523560209 233 2360151 40.4 15607 SAMN37604647 SRR26216070 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK036-2-L-08h-03D5_S51__bin.4 98.95522388 0 71 2593580 52.89 58058 SAMN37604648 SRR26216069 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK036-1-L-48h-03D4_S50__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK036-2-L-08h-03D5_S51__bin.3 96.12458194 4.271480331 440 2924701 46.42 8808 SAMN37604648 SRR26216069 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK020-2-L-48h-02E8_S104__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK036-2-L-08h-03D5_S51__bin.5 97.38219895 0.130890052 141 2241005 36.33 24923 SAMN37604648 SRR26216069 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.7 MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus mali A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK036-2-L-08h-03D5_S51__bin.7 53.16091954 1.724137931 461 1271497 41.25 2803 SAMN37604648 SRR26216069 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic MortensenS_xxxx__WK036-2-L-08h-03D5_S51__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK036-2-L-08h-03D5_S51__bin.1 85 1.8 2369 9905849 38.64 4958 SAMN37604648 SRR26216069 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.8 100 0 46 2667318 52.76 80350 SAMN37604649 SRR26216067 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK036-1-L-48h-03D4_S50__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.2 95.91276477 1.304347826 406 2713288 46.46 9162 SAMN37604649 SRR26216067 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.7 98.95287958 0 203 2238499 36.52 17516 SAMN37604649 SRR26216067 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.7 MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus mali A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.5 78.7 1.5 2545 9305517 38.73 4152 SAMN37604649 SRR26216067 United Kingdom PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.5 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK037-1-L-08h-03D7_S53__bin.3 95.7622631 2.217796267 377 2497835 46.79 9417 SAMN37604650 SRR26216066 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK037-2-L-48h-03E1_S56__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK037-1-L-08h-03D7_S53__bin.5 78.66492147 0.523560209 160 1631810 36.59 17749 SAMN37604650 SRR26216066 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 LeechJ_2020__ERS3967724__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK037-1-L-48h-03D8_S54__bin.6 96.96557971 1.838768116 242 2615660 46.75 17289 SAMN37604651 SRR26216065 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK037-2-L-48h-03E1_S56__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK037-1-L-48h-03D8_S54__bin.9 98.95287958 1.047120419 95 2424867 40.27 55397 SAMN37604651 SRR26216065 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK037-1-L-48h-03D8_S54__bin.1 98.95287958 1.701570681 155 2463499 36.68 26127 SAMN37604651 SRR26216065 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 LeechJ_2020__ERS3967724__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK037-1-L-48h-03D8_S54__bin.3 56.44012343 1.523631841 928 2830223 63.83 3192 SAMN37604651 SRR26216065 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK037-1-L-48h-03D8_S54__bin.3 MortensenS_xxxx__WK037-1-L-48h-03D8_S54__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconacetobacter Gluconacetobacter liquefaciens tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK037-2-G-48h-04B4_S113__bin.6 97.82608696 1.168478261 205 2631774 46.73 19231 SAMN37604652 SRR26216064 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK037-2-L-48h-03E1_S56__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK037-2-G-48h-04B4_S113__bin.3 99.47643979 1.047120419 86 2372677 40.25 49102 SAMN37604652 SRR26216064 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK037-2-G-48h-04B4_S113__bin.2 99.47643979 1.178010471 63 2452525 36.62 80651 SAMN37604652 SRR26216064 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 LeechJ_2020__ERS3967724__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK037-2-G-48h-04B4_S113__bin.7 89.7958153 1.78030303 470 2260610 58.74 6167 SAMN37604652 SRR26216064 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK037-2-L-08h-03D9_S55__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK037-2-G-48h-04B4_S113__bin.1 81.8 0.2 2372 10376472 40 5266 SAMN37604652 SRR26216064 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_011074885.1_ASM1107488v2_genomic MortensenS_xxxx__WK037-2-G-48h-04B4_S113__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Brettanomyces Brettanomyces bruxellensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK037-2-L-08h-03D9_S55__bin.3 96.64297659 1.041666667 340 2622427 46.57 10147 SAMN37604653 SRR26216063 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK037-2-L-48h-03E1_S56__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK037-2-L-08h-03D9_S55__bin.5 98.95287958 1.047120419 82 2309874 40.35 49100 SAMN37604653 SRR26216063 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK037-2-L-08h-03D9_S55__bin.2 99.47643979 1.701570681 100 2490204 36.68 47559 SAMN37604653 SRR26216063 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 LeechJ_2020__ERS3967724__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK037-2-L-08h-03D9_S55__bin.4 98.28282828 1.174242424 138 2508972 58.83 26751 SAMN37604653 SRR26216063 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK037-2-L-08h-03D9_S55__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK037-2-L-48h-03E1_S56__bin.3 98.13405797 0.543478261 151 2584799 46.68 25433 SAMN37604654 SRR26216062 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK037-2-L-48h-03E1_S56__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK037-2-L-48h-03E1_S56__bin.2 95.94240838 1.047120419 77 2323654 36.59 59155 SAMN37604654 SRR26216062 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 LeechJ_2020__ERS3967724__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK037-2-L-48h-03E1_S56__bin.4 98.40909091 1.666666667 85 2522070 58.87 46745 SAMN37604654 SRR26216062 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK037-2-L-08h-03D9_S55__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK038-1-L-08h-03E2_S57__bin.1 95.7 2 1042 11109292 38.25 16547 SAMN37604655 SRR26216061 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK038-1-L-48h-03E3_S58__bin.2 99.50248756 0 84 3237699 55.68 93846 SAMN37604656 SRR26216060 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK038-2-L-48h-03E5_S60__bin.2 MortensenS_xxxx__WK038-2-L-48h-03E5_S60__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter_A Gluconobacter A cerinus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK038-1-L-48h-03E3_S58__bin.3 96.00017386 0.373134328 112 3091831 60.69 54497 SAMN37604656 SRR26216060 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK038-1-L-48h-03E3_S58__bin.3 MortensenS_xxxx__WK038-1-L-48h-03E3_S58__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK038-1-L-48h-03E3_S58__bin.1 69 0.1 1866 8401849 44.32 5308 SAMN37604656 SRR26216060 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK038-1-L-48h-03E3_S58__bin.1 MortensenS_xxxx__WK038-1-L-48h-03E3_S58__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia membranifaciens group 1 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK038-1-L-48h-03E3_S58__bin.7 94.4 2.2 1578 10771855 38.38 9198 SAMN37604656 SRR26216060 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK038-2-G-48h-04B5_S114__bin.3 96.72002889 1.592039801 334 3105074 60.62 15145 SAMN37604657 SRR26216059 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK038-1-L-48h-03E3_S58__bin.3 MortensenS_xxxx__WK038-1-L-48h-03E3_S58__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK038-2-G-48h-04B5_S114__bin.2 97.8 2.1 727 11260105 38.24 23481 SAMN37604657 SRR26216059 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK038-2-L-08h-03E4_S59__bin.3 97.2 2.2 915 11254125 38.25 20189 SAMN37604658 SRR26215947 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK038-2-L-48h-03E5_S60__bin.2 99.50248756 0 40 2674988 56.18 136292 SAMN37604659 SRR26215943 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK038-2-L-48h-03E5_S60__bin.2 MortensenS_xxxx__WK038-2-L-48h-03E5_S60__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter_A Gluconobacter A cerinus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK038-2-L-48h-03E5_S60__bin.8 97.88557214 1.705518108 106 3120419 60.59 64435 SAMN37604659 SRR26215943 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK038-1-L-48h-03E3_S58__bin.3 MortensenS_xxxx__WK038-1-L-48h-03E3_S58__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK038-2-L-48h-03E5_S60__bin.6 51.8 0 2074 6778474 43.99 3538 SAMN37604659 SRR26215943 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK038-1-L-48h-03E3_S58__bin.1 MortensenS_xxxx__WK038-2-L-48h-03E5_S60__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia membranifaciens group 1 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK038-2-L-48h-03E5_S60__bin.7 91 2.1 1976 10408711 38.45 6563 SAMN37604659 SRR26215943 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK039-1-L-08h-03E6_S61__bin.4 98.00995025 0 60 2288155 56.44 58005 SAMN37604660 SRR26215942 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK039-1-L-08h-03E6_S61__bin.5 78.0104712 0.523560209 18 1519971 37.39 89942 SAMN37604660 SRR26215942 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 MortensenS_xxxx__WK039-2-L-48h-03E9_S64__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus ghanensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK039-1-L-08h-03E6_S61__bin.1 64.4 1.1 2611 7750742 39.2 3175 SAMN37604660 SRR26215942 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK039-1-L-08h-03E6_S61__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK039-1-L-48h-03E7_S62__bin.9 99.50248756 0 114 2565022 53.07 34447 SAMN37604661 SRR26215941 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK046-2-L-48h-03I1_S92__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK039-1-L-48h-03E7_S62__bin.6 96.0199005 0 40 2089357 56.86 89444 SAMN37604661 SRR26215941 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK039-1-L-48h-03E7_S62__bin.10 99.47643979 1.047120419 137 2549207 37.11 39144 SAMN37604661 SRR26215941 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 MortensenS_xxxx__WK039-2-L-48h-03E9_S64__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus ghanensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK039-1-L-48h-03E7_S62__bin.8 75.05747126 0 314 2319367 59.03 11128 SAMN37604661 SRR26215941 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_15 MortensenS_xxxx__WK039-2-L-48h-03E9_S64__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK039-1-L-48h-03E7_S62__bin.3 73.47749887 0.708578321 704 2500456 61.79 3945 SAMN37604661 SRR26215941 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.2 LeechJ_2020__ERS3967738__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Komagataeibacter Komagataeibacter saccharivorans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK039-2-G-48h-04B6_S115__bin.3 91.53577661 0.523560209 413 2203867 40.47 6931 SAMN37604662 SRR26215940 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK039-2-G-48h-04B6_S115__bin.1 99.47643979 1.047120419 27 2568630 37.02 146462 SAMN37604662 SRR26215940 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 MortensenS_xxxx__WK039-2-L-48h-03E9_S64__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus ghanensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK039-2-G-48h-04B6_S115__bin.2 94.5 1.9 1592 10751856 38.44 9150 SAMN37604662 SRR26215940 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK039-2-L-08h-03E8_S63__bin.1 92.14659686 1.047120419 18 1932282 37.1 232846 SAMN37604663 SRR26215939 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 MortensenS_xxxx__WK039-2-L-48h-03E9_S64__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus ghanensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK039-2-L-08h-03E8_S63__bin.3 85.5 2 2371 9812776 38.66 4910 SAMN37604663 SRR26215939 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK039-2-L-48h-03E9_S64__bin.2 99.83416252 0 137 2462960 53.08 29631 SAMN37604664 SRR26215938 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK046-2-L-48h-03I1_S92__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK039-2-L-48h-03E9_S64__bin.6 96.7751966 0.746268657 92 2443548 58.8 45853 SAMN37604664 SRR26215938 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_15 MortensenS_xxxx__WK039-2-L-48h-03E9_S64__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK039-2-L-48h-03E9_S64__bin.9 92.14110897 0.497512438 74 2053247 56.98 49149 SAMN37604664 SRR26215938 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK039-2-L-48h-03E9_S64__bin.11 99.47643979 1.047120419 28 2604638 36.95 232776 SAMN37604664 SRR26215938 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 MortensenS_xxxx__WK039-2-L-48h-03E9_S64__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus ghanensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK039-2-L-48h-03E9_S64__bin.10 81.1 1.7 2462 9437282 38.76 4442 SAMN37604664 SRR26215938 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK040-1-L-08h-03F1_S65__bin.2 100 0 39 2559465 52.77 104243 SAMN37604665 SRR26215937 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK040-1-L-08h-03F1_S65__bin.7 96.41791045 1.492537313 423 4240204 57.35 16012 SAMN37604665 SRR26215937 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-1-L-48h-03F2_S66__bin.3 MortensenS_xxxx__WK040-1-L-48h-03F2_S66__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter aceti B tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK040-1-L-08h-03F1_S65__bin.5 74.13793103 0 307 2131435 56.69 9859 SAMN37604665 SRR26215937 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK040-1-L-08h-03F1_S65__bin.4 98.6 0 401 9879454 42.44 44141 SAMN37604665 SRR26215937 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-08h-03F3_S67__bin.4 MortensenS_xxxx__WK040-2-L-08h-03F3_S67__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Lachancea Lachancea fermentati tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK040-1-L-48h-03F2_S66__bin.3 99.40298507 0 202 3687801 57.52 30307 SAMN37604666 SRR26215936 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-1-L-48h-03F2_S66__bin.3 MortensenS_xxxx__WK040-1-L-48h-03F2_S66__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter aceti B tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK040-1-L-48h-03F2_S66__bin.9 98.00995025 0 79 2269435 56.56 41717 SAMN37604666 SRR26215936 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK040-1-L-48h-03F2_S66__bin.8 98.4 0 518 9730301 42.38 27926 SAMN37604666 SRR26215936 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-08h-03F3_S67__bin.4 MortensenS_xxxx__WK040-2-L-08h-03F3_S67__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Lachancea Lachancea fermentati tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK040-2-G-48h-04B7_S116__bin.1 99 0.2 245 9927894 42.4 63363 SAMN37604667 SRR26215935 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-08h-03F3_S67__bin.4 MortensenS_xxxx__WK040-2-L-08h-03F3_S67__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Lachancea Lachancea fermentati tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK040-2-G-48h-04B7_S116__bin.2 90.7 0.1 1663 11324121 39.99 9123 SAMN37604667 SRR26215935 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0118-001_Brettanomyces_anomalus_YV396 ODFM-BA-A-0118-001_Brettanomyces_anomalus_YV396 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Brettanomyces Brettanomyces anomalus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK040-2-L-08h-03F3_S67__bin.5 90.54726368 0 73 2083426 56.99 48607 SAMN37604668 SRR26215934 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK040-2-L-08h-03F3_S67__bin.7 50 0 62 1621475 53.07 41362 SAMN37604668 SRR26215934 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK040-2-L-08h-03F3_S67__bin.4 99.1 0 247 9941393 42.46 67132 SAMN37604668 SRR26215934 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-08h-03F3_S67__bin.4 MortensenS_xxxx__WK040-2-L-08h-03F3_S67__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Lachancea Lachancea fermentati tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 98.50746269 0 108 2464377 55.82 37759 SAMN37604669 SRR26215932 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.5 55.17241379 0 27 1820704 52.92 104243 SAMN37604669 SRR26215932 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.3 98.6 0 331 9884197 42.4 49763 SAMN37604669 SRR26215932 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-08h-03F3_S67__bin.4 MortensenS_xxxx__WK040-2-L-08h-03F3_S67__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Lachancea Lachancea fermentati tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK041-1-L-08h-03F5_S69__bin.5 96.29917184 0 77 2666038 46.49 51785 SAMN37604670 SRR26215931 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK041-1-L-48h-03F6_S70__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK041-1-L-08h-03F5_S69__bin.9 91.60558464 1.832460733 478 2024861 38.12 4937 SAMN37604670 SRR26215931 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 MortensenS_xxxx__WK039-2-L-48h-03E9_S64__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus ghanensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK041-1-L-08h-03F5_S69__bin.11 92.94117647 0 257 1555358 38.36 8600 SAMN37604670 SRR26215931 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_020510245.1_ASM2051024v1_genomic MortensenS_xxxx__WK046-2-L-08h-03H9_S91__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus oeni tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK041-1-L-08h-03F5_S69__bin.6 81.5530303 1.060606061 9 1546744 53.6 247863 SAMN37604670 SRR26215931 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK041-2-G-48h-04B8_S117__bin.4 MortensenS_xxxx__WK041-2-G-48h-04B8_S117__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080795 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK041-1-L-08h-03F5_S69__bin.4 89.2 2.1 2089 10492836 38.45 6371 SAMN37604670 SRR26215931 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK041-1-L-48h-03F6_S70__bin.3 99.45652174 0 98 2765500 46.45 49489 SAMN37604671 SRR26215930 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK041-1-L-48h-03F6_S70__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK041-1-L-48h-03F6_S70__bin.1 56.12852665 4.702194357 477 1338021 41.22 2929 SAMN37604671 SRR26215930 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic MortensenS_xxxx__WK041-1-L-48h-03F6_S70__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK041-1-L-48h-03F6_S70__bin.9 87.27325615 4.228855721 480 2172495 53.18 5518 SAMN37604671 SRR26215930 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK041-1-L-48h-03F6_S70__bin.5 97.59358289 0.55258467 271 1700433 38.27 9291 SAMN37604671 SRR26215930 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_020510245.1_ASM2051024v1_genomic MortensenS_xxxx__WK046-2-L-08h-03H9_S91__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus oeni tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK041-1-L-48h-03F6_S70__bin.2 98.77525253 3.333333333 15 2184959 53.66 304793 SAMN37604671 SRR26215930 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK041-2-G-48h-04B8_S117__bin.4 MortensenS_xxxx__WK041-2-G-48h-04B8_S117__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080795 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK041-2-G-48h-04B8_S117__bin.2 97.91666667 0.054347826 164 2710287 46.55 25801 SAMN37604672 SRR26215929 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK041-1-L-48h-03F6_S70__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK041-2-G-48h-04B8_S117__bin.7 90.33096485 1.047120419 452 2084157 40.67 5794 SAMN37604672 SRR26215929 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK041-2-G-48h-04B8_S117__bin.8 99.47643979 1.047120419 108 2508060 37.22 38144 SAMN37604672 SRR26215929 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 MortensenS_xxxx__WK039-2-L-48h-03E9_S64__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus ghanensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK041-2-G-48h-04B8_S117__bin.6 97.59358289 0.534759358 194 1786457 37.85 14998 SAMN37604672 SRR26215929 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_020510245.1_ASM2051024v1_genomic MortensenS_xxxx__WK046-2-L-08h-03H9_S91__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus oeni tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK041-2-G-48h-04B8_S117__bin.4 98.77525253 2.424242424 19 2210205 53.79 229442 SAMN37604672 SRR26215929 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK041-2-G-48h-04B8_S117__bin.4 MortensenS_xxxx__WK041-2-G-48h-04B8_S117__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080795 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK041-2-G-48h-04B8_S117__bin.1 90.75144509 0.289017341 204 2058307 70.3 16209 SAMN37604672 SRR26215929 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK041-2-G-48h-04B8_S117__bin.1 MortensenS_xxxx__WK041-2-G-48h-04B8_S117__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;JAKVJE01 NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK041-2-G-48h-04B8_S117__bin.3 82.3 1.7 2383 9561137 38.77 4694 SAMN37604672 SRR26215929 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK041-2-L-08h-03F7_S71__bin.5 99.45652174 0 112 2782972 46.5 45664 SAMN37604673 SRR26215928 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK041-1-L-48h-03F6_S70__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK041-2-L-08h-03F7_S71__bin.6 78.53403141 2.006980803 504 1770532 38.56 3839 SAMN37604673 SRR26215928 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 MortensenS_xxxx__WK039-2-L-48h-03E9_S64__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus ghanensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK041-2-L-08h-03F7_S71__bin.2 87.23262032 1.069518717 314 1380745 38.93 5402 SAMN37604673 SRR26215928 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_020510245.1_ASM2051024v1_genomic MortensenS_xxxx__WK046-2-L-08h-03H9_S91__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus oeni tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK041-2-L-08h-03F7_S71__bin.8 81.5530303 1.060606061 7 1549268 53.6 304615 SAMN37604673 SRR26215928 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK041-2-G-48h-04B8_S117__bin.4 MortensenS_xxxx__WK041-2-G-48h-04B8_S117__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080795 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK041-2-L-08h-03F7_S71__bin.9 57.39746766 1.734104046 454 1382899 69.55 3272 SAMN37604673 SRR26215928 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK041-2-G-48h-04B8_S117__bin.1 MortensenS_xxxx__WK041-2-G-48h-04B8_S117__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;JAKVJE01 NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK041-2-L-08h-03F7_S71__bin.3 79.2 3.5 2606 9675510 38.77 4276 SAMN37604673 SRR26215928 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK041-2-L-08h-03F7_S71__bin.3 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK041-2-L-48h-03F8_S72__bin.9 97.23731884 0.096153846 176 2654001 46.55 24711 SAMN37604674 SRR26215927 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK041-1-L-48h-03F6_S70__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK041-2-L-48h-03F8_S72__bin.8 85.7360254 1.741293532 503 2156077 53.19 4975 SAMN37604674 SRR26215927 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK041-2-L-48h-03F8_S72__bin.1 93.40463458 0.802139037 305 1636553 38.41 7227 SAMN37604674 SRR26215927 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_020510245.1_ASM2051024v1_genomic MortensenS_xxxx__WK046-2-L-08h-03H9_S91__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus oeni tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK041-2-L-48h-03F8_S72__bin.3 98.77525253 3.333333333 15 2195219 53.67 362471 SAMN37604674 SRR26215927 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK041-2-G-48h-04B8_S117__bin.4 MortensenS_xxxx__WK041-2-G-48h-04B8_S117__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080795 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK042-1-L-08h-03F9_S73__bin.2 98.64253394 0 13 1959477 46.07 257901 SAMN37604675 SRR26215926 Estonia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK042-1-L-08h-03F9_S73__bin.1 65.51724138 0 98 1774907 53.21 27266 SAMN37604675 SRR26215926 Estonia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.3 100 0 42 2861859 52.18 116530 SAMN37604676 SRR26215925 Estonia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 100 0 14 2007432 46.08 342959 SAMN37604676 SRR26215925 Estonia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK042-2-G-48h-04B9_S118__bin.2 100 0 39 1983711 46.13 90448 SAMN37604677 SRR26215924 Estonia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK042-2-L-08h-03G2_S75__bin.1 98.19004525 0 12 1939370 46.07 294210 SAMN37604678 SRR26215923 Estonia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK042-2-L-48h-03G3_S76__bin.3 100 0 45 2709087 52.54 111611 SAMN37604679 SRR26215921 Estonia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK042-2-L-48h-03G3_S76__bin.2 98.64253394 0 12 1959693 46.07 294226 SAMN37604679 SRR26215921 Estonia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK043-1-L-08h-03G4_S77__bin.4 97.91666667 0.498188406 175 2846858 46.38 22860 SAMN37604680 SRR26215920 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK043-1-L-08h-03G4_S77__bin.2 99.47643979 0.749643027 130 2598287 36.6 33509 SAMN37604680 SRR26215920 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK033-1-L-08h-03B9_S37__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK043-1-L-08h-03G4_S77__bin.3 93.89140271 0 297 1767229 46.93 7781 SAMN37604680 SRR26215920 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK054-2-L-48h-04F1_S17__bin.10 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK043-1-L-48h-03G5_S78__bin.9 99.41203076 0.248756219 116 2481463 52.92 30003 SAMN37604681 SRR26215919 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK043-1-L-48h-03G5_S78__bin.11 98.91304348 0.27173913 146 2842934 46.35 31566 SAMN37604681 SRR26215919 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK043-1-L-48h-03G5_S78__bin.3 81.72113997 4.386363636 368 1933705 52.19 6579 SAMN37604681 SRR26215919 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK043-1-L-48h-03G5_S78__bin.6 96.91258131 3.708551483 425 2460219 36.6 7714 SAMN37604681 SRR26215919 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK033-1-L-08h-03B9_S37__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK043-1-L-48h-03G5_S78__bin.5 100 0 121 1945999 46.4 24558 SAMN37604681 SRR26215919 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK054-2-L-48h-04F1_S17__bin.10 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK043-1-L-48h-03G5_S78__bin.8 92.5 0.4 1433 10237094 41.04 9689 SAMN37604681 SRR26215919 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygotorulaspora Zygotorulaspora florentina tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK043-2-G-48h-04C1_S119__bin.7 97.57164404 0.339366516 191 1912269 46.55 13873 SAMN37604682 SRR26215835 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK043-2-L-48h-03G7_S80__bin.1 MortensenS_xxxx__WK043-2-L-48h-03G7_S80__bin.1 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis B tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK043-2-G-48h-04C1_S119__bin.8 88.66469581 2.173913043 453 2488648 46.67 7010 SAMN37604682 SRR26215835 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK043-2-G-48h-04C1_S119__bin.5 97.52525253 3.651515152 143 2312544 52.25 22574 SAMN37604682 SRR26215835 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK043-2-G-48h-04C1_S119__bin.2 97.89782643 1.308900524 296 2449965 36.62 11799 SAMN37604682 SRR26215835 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK033-1-L-08h-03B9_S37__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK043-2-G-48h-04C1_S119__bin.1 99.38159879 0.339366516 67 1989892 46.15 57655 SAMN37604682 SRR26215835 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK054-2-L-48h-04F1_S17__bin.10 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK043-2-G-48h-04C1_S119__bin.3 74.53972251 0.785340314 547 1762385 38.49 3397 SAMN37604682 SRR26215835 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 MortensenS_xxxx__WK043-2-G-48h-04C1_S119__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus ghanensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK043-2-L-08h-03G6_S79__bin.8 78.09308339 0.90497737599999994 404 1451444 47.17 4145 SAMN37604683 SRR26215834 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK043-2-L-48h-03G7_S80__bin.1 MortensenS_xxxx__WK043-2-L-48h-03G7_S80__bin.1 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis B tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK043-2-L-08h-03G6_S79__bin.5 92.90331197 0.60300207 421 2590453 46.57 8207 SAMN37604683 SRR26215834 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK043-2-L-08h-03G6_S79__bin.4 96.85863874 0.130890052 124 2261047 36.45 30724 SAMN37604683 SRR26215834 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK033-1-L-08h-03B9_S37__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK043-2-L-08h-03G6_S79__bin.6 98.64253394 0.22624434399999999 104 1956331 46.27 28067 SAMN37604683 SRR26215834 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK054-2-L-48h-04F1_S17__bin.10 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK043-2-L-48h-03G7_S80__bin.6 100 0 103 2683452 52.7 39642 SAMN37604684 SRR26215833 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK043-2-L-48h-03G7_S80__bin.1 96.11613876 0 201 1837616 46.63 13712 SAMN37604684 SRR26215833 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK043-2-L-48h-03G7_S80__bin.1 MortensenS_xxxx__WK043-2-L-48h-03G7_S80__bin.1 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis B tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK043-2-L-48h-03G7_S80__bin.4 97.82608696 0.561594203 179 2659850 46.7 20682 SAMN37604684 SRR26215833 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK043-2-L-48h-03G7_S80__bin.8 96.6540404 4.186147186 125 2241509 52.18 25718 SAMN37604684 SRR26215833 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK043-2-L-48h-03G7_S80__bin.5 95.66079645 2.857826461 520 2566784 36.76 6493 SAMN37604684 SRR26215833 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK033-1-L-08h-03B9_S37__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK043-2-L-48h-03G7_S80__bin.2 99.48717949 1.470588235 94 1991191 46.18 31753 SAMN37604684 SRR26215833 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK054-2-L-48h-04F1_S17__bin.10 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK043-2-L-48h-03G7_S80__bin.7 92.3 0.5 1558 10331683 41.15 8910 SAMN37604684 SRR26215833 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygotorulaspora Zygotorulaspora florentina tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK044-1-L-08h-03G8_S81__bin.6 97.90575916 0.523560209 231 2292968 40.43 13924 SAMN37604685 SRR26215832 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK044-1-L-08h-03G8_S81__bin.5 99.21465969 1.090750436 246 2389506 36.63 18838 SAMN37604685 SRR26215832 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK044-1-L-08h-03G8_S81__bin.2 89.48099799 1.990049751 487 2662968 59.66 6853 SAMN37604685 SRR26215832 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.6 MortensenS_xxxx__WK044-1-L-48h-03G9_S82__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter papayae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK044-1-L-08h-03G8_S81__bin.3 97.86616162 2.651515152 35 2403164 56.29 135238 SAMN37604685 SRR26215832 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080835 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK044-1-L-08h-03G8_S81__bin.7 77.13346148 0.445688226 504 1995110 53.23 4458 SAMN37604685 SRR26215832 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK044-1-L-08h-03G8_S81__bin.4 90.4 2 1972 10401911 38.5 6665 SAMN37604685 SRR26215832 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK044-1-L-48h-03G9_S82__bin.3 100 0.995024876 72 2798014 59.66 67124 SAMN37604686 SRR26215831 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.6 MortensenS_xxxx__WK044-1-L-48h-03G9_S82__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter papayae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK044-1-L-48h-03G9_S82__bin.2 98.50746269 0 97 2343179 53.33 40716 SAMN37604686 SRR26215831 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK044-1-L-48h-03G9_S82__bin.11 97.01492537 0.663349917 288 3199365 62.18 17297 SAMN37604686 SRR26215831 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK028-1-L-08h-02I7_S17__bin.1 MortensenS_xxxx__WK028-1-L-08h-02I7_S17__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK044-1-L-48h-03G9_S82__bin.1 95.81151832 0.959860384 358 2152751 40.65 8387 SAMN37604686 SRR26215831 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK044-1-L-48h-03G9_S82__bin.4 97.64397906 1.047120419 224 2396386 36.61 18316 SAMN37604686 SRR26215831 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK044-1-L-48h-03G9_S82__bin.7 83.45130409 1.658374793 783 3747273 64.52 6209 SAMN37604686 SRR26215831 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-2-L-48h-03H6_S88__bin.5 MortensenS_xxxx__WK045-2-L-48h-03H6_S88__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconacetobacter Gluconacetobacter dulcium tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK044-1-L-48h-03G9_S82__bin.12 64.96212121 0.454545455 13 1240105 56.7 181248 SAMN37604686 SRR26215831 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 MortensenS_xxxx__WK045-2-G-48h-04C3_S121__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080835 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK044-1-L-48h-03G9_S82__bin.5 83.2 1.9 2388 9671709 38.65 4783 SAMN37604686 SRR26215831 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK044-1-L-48h-03G9_S82__bin.5 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK044-2-G-48h-04C2_S120__bin.2 95.54973822 1.71845972 359 2264049 40.56 8381 SAMN37604687 SRR26215830 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK044-2-G-48h-04C2_S120__bin.3 96.47469459 3.054101222 273 2327926 36.65 13895 SAMN37604687 SRR26215830 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK045-2-G-48h-04C3_S121__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK044-2-G-48h-04C2_S120__bin.6 71.02272727 1.666666667 18 1766427 56.22 140750 SAMN37604687 SRR26215830 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080835 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK044-2-G-48h-04C2_S120__bin.4 94.1 2 1642 10651759 38.41 8671 SAMN37604687 SRR26215830 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK044-2-L-08h-03H1_S83__bin.3 95.81151832 0.523560209 333 2228152 40.56 9033 SAMN37604688 SRR26215829 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK044-2-L-08h-03H1_S83__bin.6 97.80104712 2.57417103 249 2279786 36.61 16302 SAMN37604688 SRR26215829 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK044-2-L-08h-03H1_S83__bin.7 72.49738767 0 505 1908939 53.25 4284 SAMN37604688 SRR26215829 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK044-2-L-08h-03H1_S83__bin.10 76.4 2 2497 8995179 38.81 4063 SAMN37604688 SRR26215829 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK044-2-L-08h-03H1_S83__bin.10 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK044-2-L-48h-03H2_S84__bin.7 97.51243781 1.990049751 92 2819610 59.76 46474 SAMN37604689 SRR26215827 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.6 MortensenS_xxxx__WK044-1-L-48h-03G9_S82__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter papayae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK044-2-L-48h-03H2_S84__bin.9 97.26368159 0.497512438 191 3150416 62.33 26598 SAMN37604689 SRR26215827 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK028-1-L-08h-02I7_S17__bin.1 MortensenS_xxxx__WK028-1-L-08h-02I7_S17__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK044-2-L-48h-03H2_S84__bin.4 97.21393035 0.497512438 151 2424568 53.12 23187 SAMN37604689 SRR26215827 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK044-2-L-48h-03H2_S84__bin.8 94.5026178 0.523560209 402 2089059 40.77 6635 SAMN37604689 SRR26215827 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK044-2-L-48h-03H2_S84__bin.6 98.95287958 0.959860384 192 2387741 36.55 23222 SAMN37604689 SRR26215827 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK044-2-L-48h-03H2_S84__bin.3 66.88131313 1.212121212 14 1822064 56.16 167697 SAMN37604689 SRR26215827 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080835 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK044-2-L-48h-03H2_S84__bin.10 75.92809413 2.269900498 864 3615165 64.48 4869 SAMN37604689 SRR26215827 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-2-L-48h-03H6_S88__bin.5 MortensenS_xxxx__WK045-2-L-48h-03H6_S88__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconacetobacter Gluconacetobacter dulcium tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK044-2-L-48h-03H2_S84__bin.1 70.6 2 2607 8483993 38.86 3621 SAMN37604689 SRR26215827 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK044-2-L-48h-03H2_S84__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-1-L-08h-03H3_S85__bin.9 100 0 83 2634158 52.68 45616 SAMN37604690 SRR26215826 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-1-L-08h-03H3_S85__bin.2 98.7654321 0.440917108 48 2003506 39.1 77798 SAMN37604690 SRR26215826 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK045-2-L-08h-03H5_S87__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-1-L-08h-03H3_S85__bin.11 98.42931937 2.094240838 216 2209208 40.67 13552 SAMN37604690 SRR26215826 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-1-L-08h-03H3_S85__bin.3 95.03884479 1.832460733 374 2308183 37 8196 SAMN37604690 SRR26215826 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK045-2-G-48h-04C3_S121__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-1-L-08h-03H3_S85__bin.8 91.79755672 3.150509486 364 1915992 35.58 7061 SAMN37604690 SRR26215826 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK045-2-L-08h-03H5_S87__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-1-L-08h-03H3_S85__bin.4 56.93181818 0.984848485 25 1591776 56.08 120971 SAMN37604690 SRR26215826 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080835 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-1-L-08h-03H3_S85__bin.6 50 0 9 925285 56.43 210504 SAMN37604690 SRR26215826 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 MortensenS_xxxx__WK045-2-G-48h-04C3_S121__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080835 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-1-L-08h-03H3_S85__bin.7 79.2 1.6 2527 9085603 38.81 4077 SAMN37604690 SRR26215826 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK044-1-L-48h-03G9_S82__bin.5 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.5 100 0 51 2643904 52.62 94619 SAMN37604691 SRR26215825 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.1 99.29453263 0.970017637 73 2131156 38.87 56174 SAMN37604691 SRR26215825 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK045-2-L-08h-03H5_S87__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.4 98.69109948 2.356020942 222 2319149 40.49 15982 SAMN37604691 SRR26215825 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.7 96.38172773 2.035278155 549 4197700 64.63 10975 SAMN37604691 SRR26215825 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-2-L-48h-03H6_S88__bin.5 MortensenS_xxxx__WK045-2-L-48h-03H6_S88__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconacetobacter Gluconacetobacter dulcium tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.8 87.95107808 2.19895288 496 1868553 37.51 4411 SAMN37604691 SRR26215825 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK045-2-G-48h-04C3_S121__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.2 92.23385689 3.141361257 453 1870713 35.79 5013 SAMN37604691 SRR26215825 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK045-2-L-08h-03H5_S87__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 98.32070707 2.651515152 27 2414667 56.28 156101 SAMN37604691 SRR26215825 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080835 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.9 69.6 1.6 2556 8201693 38.97 3533 SAMN37604691 SRR26215825 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.9 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-2-G-48h-04C3_S121__bin.2 97.38219895 1.54886562 183 2291899 40.34 17291 SAMN37604692 SRR26215824 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-2-G-48h-04C3_S121__bin.8 98.03664921 1.570680628 243 2419067 36.92 15166 SAMN37604692 SRR26215824 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK045-2-G-48h-04C3_S121__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-2-G-48h-04C3_S121__bin.1 52.82155524 0.130890052 382 1077791 36.38 2973 SAMN37604692 SRR26215824 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK045-2-L-08h-03H5_S87__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-2-G-48h-04C3_S121__bin.6 98.32070707 2.651515152 36 2378010 56.32 83876 SAMN37604692 SRR26215824 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 MortensenS_xxxx__WK045-2-G-48h-04C3_S121__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080835 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-2-G-48h-04C3_S121__bin.5 96.79144385 0 328 1845024 37.88 7501 SAMN37604692 SRR26215824 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_020510245.1_ASM2051024v1_genomic MortensenS_xxxx__WK046-2-L-08h-03H9_S91__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus oeni tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-2-G-48h-04C3_S121__bin.4 56.3 0 1973 6413615 41.78 3526 SAMN37604692 SRR26215824 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-08h-03F3_S67__bin.4 MortensenS_xxxx__WK045-2-G-48h-04C3_S121__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Lachancea Lachancea fermentati tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-2-G-48h-04C3_S121__bin.3 96.9 2.1 1069 11147690 38.24 15433 SAMN37604692 SRR26215824 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-2-L-08h-03H5_S87__bin.8 99.29453263 0.440917108 89 2009651 39.28 41530 SAMN37604693 SRR26215823 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK045-2-L-08h-03H5_S87__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-2-L-08h-03H5_S87__bin.12 95.98603839 1.500309632 200 2157076 40.58 16277 SAMN37604693 SRR26215823 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-2-L-08h-03H5_S87__bin.5 97.90575916 2.617801047 244 2181049 37.12 13922 SAMN37604693 SRR26215823 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK045-2-G-48h-04C3_S121__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-2-L-08h-03H5_S87__bin.4 92.28101915 1.786521936 616 4069222 64.8 9194 SAMN37604693 SRR26215823 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-2-L-48h-03H6_S88__bin.5 MortensenS_xxxx__WK045-2-L-48h-03H6_S88__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconacetobacter Gluconacetobacter dulcium tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-2-L-08h-03H5_S87__bin.6 90.2486911 1.570680628 514 2252181 35.65 5268 SAMN37604693 SRR26215823 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK045-2-L-08h-03H5_S87__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-2-L-08h-03H5_S87__bin.1 82.75862069 0 85 2431671 53.07 41755 SAMN37604693 SRR26215823 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-2-L-08h-03H5_S87__bin.11 64.50757576 0.454545455 12 1244958 56.71 133554 SAMN37604693 SRR26215823 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 MortensenS_xxxx__WK045-2-G-48h-04C3_S121__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080835 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-2-L-08h-03H5_S87__bin.7 81 1.6 2419 9418183 38.72 4546 SAMN37604693 SRR26215823 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK044-1-L-48h-03G9_S82__bin.5 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-2-L-48h-03H6_S88__bin.6 100 0 48 2453264 53.06 82321 SAMN37604694 SRR26215822 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-2-L-48h-03H6_S88__bin.1 98.7654321 0.970017637 56 1994611 39.1 66947 SAMN37604694 SRR26215822 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK045-2-L-08h-03H5_S87__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-2-L-48h-03H6_S88__bin.5 96.92446857 1.040253279 403 4272075 64.81 17300 SAMN37604694 SRR26215822 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-2-L-48h-03H6_S88__bin.5 MortensenS_xxxx__WK045-2-L-48h-03H6_S88__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconacetobacter Gluconacetobacter dulcium tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-2-L-48h-03H6_S88__bin.10 98.95287958 1.849349772 185 2402906 40.2 19755 SAMN37604694 SRR26215822 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-2-L-48h-03H6_S88__bin.8 85.36524557 2.22513089 450 1737996 35.64 4799 SAMN37604694 SRR26215822 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK045-2-L-08h-03H5_S87__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-2-L-48h-03H6_S88__bin.7 64.50757576 0.454545455 14 1262436 56.68 151433 SAMN37604694 SRR26215822 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 MortensenS_xxxx__WK045-2-G-48h-04C3_S121__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080835 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK045-2-L-48h-03H6_S88__bin.9 56.6 1.2 2418 6828122 39.19 2969 SAMN37604694 SRR26215822 Malaysia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK045-2-L-48h-03H6_S88__bin.9 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK046-1-L-08h-03H7_S89__bin.2 66.49146739 0.995024876 479 1681280 53.42 3721 SAMN37604695 SRR26215821 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK046-2-L-48h-03I1_S92__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK046-1-L-08h-03H7_S89__bin.3 98.12834225 0 29 1846086 37.62 138301 SAMN37604695 SRR26215821 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_020510245.1_ASM2051024v1_genomic MortensenS_xxxx__WK046-2-L-08h-03H9_S91__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus oeni tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK046-1-L-08h-03H7_S89__bin.6 89 2.1 2044 10326744 38.5 6209 SAMN37604695 SRR26215821 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK046-1-L-48h-03H8_S90__bin.2 97.26368159 0 208 2428979 53.16 17054 SAMN37604696 SRR26215820 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK046-2-L-48h-03I1_S92__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK046-1-L-48h-03H8_S90__bin.1 92.78074866 0 14 1548966 38.08 149636 SAMN37604696 SRR26215820 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_020510245.1_ASM2051024v1_genomic MortensenS_xxxx__WK046-2-L-08h-03H9_S91__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus oeni tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK046-1-L-48h-03H8_S90__bin.5 86.6 2 2155 10072436 38.55 5698 SAMN37604696 SRR26215820 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK046-2-G-48h-04C4_S122__bin.3 98.12834225 0 21 1839266 37.63 154136 SAMN37604697 SRR26215819 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_020510245.1_ASM2051024v1_genomic MortensenS_xxxx__WK046-2-L-08h-03H9_S91__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus oeni tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK046-2-G-48h-04C4_S122__bin.2 79.8 0.3 2308 9858487 40.11 4983 SAMN37604697 SRR26215819 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0118-001_Brettanomyces_anomalus_YV396 ODFM-BA-A-0118-001_Brettanomyces_anomalus_YV396 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Brettanomyces Brettanomyces anomalus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK046-2-G-48h-04C4_S122__bin.1 96.2 2.3 1146 10964037 38.3 13462 SAMN37604697 SRR26215819 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK046-2-L-08h-03H9_S91__bin.2 74.74729237 4.073383085 743 2410967 61.39 3511 SAMN37604698 SRR26215818 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967701__bin.5 MortensenS_xxxx__WK046-2-L-08h-03H9_S91__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter oxydans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK046-2-L-08h-03H9_S91__bin.6 98.12834225 0 17 1808183 37.66 154136 SAMN37604698 SRR26215818 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_020510245.1_ASM2051024v1_genomic MortensenS_xxxx__WK046-2-L-08h-03H9_S91__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus oeni tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK046-2-L-08h-03H9_S91__bin.4 92.1 2.1 1814 10620000 38.41 7549 SAMN37604698 SRR26215818 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK046-2-L-48h-03I1_S92__bin.5 100 0 84 2600630 52.83 56244 SAMN37604699 SRR26215816 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK046-2-L-48h-03I1_S92__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK046-2-L-48h-03I1_S92__bin.7 57.08572971 0.054347826 529 1517914 46.77 3025 SAMN37604699 SRR26215816 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK041-1-L-48h-03F6_S70__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK046-2-L-48h-03I1_S92__bin.2 72.4137931 0 462 2469717 59.79 6763 SAMN37604699 SRR26215816 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.6 MortensenS_xxxx__WK044-1-L-48h-03G9_S82__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter papayae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK046-2-L-48h-03I1_S92__bin.3 98.12834225 0 25 1821282 37.66 139174 SAMN37604699 SRR26215816 Singapore PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_020510245.1_ASM2051024v1_genomic MortensenS_xxxx__WK046-2-L-08h-03H9_S91__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus oeni tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK047-1-L-08h-03I2_S93__bin.3 97.82608696 0.543478261 114 2789094 46.54 43582 SAMN37604700 SRR26215815 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK047-1-L-08h-03I2_S93__bin.6 97.90575916 1.047120419 81 2245617 40.44 42801 SAMN37604700 SRR26215815 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK047-1-L-08h-03I2_S93__bin.4 99.47643979 0.698080279 170 2393885 37.37 22509 SAMN37604700 SRR26215815 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus ghanensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK047-1-L-08h-03I2_S93__bin.2 92.51336898 0 34 1667574 37.8 115322 SAMN37604700 SRR26215815 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_020510245.1_ASM2051024v1_genomic MortensenS_xxxx__WK046-2-L-08h-03H9_S91__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus oeni tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK047-1-L-08h-03I2_S93__bin.1 75.3 1.5 2560 8873203 38.77 3959 SAMN37604700 SRR26215815 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK047-1-L-48h-03I3_S94__bin.2 100 0 97 2614796 52.87 41172 SAMN37604701 SRR26215814 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK047-1-L-48h-03I3_S94__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK047-1-L-48h-03I3_S94__bin.3 98.36956522 0.067934783 114 2795807 46.51 41586 SAMN37604701 SRR26215814 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK047-1-L-48h-03I3_S94__bin.6 97.90575916 1.047120419 95 2414661 40.14 41038 SAMN37604701 SRR26215814 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK047-1-L-48h-03I3_S94__bin.4 98.56020942 0.17452007 292 2113877 37.78 10723 SAMN37604701 SRR26215814 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus ghanensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK047-1-L-48h-03I3_S94__bin.7 97.86096257 0 21 1817717 37.84 138984 SAMN37604701 SRR26215814 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_020510245.1_ASM2051024v1_genomic MortensenS_xxxx__WK046-2-L-08h-03H9_S91__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus oeni tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.5 97.37318841 0 142 2720171 46.65 27195 SAMN37604702 SRR26215813 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.2 99.47643979 1.047120419 91 2360173 40.31 40367 SAMN37604702 SRR26215813 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 99.47643979 0.17452007 98 2381531 37.43 43323 SAMN37604702 SRR26215813 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus ghanensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.1 97.21925134 0 75 1819836 37.84 41341 SAMN37604702 SRR26215813 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_020510245.1_ASM2051024v1_genomic MortensenS_xxxx__WK046-2-L-08h-03H9_S91__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus oeni tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.4 94.7 2.2 1403 10753327 38.35 10357 SAMN37604702 SRR26215813 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK047-2-L-08h-03I4_S95__bin.5 98.09782609 0 73 2770539 46.56 65201 SAMN37604703 SRR26215812 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK047-2-L-08h-03I4_S95__bin.3 97.38219895 1.745200698 123 2517204 37.26 36202 SAMN37604703 SRR26215812 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus ghanensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK047-2-L-08h-03I4_S95__bin.4 97.86096257 0 20 1766392 37.98 137019 SAMN37604703 SRR26215812 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_020510245.1_ASM2051024v1_genomic MortensenS_xxxx__WK046-2-L-08h-03H9_S91__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus oeni tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK047-2-L-08h-03I4_S95__bin.2 76.5 1.8 2567 8911239 38.86 3894 SAMN37604703 SRR26215812 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK047-2-L-48h-03I5_S96__bin.6 98.09782609 0 114 2867166 46.39 42755 SAMN37604704 SRR26215811 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK047-2-L-48h-03I5_S96__bin.2 98.50746269 0 81 2584704 52.81 55737 SAMN37604704 SRR26215811 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK047-1-L-48h-03I3_S94__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK047-2-L-48h-03I5_S96__bin.1 99.47643979 1.047120419 97 2419730 40.19 37829 SAMN37604704 SRR26215811 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK047-2-L-48h-03I5_S96__bin.5 98.42931937 0.17452007 289 2123519 37.75 10875 SAMN37604704 SRR26215811 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus ghanensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK047-2-L-48h-03I5_S96__bin.3 98.12834225 0 46 1924485 37.77 108171 SAMN37604704 SRR26215811 Australia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_020510245.1_ASM2051024v1_genomic MortensenS_xxxx__WK046-2-L-08h-03H9_S91__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus oeni tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-1-L-08h-03I6_S97__bin.7 97.406400970000007 0.815217391 258 2608589 46.62 14174 SAMN37604705 SRR26215810 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-1-L-08h-03I6_S97__bin.8 95.08910534 4.272727273 195 2206021 52.16 16437 SAMN37604705 SRR26215810 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-1-L-08h-03I6_S97__bin.9 94.88825086 3.77399651 401 2292465 36.21 7629 SAMN37604705 SRR26215810 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 MortensenS_xxxx__WK048-1-L-48h-03I7_S98__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus sp030400225 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-1-L-08h-03I6_S97__bin.1 89.24162257 0 53 1510715 39.5 42317 SAMN37604705 SRR26215810 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK048-1-L-08h-03I6_S97__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-1-L-08h-03I6_S97__bin.2 96.41149093 0 199 2367011 53.22 16336 SAMN37604705 SRR26215810 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK048-1-L-48h-03I7_S98__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-1-L-08h-03I6_S97__bin.4 63.9525981 0 520 1754703 35.57 3756 SAMN37604705 SRR26215810 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK048-1-L-08h-03I6_S97__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-1-L-08h-03I6_S97__bin.5 80.6 1.9 2424 9726248 38.5 4663 SAMN37604705 SRR26215810 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-1-L-48h-03I7_S98__bin.3 100 0 59 2798023 52.45 70020 SAMN37604706 SRR26215809 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK048-1-L-48h-03I7_S98__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-1-L-48h-03I7_S98__bin.5 87.02156095 1.320816864 482 2159152 46.78 5275 SAMN37604706 SRR26215809 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-1-L-48h-03I7_S98__bin.11 98.82575758 3.878787879 113 2242973 52.19 30760 SAMN37604706 SRR26215809 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-1-L-48h-03I7_S98__bin.1 90.32258065 2.726876091 533 2160171 36.52 5029 SAMN37604706 SRR26215809 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 MortensenS_xxxx__WK048-1-L-48h-03I7_S98__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus sp030400225 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-1-L-48h-03I7_S98__bin.8 88.64527629 0.891265597 317 1399724 40.88 5399 SAMN37604706 SRR26215809 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_004102045.2_ASM410204v2_genomic MortensenS_xxxx__WK055-2-G-48h-05G7_S113__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus sicerae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-1-L-48h-03I7_S98__bin.4 95.69160998 2.380952381 238 1935945 39.08 11805 SAMN37604706 SRR26215809 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK048-1-L-08h-03I6_S97__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-1-L-48h-03I7_S98__bin.10 97.68395924 2.338308458 151 2533826 58.67 24484 SAMN37604706 SRR26215809 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_15 MortensenS_xxxx__WK048-1-L-48h-03I7_S98__bin.10 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-1-L-48h-03I7_S98__bin.6 91.32123474 1.533996683 313 2003434 57.14 8443 SAMN37604706 SRR26215809 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 SRR10454494C1110_syzygii_assembly Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-1-L-48h-03I7_S98__bin.9 79.89681359 1.865671642 568 2425476 58.36 4959 SAMN37604706 SRR26215809 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK022-1-L-48h-02F8_S113__bin.6 MortensenS_xxxx__WK022-1-L-48h-02F8_S113__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter malorum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-1-L-48h-03I7_S98__bin.7 65.2 2.5 3215 9348244 38.71 3071 SAMN37604706 SRR26215809 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK048-1-L-48h-03I7_S98__bin.7 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-2-G-48h-04C6_S124__bin.4 96.45833333 0.3125 154 3011591 40.1 31327 SAMN37604707 SRR26215808 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-2-G-48h-04C6_S124__bin.1 81.12631132 2.860411899 516 2019371 46.93 4340 SAMN37604707 SRR26215808 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-2-G-48h-04C6_S124__bin.5 92.65787123 3.28042328 341 1735392 39.54 6406 SAMN37604707 SRR26215808 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK048-2-G-48h-04C6_S124__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-2-G-48h-04C6_S124__bin.3 94.17929293 2.727272727 69 2328758 56.16 50132 SAMN37604707 SRR26215808 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-1-L-48h-03H4_S86__bin.3 MortensenS_xxxx__WK033-2-L-08h-03C2_S39__bin.5 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia sp041080835 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-2-G-48h-04C6_S124__bin.6 85.5 1.9 2216 10016810 38.61 5474 SAMN37604707 SRR26215808 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-2-L-08h-03I8_S99__bin.3 95.45591787 1.168478261 305 2548934 46.68 11433 SAMN37604708 SRR26216058 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-2-L-08h-03I8_S99__bin.8 98.59038143 0.248756219 178 2485378 53.1 22118 SAMN37604708 SRR26216058 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK048-1-L-48h-03I7_S98__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-2-L-08h-03I8_S99__bin.10 98.35858586 3.333333333 78 2199515 52.33 41699 SAMN37604708 SRR26216058 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-2-L-08h-03I8_S99__bin.6 59.91448779 0.623885918 298 905930 41.3 3371 SAMN37604708 SRR26216058 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_004102045.2_ASM410204v2_genomic MortensenS_xxxx__WK055-2-G-48h-05G7_S113__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus sicerae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-2-L-08h-03I8_S99__bin.7 95.28619529 4.012345679 299 1908773 39 8971 SAMN37604708 SRR26216058 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK048-1-L-08h-03I6_S97__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-2-L-08h-03I8_S99__bin.1 70.2 1.4 2626 8466487 38.9 3596 SAMN37604708 SRR26216058 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK048-2-L-08h-03I8_S99__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-2-L-48h-03I9_S100__bin.12 100 0 66 2606137 52.75 65717 SAMN37604709 SRR26216056 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK048-1-L-48h-03I7_S98__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-2-L-48h-03I9_S100__bin.11 60.28708134 1.754385965 296 1051340 38.89 4083 SAMN37604709 SRR26216056 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MortensenS_xxxx__WK048-2-L-48h-03I9_S100__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-2-L-48h-03I9_S100__bin.10 64.90924796 0.367892977 533 1699191 46.79 3458 SAMN37604709 SRR26216056 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK048-2-L-48h-03I9_S100__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-2-L-48h-03I9_S100__bin.1 97.28535354 3.424242424 123 2270248 52.17 27602 SAMN37604709 SRR26216056 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-2-L-48h-03I9_S100__bin.3 73.43056231 1.515151515 318 1092096 41.11 3877 SAMN37604709 SRR26216056 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_004102045.2_ASM410204v2_genomic MortensenS_xxxx__WK055-2-G-48h-05G7_S113__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus sicerae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-2-L-48h-03I9_S100__bin.8 96.90659605 2.23880597 110 2527563 58.67 35589 SAMN37604709 SRR26216056 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_15 MortensenS_xxxx__WK048-1-L-48h-03I7_S98__bin.10 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK048-2-L-48h-03I9_S100__bin.9 92.87935323 1.620684457 338 2082282 56.97 8043 SAMN37604709 SRR26216056 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK048-2-L-48h-03I9_S100__bin.9 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK049-1-L-08h-05A6_S58__bin.2 69.65174129 0.995024876 19 1569001 60.98 191949 SAMN37604710 SRR26216055 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_275_3_oxydans_assembly MortensenS_xxxx__WK049-2-L-48h-05A9_S61__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter potus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK049-1-L-48h-05A7_S59__bin.1 53.23383085 0 10 924961 61.39 154739 SAMN37604711 SRR26216054 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_275_3_oxydans_assembly MortensenS_xxxx__WK049-2-L-48h-05A9_S61__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter potus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK049-1-L-48h-05A7_S59__bin.3 55.9 0.7 3192 8603580 41.98 2782 SAMN37604711 SRR26216054 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK065-1-L-08h-05B1_S62__bin.1 MortensenS_xxxx__WK049-1-L-48h-05A7_S59__bin.3 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia fermentans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK049-2-G-48h-05H8_S123__bin.2 99.75124378 0.995024876 79 3238568 60.87 76358 SAMN37604712 SRR26216053 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_275_3_oxydans_assembly MortensenS_xxxx__WK049-2-L-48h-05A9_S61__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter potus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK049-2-L-08h-05A8_S60__bin.2 66.66666667 1.243781095 72 1636352 61.05 40950 SAMN37604713 SRR26216052 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_275_3_oxydans_assembly MortensenS_xxxx__WK049-2-L-48h-05A9_S61__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter potus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK049-2-L-48h-05A9_S61__bin.2 99.75124378 0.995024876 44 3146920 60.86 158336 SAMN37604714 SRR26216051 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_275_3_oxydans_assembly MortensenS_xxxx__WK049-2-L-48h-05A9_S61__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter potus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK049-2-L-48h-05A9_S61__bin.1 57.1 0.5 3152 8743901 41.9 2863 SAMN37604714 SRR26216051 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK065-1-L-08h-05B1_S62__bin.1 MortensenS_xxxx__WK049-2-L-48h-05A9_S61__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia fermentans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-1-L-08h-04C7_S125__bin.6 99.50248756 0 114 2520007 53.09 32709 SAMN37604715 SRR26216050 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK050-1-L-08h-04C7_S125__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-1-L-08h-04C7_S125__bin.4 98.36956522 0 105 2738850 46.44 47974 SAMN37604715 SRR26216050 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-1-L-08h-04C7_S125__bin.13 100 0 109 1931053 39.07 27791 SAMN37604715 SRR26216050 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-1-L-08h-04C7_S125__bin.11 87.91666667 2.878787879 17 1820846 52.27 146989 SAMN37604715 SRR26216050 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-1-L-08h-04C7_S125__bin.14 86.26884023 2.617801047 459 1972261 40.92 5003 SAMN37604715 SRR26216050 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-1-L-08h-04C7_S125__bin.3 95.77114428 0.995024876 67 2195520 59.02 51151 SAMN37604715 SRR26216050 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. SRR10454516C127_okinawensis_assembly MortensenS_xxxx__WK050-2-L-08h-04C9_S127__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter okinawensis A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-1-L-08h-04C7_S125__bin.5 98.10842763 0 41 2217849 36.53 134208 SAMN37604715 SRR26216050 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-1-L-08h-04C7_S125__bin.1 83.94324881 1.221640489 487 2112921 38.19 4959 SAMN37604715 SRR26216050 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 MortensenS_xxxx__WK050-1-L-08h-04C7_S125__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus ghanensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-1-L-08h-04C7_S125__bin.9 75.4 1.7 2592 9222809 38.83 4007 SAMN37604715 SRR26216050 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK050-1-L-08h-04C7_S125__bin.9 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-1-L-48h-04C8_S126__bin.9 100 2.23880597 133 2875236 59.79 34721 SAMN37604716 SRR26216049 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.6 MortensenS_xxxx__WK050-1-L-48h-04C8_S126__bin.9 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter papayae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-1-L-48h-04C8_S126__bin.10 99.50248756 0.497512438 130 2516657 53.13 30198 SAMN37604716 SRR26216049 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK050-1-L-08h-04C7_S125__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-1-L-48h-04C8_S126__bin.6 98.05602007 0.108695652 173 2722891 46.48 23334 SAMN37604716 SRR26216049 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-1-L-48h-04C8_S126__bin.5 97.08994709 0 210 1870057 39.27 12481 SAMN37604716 SRR26216049 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-1-L-48h-04C8_S126__bin.8 98.82575758 2.96969697 29 2279565 52.14 137374 SAMN37604716 SRR26216049 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-1-L-48h-04C8_S126__bin.14 94.20137217 1.094527363 136 2266690 58.91 24672 SAMN37604716 SRR26216049 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. SRR10454516C127_okinawensis_assembly MortensenS_xxxx__WK050-2-L-08h-04C9_S127__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter okinawensis A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-1-L-48h-04C8_S126__bin.7 99.47643979 0.17452007 123 2301706 36.59 35040 SAMN37604716 SRR26216049 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-1-L-48h-04C8_S126__bin.12 77.93103448 3.448275862 283 2402845 58.78 12229 SAMN37604716 SRR26216049 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK050-1-L-48h-04C8_S126__bin.12 MortensenS_xxxx__WK050-1-L-48h-04C8_S126__bin.12 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-2-G-48h-04D2_S129__bin.5 99.16071429 2.395833333 252 3275852 39.97 20659 SAMN37604717 SRR26216048 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-2-G-48h-04D2_S129__bin.4 95.92391304 0 114 2542559 46.61 37448 SAMN37604717 SRR26216048 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-2-G-48h-04D2_S129__bin.7 98.82575758 2.96969697 24 2280419 52.12 151490 SAMN37604717 SRR26216048 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-2-G-48h-04D2_S129__bin.1 50.08526406 1.094716802 418 1105097 41.42 2667 SAMN37604717 SRR26216048 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic MortensenS_xxxx__WK050-2-G-48h-04D2_S129__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-2-G-48h-04D2_S129__bin.6 97.95642628 2.268760908 85 2318922 36.52 73175 SAMN37604717 SRR26216048 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-2-G-48h-04D2_S129__bin.3 82.7232168 1.919720768 460 1890831 38.32 4813 SAMN37604717 SRR26216048 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 MortensenS_xxxx__WK050-1-L-08h-04C7_S125__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus ghanensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-2-G-48h-04D2_S129__bin.2 64.8 1.7 2605 7970225 38.98 3322 SAMN37604717 SRR26216048 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK050-2-G-48h-04D2_S129__bin.2 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-2-L-08h-04C9_S127__bin.10 95.10869565 0 97 2521034 46.63 40057 SAMN37604718 SRR26216047 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-2-L-08h-04C9_S127__bin.2 94.6031746 0 174 1596379 39.75 12532 SAMN37604718 SRR26216047 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-2-L-08h-04C9_S127__bin.9 98.82575758 2.878787879 24 2232365 52.22 156343 SAMN37604718 SRR26216047 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-2-L-08h-04C9_S127__bin.7 94.13918312 0.348258706 84 2077773 59.22 41255 SAMN37604718 SRR26216047 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. SRR10454516C127_okinawensis_assembly MortensenS_xxxx__WK050-2-L-08h-04C9_S127__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter okinawensis A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-2-L-08h-04C9_S127__bin.1 99.47643979 0.436300175 64 2274102 36.52 75778 SAMN37604718 SRR26216047 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-2-L-08h-04C9_S127__bin.4 81.26653718 3.664921466 618 2237929 37.97 4137 SAMN37604718 SRR26216047 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 MortensenS_xxxx__WK050-1-L-08h-04C7_S125__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus ghanensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-2-L-08h-04C9_S127__bin.8 66.73074024 0 516 1752458 53.18 3759 SAMN37604718 SRR26216047 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK050-1-L-08h-04C7_S125__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-2-L-48h-04D1_S128__bin.5 68.31453856 0.36584792 582 1750694 46.46 3195 SAMN37604719 SRR26216045 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK050-2-L-48h-04D1_S128__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-2-L-48h-04D1_S128__bin.10 89.68538431 0.176366843 385 1626399 39.63 5140 SAMN37604719 SRR26216045 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-2-L-48h-04D1_S128__bin.3 98.37121212 2.96969697 51 2269716 52.04 64090 SAMN37604719 SRR26216045 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-2-L-48h-04D1_S128__bin.2 98.29842932 0.261780105 279 2173012 36.88 11290 SAMN37604719 SRR26216045 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-2-L-48h-04D1_S128__bin.8 70.17241379 2.586206897 173 1926939 59.7 18118 SAMN37604719 SRR26216045 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. SRR10454516C127_okinawensis_assembly MortensenS_xxxx__WK050-2-L-08h-04C9_S127__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter okinawensis A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK050-2-L-48h-04D1_S128__bin.9 51.7816092 4.310344828 582 2402939 58.07 4897 SAMN37604719 SRR26216045 Italy PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK050-1-L-48h-04C8_S126__bin.12 MortensenS_xxxx__WK050-1-L-48h-04C8_S126__bin.12 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK051-1-L-08h-04D4_S2__bin.4 98.42336576 1.587301587 264 1929764 37.81 11451 SAMN37604720 SRR26216044 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MortensenS_xxxx__WK054-2-L-08h-04E9_S16__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK051-1-L-08h-04D4_S2__bin.6 74.31034483 0 575 2262193 46.41 4770 SAMN37604720 SRR26216044 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK051-1-L-08h-04D4_S2__bin.2 54.38596491 0 17 868083 39.16 436855 SAMN37604720 SRR26216044 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK051-1-L-48h-04D5_S3__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK051-1-L-08h-04D4_S2__bin.9 96.07329843 1.439790576 335 2216209 40.59 9432 SAMN37604720 SRR26216044 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK051-1-L-08h-04D4_S2__bin.1 99.47643979 1.413612565 129 3022043 34.98 47224 SAMN37604720 SRR26216044 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK053-2-L-08h-04E5_S12__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK051-1-L-48h-04D5_S3__bin.2 94.04335211 0 47 1476096 38.13 71226 SAMN37604721 SRR26216043 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MortensenS_xxxx__WK054-2-L-08h-04E9_S16__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK051-1-L-48h-04D5_S3__bin.4 96.67119565 0.362318841 316 2878144 46.34 12101 SAMN37604721 SRR26216043 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK051-1-L-48h-04D5_S3__bin.1 97.65151515 3.628787879 180 2248180 52.13 18955 SAMN37604721 SRR26216043 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK051-1-L-48h-04D5_S3__bin.6 99.68709108 0 46 2004551 39.04 70016 SAMN37604721 SRR26216043 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK051-1-L-48h-04D5_S3__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK051-1-L-48h-04D5_S3__bin.9 98.42931937 0.785340314 324 2333871 40.48 9899 SAMN37604721 SRR26216043 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK051-2-G-48h-04D3_S1__bin.3 97.19202899 0.169082126 197 2704305 46.61 19177 SAMN37604722 SRR26216042 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK051-2-G-48h-04D3_S1__bin.2 98.82575758 2.96969697 42 2300560 52.14 109169 SAMN37604722 SRR26216042 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK051-2-G-48h-04D3_S1__bin.4 99.82363316 0.281618024 110 1848642 39.39 27606 SAMN37604722 SRR26216042 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK051-1-L-48h-04D5_S3__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK051-2-G-48h-04D3_S1__bin.6 98.62565445 0.785340314 201 2229836 40.54 16576 SAMN37604722 SRR26216042 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK051-2-G-48h-04D3_S1__bin.5 96.59685864 1.217277487 538 2921763 35.55 7445 SAMN37604722 SRR26216042 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK053-2-L-08h-04E5_S12__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK051-2-G-48h-04D3_S1__bin.9 72 1.5 2536 8571882 38.96 3818 SAMN37604722 SRR26216042 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK051-2-G-48h-04D3_S1__bin.9 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK051-2-L-08h-04D6_S4__bin.4 98.82232463 0.529100529 215 1901560 37.7 13313 SAMN37604723 SRR26216041 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MortensenS_xxxx__WK054-2-L-08h-04E9_S16__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK051-2-L-08h-04D6_S4__bin.1 89.25961172 0.230978261 463 2738603 46.4 7845 SAMN37604723 SRR26216041 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK051-2-L-08h-04D6_S4__bin.5 75.15367965 2.348484848 439 1665129 52.22 4248 SAMN37604723 SRR26216041 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK051-2-L-08h-04D6_S4__bin.8 99.67002333 0 40 1919030 39.14 69875 SAMN37604723 SRR26216041 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK051-1-L-48h-04D5_S3__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK051-2-L-08h-04D6_S4__bin.2 98.2547993 1.047120419 249 2238911 40.58 12239 SAMN37604723 SRR26216041 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK051-2-L-08h-04D6_S4__bin.6 99.47643979 0.890052356 96 2803899 34.86 52336 SAMN37604723 SRR26216041 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK053-2-L-08h-04E5_S12__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK051-2-L-48h-04D7_S5__bin.6 97.71292029 0.529100529 81 1854543 37.76 37713 SAMN37604724 SRR26216040 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MortensenS_xxxx__WK054-2-L-08h-04E9_S16__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK051-2-L-48h-04D7_S5__bin.8 93.24337705 0.360265212 494 2817999 46.39 7383 SAMN37604724 SRR26216040 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK051-2-L-48h-04D7_S5__bin.7 96.08333333 3.196969697 134 2244024 52.02 26270 SAMN37604724 SRR26216040 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK051-2-L-48h-04D7_S5__bin.1 99.68709108 0 55 2058694 38.95 69791 SAMN37604724 SRR26216040 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK051-1-L-48h-04D5_S3__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK051-2-L-48h-04D7_S5__bin.10 97.90575916 1.047120419 337 2405415 40.29 9381 SAMN37604724 SRR26216040 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK051-2-L-48h-04D7_S5__bin.4 90.67838958 4.145936982 344 2793849 57.84 11456 SAMN37604724 SRR26216040 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 MortensenS_xxxx__WK054-2-L-48h-04F1_S17__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lovaniensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK051-2-L-48h-04D7_S5__bin.3 98.95287958 1.221640489 180 2632610 34.97 23969 SAMN37604724 SRR26216040 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK053-2-L-08h-04E5_S12__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK052-1-L-08h-04D8_S6__bin.2 97.86691542 0.248756219 215 2416590 53.2 17067 SAMN37604725 SRR26216039 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK054-1-L-48h-04E8_S15__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK052-1-L-48h-04D9_S7__bin.5 100 0.248756219 76 2679888 52.52 53172 SAMN37604726 SRR26216038 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK054-1-L-48h-04E8_S15__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK052-2-L-08h-04E1_S8__bin.1 95.4 3.2 998 10531778 41.03 15705 SAMN37604728 SRR26216036 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygotorulaspora Zygotorulaspora florentina tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK052-2-L-48h-04E2_S9__bin.3 100 1.990049751 78 2600004 52.85 51843 SAMN37604729 SRR26216034 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK054-1-L-48h-04E8_S15__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK052-2-L-48h-04E2_S9__bin.1 53.79310345 1.724137931 386 1655854 57.22 5216 SAMN37604729 SRR26216034 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK056-2-L-08h-04F8_S24__bin.13 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK052-2-L-48h-04E2_S9__bin.4 64.2 2.3 2124 7741680 41.12 4025 SAMN37604729 SRR26216034 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygotorulaspora Zygotorulaspora florentina tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK053-1-L-08h-04E3_S10__bin.1 96.73913043 0.27173913 132 2831006 46.31 33738 SAMN37604730 SRR26216033 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK053-1-L-08h-04E3_S10__bin.7 99.29453263 0.176366843 31 1801144 39.3 84144 SAMN37604730 SRR26216033 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK053-1-L-48h-04E4_S11__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK053-1-L-08h-04E3_S10__bin.3 99.47643979 0.890052356 60 2647244 34.8 80753 SAMN37604730 SRR26216033 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK053-2-L-08h-04E5_S12__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK053-1-L-08h-04E3_S10__bin.4 86.83715715 0.713012478 307 1394571 43.3 5594 SAMN37604730 SRR26216033 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK062-2-L-48h-04I6_S49__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK053-1-L-48h-04E4_S11__bin.8 97.97101449 0 114 2681883 46.61 38866 SAMN37604731 SRR26216032 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK053-1-L-48h-04E4_S11__bin.2 99.82363316 0.176366843 41 2129437 38.87 87049 SAMN37604731 SRR26216032 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK053-1-L-48h-04E4_S11__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK053-1-L-48h-04E4_S11__bin.6 89.38263229 2.781546811 528 2181169 53.29 4927 SAMN37604731 SRR26216032 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK053-1-L-48h-04E4_S11__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK053-1-L-48h-04E4_S11__bin.5 99.47643979 0.523560209 157 2555938 34.95 29968 SAMN37604731 SRR26216032 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK053-2-L-08h-04E5_S12__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK053-1-L-48h-04E4_S11__bin.3 97.86096257 1.069518717 31 1705779 42.91 88090 SAMN37604731 SRR26216032 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK062-2-L-48h-04I6_S49__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK053-1-L-48h-04E4_S11__bin.7 89.8 1.7 1785 10276717 41.03 7490 SAMN37604731 SRR26216032 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygotorulaspora Zygotorulaspora florentina tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK053-2-G-48h-05G5_S111__bin.3 87.86197917 0.3125 500 2760773 40.34 7167 SAMN37604732 SRR26216031 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK053-2-G-48h-05G5_S111__bin.8 99.18478261 0 111 2733930 46.42 44270 SAMN37604732 SRR26216031 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK053-2-G-48h-05G5_S111__bin.2 58.88005051 2.287878788 439 1374468 52.14 3330 SAMN37604732 SRR26216031 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK053-2-G-48h-05G5_S111__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK053-2-G-48h-05G5_S111__bin.1 98.23633157 0.176366843 167 2045626 39.12 18907 SAMN37604732 SRR26216031 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK053-1-L-48h-04E4_S11__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK053-2-G-48h-05G5_S111__bin.5 99.47643979 0 58 2393593 34.89 71087 SAMN37604732 SRR26216031 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK053-2-L-08h-04E5_S12__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK053-2-G-48h-05G5_S111__bin.4 97.86096257 0.534759358 40 1692114 42.93 75064 SAMN37604732 SRR26216031 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK062-2-L-48h-04I6_S49__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK053-2-L-08h-04E5_S12__bin.7 98.36956522 0.028604119 171 2913711 46.33 25707 SAMN37604733 SRR26215807 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK053-2-L-08h-04E5_S12__bin.6 66.66666667 0 13 1198976 39.11 184748 SAMN37604733 SRR26215807 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK053-1-L-48h-04E4_S11__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK053-2-L-08h-04E5_S12__bin.4 99.47643979 0 59 2548422 34.87 81588 SAMN37604733 SRR26215807 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK053-2-L-08h-04E5_S12__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK053-2-L-08h-04E5_S12__bin.8 56.15860607 0.178253119 339 1008390 43.34 3117 SAMN37604733 SRR26215807 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK062-2-L-48h-04I6_S49__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK053-2-L-48h-04E6_S13__bin.4 97.55434783 0.27173913 173 2872388 46.35 25139 SAMN37604734 SRR26215806 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK053-2-L-48h-04E6_S13__bin.5 99.29453263 0.176366843 34 2001495 39.13 98571 SAMN37604734 SRR26215806 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK053-1-L-48h-04E4_S11__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK053-2-L-48h-04E6_S13__bin.10 97.15626413 2.860696517 338 3084958 57.36 12351 SAMN37604734 SRR26215806 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 MortensenS_xxxx__WK054-2-L-48h-04F1_S17__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lovaniensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK053-2-L-48h-04E6_S13__bin.1 98.95287958 1.464279682 247 2807277 35 19408 SAMN37604734 SRR26215806 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK053-2-L-08h-04E5_S12__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK053-2-L-48h-04E6_S13__bin.6 97.86096257 0.534759358 18 1726025 42.84 174777 SAMN37604734 SRR26215806 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK062-2-L-48h-04I6_S49__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-1-L-08h-04E7_S14__bin.6 99.75124378 0 135 2470975 53.02 30004 SAMN37604735 SRR26215805 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK054-1-L-48h-04E8_S15__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-1-L-08h-04E7_S14__bin.3 100 0 13 1886799 37.67 268859 SAMN37604735 SRR26215805 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MortensenS_xxxx__WK054-2-L-08h-04E9_S16__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-1-L-08h-04E7_S14__bin.1 95.84069916 0.966764214 301 2739959 46.48 13808 SAMN37604735 SRR26215805 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-1-L-08h-04E7_S14__bin.2 97.90575916 1.221640489 257 2323663 40.41 13139 SAMN37604735 SRR26215805 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-1-L-08h-04E7_S14__bin.7 96.16055846 0 328 2509082 35.08 10972 SAMN37604735 SRR26215805 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK053-2-L-08h-04E5_S12__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-1-L-08h-04E7_S14__bin.9 51.7 0.4 2204 6639830 41.15 3242 SAMN37604735 SRR26215805 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygotorulaspora Zygotorulaspora florentina tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-1-L-08h-04E7_S14__bin.5 83.5 2 2394 9961733 38.56 4915 SAMN37604735 SRR26215805 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-1-L-48h-04E8_S15__bin.2 100 0 41 2423089 53 90702 SAMN37604736 SRR26215804 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK054-1-L-48h-04E8_S15__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-1-L-48h-04E8_S15__bin.8 100 0 56 1990642 37.63 84227 SAMN37604736 SRR26215804 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MortensenS_xxxx__WK054-2-L-08h-04E9_S16__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-1-L-48h-04E8_S15__bin.9 96.34933907 1.530580404 406 2714958 46.63 9227 SAMN37604736 SRR26215804 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-1-L-48h-04E8_S15__bin.7 77.86093074 2.272727273 444 1817205 52.19 4707 SAMN37604736 SRR26215804 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK054-1-L-48h-04E8_S15__bin.7 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-1-L-48h-04E8_S15__bin.1 96.51741294 0.497512438 127 2693884 58.11 33805 SAMN37604736 SRR26215804 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 MortensenS_xxxx__WK054-2-L-48h-04F1_S17__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lovaniensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-1-L-48h-04E8_S15__bin.3 98.95287958 1.151832461 268 2330478 40.41 12094 SAMN37604736 SRR26215804 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-1-L-48h-04E8_S15__bin.4 70.32286213 0 544 1647151 36.54 3192 SAMN37604736 SRR26215804 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK054-1-L-48h-04E8_S15__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-1-L-48h-04E8_S15__bin.11 97.9638009 0 285 1829392 46.87 8855 SAMN37604736 SRR26215804 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK054-2-L-48h-04F1_S17__bin.10 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-1-L-48h-04E8_S15__bin.6 74.47983246 0.178253119 386 1306210 43.28 3747 SAMN37604736 SRR26215804 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK062-2-L-48h-04I6_S49__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-2-G-48h-05G6_S112__bin.1 77.58984375 3.006944444 644 2518103 40.41 4515 SAMN37604737 SRR26215803 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-2-G-48h-05G6_S112__bin.4 89.43914186 0.951132201 447 2594111 46.52 7317 SAMN37604737 SRR26215803 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-2-G-48h-05G6_S112__bin.2 97.53926702 1.282722513 176 2205634 40.51 17280 SAMN37604737 SRR26215803 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-2-G-48h-05G6_S112__bin.3 97.90575916 0.523560209 352 2758825 35.25 10964 SAMN37604737 SRR26215803 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK053-2-L-08h-04E5_S12__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-2-G-48h-05G6_S112__bin.5 99.09502262 0.22624434399999999 17 1921352 46.21 192830 SAMN37604737 SRR26215803 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK054-2-L-48h-04F1_S17__bin.10 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-2-L-08h-04E9_S16__bin.8 100 0 14 1878365 37.68 268859 SAMN37604738 SRR26215802 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MortensenS_xxxx__WK054-2-L-08h-04E9_S16__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-2-L-08h-04E9_S16__bin.4 90.58771106 0.830894649 425 2696275 46.42 8910 SAMN37604738 SRR26215802 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-2-L-08h-04E9_S16__bin.10 58.87301587 2.553030303 407 1385132 52.12 3655 SAMN37604738 SRR26215802 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK054-2-L-08h-04E9_S16__bin.10 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-2-L-08h-04E9_S16__bin.6 97.960199 0.746268657 199 2474838 53.02 19279 SAMN37604738 SRR26215802 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK054-1-L-48h-04E8_S15__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-2-L-08h-04E9_S16__bin.2 99.47643979 1.308900524 247 2330605 40.39 14199 SAMN37604738 SRR26215802 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-2-L-08h-04E9_S16__bin.11 99.47643979 0 68 2575739 34.96 71282 SAMN37604738 SRR26215802 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK053-2-L-08h-04E5_S12__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-2-L-08h-04E9_S16__bin.7 99.54751131 0 84 1972337 46.32 35860 SAMN37604738 SRR26215802 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK054-2-L-48h-04F1_S17__bin.10 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-2-L-08h-04E9_S16__bin.5 78.5 1.4 2558 9390807 38.65 4196 SAMN37604738 SRR26215802 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-2-L-48h-04F1_S17__bin.1 100 0 52 2486403 52.99 68856 SAMN37604739 SRR26215800 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK054-1-L-48h-04E8_S15__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-2-L-48h-04F1_S17__bin.13 100 0 41 1990874 37.58 129772 SAMN37604739 SRR26215800 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MortensenS_xxxx__WK054-2-L-08h-04E9_S16__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-2-L-48h-04F1_S17__bin.6 97.01492537 0 77 2521852 58.47 48007 SAMN37604739 SRR26215800 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 MortensenS_xxxx__WK054-2-L-48h-04F1_S17__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lovaniensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-2-L-48h-04F1_S17__bin.3 93.45549738 0.523560209 287 2133081 40.75 9983 SAMN37604739 SRR26215800 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-2-L-48h-04F1_S17__bin.4 96.68411867 2.984293194 535 2361964 35.57 5132 SAMN37604739 SRR26215800 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1 MortensenS_xxxx__WK053-2-L-08h-04E5_S12__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus hordei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK054-2-L-48h-04F1_S17__bin.10 100 0 45 2014129 46.21 76508 SAMN37604739 SRR26215800 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK054-2-L-48h-04F1_S17__bin.10 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK055-1-L-08h-04F2_S18__bin.6 97.95986622 0.108695652 219 2822872 46.45 18926 SAMN37604740 SRR26215799 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK055-1-L-08h-04F2_S18__bin.3 98.39572193 0.178253119 32 1611629 40.14 132392 SAMN37604740 SRR26215799 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_004102045.2_ASM410204v2_genomic MortensenS_xxxx__WK055-2-G-48h-05G7_S113__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus sicerae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK055-1-L-08h-04F2_S18__bin.5 99.47643979 0.523560209 189 2473646 40.09 22960 SAMN37604740 SRR26215799 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK055-1-L-08h-04F2_S18__bin.7 99.47643979 0 41 2317525 36.6 148900 SAMN37604740 SRR26215799 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK055-1-L-08h-04F2_S18__bin.8 71.10376757 1.741293532 693 2321787 60.61 3672 SAMN37604740 SRR26215799 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. OlgaP_2019__SRR11910536__bin.9 MortensenS_xxxx__WK055-1-L-08h-04F2_S18__bin.8 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas hansenii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK055-1-L-08h-04F2_S18__bin.2 62.4 1.3 2624 7839473 38.79 3208 SAMN37604740 SRR26215799 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK055-1-L-08h-04F2_S18__bin.2 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK055-1-L-48h-04F3_S19__bin.3 97.86096257 0.178253119 44 1505042 40.41 61832 SAMN37604741 SRR26215798 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_004102045.2_ASM410204v2_genomic MortensenS_xxxx__WK055-2-G-48h-05G7_S113__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus sicerae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK055-1-L-48h-04F3_S19__bin.4 79.64335979 1.094716802 555 1857411 40.84 3756 SAMN37604741 SRR26215798 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK055-1-L-48h-04F3_S19__bin.5 98.95287958 0.698080279 248 2424816 36.87 15406 SAMN37604741 SRR26215798 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK055-2-G-48h-05G7_S113__bin.2 99.375 0.3125 117 3152495 39.95 44978 SAMN37604742 SRR26215797 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK055-2-G-48h-05G7_S113__bin.5 97.82608696 0 111 2796245 46.49 41301 SAMN37604742 SRR26215797 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK055-2-G-48h-05G7_S113__bin.4 72.41623828 1.458333333 642 2182141 40.33 3749 SAMN37604742 SRR26215797 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 MortensenS_xxxx__WK055-2-G-48h-05G7_S113__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK055-2-G-48h-05G7_S113__bin.1 98.39572193 0.178253119 18 1604537 40.11 186454 SAMN37604742 SRR26215797 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_004102045.2_ASM410204v2_genomic MortensenS_xxxx__WK055-2-G-48h-05G7_S113__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus sicerae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK055-2-G-48h-05G7_S113__bin.3 98.95287958 0.523560209 79 2399337 40.25 47665 SAMN37604742 SRR26215797 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK055-2-G-48h-05G7_S113__bin.8 99.47643979 0 44 2280496 36.57 89935 SAMN37604742 SRR26215797 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK055-2-G-48h-05G7_S113__bin.6 90.11920847 2.3996509600000002 482 2221127 37.68 5566 SAMN37604742 SRR26215797 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 MortensenS_xxxx__WK055-2-G-48h-05G7_S113__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus ghanensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK055-2-L-08h-04F4_S20__bin.4 97.02898551 0.18115942 157 2765286 46.53 24973 SAMN37604743 SRR26215796 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK055-2-L-08h-04F4_S20__bin.1 98.39572193 0.178253119 36 1612572 40.17 87505 SAMN37604743 SRR26215796 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_004102045.2_ASM410204v2_genomic MortensenS_xxxx__WK055-2-G-48h-05G7_S113__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus sicerae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK055-2-L-08h-04F4_S20__bin.5 97.38219895 1.064009458 365 2570016 40.28 9969 SAMN37604743 SRR26215796 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK055-2-L-08h-04F4_S20__bin.3 96.37798909 2.338308458 119 2604410 58.56 36295 SAMN37604743 SRR26215796 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_15 MortensenS_xxxx__WK056-1-L-48h-04F7_S23__bin.9 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK055-2-L-08h-04F4_S20__bin.7 95.38296421 2.23880597 92 2380698 56.19 47064 SAMN37604743 SRR26215796 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK056-2-L-08h-04F8_S24__bin.13 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK055-2-L-08h-04F4_S20__bin.6 99.47643979 0 53 2360948 36.63 103203 SAMN37604743 SRR26215796 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK055-2-L-08h-04F4_S20__bin.8 86.24579935 1.409618574 668 2701350 60.15 4849 SAMN37604743 SRR26215796 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. OlgaP_2019__SRR11910536__bin.9 MortensenS_xxxx__WK055-2-L-08h-04F4_S20__bin.8 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas hansenii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK055-2-L-48h-04F5_S21__bin.5 82.88029818 1.351067887 525 2404195 46.68 5539 SAMN37604744 SRR26215795 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK055-2-L-48h-04F5_S21__bin.6 97.32620321 0.178253119 42 1422343 40.5 53525 SAMN37604744 SRR26215795 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_004102045.2_ASM410204v2_genomic MortensenS_xxxx__WK055-2-G-48h-05G7_S113__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus sicerae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK055-2-L-48h-04F5_S21__bin.2 70.55659437 1.111605841 566 1742284 41.02 3272 SAMN37604744 SRR26215795 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic MortensenS_xxxx__WK055-2-L-48h-04F5_S21__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK055-2-L-48h-04F5_S21__bin.3 98.95287958 1.047120419 245 2477155 36.9 16501 SAMN37604744 SRR26215795 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-1-L-08h-04F6_S22__bin.6 98.00724638 0.425724638 204 2783079 46.64 19141 SAMN37604745 SRR26215794 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-1-L-08h-04F6_S22__bin.4 87.09619918 1.247771836 348 1602861 40.51 5800 SAMN37604745 SRR26215794 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_004102045.2_ASM410204v2_genomic MortensenS_xxxx__WK055-2-G-48h-05G7_S113__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus sicerae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-1-L-08h-04F6_S22__bin.8 95.15025678 1.467661692 122 2633889 58.47 34796 SAMN37604745 SRR26215794 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_15 MortensenS_xxxx__WK056-1-L-48h-04F7_S23__bin.9 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-1-L-08h-04F6_S22__bin.3 98.95287958 4.10122164 183 2366700 36.72 22198 SAMN37604745 SRR26215794 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-1-L-08h-04F6_S22__bin.9 93.14415824 3.980099502 75 2364455 56.51 62932 SAMN37604745 SRR26215794 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK056-2-L-08h-04F8_S24__bin.13 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-1-L-48h-04F7_S23__bin.6 55.85288149 1.234809028 684 1874548 40.67 2843 SAMN37604746 SRR26215793 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK056-1-L-48h-04F7_S23__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-1-L-48h-04F7_S23__bin.1 95.45454545 0.980392157 256 1552464 40.65 7811 SAMN37604746 SRR26215793 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_004102045.2_ASM410204v2_genomic MortensenS_xxxx__WK055-2-G-48h-05G7_S113__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus sicerae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-1-L-48h-04F7_S23__bin.9 97.37301396 0.746268657 140 2634885 58.54 28509 SAMN37604746 SRR26215793 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_15 MortensenS_xxxx__WK056-1-L-48h-04F7_S23__bin.9 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-1-L-48h-04F7_S23__bin.8 96.85863874 0 379 2269697 37.04 8293 SAMN37604746 SRR26215793 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-1-L-48h-04F7_S23__bin.7 92.43781095 0.542740841 573 2854132 60.1 6323 SAMN37604746 SRR26215793 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. OlgaP_2019__SRR11910536__bin.9 MortensenS_xxxx__WK056-1-L-48h-04F7_S23__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Novacetimonas Novacetimonas hansenii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-1-L-48h-04F7_S23__bin.4 91.651620930000007 1.119402985 68 2177584 56.62 67182 SAMN37604746 SRR26215793 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK056-2-L-08h-04F8_S24__bin.13 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-2-G-48h-05G8_S114__bin.4 98.125 1.71875 150 3170915 40.02 35497 SAMN37604747 SRR26215792 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-2-G-48h-05G8_S114__bin.3 96.33152174 0 95 2787359 46.4 41340 SAMN37604747 SRR26215792 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-2-G-48h-05G8_S114__bin.5 97.32620321 0.178253119 94 1564551 40.23 32331 SAMN37604747 SRR26215792 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_004102045.2_ASM410204v2_genomic MortensenS_xxxx__WK055-2-G-48h-05G7_S113__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus sicerae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-2-G-48h-05G8_S114__bin.7 99.47643979 0.523560209 123 2506186 40.26 35637 SAMN37604747 SRR26215792 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-2-G-48h-05G8_S114__bin.6 99.47643979 0 102 2504359 36.61 60120 SAMN37604747 SRR26215792 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-2-G-48h-05G8_S114__bin.8 70.84639498 1.724137931 513 2027175 37.69 4641 SAMN37604747 SRR26215792 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 MortensenS_xxxx__WK055-2-G-48h-05G7_S113__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus ghanensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-2-L-08h-04F8_S24__bin.8 96.875 4.047619048 437 3364464 39.85 11354 SAMN37604748 SRR26215791 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-2-L-08h-04F8_S24__bin.7 94.02173913 0 120 2721491 46.49 37031 SAMN37604748 SRR26215791 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-2-L-08h-04F8_S24__bin.10 98.39572193 0.178253119 79 1646736 40.27 38680 SAMN37604748 SRR26215791 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_004102045.2_ASM410204v2_genomic MortensenS_xxxx__WK055-2-G-48h-05G7_S113__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus sicerae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-2-L-08h-04F8_S24__bin.14 97.38219895 0.523560209 180 2258499 40.52 20073 SAMN37604748 SRR26215791 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-2-L-08h-04F8_S24__bin.13 95.02487562 1.259829883 55 2246788 56.46 69905 SAMN37604748 SRR26215791 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK056-2-L-08h-04F8_S24__bin.13 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-2-L-08h-04F8_S24__bin.9 90.05235602 0 44 1676628 36.47 98649 SAMN37604748 SRR26215791 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-2-L-08h-04F8_S24__bin.4 57.9153605 0 515 1870390 58.8 3985 SAMN37604748 SRR26215791 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_15 MortensenS_xxxx__WK056-1-L-48h-04F7_S23__bin.9 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-2-L-08h-04F8_S24__bin.6 64.8 1.5 2525 7766012 38.95 3329 SAMN37604748 SRR26215791 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK056-2-L-08h-04F8_S24__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-2-L-48h-04F9_S25__bin.8 81.73660714 1.822916667 676 2628419 40.53 4361 SAMN37604749 SRR26215789 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-2-L-48h-04F9_S25__bin.4 84.31912449 0.706283371 531 2349075 46.68 5361 SAMN37604749 SRR26215789 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-2-L-48h-04F9_S25__bin.5 96.25668449 0.178253119 35 1447726 40.4 69634 SAMN37604749 SRR26215789 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_004102045.2_ASM410204v2_genomic MortensenS_xxxx__WK055-2-G-48h-05G7_S113__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus sicerae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-2-L-48h-04F9_S25__bin.2 86.64921466 1.356496906 490 2104450 40.69 5204 SAMN37604749 SRR26215789 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-2-L-48h-04F9_S25__bin.6 96.12923287 2.611940299 79 2351546 56.37 50128 SAMN37604749 SRR26215789 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK056-2-L-08h-04F8_S24__bin.13 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-2-L-48h-04F9_S25__bin.1 95.63172043 0.845771144 134 2539626 58.62 30699 SAMN37604749 SRR26215789 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_15 MortensenS_xxxx__WK056-1-L-48h-04F7_S23__bin.9 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK056-2-L-48h-04F9_S25__bin.3 99.47643979 2.617801047 270 2499719 36.95 14531 SAMN37604749 SRR26215789 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK057-1-L-08h-04G1_S26__bin.1 92.14659686 1.047120419 21 1835044 37.1 160312 SAMN37604750 SRR26215788 Norway PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 MortensenS_xxxx__WK039-2-L-48h-03E9_S64__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus ghanensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK057-1-L-08h-04G1_S26__bin.3 98 0.2 655 10563401 40.98 23741 SAMN37604750 SRR26215788 Norway PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygotorulaspora Zygotorulaspora florentina tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK057-1-L-48h-04G2_S27__bin.6 96.51741294 1.160862355 216 2876632 61.3 21256 SAMN37604751 SRR26215787 Norway PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967701__bin.5 MortensenS_xxxx__WK057-1-L-48h-04G2_S27__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter oxydans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK057-1-L-48h-04G2_S27__bin.2 99.47643979 1.047120419 68 2648694 36.93 81178 SAMN37604751 SRR26215787 Norway PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 MortensenS_xxxx__WK039-2-L-48h-03E9_S64__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus ghanensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK057-1-L-48h-04G2_S27__bin.3 95.28795812 1.308900524 317 2930092 53.67 12989 SAMN37604751 SRR26215787 Norway PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic MortensenS_xxxx__WK057-1-L-48h-04G2_S27__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK057-1-L-48h-04G2_S27__bin.5 66.66666667 1.724137931 625 1684062 59.39 2823 SAMN37604751 SRR26215787 Norway PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK058-1-L-48h-04G6_S31__bin.6 MortensenS_xxxx__WK057-1-L-48h-04G2_S27__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter persici tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK057-1-L-48h-04G2_S27__bin.1 98.9 0.1 489 10697737 40.99 37082 SAMN37604751 SRR26215787 Norway PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygotorulaspora Zygotorulaspora florentina tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK057-2-G-48h-05G9_S115__bin.6 95 1.036458333 425 3026814 40.18 9569 SAMN37604752 SRR26215786 Norway PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK057-2-G-48h-05G9_S115__bin.5 93.27994771 1.246980676 357 2641241 46.6 10739 SAMN37604752 SRR26215786 Norway PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK057-2-G-48h-05G9_S115__bin.7 99.21465969 1.047120419 91 2557804 37.09 50882 SAMN37604752 SRR26215786 Norway PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 MortensenS_xxxx__WK039-2-L-48h-03E9_S64__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus ghanensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK057-2-L-08h-04G3_S28__bin.1 81.67539267 0.523560209 14 1683059 36.99 233064 SAMN37604753 SRR26215785 Norway PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 MortensenS_xxxx__WK039-2-L-48h-03E9_S64__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus ghanensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK057-2-L-08h-04G3_S28__bin.3 65.5 2.3 2511 8179085 38.67 3558 SAMN37604753 SRR26215785 Norway PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK057-2-L-08h-04G3_S28__bin.3 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK057-2-L-08h-04G3_S28__bin.5 97.1 1.2 865 10646194 41 19270 SAMN37604753 SRR26215785 Norway PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygotorulaspora Zygotorulaspora florentina tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK057-2-L-48h-04G4_S29__bin.2 98.28804348 0.036231884 180 2891686 46.31 23837 SAMN37604754 SRR26215784 Norway PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK057-2-L-48h-04G4_S29__bin.4 99.47643979 1.047120419 30 2452696 37.19 124425 SAMN37604754 SRR26215784 Norway PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3 MortensenS_xxxx__WK039-2-L-48h-03E9_S64__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus ghanensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK057-2-L-48h-04G4_S29__bin.6 84.05360332 2.19895288 449 2854225 53.48 8980 SAMN37604754 SRR26215784 Norway PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic MortensenS_xxxx__WK057-1-L-48h-04G2_S27__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK057-2-L-48h-04G4_S29__bin.5 81.96122272 1.907131012 675 2504688 61.2 4234 SAMN37604754 SRR26215784 Norway PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967701__bin.5 MortensenS_xxxx__WK057-1-L-48h-04G2_S27__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter oxydans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK057-2-L-48h-04G4_S29__bin.3 60.34482759 0 472 1770752 56.53 4437 SAMN37604754 SRR26215784 Norway PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK056-2-L-08h-04F8_S24__bin.13 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK057-2-L-48h-04G4_S29__bin.1 99.2 0.2 374 10716257 40.97 51955 SAMN37604754 SRR26215784 Norway PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygotorulaspora Zygotorulaspora florentina tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK058-1-L-08h-04G5_S30__bin.4 98.7109905 0 144 2491878 58.71 29090 SAMN37604755 SRR26215783 South Africa PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lovaniensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK058-1-L-08h-04G5_S30__bin.1 79.33156189 2.835820896 557 2393552 59.04 5219 SAMN37604755 SRR26215783 South Africa PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK058-1-L-48h-04G6_S31__bin.6 MortensenS_xxxx__WK058-1-L-48h-04G6_S31__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter persici tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK058-1-L-08h-04G5_S30__bin.3 95.1 0.1 933 9555801 42.21 15319 SAMN37604755 SRR26215783 South Africa PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-08h-03F3_S67__bin.4 MortensenS_xxxx__WK040-2-L-08h-03F3_S67__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Lachancea Lachancea fermentati tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK058-1-L-08h-04G5_S30__bin.5 97.8 2.1 902 11175668 38.25 18876 SAMN37604755 SRR26215783 South Africa PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK058-1-L-48h-04G6_S31__bin.6 99.50248756 0.497512438 86 2993427 58.62 52334 SAMN37604756 SRR26215782 South Africa PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK058-1-L-48h-04G6_S31__bin.6 MortensenS_xxxx__WK058-1-L-48h-04G6_S31__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter persici tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK058-1-L-48h-04G6_S31__bin.5 90.96119929 0 380 1739781 39.57 5668 SAMN37604756 SRR26215782 South Africa PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK058-2-L-48h-04G8_S33__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK058-1-L-48h-04G6_S31__bin.1 96.51741294 0 44 2525272 58.58 104874 SAMN37604756 SRR26215782 South Africa PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lovaniensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK058-1-L-48h-04G6_S31__bin.7 80.80715532 2.094240838 487 1890214 40.96 4591 SAMN37604756 SRR26215782 South Africa PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic MortensenS_xxxx__WK058-1-L-48h-04G6_S31__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK058-1-L-48h-04G6_S31__bin.3 93.05947657 0 404 3144865 61.12 10551 SAMN37604756 SRR26215782 South Africa PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967701__bin.5 MortensenS_xxxx__WK058-1-L-48h-04G6_S31__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter oxydans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK058-1-L-48h-04G6_S31__bin.4 82.8 1.9 2470 9669263 38.67 4559 SAMN37604756 SRR26215782 South Africa PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK058-2-G-48h-05H1_S116__bin.2 97.38219895 1.047120419 143 2274179 40.39 26776 SAMN37604757 SRR26215781 South Africa PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK058-2-G-48h-05H1_S116__bin.1 100 0 40 1961559 46.23 107679 SAMN37604757 SRR26215781 South Africa PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK058-2-G-48h-05H1_S116__bin.1 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK058-2-G-48h-05H1_S116__bin.3 95.4 2.1 1665 10763670 38.36 8515 SAMN37604757 SRR26215781 South Africa PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK058-2-L-08h-04G7_S32__bin.1 97.70723104 0.529100529 219 1967677 39.1 14619 SAMN37604758 SRR26215780 South Africa PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK058-2-L-48h-04G8_S33__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK058-2-L-08h-04G7_S32__bin.5 98.25870647 0.497512438 144 2538365 58.54 26459 SAMN37604758 SRR26215780 South Africa PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lovaniensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK058-2-L-08h-04G7_S32__bin.2 88.48167539 0 69 1399783 40.27 31313 SAMN37604758 SRR26215780 South Africa PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK058-2-L-08h-04G7_S32__bin.3 100 0 99 1917814 46.44 28341 SAMN37604758 SRR26215780 South Africa PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK058-2-G-48h-05H1_S116__bin.1 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK058-2-L-08h-04G7_S32__bin.6 91.8 0.1 1122 9149578 41.97 11236 SAMN37604758 SRR26215780 South Africa PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-08h-03F3_S67__bin.4 MortensenS_xxxx__WK040-2-L-08h-03F3_S67__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Lachancea Lachancea fermentati tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK058-2-L-08h-04G7_S32__bin.8 97.4 2.3 900 11249471 38.25 18879 SAMN37604758 SRR26215780 South Africa PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK058-2-L-48h-04G8_S33__bin.3 99.75124378 0 70 2933039 57.87 74872 SAMN37604759 SRR26216028 South Africa PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lovaniensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK058-2-L-48h-04G8_S33__bin.10 99.82363316 0.529100529 157 2231247 38.82 27906 SAMN37604759 SRR26216028 South Africa PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK023-1-L-48h-02G3_S117__bin.1 MortensenS_xxxx__WK058-2-L-48h-04G8_S33__bin.10 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc pseudomesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK058-2-L-48h-04G8_S33__bin.7 97.64397906 0.523560209 265 2313304 40.45 11551 SAMN37604759 SRR26216028 South Africa PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK058-2-L-48h-04G8_S33__bin.6 93.31882255 0.542740841 316 2785480 58.96 11948 SAMN37604759 SRR26216028 South Africa PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK058-1-L-48h-04G6_S31__bin.6 MortensenS_xxxx__WK058-1-L-48h-04G6_S31__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter persici tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK058-2-L-48h-04G8_S33__bin.1 98.19004525 0 129 1891577 46.47 23170 SAMN37604759 SRR26216028 South Africa PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2 MortensenS_xxxx__WK058-2-G-48h-05H1_S116__bin.1 Pseudomonadota;Alphaproteobacteria;Sphingomonadales;Sphingomonadaceae;Zymomonas Zymomonas mobilis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK059-1-L-08h-04G9_S34__bin.1 98.95287958 0.785340314 131 2441474 36.01 40230 SAMN37604760 SRR26216027 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus sp030400225 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK059-1-L-08h-04G9_S34__bin.5 56.89655172 0 37 1211721 46.81 47974 SAMN37604760 SRR26216027 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK059-1-L-08h-04G9_S34__bin.2 94.11764706 0.980392157 164 1613522 43.11 15554 SAMN37604760 SRR26216027 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK059-1-L-08h-04G9_S34__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK059-1-L-08h-04G9_S34__bin.6 75.62386625 0.497512438 635 2475385 61.29 4452 SAMN37604760 SRR26216027 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967701__bin.5 MortensenS_xxxx__WK059-1-L-08h-04G9_S34__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter oxydans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK059-1-L-08h-04G9_S34__bin.7 97.4 0.1 778 10470644 41.01 21264 SAMN37604760 SRR26216027 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygotorulaspora Zygotorulaspora florentina tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK059-1-L-08h-04G9_S34__bin.9 96.1 2.3 1260 11365649 38.31 13054 SAMN37604760 SRR26216027 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK059-1-L-48h-04H1_S35__bin.1 98.36956522 0.18115942 123 2546129 46.65 33392 SAMN37604761 SRR26216026 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK059-1-L-48h-04H1_S35__bin.10 87.95811518 0.654450262 502 1883871 37.06 4364 SAMN37604761 SRR26216026 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus sp030400225 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK059-1-L-48h-04H1_S35__bin.7 94.67906679 4.353233831 454 2416115 53.17 6657 SAMN37604761 SRR26216026 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK059-1-L-48h-04H1_S35__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK059-1-L-48h-04H1_S35__bin.3 92.96962159 3.668242366 593 3060516 60.98 6333 SAMN37604761 SRR26216026 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967701__bin.5 LeechJ_2020__ERS3967701__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter oxydans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK059-1-L-48h-04H1_S35__bin.5 94.78609626 1.604278075 155 1641731 43.2 15939 SAMN37604761 SRR26216026 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK059-1-L-08h-04G9_S34__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK059-2-G-48h-05H2_S117__bin.2 99.375 0.3125 70 3033696 39.97 61899 SAMN37604762 SRR26216025 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK059-2-G-48h-05H2_S117__bin.5 97.55434783 0.724637681 115 2538217 46.59 31736 SAMN37604762 SRR26216025 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK059-2-G-48h-05H2_S117__bin.3 94.2408377 0 355 2361170 36.39 8805 SAMN37604762 SRR26216025 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus sp030400225 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK059-2-G-48h-05H2_S117__bin.1 97.90575916 1.570680628 199 2200755 40.62 17275 SAMN37604762 SRR26216025 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK059-2-G-48h-05H2_S117__bin.4 56 0.9 2079 6903552 40.75 3657 SAMN37604762 SRR26216025 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 MortensenS_xxxx__WK059-2-G-48h-05H2_S117__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygotorulaspora Zygotorulaspora florentina tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK059-2-G-48h-05H2_S117__bin.6 86.9 2.5 2129 10300571 38.39 5893 SAMN37604762 SRR26216025 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.5 83.4421503 4.021103896 589 2691338 40.38 5370 SAMN37604763 SRR26216024 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.1 95.51630435 0.18115942 93 2518212 46.55 41007 SAMN37604763 SRR26216024 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 98.95287958 0.261780105 74 2300903 36.18 54829 SAMN37604763 SRR26216024 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus sp030400225 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.7 86.05164975 2.790069245 426 1841310 40.93 5324 SAMN37604763 SRR26216024 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.2 78.34751256 0.534759358 286 1301974 43.4 5544 SAMN37604763 SRR26216024 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK059-1-L-08h-04G9_S34__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.3 96.7 0.6 873 10378859 41.02 17564 SAMN37604763 SRR26216024 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygotorulaspora Zygotorulaspora florentina tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.6 94.1 2 1506 11128056 38.32 10149 SAMN37604763 SRR26216024 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK059-2-L-48h-04H3_S37__bin.9 97.69021739 0.18115942 112 2522502 46.62 34705 SAMN37604764 SRR26216023 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK059-2-L-48h-04H3_S37__bin.4 86.2390925 2.356020942 478 1753728 37.29 4282 SAMN37604764 SRR26216023 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus sp030400225 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK059-2-L-48h-04H3_S37__bin.10 69.6283004 1.933794967 470 1453974 41.42 3308 SAMN37604764 SRR26216023 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK059-2-L-48h-04H3_S37__bin.2 92.00870647 2.985074627 479 2341373 53.31 6082 SAMN37604764 SRR26216023 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK059-2-L-48h-04H3_S37__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK059-2-L-48h-04H3_S37__bin.5 91.75558787 1.336898396 249 1519311 43.35 8121 SAMN37604764 SRR26216023 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK059-1-L-08h-04G9_S34__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK059-2-L-48h-04H3_S37__bin.8 81.29090009 3.814262023 625 2858336 55.92 5442 SAMN37604764 SRR26216023 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK059-2-L-48h-04H3_S37__bin.8 MortensenS_xxxx__WK059-2-L-48h-04H3_S37__bin.8 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter_A Gluconobacter A oxydans A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK060-1-L-08h-04H4_S38__bin.6 84.828125 0.625 516 2571165 40.38 6135 SAMN37604765 SRR26216022 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK060-1-L-08h-04H4_S38__bin.1 69.29347826 0 74 1661284 46.75 35192 SAMN37604765 SRR26216022 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK060-1-L-08h-04H4_S38__bin.7 70.64676617 0 36 1645328 61.05 71981 SAMN37604765 SRR26216022 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967701__bin.5 MortensenS_xxxx__WK060-2-L-08h-04H6_S40__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter oxydans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK060-1-L-08h-04H4_S38__bin.5 67.29166667 0 33 895488 39.23 34842 SAMN37604765 SRR26216022 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK060-1-L-08h-04H4_S38__bin.2 96.9 2.1 967 11111893 38.24 17208 SAMN37604765 SRR26216022 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK060-1-L-48h-04H5_S39__bin.6 100 0.995024876 90 3236340 60.86 62745 SAMN37604766 SRR26216021 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967701__bin.5 MortensenS_xxxx__WK060-2-L-08h-04H6_S40__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter oxydans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK060-1-L-48h-04H5_S39__bin.2 99.0625 0.3125 107 3079905 39.98 40168 SAMN37604766 SRR26216021 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK060-1-L-48h-04H5_S39__bin.4 99.18478261 0 145 2898650 46.36 32186 SAMN37604766 SRR26216021 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK060-1-L-48h-04H5_S39__bin.1 64.57462652 1.570680628 552 2246531 53.75 4523 SAMN37604766 SRR26216021 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_008694105.1_ASM869410v1_genomic MortensenS_xxxx__WK057-1-L-48h-04G2_S27__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus harbinensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK060-1-L-48h-04H5_S39__bin.7 94.5 1.9 1630 10757135 38.35 8620 SAMN37604766 SRR26216021 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK060-2-G-48h-05H3_S118__bin.1 89.89583333 0.9375 171 2908262 39.97 29768 SAMN37604767 SRR26216020 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK060-2-G-48h-05H3_S118__bin.2 99.32065217 0.543478261 136 2873987 46.36 36429 SAMN37604767 SRR26216020 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK060-2-G-48h-05H3_S118__bin.5 65.86387435 2.520689073 483 1621144 40.78 3650 SAMN37604767 SRR26216020 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic MortensenS_xxxx__WK060-2-G-48h-05H3_S118__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK060-2-G-48h-05H3_S118__bin.3 87.2 1.6 2205 9984917 38.47 5515 SAMN37604767 SRR26216020 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK060-2-L-08h-04H6_S40__bin.5 99.26175574 0.165837479 177 3158846 60.86 31924 SAMN37604768 SRR26216019 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967701__bin.5 MortensenS_xxxx__WK060-2-L-08h-04H6_S40__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter oxydans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK060-2-L-08h-04H6_S40__bin.1 84.0625 0 42 1096292 38.97 34745 SAMN37604768 SRR26216019 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK060-2-L-08h-04H6_S40__bin.9 92.93055556 0 357 2766642 40.28 11063 SAMN37604768 SRR26216019 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK060-2-L-08h-04H6_S40__bin.6 92.107674 3.731343284 437 2632092 59.18 7854 SAMN37604768 SRR26216019 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK058-1-L-48h-04G6_S31__bin.6 MortensenS_xxxx__WK060-2-L-48h-04H7_S41__bin.8 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter persici tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK060-2-L-08h-04H6_S40__bin.7 72.69021739 0 60 1721208 46.69 40050 SAMN37604768 SRR26216019 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK060-2-L-08h-04H6_S40__bin.2 98 2 846 11170114 38.22 21094 SAMN37604768 SRR26216019 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK060-2-L-48h-04H7_S41__bin.4 99.0625 0.625 118 3065484 39.92 41017 SAMN37604769 SRR26216017 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK060-2-L-48h-04H7_S41__bin.2 98.05253623 0.27173913 120 2729272 46.57 33401 SAMN37604769 SRR26216017 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK060-2-L-48h-04H7_S41__bin.3 50.3851461 0.989583333 554 1431457 40.42 2600 SAMN37604769 SRR26216017 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 MortensenS_xxxx__WK060-2-L-48h-04H7_S41__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK060-2-L-48h-04H7_S41__bin.8 98.56965174 1.492537313 232 2889451 58.76 18861 SAMN37604769 SRR26216017 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK058-1-L-48h-04G6_S31__bin.6 MortensenS_xxxx__WK060-2-L-48h-04H7_S41__bin.8 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter persici tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK060-2-L-48h-04H7_S41__bin.1 98.00995025 0.497512438 232 3276783 60.52 22241 SAMN37604769 SRR26216017 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967701__bin.5 MortensenS_xxxx__WK060-2-L-08h-04H6_S40__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter oxydans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK060-2-L-48h-04H7_S41__bin.6 55.22192453 0.101334234 447 1303978 40.94 3073 SAMN37604769 SRR26216017 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic MortensenS_xxxx__WK060-2-L-48h-04H7_S41__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK060-2-L-48h-04H7_S41__bin.5 86.4 1.5 2270 9838342 38.48 5137 SAMN37604769 SRR26216017 Austria PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK061-1-L-08h-04H8_S42__bin.1 91.62303665 0 40 1797895 40.2 94152 SAMN37604770 SRR26216016 Belgium PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK061-1-L-08h-04H8_S42__bin.5 58.74686717 1.041666667 551 1639401 65.17 3131 SAMN37604770 SRR26216016 Belgium PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK061-2-G-48h-05H4_S119__bin.2 MortensenS_xxxx__WK061-2-G-48h-05H4_S119__bin.2 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK061-1-L-48h-04H9_S43__bin.5 99.47643979 0.523560209 50 2445473 40.12 85664 SAMN37604771 SRR26216015 Belgium PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK061-2-G-48h-05H4_S119__bin.1 99.47643979 0.523560209 49 2440183 40.13 88769 SAMN37604772 SRR26216014 Belgium PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK061-2-G-48h-05H4_S119__bin.2 96.68859649 0.493421053 139 2538420 64.92 28423 SAMN37604772 SRR26216014 Belgium PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK061-2-G-48h-05H4_S119__bin.2 MortensenS_xxxx__WK061-2-G-48h-05H4_S119__bin.2 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK061-2-L-08h-04I1_S44__bin.8 95.50438596 0.328947368 175 2523630 65.1 21633 SAMN37604773 SRR26216013 Belgium PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK061-2-G-48h-05H4_S119__bin.2 MortensenS_xxxx__WK061-2-G-48h-05H4_S119__bin.2 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK061-2-L-48h-04I2_S45__bin.4 99.47643979 0.523560209 55 2444020 40.13 79535 SAMN37604774 SRR26216012 Belgium PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK061-2-L-48h-04I2_S45__bin.2 77.68072516 1.741293532 539 2025175 53.12 4361 SAMN37604774 SRR26216012 Belgium PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK046-2-L-48h-03I1_S92__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK062-1-L-08h-04I3_S46__bin.9 96.28623188 0.706521739 147 2869640 46.33 26695 SAMN37604775 SRR26216011 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK062-1-L-08h-04I3_S46__bin.1 98.82575758 2.96969697 59 2308947 52.16 65805 SAMN37604775 SRR26216011 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK062-1-L-08h-04I3_S46__bin.7 95.28795812 0.17452007 126 2495124 35.84 46306 SAMN37604775 SRR26216011 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus sp030400225 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK062-1-L-08h-04I3_S46__bin.5 96.61319073 0.534759358 59 1691899 42.86 59709 SAMN37604775 SRR26216011 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK062-2-L-48h-04I6_S49__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.4 89.87613788 0.952517162 391 2581488 46.52 9436 SAMN37604776 SRR26216010 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.2 98.82575758 2.878787879 58 2309707 52.14 69158 SAMN37604776 SRR26216010 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.6 59.9585195 0.574227326 493 1388192 37.68 2889 SAMN37604776 SRR26216010 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus sp030400225 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.3 95.5061082 0.745676662 467 2233869 37.17 5576 SAMN37604776 SRR26216010 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.7 73.95343663 2.187984807 731 2552555 60.74 3875 SAMN37604776 SRR26216010 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967728__bin.8 MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter sp937880175 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.2 96.39498433 3.448275862 342 2681271 46.66 10729 SAMN37604777 SRR26216009 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 98 0.15625 387 2913660 40.19 10445 SAMN37604777 SRR26216009 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.6 98.72474747 2.878787879 40 2271193 52.11 84645 SAMN37604777 SRR26216009 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.5 98.2547993 2.02443281 313 2345810 36.71 11077 SAMN37604777 SRR26216009 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.4 90.26737968 1.604278075 181 1651077 43.06 13619 SAMN37604777 SRR26216009 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK062-2-L-48h-04I6_S49__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.1 60.4 1.3 3016 9296485 38.3 3318 SAMN37604777 SRR26216009 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK062-2-L-08h-04I5_S48__bin.1 86.98664651 1.058201058 426 1556062 38.4 4026 SAMN37604778 SRR26216008 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MortensenS_xxxx__WK062-2-L-08h-04I5_S48__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK062-2-L-08h-04I5_S48__bin.7 52.74107143 2.455357143 634 2027872 40.69 3386 SAMN37604778 SRR26216008 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 MortensenS_xxxx__WK062-2-L-08h-04I5_S48__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK062-2-L-08h-04I5_S48__bin.6 97.46212121 2.878787879 47 2258499 52.28 67949 SAMN37604778 SRR26216008 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK062-2-L-08h-04I5_S48__bin.4 97.21925134 0.534759358 105 1663869 43.02 26570 SAMN37604778 SRR26216008 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK062-2-L-48h-04I6_S49__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK062-2-L-48h-04I6_S49__bin.1 82.20515446 0.705467372 379 1382620 38.63 4190 SAMN37604779 SRR26216006 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MortensenS_xxxx__WK054-2-L-08h-04E9_S16__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK062-2-L-48h-04I6_S49__bin.10 98.82575758 3.121212121 56 2314551 52.12 70063 SAMN37604779 SRR26216006 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK062-2-L-48h-04I6_S49__bin.2 85.84642234 4.031413613 556 2033757 37.35 4121 SAMN37604779 SRR26216006 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK062-2-L-48h-04I6_S49__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK062-2-L-48h-04I6_S49__bin.5 97.86096257 0.534759358 15 1754872 42.75 246393 SAMN37604779 SRR26216006 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6 MortensenS_xxxx__WK062-2-L-48h-04I6_S49__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus kitaharae A tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK062-2-L-48h-04I6_S49__bin.7 62.7 0.2 2242 8268219 43.52 4224 SAMN37604779 SRR26216006 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK038-1-L-48h-03E3_S58__bin.1 MortensenS_xxxx__WK062-2-L-48h-04I6_S49__bin.7 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia membranifaciens group 1 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK063-1-L-08h-04I7_S50__bin.3 98.91304348 0 114 2811428 46.51 35086 SAMN37604780 SRR26216005 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK063-1-L-08h-04I7_S50__bin.4 99.47643979 1.047120419 105 2370263 40.29 36642 SAMN37604780 SRR26216005 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK063-1-L-08h-04I7_S50__bin.2 65.56545014 0.785340314 605 2223802 49 4069 SAMN37604780 SRR26216005 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK063-2-L-48h-05A1_S53__bin.2 MortensenS_xxxx__WK063-2-L-48h-05A1_S53__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus perolens tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK063-1-L-08h-04I7_S50__bin.1 94.6 2.3 1593 10923195 38.36 9295 SAMN37604780 SRR26216005 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK063-1-L-48h-04I8_S51__bin.3 99.00497512 0.497512438 75 3173672 60.81 66812 SAMN37604781 SRR26216004 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_275_3_oxydans_assembly MortensenS_xxxx__WK002-2-L-08h-01F7_S31__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter potus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK063-1-L-48h-04I8_S51__bin.4 98.91304348 0 113 2699330 46.6 32709 SAMN37604781 SRR26216004 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK063-1-L-48h-04I8_S51__bin.5 99.47643979 1.047120419 95 2431917 40.16 45982 SAMN37604781 SRR26216004 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK063-1-L-48h-04I8_S51__bin.2 89.40116293 1.020942408 516 2803233 49.02 7005 SAMN37604781 SRR26216004 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK063-2-L-48h-05A1_S53__bin.2 MortensenS_xxxx__WK063-2-L-48h-05A1_S53__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus perolens tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK063-1-L-48h-04I8_S51__bin.7 91.4 2.2 2096 10670230 38.46 6327 SAMN37604781 SRR26216004 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK063-2-G-48h-05H6_S121__bin.3 97.14464883 1.086956522 296 2619219 46.58 12340 SAMN37604782 SRR26216003 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK063-2-G-48h-05H6_S121__bin.1 98.95287958 1.047120419 85 2392552 40.17 49375 SAMN37604782 SRR26216003 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK063-2-G-48h-05H6_S121__bin.2 94 2.2 1637 10769251 38.33 8766 SAMN37604782 SRR26216003 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK063-2-L-08h-04I9_S52__bin.5 98.95287958 1.047120419 83 2423096 40.15 51289 SAMN37604783 SRR26215918 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK063-2-L-08h-04I9_S52__bin.1 88.04347826 0 70 2215187 46.79 48387 SAMN37604783 SRR26215918 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK063-2-L-08h-04I9_S52__bin.4 97.38219895 1.047120419 96 2941378 49.13 49851 SAMN37604783 SRR26215918 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK063-2-L-48h-05A1_S53__bin.2 MortensenS_xxxx__WK063-2-L-48h-05A1_S53__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus perolens tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK063-2-L-08h-04I9_S52__bin.3 92.8 1.9 1766 10748273 38.38 8046 SAMN37604783 SRR26215918 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK063-2-L-48h-05A1_S53__bin.8 99.75124378 0.746268657 157 2619043 58.61 27503 SAMN37604784 SRR26215917 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_15 MortensenS_xxxx__WK063-2-L-48h-05A1_S53__bin.8 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter fabarum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK063-2-L-48h-05A1_S53__bin.5 99.50248756 0.248756219 99 3209486 60.74 62892 SAMN37604784 SRR26215917 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_275_3_oxydans_assembly MortensenS_xxxx__WK002-2-L-08h-01F7_S31__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter potus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK063-2-L-48h-05A1_S53__bin.3 98.36956522 0 119 2710024 46.47 37982 SAMN37604784 SRR26215917 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK063-2-L-48h-05A1_S53__bin.9 98.95287958 1.047120419 93 2420849 40.15 41065 SAMN37604784 SRR26215917 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK063-2-L-48h-05A1_S53__bin.7 72.4137931 0 366 2344223 53.08 8793 SAMN37604784 SRR26215917 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK036-1-L-48h-03D4_S50__bin.7 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK063-2-L-48h-05A1_S53__bin.2 98.69109948 0.523560209 146 3004696 49.16 33185 SAMN37604784 SRR26215917 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK063-2-L-48h-05A1_S53__bin.2 MortensenS_xxxx__WK063-2-L-48h-05A1_S53__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Schleiferilactobacillus Schleiferilactobacillus perolens tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK063-2-L-48h-05A1_S53__bin.6 88.5 1.9 2186 10226855 38.45 5675 SAMN37604784 SRR26215917 Canada PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-1-L-08h-05A2_S54__bin.12 93.72810161 0.407608696 387 2745366 46.54 9851 SAMN37604785 SRR26215916 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-1-L-08h-05A2_S54__bin.10 96.10678211 3.159090909 169 2282319 52.24 21148 SAMN37604785 SRR26215916 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-1-L-08h-05A2_S54__bin.4 97.86096257 1.296386323 148 1559319 40.44 16615 SAMN37604785 SRR26215916 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_004102045.2_ASM410204v2_genomic MortensenS_xxxx__WK055-2-G-48h-05G7_S113__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus sicerae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-1-L-08h-05A2_S54__bin.7 94.76439791 1.134380454 97 1968302 40.59 37442 SAMN37604785 SRR26215916 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-1-L-08h-05A2_S54__bin.3 70.67398119 0 554 2277139 60.04 4886 SAMN37604785 SRR26215916 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.6 MortensenS_xxxx__WK064-1-L-48h-05A3_S55__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter papayae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-1-L-08h-05A2_S54__bin.14 52.06896552 0 90 1365562 56.02 22207 SAMN37604785 SRR26215916 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4 MortensenS_xxxx__WK064-1-L-08h-05A2_S54__bin.14 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter syzygii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-1-L-08h-05A2_S54__bin.6 50.39048404 1.243781095 886 2735001 64.28 3291 SAMN37604785 SRR26215916 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-2-L-48h-03H6_S88__bin.5 MortensenS_xxxx__WK064-1-L-48h-05A3_S55__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconacetobacter Gluconacetobacter dulcium tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-1-L-48h-05A3_S55__bin.8 67.55971796 1.105072464 600 1882851 46.49 3294 SAMN37604786 SRR26215915 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK064-1-L-48h-05A3_S55__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-1-L-48h-05A3_S55__bin.12 94.4741533 0.178253119 178 1449182 40.62 11085 SAMN37604786 SRR26215915 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_004102045.2_ASM410204v2_genomic MortensenS_xxxx__WK055-2-G-48h-05G7_S113__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus sicerae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-1-L-48h-05A3_S55__bin.6 93.65404162 1.741293532 223 2665630 58.48 20853 SAMN37604786 SRR26215915 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK064-2-L-48h-05A5_S57__bin.10 MortensenS_xxxx__WK064-2-L-48h-05A5_S57__bin.10 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-1-L-48h-05A3_S55__bin.4 82.63525305 2.094240838 485 1532015 38.02 3469 SAMN37604786 SRR26215915 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK064-1-L-48h-05A3_S55__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-1-L-48h-05A3_S55__bin.2 92.33770663 4.647218453 385 2477673 58.68 8689 SAMN37604786 SRR26215915 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lovaniensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-1-L-48h-05A3_S55__bin.1 91.90095466 2.985074627 443 2759127 59.78 8112 SAMN37604786 SRR26215915 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.6 MortensenS_xxxx__WK064-1-L-48h-05A3_S55__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter papayae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-1-L-48h-05A3_S55__bin.3 87.96170662 2.32172471 756 3958665 64.82 6971 SAMN37604786 SRR26215915 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-2-L-48h-03H6_S88__bin.5 MortensenS_xxxx__WK064-1-L-48h-05A3_S55__bin.3 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconacetobacter Gluconacetobacter dulcium tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-2-G-48h-05H7_S122__bin.5 74.11418316 1.300863991 601 2197674 46.59 4032 SAMN37604787 SRR26215914 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK064-2-G-48h-05H7_S122__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-2-G-48h-05H7_S122__bin.4 98.82575758 2.96969697 45 2300955 52.14 78492 SAMN37604787 SRR26215914 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-2-G-48h-05H7_S122__bin.3 98.03921569 0.178253119 168 1505493 40.62 12277 SAMN37604787 SRR26215914 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_004102045.2_ASM410204v2_genomic MortensenS_xxxx__WK055-2-G-48h-05G7_S113__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus sicerae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-2-G-48h-05H7_S122__bin.8 99.47643979 1.047120419 128 2461329 40.19 29783 SAMN37604787 SRR26215914 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-2-G-48h-05H7_S122__bin.1 93.04593819 0.523560209 519 2112142 37.24 4884 SAMN37604787 SRR26215914 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK064-2-G-48h-05H7_S122__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-2-L-08h-05A4_S56__bin.10 97.50905797 0.273169336 171 2761799 46.5 22349 SAMN37604788 SRR26215913 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-2-L-08h-05A4_S56__bin.4 85.12425595 2.743675595 735 2940456 40.46 4804 SAMN37604788 SRR26215913 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus diolivorans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-2-L-08h-05A4_S56__bin.2 96.85606061 2.96969697 44 2269098 52.09 69721 SAMN37604788 SRR26215913 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-2-L-08h-05A4_S56__bin.5 96.61319073 0.178253119 69 1520437 40.38 38682 SAMN37604788 SRR26215913 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_004102045.2_ASM410204v2_genomic MortensenS_xxxx__WK055-2-G-48h-05G7_S113__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus sicerae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-2-L-08h-05A4_S56__bin.7 99.47643979 1.047120419 98 2447137 40.07 48478 SAMN37604788 SRR26215913 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-2-L-08h-05A4_S56__bin.12 97.54878629 4.489132159 532 2595270 36.83 6789 SAMN37604788 SRR26215913 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK064-2-L-08h-05A4_S56__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-2-L-08h-05A4_S56__bin.13 91.0698949 3.741708126 509 2627358 59.92 6352 SAMN37604788 SRR26215913 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.6 MortensenS_xxxx__WK064-1-L-48h-05A3_S55__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter papayae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-2-L-08h-05A4_S56__bin.6 90.11187343 3.109452736 371 2445485 58.7 8212 SAMN37604788 SRR26215913 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lovaniensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-2-L-08h-05A4_S56__bin.8 69.48275862 0 378 2609786 58.36 9329 SAMN37604788 SRR26215913 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK064-2-L-48h-05A5_S57__bin.10 MortensenS_xxxx__WK064-2-L-48h-05A5_S57__bin.10 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-2-L-08h-05A4_S56__bin.11 58.6 1.5 2547 7295061 39.07 3039 SAMN37604788 SRR26215913 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK064-2-L-08h-05A4_S56__bin.11 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-2-L-48h-05A5_S57__bin.8 92.56074795 0.186733556 471 2764776 46.36 7207 SAMN37604789 SRR26215911 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-2-L-48h-05A5_S57__bin.5 57.2296176 2.015151515 448 1359626 51.94 3131 SAMN37604789 SRR26215911 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-2-L-48h-05A5_S57__bin.3 98.39572193 0.178253119 63 1637036 40.08 55923 SAMN37604789 SRR26215911 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_004102045.2_ASM410204v2_genomic MortensenS_xxxx__WK055-2-G-48h-05G7_S113__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus sicerae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-2-L-48h-05A5_S57__bin.2 99.47643979 1.047120419 120 2454607 40.16 31764 SAMN37604789 SRR26215911 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-2-L-48h-05A5_S57__bin.7 96.0172257 3.689883914 396 2723515 58.32 8781 SAMN37604789 SRR26215911 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter lovaniensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-2-L-48h-05A5_S57__bin.6 72.97737673 0.409559196 492 1443357 37.88 3247 SAMN37604789 SRR26215911 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK064-2-L-48h-05A5_S57__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-2-L-48h-05A5_S57__bin.10 93.36382603 1.409618574 245 2625543 58.52 16577 SAMN37604789 SRR26215911 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK064-2-L-48h-05A5_S57__bin.10 MortensenS_xxxx__WK064-2-L-48h-05A5_S57__bin.10 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-2-L-48h-05A5_S57__bin.1 66.40543365 0 585 2256286 59.63 4658 SAMN37604789 SRR26215911 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.6 MortensenS_xxxx__WK064-2-L-48h-05A5_S57__bin.1 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter papayae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-2-L-48h-05A5_S57__bin.9 66.37931034 0 523 1922330 53.06 3998 SAMN37604789 SRR26215911 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. G_514_1B_orientalis_assembly MortensenS_xxxx__WK047-1-L-48h-03I3_S94__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter orientalis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK064-2-L-48h-05A5_S57__bin.4 63.68190815 1.337064677 925 3191824 64.31 3795 SAMN37604789 SRR26215911 France PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK045-2-L-48h-03H6_S88__bin.5 MortensenS_xxxx__WK064-2-L-48h-05A5_S57__bin.4 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconacetobacter Gluconacetobacter dulcium tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK065-1-L-08h-05B1_S62__bin.2 99.47643979 1.570680628 90 2400856 40.14 56894 SAMN37604790 SRR26215910 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK065-1-L-08h-05B1_S62__bin.1 81.3 0.2 2043 10781667 42.02 6611 SAMN37604790 SRR26215910 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK065-1-L-08h-05B1_S62__bin.1 MortensenS_xxxx__WK065-1-L-08h-05B1_S62__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia fermentans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK065-1-L-48h-05B2_S63__bin.1 100 0 91 2885046 56.03 53123 SAMN37604791 SRR26215909 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_015244665.1_ASM1524466v1_genomic MortensenS_xxxx__WK065-2-L-48h-05B4_S65__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter_A Gluconobacter A japonicus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK065-1-L-48h-05B2_S63__bin.4 95.81151832 1.570680628 75 2308441 40.14 59020 SAMN37604791 SRR26215909 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK065-1-L-48h-05B2_S63__bin.2 79.4 0.4 2077 10777524 42.04 6410 SAMN37604791 SRR26215909 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK065-1-L-08h-05B1_S62__bin.1 MortensenS_xxxx__WK065-1-L-48h-05B2_S63__bin.2 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia fermentans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK065-2-G-48h-05H9_S124__bin.1 99.47643979 1.570680628 80 2380864 40.16 55323 SAMN37604792 SRR26215908 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK065-2-L-08h-05B3_S64__bin.2 99.47643979 1.570680628 86 2399282 40.15 49356 SAMN37604793 SRR26215907 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK065-2-L-08h-05B3_S64__bin.1 79.1 0.4 2129 10790271 42.03 6200 SAMN37604793 SRR26215907 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK065-1-L-08h-05B1_S62__bin.1 MortensenS_xxxx__WK065-2-L-08h-05B3_S64__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia fermentans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK065-2-L-48h-05B4_S65__bin.2 100 0 58 2785151 55.97 92068 SAMN37604794 SRR26215906 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_015244665.1_ASM1524466v1_genomic MortensenS_xxxx__WK065-2-L-48h-05B4_S65__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter_A Gluconobacter A japonicus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK065-2-L-48h-05B4_S65__bin.1 99.47643979 1.570680628 76 2385340 40.16 58632 SAMN37604794 SRR26215906 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001435195.1_ASM143519v1_genomic GCF_001435195.1_ASM143519v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus satsumensis tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK065-2-L-48h-05B4_S65__bin.4 81 0.4 2040 10764346 42.04 6672 SAMN37604794 SRR26215906 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK065-1-L-08h-05B1_S62__bin.1 MortensenS_xxxx__WK065-2-L-48h-05B4_S65__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia fermentans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK066-1-L-08h-05B5_S66__bin.1 88.7 2 2243 10574693 38.49 5814 SAMN37604795 SRR26215905 Colombia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK066-1-L-48h-05B6_S67__bin.2 83.74179323 0.497512438 576 2428363 56.22 4980 SAMN37604796 SRR26215904 Colombia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_015244665.1_ASM1524466v1_genomic MortensenS_xxxx__WK065-2-L-48h-05B4_S65__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter_A Gluconobacter A japonicus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK066-1-L-48h-05B6_S67__bin.5 94.57364341 0.775193798 506 3416076 45.58 9154 SAMN37604796 SRR26215904 Colombia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK066-2-L-48h-05B8_S69__bin.3 MortensenS_xxxx__WK066-2-L-48h-05B8_S69__bin.3 Bacillota;Bacilli;Bacillales_K;Sporolactobacillaceae;Sporolactobacillus NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK066-1-L-48h-05B6_S67__bin.4 85.1 2.2 2293 10182222 38.45 5461 SAMN37604796 SRR26215904 Colombia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK066-2-G-48h-05I1_S125__bin.2 97.6744186 1.162790698 60 3129551 45.53 88161 SAMN37604797 SRR26215903 Colombia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK066-2-L-48h-05B8_S69__bin.3 MortensenS_xxxx__WK066-2-L-48h-05B8_S69__bin.3 Bacillota;Bacilli;Bacillales_K;Sporolactobacillaceae;Sporolactobacillus NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK066-2-G-48h-05I1_S125__bin.1 97.98387097 1.612903226 338 6040943 29.38 27622 SAMN37604797 SRR26215903 Colombia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK066-2-G-48h-05I1_S125__bin.1 MortensenS_xxxx__WK066-2-G-48h-05I1_S125__bin.1 Bacillota;Clostridia;Clostridiales;Clostridiaceae;Clostridium Clostridium saccharoperbutylacetonicum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK066-2-G-48h-05I1_S125__bin.3 61.1 2.5 3410 10613689 41.92 3224 SAMN37604797 SRR26215903 Colombia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK065-1-L-08h-05B1_S62__bin.1 MortensenS_xxxx__WK066-2-G-48h-05I1_S125__bin.3 Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia Pichia fermentans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK066-2-G-48h-05I1_S125__bin.4 96.2 2.2 1155 11225870 38.23 14355 SAMN37604797 SRR26215903 Colombia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK066-2-L-08h-05B7_S68__bin.2 85.2 2.2 1669 10124591 38.13 8187 SAMN37604798 SRR26215902 Colombia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK066-2-L-48h-05B8_S69__bin.4 80.72584901 1.119402985 572 2416981 56.18 4933 SAMN37604799 SRR26215900 Colombia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_015244665.1_ASM1524466v1_genomic MortensenS_xxxx__WK065-2-L-48h-05B4_S65__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter_A Gluconobacter A japonicus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK066-2-L-48h-05B8_S69__bin.3 98.4496124 0.775193798 156 3532733 45.45 33147 SAMN37604799 SRR26215900 Colombia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK066-2-L-48h-05B8_S69__bin.3 MortensenS_xxxx__WK066-2-L-48h-05B8_S69__bin.3 Bacillota;Bacilli;Bacillales_K;Sporolactobacillaceae;Sporolactobacillus NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK066-2-L-48h-05B8_S69__bin.5 81 1.9 1997 9922538 38.18 6291 SAMN37604799 SRR26215900 Colombia PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK067-1-L-08h-05B9_S70__bin.3 96.32142857 3.636363636 219 2500554 58.94 16863 SAMN37604800 SRR26215899 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK067-2-G-48h-05I2_S126__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK067-1-L-08h-05B9_S70__bin.2 70.3 1.4 2534 8266295 38.78 3554 SAMN37604800 SRR26215899 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK067-1-L-08h-05B9_S70__bin.2 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK067-1-L-48h-05C1_S71__bin.5 100 0 41 2835988 58.24 127324 SAMN37604801 SRR26215898 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK067-1-L-48h-05C1_S71__bin.5 MortensenS_xxxx__WK067-1-L-48h-05C1_S71__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter malorum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK067-1-L-48h-05C1_S71__bin.4 91.53528545 2.379232868 575 2962161 56.04 6088 SAMN37604801 SRR26215898 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK038-2-L-48h-03E5_S60__bin.2 MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter_A Gluconobacter A cerinus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK067-1-L-48h-05C1_S71__bin.1 98.86363636 2.348484848 93 2563982 58.91 42893 SAMN37604801 SRR26215898 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK067-2-G-48h-05I2_S126__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK067-2-G-48h-05I2_S126__bin.3 79.93470418 2.689393939 450 1870165 52.34 4882 SAMN37604802 SRR26215897 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK016-2-L-48h-02D1_S88__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK067-2-G-48h-05I2_S126__bin.1 98.86363636 2.121212121 39 2559630 58.91 114376 SAMN37604802 SRR26215897 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK067-2-G-48h-05I2_S126__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK067-2-G-48h-05I2_S126__bin.5 83.1 1.9 2348 9482780 38.58 4744 SAMN37604802 SRR26215897 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK067-2-L-08h-05C2_S72__bin.2 97.95454545 2.121212121 99 2543620 58.91 36962 SAMN37604803 SRR26215896 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK067-2-G-48h-05I2_S126__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK067-2-L-08h-05C2_S72__bin.1 52.8 1.1 2411 6556587 39.06 2872 SAMN37604803 SRR26215896 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK067-2-L-08h-05C2_S72__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK067-2-L-48h-05C3_S73__bin.1 100 0.497512438 25 3055048 57.88 195579 SAMN37604804 SRR26215895 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK067-1-L-48h-05C1_S71__bin.5 MortensenS_xxxx__WK067-1-L-48h-05C1_S71__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter malorum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK067-2-L-48h-05C3_S73__bin.3 98.40909091 2.121212121 77 2556089 58.89 57840 SAMN37604804 SRR26215895 USA PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5 MortensenS_xxxx__WK067-2-G-48h-05I2_S126__bin.1 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia psychraerophila tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK068-1-L-08h-05C4_S74__bin.2 54.63483535 0.497512438 521 1582637 61.85 3236 SAMN37604805 SRR26215894 Philippines PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967701__bin.5 MortensenS_xxxx__WK068-2-L-48h-05C7_S77__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter oxydans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK068-1-L-08h-05C4_S74__bin.1 96.1 2.1 955 11246148 38.22 18867 SAMN37604805 SRR26215894 Philippines PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK068-1-L-48h-05C5_S75__bin.1 99.00497512 0 55 3108370 60.84 100791 SAMN37604806 SRR26215893 Philippines PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967701__bin.5 MortensenS_xxxx__WK068-2-L-48h-05C7_S77__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter oxydans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK068-1-L-48h-05C5_S75__bin.2 95.2 2 1004 11032066 38.23 16805 SAMN37604806 SRR26215893 Philippines PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK068-2-G-48h-05I3_S127__bin.3 82.48519349 0.802139037 332 1381270 38.79 4809 SAMN37604807 SRR26215892 Philippines PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_020510245.1_ASM2051024v1_genomic MortensenS_xxxx__WK068-2-G-48h-05I3_S127__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus oeni tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK068-2-G-48h-05I3_S127__bin.1 95.7 2 1028 11134829 38.2 16135 SAMN37604807 SRR26215892 Philippines PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK068-2-L-08h-05C6_S76__bin.3 97.36770692 0.777363184 324 2911142 61.14 14182 SAMN37604808 SRR26215891 Philippines PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967701__bin.5 MortensenS_xxxx__WK068-2-L-48h-05C7_S77__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter oxydans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK068-2-L-08h-05C6_S76__bin.2 95.8 2.2 979 11077007 38.21 17235 SAMN37604808 SRR26215891 Philippines PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK068-2-L-48h-05C7_S77__bin.2 100 0 47 3027871 60.97 112376 SAMN37604809 SRR26216001 Philippines PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967701__bin.5 MortensenS_xxxx__WK068-2-L-48h-05C7_S77__bin.2 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter oxydans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK068-2-L-48h-05C7_S77__bin.3 95.3 2.1 1027 11162893 38.22 15791 SAMN37604809 SRR26216001 Philippines PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK069-1-L-08h-05C8_S78__bin.3 75.71059432 1.033591731 549 2266050 46.41 4706 SAMN37604810 SRR26216000 China PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.2 MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.2 Bacillota;Bacilli;Bacillales_K;Sporolactobacillaceae;Sporolactobacillus NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK069-1-L-08h-05C8_S78__bin.5 73.63749435 4.568068747 802 2648278 61.02 3725 SAMN37604810 SRR26216000 China PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967701__bin.5 MortensenS_xxxx__WK069-1-L-08h-05C8_S78__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter oxydans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK069-1-L-08h-05C8_S78__bin.1 56.09237537 2.148179589 1079 2963422 31.49 2876 SAMN37604810 SRR26216000 China PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. EBC_134.5 MortensenS_xxxx__WK069-1-L-08h-05C8_S78__bin.1 Bacillota;Clostridia;Clostridiales;Clostridiaceae;Clostridium Clostridium beijerinckii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK069-1-L-08h-05C8_S78__bin.4 87.16385163 1.41896355 588 4316886 35.28 9617 SAMN37604810 SRR26216000 China PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK069-1-L-08h-05C8_S78__bin.4 MortensenS_xxxx__WK069-1-L-08h-05C8_S78__bin.4 Bacillota;Bacilli;Bacillales_B;DSM-18226;Niallia NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK069-1-L-08h-05C8_S78__bin.2 97.7 2.1 916 11191471 38.22 19554 SAMN37604810 SRR26216000 China PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK069-1-L-48h-05C9_S79__bin.11 96.64179104 2.985074627 247 2977721 61.2 17788 SAMN37604811 SRR26215999 China PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967701__bin.5 LeechJ_2020__ERS3967701__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter oxydans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK069-1-L-48h-05C9_S79__bin.12 94.94195688 0.497512438 206 2757536 58.3 22488 SAMN37604811 SRR26215999 China PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK067-1-L-48h-05C1_S71__bin.5 MortensenS_xxxx__WK067-1-L-48h-05C1_S71__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter malorum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK069-1-L-48h-05C9_S79__bin.7 56.97674419 0 47 2056275 46.54 68732 SAMN37604811 SRR26215999 China PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.2 MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.2 Bacillota;Bacilli;Bacillales_K;Sporolactobacillaceae;Sporolactobacillus NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK069-1-L-48h-05C9_S79__bin.6 71.90731946 0.497512438 585 2517996 56.31 5182 SAMN37604811 SRR26215999 China PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK038-2-L-48h-03E5_S60__bin.2 MortensenS_xxxx__WK069-1-L-48h-05C9_S79__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter_A Gluconobacter A cerinus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK069-1-L-48h-05C9_S79__bin.1 92.24806202 0.775193798 251 3337083 43.28 21892 SAMN37604811 SRR26215999 China PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK069-1-L-48h-05C9_S79__bin.1 MortensenS_xxxx__WK069-1-L-48h-05C9_S79__bin.1 Bacillota;Bacilli;Bacillales_K;Sporolactobacillaceae;Sporolactobacillus Sporolactobacillus sp024385605 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK069-1-L-48h-05C9_S79__bin.5 59.8 0 2103 7173559 41.53 3752 SAMN37604811 SRR26215999 China PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.1 MortensenS_xxxx__WK069-1-L-48h-05C9_S79__bin.5 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Torulaspora Torulaspora quercuum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK069-1-L-48h-05C9_S79__bin.4 96.6 2.2 1107 11020400 38.25 14289 SAMN37604811 SRR26215999 China PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK069-2-G-48h-05I4_S128__bin.2 98.4496124 0.387596899 118 3082969 46.15 40256 SAMN37604812 SRR26215998 China PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.2 MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.2 Bacillota;Bacilli;Bacillales_K;Sporolactobacillaceae;Sporolactobacillus NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK069-2-G-48h-05I4_S128__bin.3 54.17671953 0.977357186 810 2135787 32.86 2649 SAMN37604812 SRR26215998 China PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.3 MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.3 Bacillota;Clostridia;Clostridiales;Clostridiaceae;Clostridium_I NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK069-2-G-48h-05I4_S128__bin.1 67.4 1 2579 8215380 38.5 3454 SAMN37604812 SRR26215998 China PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 MortensenS_xxxx__WK069-2-G-48h-05I4_S128__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK069-2-L-08h-05D1_S80__bin.6 97.28682171 0.387596899 161 3014910 46.4 28458 SAMN37604813 SRR26215997 China PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.2 MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.2 Bacillota;Bacilli;Bacillales_K;Sporolactobacillaceae;Sporolactobacillus NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK069-2-L-08h-05D1_S80__bin.3 97.5 2.1 919 11151935 38.24 19151 SAMN37604813 SRR26215997 China PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.5 100 0.497512438 28 3075151 57.83 213833 SAMN37604814 SRR26215996 China PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK067-1-L-48h-05C1_S71__bin.5 MortensenS_xxxx__WK067-1-L-48h-05C1_S71__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acetobacter Acetobacter malorum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.6 98.10381134 0 167 3061741 55.76 28370 SAMN37604814 SRR26215996 China PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK038-2-L-48h-03E5_S60__bin.2 MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.6 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter_A Gluconobacter A cerinus tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.2 98.4496124 0.387596899 76 3078646 46.16 60360 SAMN37604814 SRR26215996 China PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.2 MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.2 Bacillota;Bacilli;Bacillales_K;Sporolactobacillaceae;Sporolactobacillus NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.7 79.52174611 0.165837479 74 2252818 61.32 61447 SAMN37604814 SRR26215996 China PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967701__bin.5 LeechJ_2020__ERS3967701__bin.5 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Gluconobacter Gluconobacter oxydans tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.3 99.06403941 1.514778325 517 4286558 30.94 11566 SAMN37604814 SRR26215996 China PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.3 MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.3 Bacillota;Clostridia;Clostridiales;Clostridiaceae;Clostridium_I NA tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.1 72.7 0.1 1994 8082305 41.5 4667 SAMN37604814 SRR26215996 China PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.1 MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Torulaspora Torulaspora quercuum tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.8 94.8 2.1 1374 10813276 38.27 10880 SAMN37604814 SRR26215996 China PRJNA977472 SRP463826 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days VerceM_2019__ERS1807706__bin.3 98.20652174 0.09057971 126 2875854 46.33 33616 ERS1807706 ERR2021947 Belgium PRJEB21603 ERP023873 NCBI Verce, M., De Vuyst, L., and Weckx, S. (2019). Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species. Front. Microbiol. 10, 479. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days VerceM_2019__ERS1807706__bin.7 98.14393939 2.96969697 41 2306983 52.09 100215 ERS1807706 ERR2021947 Belgium PRJEB21603 ERP023873 NCBI Verce, M., De Vuyst, L., and Weckx, S. (2019). Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species. Front. Microbiol. 10, 479. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days VerceM_2019__ERS1807706__bin.10 78.03664921 2.38979902 262 1756499 36.67 8801 ERS1807706 ERR2021947 Belgium PRJEB21603 ERP023873 NCBI Verce, M., De Vuyst, L., and Weckx, S. (2019). Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species. Front. Microbiol. 10, 479. MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 LeechJ_2020__ERS3967723__bin.14 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus sp030400225 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days VerceM_2019__ERS1807706__bin.9 67.55793226 0 51 796333 40.22 21277 ERS1807706 ERR2021947 Belgium PRJEB21603 ERP023873 NCBI Verce, M., De Vuyst, L., and Weckx, S. (2019). Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species. Front. Microbiol. 10, 479. GCF_004102045.2_ASM410204v2_genomic VerceM_2019__ERS1807708__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus sicerae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days VerceM_2019__ERS1807706__bin.5 89.4 1.3 1245 10885729 38.17 12423 ERS1807706 ERR2021947 Belgium PRJEB21603 ERP023873 NCBI Verce, M., De Vuyst, L., and Weckx, S. (2019). Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species. Front. Microbiol. 10, 479. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days VerceM_2019__ERS1807707__bin.2 96.61458333 1.145833333 245 3031422 39.91 17583 ERS1807707 ERR2021948 Belgium PRJEB21603 ERP023873 NCBI Verce, M., De Vuyst, L., and Weckx, S. (2019). Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species. Front. Microbiol. 10, 479. MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days VerceM_2019__ERS1807707__bin.5 97.16833891 0.543478261 231 2812806 46.35 17344 ERS1807707 ERR2021948 Belgium PRJEB21603 ERP023873 NCBI Verce, M., De Vuyst, L., and Weckx, S. (2019). Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species. Front. Microbiol. 10, 479. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days VerceM_2019__ERS1807707__bin.4 98.37121212 2.96969697 78 2210469 52.16 46745 ERS1807707 ERR2021948 Belgium PRJEB21603 ERP023873 NCBI Verce, M., De Vuyst, L., and Weckx, S. (2019). Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species. Front. Microbiol. 10, 479. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days VerceM_2019__ERS1807707__bin.11 70.5679835 0.523560209 265 1460201 36.58 6957 ERS1807707 ERR2021948 Belgium PRJEB21603 ERP023873 NCBI Verce, M., De Vuyst, L., and Weckx, S. (2019). Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species. Front. Microbiol. 10, 479. MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 VerceM_2019__ERS1807707__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus sp030400225 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days VerceM_2019__ERS1807707__bin.6 52.3699422 0.096339114 810 2404621 73.27 3105 ERS1807707 ERR2021948 Belgium PRJEB21603 ERP023873 NCBI Verce, M., De Vuyst, L., and Weckx, S. (2019). Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species. Front. Microbiol. 10, 479. PothakosV_2020__ERS2068300__bin.15 PothakosV_2020__ERS2068300__bin.15 Actinomycetota;Actinomycetes;Actinomycetales;Cellulomonadaceae;Cellulosimicrobium Cellulosimicrobium funkei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days VerceM_2019__ERS1807707__bin.8 65.82030413 0.980392157 154 898283 40.4 7035 ERS1807707 ERR2021948 Belgium PRJEB21603 ERP023873 NCBI Verce, M., De Vuyst, L., and Weckx, S. (2019). Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species. Front. Microbiol. 10, 479. GCF_004102045.2_ASM410204v2_genomic VerceM_2019__ERS1807708__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus sicerae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days VerceM_2019__ERS1807707__bin.10 82.3 1.3 1419 10776462 38.12 10870 ERS1807707 ERR2021948 Belgium PRJEB21603 ERP023873 NCBI Verce, M., De Vuyst, L., and Weckx, S. (2019). Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species. Front. Microbiol. 10, 479. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days VerceM_2019__ERS1807708__bin.8 97.22826087 0 122 2861733 46.3 40717 ERS1807708 ERR2021949 Belgium PRJEB21603 ERP023873 NCBI Verce, M., De Vuyst, L., and Weckx, S. (2019). Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species. Front. Microbiol. 10, 479. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days VerceM_2019__ERS1807708__bin.9 97.27272727 2.96969697 58 2203917 52.09 58223 ERS1807708 ERR2021949 Belgium PRJEB21603 ERP023873 NCBI Verce, M., De Vuyst, L., and Weckx, S. (2019). Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species. Front. Microbiol. 10, 479. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days VerceM_2019__ERS1807708__bin.4 81.39037433 0 46 1077155 40.45 39783 ERS1807708 ERR2021949 Belgium PRJEB21603 ERP023873 NCBI Verce, M., De Vuyst, L., and Weckx, S. (2019). Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species. Front. Microbiol. 10, 479. GCF_004102045.2_ASM410204v2_genomic VerceM_2019__ERS1807708__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus sicerae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days VerceM_2019__ERS1807708__bin.1 94.93891798 0.523560209 113 2079797 36.72 31679 ERS1807708 ERR2021949 Belgium PRJEB21603 ERP023873 NCBI Verce, M., De Vuyst, L., and Weckx, S. (2019). Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species. Front. Microbiol. 10, 479. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days VerceM_2019__ERS1807709__bin.8 98.76150975 0.27173913 187 2737655 46.53 19784 ERS1807709 ERR2021950 Belgium PRJEB21603 ERP023873 NCBI Verce, M., De Vuyst, L., and Weckx, S. (2019). Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species. Front. Microbiol. 10, 479. FontanaF_2023__SRR20746951__bin.4 MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days VerceM_2019__ERS1807709__bin.5 97.91666667 2.96969697 76 2261629 52.08 42410 ERS1807709 ERR2021950 Belgium PRJEB21603 ERP023873 NCBI Verce, M., De Vuyst, L., and Weckx, S. (2019). Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species. Front. Microbiol. 10, 479. MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9 MortensenS_xxxx__WK062-1-L-48h-04I4_S47__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bombiscardovia Bombiscardovia aquikefiri tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days VerceM_2019__ERS1807709__bin.1 59.63949843 1.724137931 475 1982258 35.69 4970 ERS1807709 ERR2021950 Belgium PRJEB21603 ERP023873 NCBI Verce, M., De Vuyst, L., and Weckx, S. (2019). Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species. Front. Microbiol. 10, 479. MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4 VerceM_2019__ERS1807709__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus sp030400225 tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days VerceM_2019__ERS1807709__bin.2 76.27508481 1.515151515 143 1113031 40.4 9611 ERS1807709 ERR2021950 Belgium PRJEB21603 ERP023873 NCBI Verce, M., De Vuyst, L., and Weckx, S. (2019). Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species. Front. Microbiol. 10, 479. GCF_004102045.2_ASM410204v2_genomic VerceM_2019__ERS1807708__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus sicerae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days VerceM_2019__ERS1807709__bin.4 84.92629324 2.966841187 380 2012448 36.77 7076 ERS1807709 ERR2021950 Belgium PRJEB21603 ERP023873 NCBI Verce, M., De Vuyst, L., and Weckx, S. (2019). Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species. Front. Microbiol. 10, 479. MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Liquorilactobacillus Liquorilactobacillus nagelii tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days VerceM_2019__ERS1807709__bin.7 76.3 1.4 1748 10562459 38.08 7813 ERS1807709 ERR2021950 Belgium PRJEB21603 ERP023873 NCBI Verce, M., De Vuyst, L., and Weckx, S. (2019). Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species. Front. Microbiol. 10, 479. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae tibicos fig water_kefir Plant Sugar sugar beverage liquid low lactic mesophilic 1-7 days GCF_001434395.1_ASM143439v1_genomic 99.06 0.09 52 2810184 49.4 225723 GCF_001434395.1 GCF_001434395.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_001434395.1_ASM143439v1_genomic GCF_001434395.1_ASM143439v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Levilactobacillus Levilactobacillus hammesii sourdough wheat_sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days GCF_001434585.1_ASM143458v1_genomic 99.48 1.05 89 2215815 34.99 50865 GCF_001434585.1 GCF_001434585.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 LandisEA_2021__SRS5653137__bin.2 GCF_001434585.1_ASM143458v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus crustorum sourdough wheat_sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days GCF_007989765.1_ASM798976v1_genomic 99.46 0.54 117 2038617 44.01 31684 GCF_007989765.1 GCF_007989765.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_007989765.1_ASM798976v1_genomic GCF_007989765.1_ASM798976v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Furfurilactobacillus Furfurilactobacillus siliginis sourdough wheat_sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days GCF_007991935.1_ASM799193v1_genomic 99.48 1.31 155 2895933 36.14 37322 NA NA NA NA NA NA NA GCF_007991935.1_ASM799193v1_genomic GCF_007991935.1_ASM799193v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Companilactobacillus Companilactobacillus nantensis sourdough wheat_sourdough Plant Grain wheat starch-based staple solid low mixed mesophilic 1-2 days AlvarezOrdonezA_xxxx__Q01-21__bin.1 91.66058024 2.704402516 342 2637195 34.64 16010 SAMN36689966 SRR25395508 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q01-21__bin.3 91.34331462 1.19047619 167 1473028 39.43 13205 SAMN36689966 SRR25395508 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 AlvarezOrdonezA_xxxx__Q01-23__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q01-21__bin.2 58.93416928 0 415 1334829 36.4 3609 SAMN36689966 SRR25395508 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 AlvarezOrdonezA_xxxx__Q01-21__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q02-21__bin.5 68.96551724 2.298850575 495 1676763 34.68 3693 SAMN36689969 SRR25395505 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 AlvarezOrdonezA_xxxx__Q02-21__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q02-21__bin.1 93.77729258 0.232896652 61 1671192 39.06 57651 SAMN36689969 SRR25395505 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q02-21__bin.6 92.45283019 0.691823899 168 1837665 40.72 15180 SAMN36689969 SRR25395505 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 FontanaF_2023__SRR20746866__bin.6 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q02-21__bin.7 83.88714734 1.724137931 324 2834663 34.94 16926 SAMN36689969 SRR25395505 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q03-21__bin.5 82.5547354 4.621212121 333 1961937 34.7 8890 SAMN36689971 SRR25395503 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q03-21__bin.8 74.183822 1.491994178 76 1271807 38.75 32725 SAMN36689971 SRR25395503 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q03-21__bin.1 92.83318578 2.48427673 173 2305789 35.61 20691 SAMN36689971 SRR25395503 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q03-21__bin.7 55.26315789 1.754385965 508 4136890 59.21 11112 SAMN36689971 SRR25395503 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__CS001_71775__bin.6 AlvarezOrdonezA_xxxx__Q03-21__bin.7 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E lundensis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q03-21__bin.9 89.39371937 2.956357692 616 4157062 49.92 8647 SAMN36689971 SRR25395503 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q03-21__bin.9 AlvarezOrdonezA_xxxx__Q03-21__bin.9 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Buttiauxella Buttiauxella massiliensis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q04-21__bin.14 51.36363636 4.310344828 293 3904243 49.37 19934 SAMN36689974 SRR25395499 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811283__bin.7 FalardeauJ_2023__SRR20811283__bin.7 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia alvei whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q04-21__bin.21 54.62382445 0 361 1336698 36.01 4071 SAMN36689974 SRR25395499 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 AlvarezOrdonezA_xxxx__Q04-21__bin.21 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q04-21__bin.16 98.64480874 0.118397086 52 5122527 53.04 178948 SAMN36689974 SRR25395499 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q04-21__bin.16 AlvarezOrdonezA_xxxx__Q04-21__bin.16 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Rahnella Rahnella inusitata whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q04-21__bin.23 58.26018809 3.448275862 445 3744439 48.55 9957 SAMN36689974 SRR25395499 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811137__bin.9 AlvarezOrdonezA_xxxx__Q02-27__bin.6 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia paralvei whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q04-21__bin.10 98.68013058 1.886792453 148 2315201 35.49 25309 SAMN36689974 SRR25395499 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q04-21__bin.1 53.44827586 0 239 816130 38.12 3927 SAMN36689974 SRR25395499 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967741__bin.9 AlvarezOrdonezA_xxxx__Q04-21__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc gasicomitatum whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q04-21__bin.11 85.34688402 1.376783352 442 3628451 53.85 10547 SAMN36689974 SRR25395499 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q04-21__bin.11 AlvarezOrdonezA_xxxx__Q04-21__bin.11 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Lelliottia Lelliottia sp022649305 whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q05-21__bin.4 62.33333333 0.03030303 27 2500093 49.38 135840 SAMN36689977 SRR25395496 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811283__bin.7 FalardeauJ_2023__SRR20811283__bin.7 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia alvei whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q05-21__bin.8 80.1985371 0 291 1917670 35.03 8857 SAMN36689977 SRR25395496 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q05-21__bin.5 99.24528302 1.509433962 100 2518632 35.49 61873 SAMN36689977 SRR25395496 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q05-21__bin.11 51.03448276 0 25 1633560 56.28 97959 SAMN36689977 SRR25395496 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS08-29__bin.64 AlvarezOrdonezA_xxxx__Q05-21__bin.11 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Serratia Serratia liquefaciens whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q06-21__bin.1 67.24137931 0 463 1830459 35.68 4743 SAMN36689980 SRR25395493 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 AlvarezOrdonezA_xxxx__Q06-21__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q06-21__bin.3 68.24743369 0.980106744 238 1100235 40.36 5015 SAMN36689980 SRR25395493 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q06-21__bin.5 51.88087774 0 231 830900 42.14 3834 SAMN36689980 SRR25395493 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 AlvarezOrdonezA_xxxx__Q06-21__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q07-21__bin.7 98.48484848 0.378787879 62 2222062 35.01 69540 SAMN36689983 SRR25395489 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q07-21__bin.4 98.34843305 1.169191919 300 4364891 48.29 22883 SAMN36689983 SRR25395489 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811137__bin.9 MacoriG_2019__CS_R36__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia paralvei whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q07-21__bin.3 72.4137931 1.724137931 662 1836297 36.14 2788 SAMN36689983 SRR25395489 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2146_73322__bin.6 AlvarezOrdonezA_xxxx__Q07-21__bin.3 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Carnobacterium Carnobacterium maltaromaticum whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q07-21__bin.1 57.01754386 0 628 2140532 59.38 3628 SAMN36689983 SRR25395489 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__CS001_71775__bin.6 AlvarezOrdonezA_xxxx__Q07-21__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E lundensis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q08-21__bin.5 97.31975876 2.437106918 125 2262711 34.91 28342 SAMN36689986 SRR25395486 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q08-21__bin.8 88.13964967 0.460941291 191 1471293 39.62 9529 SAMN36689986 SRR25395486 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 AlvarezOrdonezA_xxxx__Q08-21__bin.8 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q08-21__bin.18 97.88359788 0.264550265 148 1632159 39.47 16576 SAMN36689986 SRR25395486 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q08-21__bin.7 77.57984154 0.786163522 328 1431128 40.01 5242 SAMN36689986 SRR25395486 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 AlvarezOrdonezA_xxxx__Q08-21__bin.7 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable AlvarezOrdonezA_xxxx__Q08-21__bin.1 60.5661882 0.877192982 188 3586922 56.07 25951 SAMN36689986 SRR25395486 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. AlvarezOrdonezA_xxxx__Q02-30__bin.22 AlvarezOrdonezA_xxxx__Q08-21__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Klebsiella Klebsiella ornithinolytica whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_1__P2142_73322__bin.13 97.81420765 4.735883424 216 3632274 34.25 33434 SAMN36689890 SRR25395241 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2146_73322__bin.6 MASTER_WP4_CSIC_1__P2146_73322__bin.6 Bacillota;Bacilli;Lactobacillales;Carnobacteriaceae;Carnobacterium Carnobacterium maltaromaticum whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_1__P2142_73322__bin.20 54.65517241 1.724137931 276 1492542 34.99 7147 SAMN36689890 SRR25395241 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_CSIC_1__P2142_73322__bin.20 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_1__P2142_73322__bin.5 55.26315789 0 607 3200588 59.02 6256 SAMN36689890 SRR25395241 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_900618535.1_TH39_genomic MASTER_WP4_CSIC_1__P2142_73322__bin.5 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E bubulae whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_1__P2152_73322__bin.12 70.297805640000007 0 132 1719452 34.85 21559 SAMN36689885 SRR25395203 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_1__P2152_73322__bin.17 52.19435737 0 197 981666 35.78 6526 SAMN36689885 SRR25395203 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_1__P2152_73322__bin.9 90.63791554 2.00359389 250 1930959 39.1 10683 SAMN36689885 SRR25395203 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_1__P2162_73322__bin.4 95.79782917 0.85191538 133 2117540 34.96 25303 SAMN36689911 SRR25394844 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_1__P2162_73322__bin.1 74.09090909 0 322 1854066 35.28 7224 SAMN36689911 SRR25394844 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_1__P2172_73322__bin.12 67.31441048 0.145560408 32 1139308 39.42 59154 SAMN36689921 SRR25394817 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_1__P2172_73322__bin.10 98.45454545 0.757575758 36 1876071 63.72 87295 SAMN36689921 SRR25394817 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_296__bin.3 CM_UNINA_FFOOD__FFOOD_296__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_1__P2172_73322__bin.4 97.91666667 0 87 2789106 68.5 44361 SAMN36689921 SRR25394817 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2172_73322__bin.4 MASTER_WP4_CSIC_1__P2172_73322__bin.4 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium NA whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_1__P2172_73322__bin.6 72.22956235 1.156069364 471 1673783 65.96 4024 SAMN36689921 SRR25394817 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MilaniC_2019__SRR7587240__bin.19 MASTER_WP4_CSIC_1__P2172_73322__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Pseudoclavibacter_A Pseudoclavibacter A sp008831235 whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_1__P2182_73322__bin.3 76.47909148 1.115292955 886 4031197 61.53 5673 SAMN36689909 SRR25395022 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2184_73322__bin.5 MASTER_WP4_CSIC_1__P2187_73322__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E sp012985465 whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_1__P2192_73323__bin.5 56.88452524 0.126262626 117 1218921 35.08 18543 SAMN36689865 SRR25395226 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_CSIC_1__P2192_73323__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_1__P2192_73323__bin.8 94.43855271 0.260189229 139 1549768 39.28 15314 SAMN36689865 SRR25395226 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_1__P2192_73323__bin.6 74.6296409 0.125786164 124 1620793 35.47 22264 SAMN36689865 SRR25395226 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_1__P2212_73323__bin.3 57.33901712 0.473071325 68 923430 40.09 19622 SAMN36689880 SRR25395268 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_1__P2212_73323__bin.6 51.20689655 1.724137931 129 1304240 35.1 16630 SAMN36689880 SRR25395268 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 FontanaF_2023__SRR20746818__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_1__P2222_73323__bin.7 68.96551724 0 101 1249635 39.26 17830 SAMN36689918 SRR25395349 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_1__P2232_73323__bin.1 95.97879719 0.757575758 221 2082219 35.07 14046 SAMN36689915 SRR25395121 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_1__P2232_73323__bin.12 55.17241379 0 6 627544 37.78 315033 SAMN36689915 SRR25395121 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308520__bin.4 MASTER_WP4_CSIC_1__P2233_73323__bin.20 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_1__P2232_73323__bin.4 75.86206897 1.724137931 508 3171066 41.22 7685 SAMN36689915 SRR25395121 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-26__bin.7 MASTER_WP4_CSIC_1__P2232_73323__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter johnsonii whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_1__P2232_73323__bin.8 94.82600733 2.335164835 164 1718679 39.7 16138 SAMN36689915 SRR25395121 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YuY_2022__SRR16950700__bin.19 MASTER_WP4_CSIC_1__P2232_73323__bin.8 Bacillota;Bacilli;Lactobacillales;Aerococcaceae;Aerococcus Aerococcus urinaeequi whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_1__P2232_73323__bin.6 99.76883562 2.534246575 71 3533647 37.45 98660 SAMN36689915 SRR25395121 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2232_73323__bin.6 MASTER_WP4_CSIC_1__P2232_73323__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter NA whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_1__P2242_73323__bin.11 66.51515152 3.448275862 236 1759691 39.9 9498 SAMN36689913 SRR25394821 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 WalshL_xxxx__F1__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_1__P2242_73323__bin.17 56.37254902 0.245098039 20 1851700 37.3 295169 SAMN36689913 SRR25394821 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_281__bin.3 MASTER_WP4_CSIC_1__P2242_73323__bin.17 Bacteroidota;Bacteroidia;Flavobacteriales;Weeksellaceae;Chryseobacterium Chryseobacterium carnipullorum whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2477__bin.1 97.70723104 0.264550265 65 1662619 39.29 37505 SAMN36689867 SRR25394849 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2507__bin.4 72.39289446 0 196 1581789 35.16 12785 SAMN36689873 SRR25395512 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2507__bin.7 62.42730085 0.207943439 157 905508 39.87 7171 SAMN36689873 SRR25395512 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2507__bin.8 88.88888889 0 49 1461825 39.38 42241 SAMN36689873 SRR25395512 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2517__bin.37 52.38244514 0 113 1283137 35 22087 SAMN36689875 SRR25395490 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2517__bin.32 51.85185185 0 34 922952 37.87 42426 SAMN36689875 SRR25395490 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic WalshL_xxxx__T5__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2517__bin.5 93.90909091 1.262626263 135 1684413 64.41 20115 SAMN36689875 SRR25395490 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_296__bin.3 CM_UNINA_FFOOD__FFOOD_296__bin.3 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2517__bin.10 98.46096096 3.820785071 242 2992656 67.7 22591 SAMN36689875 SRR25395490 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 AlvarezOrdonezA_xxxx__R03-18__bin.3 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2517__bin.17 97.03947368 0.093984962 230 3010618 68.85 22572 SAMN36689875 SRR25395490 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2517__bin.17 MASTER_WP4_CSIC_2__P2517__bin.17 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Acidipropionibacterium Acidipropionibacterium jensenii whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2517__bin.12 74.28256071 3.090507726 658 2606196 63.9 4675 SAMN36689875 SRR25395490 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2517__bin.12 MASTER_WP4_CSIC_2__P2517__bin.12 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Brooklawnia Brooklawnia sp030286045 whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2517__bin.38 92.22869563 1.318965517 575 3235977 69.69 7413 SAMN36689875 SRR25395490 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2517__bin.38 MASTER_WP4_CSIC_2__P2517__bin.38 Pseudomonadota;Gammaproteobacteria;Xanthomonadales;Xanthomonadaceae;Luteimonas Luteimonas sp023423235 whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2517__bin.13 97.51461988 0.142021721 67 2315822 68.44 66495 SAMN36689875 SRR25395490 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2517__bin.13 MASTER_WP4_CSIC_2__P2517__bin.13 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Gulosibacter NA whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2517__bin.19 83.61969112 4.316816817 783 3495292 68.93 5497 SAMN36689875 SRR25395490 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2517__bin.19 MASTER_WP4_CSIC_2__P2517__bin.19 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium nuruki whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2517__bin.14 89.71291866 3.827751196 344 3161368 67.51 12995 SAMN36689875 SRR25395490 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2517__bin.14 MASTER_WP4_CSIC_2__P2517__bin.14 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2517__bin.16 99.34210526 0.219298246 149 3424666 68.39 43830 SAMN36689875 SRR25395490 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2517__bin.16 MASTER_WP4_CSIC_2__P2517__bin.16 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Acidipropionibacterium Acidipropionibacterium virtanenii whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2517__bin.25 97.80701754 0.058479532 133 2352939 69.35 27031 SAMN36689875 SRR25395490 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2517__bin.25 MASTER_WP4_CSIC_2__P2517__bin.25 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Gulosibacter NA whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2517__bin.2 98.98477157 1.52284264 86 2914896 70.76 55447 SAMN36689875 SRR25395490 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2517__bin.2 MASTER_WP4_CSIC_2__P2517__bin.2 Actinomycetota;Actinomycetes;Actinomycetales;Microbacteriaceae;Microbacterium NA whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2517__bin.26 58.9 0 2152 7974753 38.55 4128 SAMN36689875 SRR25395490 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2246_73323__bin.19 MASTER_WP4_CSIC_1__P2246_73323__bin.19 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces Kluyveromyces lactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2527__bin.12 62.96296296 0 17 1029871 37.89 96163 SAMN36689877 SRR25395468 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2537__bin.2 52.06896552 0 88 799243 35.28 12612 SAMN36689882 SRR25394915 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2537__bin.4 62.88401254 0 77 1254252 35.68 24454 SAMN36689882 SRR25394915 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2543__bin.14 64.57680251 2.586206897 502 1745120 38.74 3854 SAMN36689887 SRR25395441 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MagliuloR_2024__SRR28235359__bin.3 MASTER_WP4_CSIC_2__P2543__bin.14 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter albensis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2543__bin.10 64.21052632 0 31 2538740 58.56 166562 SAMN36689887 SRR25395441 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_900618535.1_TH39_genomic GCF_900618535.1_TH39_genomic Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E bubulae whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2553__bin.2 52.90645021 0.298455056 264 755875 43.81 3022 SAMN36689892 SRR25394888 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0094-002_Leuconostoc_lactis_WIKIM21 MASTER_WP4_CSIC_2__P2559__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis A whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2563__bin.10 79.90746517 0.145560408 32 1342896 39.07 62842 SAMN36689894 SRR25395187 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2573__bin.1 50 0 26 1077547 38.65 63012 SAMN36689898 SRR25395236 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 FontanaF_2023__SRR20746838__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2573__bin.4 80.24990317 1.805031447 180 2051675 35.34 19875 SAMN36689898 SRR25395236 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2573__bin.3 55.98746082 0 175 1522784 34.72 13473 SAMN36689898 SRR25395236 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_CSIC_2__P2573__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2583__bin.10 93.2663107 1.132252027 185 1490515 39.39 10113 SAMN36689900 SRR25395038 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2583__bin.4 56.29984051 0 649 2969914 59.07 5627 SAMN36689900 SRR25395038 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__D9__bin.6 MASTER_WP4_CSIC_2__P2583__bin.4 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E helleri whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2603__bin.12 80.60407569 0.145560408 28 1356392 39.14 65912 SAMN36689904 SRR25395159 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2603__bin.2 74.13793103 0 13 1897935 43.78 207995 SAMN36689904 SRR25395159 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2603__bin.2 MASTER_WP4_CSIC_2__P2603__bin.2 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Moraxella_A Moraxella A sp902506215 whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2603__bin.13 55.17241379 0 208 4525914 62.5 33525 SAMN36689904 SRR25395159 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WolfeBE_2014__932_Robiola_due_Latte__bin.1 MASTER_WP4_CSIC_2__P2603__bin.13 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E putida whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2613__bin.24 51.89393939 0.189393939 49 1048278 35.25 33582 SAMN36689906 SRR25395398 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MASTER_WP4_UNINA_2__O-23.1__bin.12 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2613__bin.16 61.19222814 0.639277389 144 2503025 48.42 21836 SAMN36689906 SRR25395398 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811137__bin.9 MacoriG_2019__CS_R36__bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Hafnia Hafnia paralvei whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2613__bin.25 66.37931034 0 307 1695288 35.59 6748 SAMN36689906 SRR25395398 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_CSIC_2__P2613__bin.25 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2613__bin.15 69.70198675 0.82781457 107 1562187 39.96 20640 SAMN36689906 SRR25395398 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_001885995.1_ASM188599v1_genomic MASTER_WP4_CSIC_2__P2618__bin.5 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_G Enterococcus G italicus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2623__bin.13 97.57094757 3.262786596 110 1691522 37.85 36168 SAMN36689924 SRR25395105 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2623__bin.31 80.40652942 0.145560408 37 1422209 39.05 65010 SAMN36689924 SRR25395105 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2623__bin.38 62.64150943 0.125786164 20 1290264 40.46 139076 SAMN36689924 SRR25395105 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746866__bin.6 WalshL_xxxx__F1__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A raffinolactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2623__bin.26 57.71159875 1.724137931 382 3331654 55.86 10963 SAMN36689924 SRR25395105 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS08-29__bin.64 MASTER_WP4_CSIC_2__P2623__bin.26 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Serratia Serratia liquefaciens whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2623__bin.28 85.03394195 0.341670268 165 1264697 43.81 9448 SAMN36689924 SRR25395105 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0094-002_Leuconostoc_lactis_WIKIM21 MASTER_WP4_CSIC_2__P2559__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc lactis A whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2623__bin.6 62.06896552 0 7 809857 37.63 189979 SAMN36689924 SRR25395105 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308520__bin.4 YouL_2022__SRR13308520__bin.4 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2623__bin.59 78.79672331 2.819213573 311 3882291 54.81 19891 SAMN36689924 SRR25395105 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2623__bin.59 MASTER_WP4_CSIC_2__P2623__bin.59 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Pantoea Pantoea floridensis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2633__bin.18 72.43991641 0 201 1890743 34.91 17079 SAMN36689926 SRR25395344 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2633__bin.19 99.93172896 0 79 1705881 37.79 36221 SAMN36689926 SRR25395344 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2633__bin.9 70.14465409 0.566037736 266 1517782 35.6 7136 SAMN36689926 SRR25395344 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2633__bin.15 61.30739034 0 56 1164303 39.32 35371 SAMN36689926 SRR25395344 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2633__bin.17 98.87387387 0.900900901 142 3064477 67.5 31981 SAMN36689926 SRR25395344 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FalardeauJ_2023__SRR20811223__bin.4 MASTER_WP4_CSIC_2__P2633__bin.17 Actinomycetota;Actinomycetes;Mycobacteriales;Mycobacteriaceae;Corynebacterium Corynebacterium variabile whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2633__bin.16 97.41161616 0.679244997 92 5181185 61.84 89907 SAMN36689926 SRR25395344 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_2__P2633__bin.16 MASTER_WP4_CSIC_2__P2633__bin.16 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E shirazensis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2645__bin.8 59.89082969 0.145560408 29 1023942 39.25 59156 SAMN36689922 SRR25394806 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2645__bin.6 82.65836941 2.20959596 370 1562520 64.24 4991 SAMN36689922 SRR25394806 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_296__bin.3 MASTER_WP4_CSIC_2__P2645__bin.6 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_CSIC_2__P2645__bin.2 61.3674812 1.644736842 579 1860007 68.98 3593 SAMN36689922 SRR25394806 Spain PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2172_73322__bin.4 MASTER_WP4_CSIC_1__P2172_73322__bin.4 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Propionibacterium NA whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_1__DC18-02__bin.7 76.29098219 0.451237263 153 1175845 39.58 9941 SAMN36689940 SRR25395300 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_1__DC18-02__bin.11 57.53424658 0 61 2020051 41.43 45621 SAMN36689940 SRR25395300 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__DC18-02__bin.11 MASTER_WP4_FFoQSI_1__DC18-02__bin.11 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter sp002135205 whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_1__RC17-02__bin.17 93.38624339 1.14638448 149 1355508 37.89 12481 SAMN36689989 SRR25395483 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_FFoQSI_3__VB09-26__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_1__RC17-02__bin.16 63.92694064 0.136986301 101 2081020 41.07 32763 SAMN36689989 SRR25395483 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-26__bin.7 MASTER_WP4_FFoQSI_1__RC17-02__bin.16 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter johnsonii whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_1__RC17-02__bin.9 77.13815789 4.122807018 694 2157150 70.71 3442 SAMN36689989 SRR25395483 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_1__RC17-02__bin.9 MASTER_WP4_FFoQSI_1__RC17-02__bin.9 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Kocuria Kocuria rhizophila whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_2__VB03-21__bin.2 90.99778194 1.909180703 258 1500250 39.27 8035 SAMN36690009 SRR25395461 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_2__VB03-21__bin.3 51.19172246 0.377358491 456 1229260 35.5 2695 SAMN36690009 SRR25395461 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_FFoQSI_2__VB03-21__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_2__VB03-21__bin.4 85.30701754 2.203947368 584 2353426 70.59 4529 SAMN36690009 SRR25395461 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__O-30__bin.2 MASTER_WP4_FFoQSI_2__VB03-21__bin.4 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Kocuria Kocuria varians whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_2__VB04-21__bin.3 98.87190684 0.489360227 94 1743647 39.02 24281 SAMN36690011 SRR25395459 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_2__VB04-21__bin.1 98.08278062 1.903336433 564 5828379 61.21 16047 SAMN36690011 SRR25395459 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_CSIC_1__P2184_73322__bin.5 MASTER_WP4_FFoQSI_2__VB04-21__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E sp012985465 whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_2__VB05-21__bin.1 89.02110626 1.540514313 265 1461063 39.22 7563 SAMN36690013 SRR25395289 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 SomervilleV_2019__SRS3593113__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_2__VB05-21__bin.2 97.72727273 0 131 1730274 50.3 19420 SAMN36690013 SRR25395289 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_2__VB05-21__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_2__VB06-21__bin.15 96.06073566 3.058712121 327 2223745 35.06 9012 SAMN36690016 SRR25395286 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_2__VB06-21__bin.13 92.26663939 0.513620295 167 1444947 39.47 12522 SAMN36690016 SRR25395286 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_2__VB06-21__bin.14 80.68256903 0.946969697 263 1295594 51.06 5676 SAMN36690016 SRR25395286 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_2__VB05-21__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_2__VB06-21__bin.6 99.18949772 2.01120797 74 4780360 37.98 146556 SAMN36690016 SRR25395286 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB06-21__bin.6 MASTER_WP4_FFoQSI_2__VB06-21__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter guillouiae whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_2__VB06-21__bin.1 66.47746546 1.714404317 481 2035589 41.67 4736 SAMN36690016 SRR25395286 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_FFoQSI_2__VB11-26__bin.7 MASTER_WP4_FFoQSI_2__VB06-21__bin.1 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Moraxellaceae;Acinetobacter Acinetobacter johnsonii whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_2__VB06-21__bin.7 85.87196468 1.986754967 215 2153586 56.35 16136 SAMN36690016 SRR25395286 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308537__bin.18 MASTER_WP4_FFoQSI_2__VB06-21__bin.7 Actinomycetota;Actinomycetes;Actinomycetales;Micrococcaceae;Rothia Rothia endophytica whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_2__VB08-21__bin.1 94.75665587 0.647743814 182 1491848 39.45 12018 SAMN36690021 SRR25395281 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_2__VB08-21__bin.5 95.12987013 0 107 1609624 50.53 24318 SAMN36690021 SRR25395281 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_2__VB05-21__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_2__VB08-21__bin.7 73.71561813 3.314917127 381 1496430 36.87 4421 SAMN36690021 SRR25395281 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308520__bin.4 MASTER_WP4_FFoQSI_2__VB08-21__bin.7 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_2__VB08-21__bin.6 97.15909091 3.592232548 481 4750592 59.01 14394 SAMN36690021 SRR25395281 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__CS001_71775__bin.6 MASTER_WP4_FFoQSI_2__VB08-21__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E lundensis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_2__VB10-21__bin.3 68.37336245 0.145560408 132 1043067 39.43 11012 SAMN36690026 SRR25395275 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_2__VB10-21__bin.2 89.74141005 0.708382527 206 1568566 50.62 9563 SAMN36690026 SRR25395275 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_2__VB05-21__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_2__VB11-21__bin.10 52.81416788 0.062383032 88 808448 40.12 12842 SAMN36690029 SRR25395272 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_2__VB11-21__bin.1 95.77922078 0 110 1668400 50.45 23192 SAMN36690029 SRR25395272 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_2__VB15-21__bin.10 50.43425522 0.062383032 65 823415 39.56 16491 SAMN36690040 SRR25394929 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_2__VB15-21__bin.9 58.62360402 0.054347826 278 1697479 46.82 7878 SAMN36690040 SRR25394929 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746951__bin.4 FontanaF_2023__SRR20746951__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_2__VB15-21__bin.7 83.03144224 0 79 1279914 50.67 26905 SAMN36690040 SRR25394929 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_2__VB05-21__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_2__VB15-21__bin.5 74.73684211 0 43 3656055 58.64 128514 SAMN36690040 SRR25394929 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_1__CS001_71775__bin.6 MASTER_WP4_UNINA_1__CS001_71775__bin.6 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E lundensis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_2__VB16-21__bin.1 83.72946559 0.581461842 198 1310851 39.53 9333 SAMN36690043 SRR25394925 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_3__VB01-21__bin.1 92.32896652 1.533063007 209 1531559 39.36 9896 SAMN36690003 SRR25395467 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 SomervilleV_2019__SRS3593113__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_3__VB01-21__bin.2 97.51082251 0.757575758 163 1751561 50.1 15629 SAMN36690003 SRR25395467 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_2__VB05-21__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_3__VB02-21__bin.2 55.22988506 0 117 1290289 34.79 15653 SAMN36690006 SRR25395464 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_3__VB02-21__bin.8 94.40035273 0.105820106 149 1257779 38.15 11964 SAMN36690006 SRR25395464 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_FFoQSI_3__VB09-26__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_3__VB02-21__bin.10 84.43474042 0.18922853 70 1476015 39.25 28591 SAMN36690006 SRR25395464 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_3__VB02-21__bin.1 95.77922078 0 94 1564381 50.63 26640 SAMN36690006 SRR25395464 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_2__VB05-21__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_3__VB07-21__bin.4 94.47598253 0.550010397 145 1514530 39.39 14155 SAMN36690018 SRR25395284 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_3__VB07-21__bin.3 58.62068966 0 164 881366 38.23 6737 SAMN36690018 SRR25395284 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YouL_2022__SRR13308520__bin.4 MASTER_WP4_FFoQSI_3__VB07-21__bin.3 Bacillota;Bacilli;Staphylococcales;Staphylococcaceae;Macrococcoides Macrococcoides caseolyticum whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_3__VB09-21__bin.8 81.25909753 0.145560408 45 1256444 39.63 49280 SAMN36690024 SRR25395277 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 SomervilleV_2019__SRS3593113__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_3__VB09-21__bin.1 84.1588742 2.232704403 196 1723643 39.07 10941 SAMN36690024 SRR25395277 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 WalshL_xxxx__V9__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_3__VB12-21__bin.1 94.44323144 0.473071325 181 1527440 39.36 11724 SAMN36690032 SRR25395269 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_FFoQSI_3__VB14-21__bin.3 51.37311984 0.237055521 92 840090 39.6 12039 SAMN36690037 SRR25394932 Austria PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_TEAGASC_1__TGS01-21__bin.6 65.57765152 0.757575758 127 1493852 35.07 17361 SAMN40695609 SRR28523216 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_TEAGASC_1__TGS01-21__bin.2 55.82744979 0.691823899 258 1099728 39.37 4646 SAMN40695609 SRR28523216 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MASTER_WP4_TEAGASC_1__TGS01-21__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_TEAGASC_1__TGS03-21__bin.1 57.18553459 0.377358491 105 1515060 34.96 24543 SAMN40695611 SRR28523214 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_TEAGASC_1__TGS04-21__bin.4 76.38975967 0 153 1977727 34.77 22256 SAMN40695612 SRR28523213 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_TEAGASC_1__TGS04-21__bin.5 56.14035088 0 28 939015 38.85 68584 SAMN40695612 SRR28523213 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_TEAGASC_1__TGS04-21__bin.9 89.02517041 2.798742138 322 1721777 39.26 6713 SAMN40695612 SRR28523213 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MASTER_WP4_TEAGASC_1__TGS04-21__bin.9 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_TEAGASC_1__TGS05-21__bin.5 98.49867725 1.301374717 288 4334051 51 22487 SAMN40695613 SRR28523212 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_2020__ERS3967688__bin.2 MAG_122 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia Escherichia coli whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_TEAGASC_1__TGS07-21__bin.7 68.39622642 0.188679245 31 1536717 34.88 123708 SAMN40695615 SRR28523210 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_TEAGASC_1__TGS07-21__bin.4 78.94984326 0 216 1900358 35.48 13028 SAMN40695615 SRR28523210 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_TEAGASC_1__TGS07-21__bin.8 68.01948052 0 230 3696588 58.53 24977 SAMN40695615 SRR28523210 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_TEAGASC_1__TGS07-21__bin.8 MASTER_WP4_TEAGASC_1__TGS07-21__bin.8 Pseudomonadota;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas_E Pseudomonas E fragi D whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_TEAGASC_1__TGS08-21__bin.2 68.36990596 0 163 1943487 34.75 21295 SAMN40695616 SRR28523208 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_TEAGASC_1__TGS08-21__bin.8 87.23402742 0.529100529 83 1637984 37.71 34927 SAMN40695616 SRR28523208 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic MASTER_WP4_CSIC_2__P2528__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_TEAGASC_1__TGS08-21__bin.7 88.07258526 0.314465409 314 1817983 35.64 7533 SAMN40695616 SRR28523208 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_TEAGASC_1__TGS08-21__bin.6 98.94179894 0.176366843 49 1565463 39.47 39622 SAMN40695616 SRR28523208 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6 MAG_375 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc falkenbergense whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_TEAGASC_1__TGS08-21__bin.1 87.79874214 0.314465409 167 1795109 39.17 16222 SAMN40695616 SRR28523208 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshL_xxxx__V9__bin.2 MAG_419 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A laudensis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_TEAGASC_1__TGS10-21__bin.6 89.57218816 1.167929293 284 2121859 34.79 11488 SAMN40695618 SRR28523206 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_TEAGASC_1__TGS10-21__bin.8 85.5926388 0.145560408 39 1489888 39.12 60568 SAMN40695618 SRR28523206 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_TEAGASC_1__TGS10-21__bin.1 83.50614176 1.163522013 153 2078657 35.52 21389 SAMN40695618 SRR28523206 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_TEAGASC_1__TGS11-21__bin.9 85.44707839 0.145560408 38 1491904 39.06 61253 SAMN40695619 SRR28523205 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_TEAGASC_1__TGS13-21__bin.1 96.22641509 0 69 2165069 35.08 57073 SAMN40695621 SRR28523203 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_TEAGASC_1__TGS13-21__bin.6 83.80657794 0.746047398 247 1308568 39.5 6901 SAMN40695621 SRR28523203 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_TEAGASC_1__TGS13-21__bin.3 91.18555687 0.162078751 331 1628153 36.49 6261 SAMN40695621 SRR28523203 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746979__bin.3 FontanaF_2023__SRR20746829__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_TEAGASC_1__TGS14-21__bin.4 74.61300467 1.018867925 132 1517247 35.11 19216 SAMN40695622 SRR28523202 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_TEAGASC_1__TGS14-21__bin.5 52.89968652 0 475 1548706 35.21 3532 SAMN40695622 SRR28523202 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MASTER_WP4_TEAGASC_1__TGS14-21__bin.5 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_TEAGASC_1__TGS15-21__bin.3 83.19276897 0 99 1885590 34.93 29757 SAMN40695623 SRR28523201 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_TEAGASC_1__TGS15-21__bin.2 77.36311072 0.471698113 103 1731020 35.49 22021 SAMN40695623 SRR28523201 Ireland PRJNA1094419 SRP499185 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 WalshL_xxxx__R2__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_UNINA_2__I-21__bin.1 70.12987013 0 33 845703 50.83 38178 SAMN36689951 SRR25394945 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_UNINA_1__FO001_71775__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_UNINA_2__M-21__bin.6 82.96943231 0.145560408 39 1434370 39.17 71258 SAMN36689954 SRR25394941 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_UNINA_2__N-21__bin.3 87.33766234 0 77 1345661 50.92 26351 SAMN36689957 SRR25394938 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic FontanaF_2023__SRR20746884__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_UNINA_2__O-21__bin.1 68.95118528 1.193595342 107 1127668 39.4 15174 SAMN36689960 SRR25394935 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_UNINA_2__P-21__bin.1 53.70347266 0 36 863495 39.29 46372 SAMN36689963 SRR25395511 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_UNINA_2__S-21__bin.4 68.99923221 0.574282147 339 1134520 37.77 3724 SAMN36689992 SRR25395480 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 MASTER_WP4_UNINA_2__S-21__bin.4 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_UNINA_2__T-21__bin.2 64.91994178 0.145560408 29 1068681 39.4 52110 SAMN36689994 SRR25395477 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_UNINA_2__U-21__bin.3 60.34482759 1.724137931 48 791538 53.07 28442 SAMN36689997 SRR25395474 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF22__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_UNINA_2__V-21__bin.19 98.14814815 0.176366843 154 1636948 37.97 16695 SAMN36690000 SRR25395471 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_UNINA_2__V-21__bin.7 93.18181818 0 115 1564968 50.8 19891 SAMN36690000 SRR25395471 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_3__VB13-27__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_UNINA_2__V-21__bin.8 64.29467085 1.724137931 339 1748627 37.12 6322 SAMN36690000 SRR25395471 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MAG_S8 MASTER_WP4_UNINA_2__V-21__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus kefiranofaciens whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_UNINA_2__V-21__bin.33 71.48427673 0.754716981 35 1361257 36.42 69495 SAMN36690000 SRR25395471 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__V-25__bin.15 MASTER_WP4_UNINA_2__V-25__bin.15 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A plantarum A whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_UNINA_2__V-21__bin.39 71.39380225 1.126874039 649 3171367 46.92 5467 SAMN36690000 SRR25395471 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__V-21__bin.39 MASTER_WP4_UNINA_2__V-21__bin.39 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Shewanellaceae;Shewanella Shewanella baltica whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_UNINA_2__V-21__bin.24 84.62168493 2.046783626 601 3377261 62.4 7674 SAMN36690000 SRR25395471 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__V-21__bin.24 MASTER_WP4_UNINA_2__V-21__bin.24 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Aeromonadaceae;Aeromonas Aeromonas rivipollensis whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_UNINA_2__V-21__bin.37 73.54208925 2.205882353 711 2538223 37.67 3988 SAMN36690000 SRR25395471 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__V-21__bin.37 MASTER_WP4_UNINA_2__V-21__bin.37 Bacteroidota;Bacteroidia;Flavobacteriales;Weeksellaceae;Epilithonimonas Epilithonimonas ginsengisoli whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable MASTER_WP4_UNINA_2__V-21__bin.42 57.75862069 1.724137931 1533 4228395 64.06 2854 SAMN36690000 SRR25395471 Italy PRJNA997801 SRP450983 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. MASTER_WP4_UNINA_2__V-21__bin.42 MASTER_WP4_UNINA_2__V-21__bin.42 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Janthinobacterium Janthinobacterium sp963530105 whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable SomervilleV_2019__SRS3593113__bin.2 99.45414847 0.58224163 90 1768921 38.96 29938 SRS3593113 SRR7589560;SRR7589561 Switzerland PRJNA454439 SRP155105 NCBI Somerville, V., Lutz, S., Schmid, M., Frei, D., Moser, A., Irmler, S., Frey, J.E., and Ahrens, C.H. (2019). Long-read based de novo assembly of low-complexity metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system. BMC Microbiol. 19, 143. Wy2_bin.circ.1 SomervilleV_2019__SRS3593113__bin.2 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable SomervilleV_2019__SRS3593113__bin.1 94.48051948 0.649350649 186 1567190 50.58 11006 SRS3593113 SRR7589560;SRR7589561 Switzerland PRJNA454439 SRP155105 NCBI Somerville, V., Lutz, S., Schmid, M., Frei, D., Moser, A., Irmler, S., Frey, J.E., and Ahrens, C.H. (2019). Long-read based de novo assembly of low-complexity metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system. BMC Microbiol. 19, 143. GCF_006740305.1_ASM674030v1_genomic MASTER_WP4_FFoQSI_2__VB05-21__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii whey whey Animal Dairy milk whey liquid none lactic mesophilic not applicable EBC_140.1 93.65 0.31 81 3973119 54.41 100071 SAMN40633116 SRS20892353 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_140.1 EBC_140.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Erwinia Erwinia sp000599885 sauerkraut wild_sauerkraut_96_h Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks EBC_140.10 70.64 5.17 514 3826076 56.51 8995 SAMN40633116 SRS20892353 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 EBC_140.10 EBC_140.10 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Pantoea Pantoea brenneri sauerkraut wild_sauerkraut_96_h Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks EBC_140.5 94.23 1.08 65 4289924 53.07 103620 SAMN40633116 SRS20892353 USA PRJNA1092721 NA NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 LeechJ_xxxx__AF84__bin.30 EBC_140.5 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Lelliottia Lelliottia amnigena sauerkraut wild_sauerkraut_96_h Plant Vegetables_Aromatics cabbage pickled vegetables solid none lactic mesophilic 2-6 weeks GCF_001434655.1_ASM143465v1_genomic 99.38 0.31 107 2597852 39.58 64046 GCF_001434655.1 GCF_001434655.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3 GCF_001434655.1_ASM143465v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lentilactobacillus Lentilactobacillus hilgardii wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months GCF_020510245.1_ASM2051024v1_genomic 98.66 0 2 1892074 38.07 1870168 GCF_020510245.1 GCF_020510245.1 NA Refseq Refseq NCBI MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics Elisa B. Caffrey, Matthew R. Olm, Caroline Isabel Kothe, Joshua Evans, Justin L. Sonnenburg bioRxiv 2024.03.29.587370; doi: https://doi.org/10.1101/2024.03.29.587370 GCF_020510245.1_ASM2051024v1_genomic GCF_020510245.1_ASM2051024v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Oenococcus Oenococcus oeni wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months MAG_2 95.74 2.78 579 7983613 64.46 20454 ['SAMEA5241073', 'SAMEA5241074', 'SAMEA5241075', 'SAMEA5241076', 'SAMEA5241077', 'SAMEA5241078', 'SAMEA5241079', 'SAMEA5241080', 'SAMEA5241081', 'SAMEA5241082'] ['ERR3094540', 'ERR3094541', 'ERR3094542', 'ERR3094543', 'ERR3094544', 'ERR3094545', 'ERR3094546', 'ERR3094547', 'ERR3094548', 'ERR3094549'] Germany PRJEB30801 ERP113284 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_2 MAG_2 Pseudomonadota;Alphaproteobacteria;Rhizobiales;Xanthobacteraceae;Bradyrhizobium Bradyrhizobium sp002831585 wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months MAG_34 99.27 0.2 78 2482570 60.06 72650 ['SAMEA5241073', 'SAMEA5241074', 'SAMEA5241075', 'SAMEA5241076', 'SAMEA5241077', 'SAMEA5241078', 'SAMEA5241079', 'SAMEA5241080', 'SAMEA5241081', 'SAMEA5241082'] ['ERR3094540', 'ERR3094541', 'ERR3094542', 'ERR3094543', 'ERR3094544', 'ERR3094545', 'ERR3094546', 'ERR3094547', 'ERR3094548', 'ERR3094549'] Germany PRJEB30801 ERP113284 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_34 MAG_34 Actinomycetota;Actinomycetes;Propionibacteriales;Propionibacteriaceae;Cutibacterium Cutibacterium acnes wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months MAG_143 58.11 1.24 483 1411309 60.31 3160 ['SAMEA5241073', 'SAMEA5241074', 'SAMEA5241075', 'SAMEA5241076', 'SAMEA5241077', 'SAMEA5241078', 'SAMEA5241079', 'SAMEA5241080', 'SAMEA5241081', 'SAMEA5241082'] ['ERR3094540', 'ERR3094541', 'ERR3094542', 'ERR3094543', 'ERR3094544', 'ERR3094545', 'ERR3094546', 'ERR3094547', 'ERR3094548', 'ERR3094549'] Germany PRJEB30801 ERP113284 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_143 MAG_143 Pseudomonadota;Alphaproteobacteria;Acetobacterales;Acetobacteraceae;Acidocella NA wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months MAG_173 76.86 1.15 454 1808383 39.68 4814 ['SAMEA5241073', 'SAMEA5241074', 'SAMEA5241075', 'SAMEA5241076', 'SAMEA5241077', 'SAMEA5241078', 'SAMEA5241079', 'SAMEA5241080', 'SAMEA5241081', 'SAMEA5241082'] ['ERR3094540', 'ERR3094541', 'ERR3094542', 'ERR3094543', 'ERR3094544', 'ERR3094545', 'ERR3094546', 'ERR3094547', 'ERR3094548', 'ERR3094549'] Germany PRJEB30801 ERP113284 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. C-03.Ssa-BR MAG_173 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus sp003521145 wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months MAG_371 99.88 0.99 332 6195076 68.73 33116 ['SAMEA5241073', 'SAMEA5241074', 'SAMEA5241075', 'SAMEA5241076', 'SAMEA5241077', 'SAMEA5241078', 'SAMEA5241079', 'SAMEA5241080', 'SAMEA5241081', 'SAMEA5241082'] ['ERR3094540', 'ERR3094541', 'ERR3094542', 'ERR3094543', 'ERR3094544', 'ERR3094545', 'ERR3094546', 'ERR3094547', 'ERR3094548', 'ERR3094549'] Germany PRJEB30801 ERP113284 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_371 MAG_371 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Pelomonas NA wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months MAG_372 94.49 7.36 724 4415839 66.99 7845 ['SAMEA5241073', 'SAMEA5241074', 'SAMEA5241075', 'SAMEA5241076', 'SAMEA5241077', 'SAMEA5241078', 'SAMEA5241079', 'SAMEA5241080', 'SAMEA5241081', 'SAMEA5241082'] ['ERR3094540', 'ERR3094541', 'ERR3094542', 'ERR3094543', 'ERR3094544', 'ERR3094545', 'ERR3094546', 'ERR3094547', 'ERR3094548', 'ERR3094549'] Germany PRJEB30801 ERP113284 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_372 MAG_372 Cyanobacteriota;Sericytochromatia;S15B-MN24;UBA4093;NA NA wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months MAG_373 60.75 8.93 2732 7803143 42.74 2926 ['SAMEA5241073', 'SAMEA5241074', 'SAMEA5241075', 'SAMEA5241076', 'SAMEA5241077', 'SAMEA5241078', 'SAMEA5241079', 'SAMEA5241080', 'SAMEA5241081', 'SAMEA5241082'] ['ERR3094540', 'ERR3094541', 'ERR3094542', 'ERR3094543', 'ERR3094544', 'ERR3094545', 'ERR3094546', 'ERR3094547', 'ERR3094548', 'ERR3094549'] Germany PRJEB30801 ERP113284 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. C-03.Ssa-BR MAG_173 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus sp003521145 wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months MAG_374 65.07 7.92 1072 5256830 61.9 6565 ['SAMEA5241073', 'SAMEA5241074', 'SAMEA5241075', 'SAMEA5241076', 'SAMEA5241077', 'SAMEA5241078', 'SAMEA5241079', 'SAMEA5241080', 'SAMEA5241081', 'SAMEA5241082'] ['ERR3094540', 'ERR3094541', 'ERR3094542', 'ERR3094543', 'ERR3094544', 'ERR3094545', 'ERR3094546', 'ERR3094547', 'ERR3094548', 'ERR3094549'] Germany PRJEB30801 ERP113284 NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_374 MAG_374 Pseudomonadota;Gammaproteobacteria;Burkholderiales;Burkholderiaceae;Ralstonia NA wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Control1_A_shotgun__bin.1 77.1 0 617 8294422 31.93 25965 SRS1208457 SRR3017086 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. SternesPR_2017__Y2D1_A_shotgun__bin.3 SternesPR_2017__Y2D1_A_shotgun__bin.3 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycodaceae;Hanseniaspora Hanseniaspora uvarum wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Control1_A_shotgun__bin.2 98.1 0.1 385 11587053 36.27 47708 SRS1208457 SRR3017086 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. MASTER_WP4_UNINA_1__GO005_71775__bin.6 SternesPR_2017__Control1_A_shotgun__bin.2 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Control1_C_shotgun__bin.4 77.1 0.1 620 8339196 31.92 24013 SRS1208456 SRR3017087 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. SternesPR_2017__Y2D1_A_shotgun__bin.3 SternesPR_2017__Y2D1_A_shotgun__bin.3 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycodaceae;Hanseniaspora Hanseniaspora uvarum wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Control1_C_shotgun__bin.2 95.7 0.1 265 11306108 36.27 74963 SRS1208456 SRR3017087 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. MASTER_WP4_UNINA_1__GO005_71775__bin.6 SternesPR_2017__Control1_A_shotgun__bin.2 Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Debaryomyces Debaryomyces hansenii group 1 wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Control2_A_shotgun__bin.1 98.3 1.9 260 10954305 38.24 69170 SRS1208455 SRR3017088 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Control2_C_shotgun__bin.1 95.4 2 264 10664389 38.2 62029 SRS1208454 SRR3017089 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__T1D1_A_shotgun__bin.5 85.1780754 0 130 1034936 36.44 11967 SRS1208453 SRR3017090 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. GCF_001433825.1_ASM143382v1_genomic GCF_001433825.1_ASM143382v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Apilactobacillus Apilactobacillus kunkeei wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__T1D1_A_shotgun__bin.4 72.36425612 0.644288316 336 2309821 52.22 9254 SRS1208453 SRR3017090 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. EBC_113.1 EBC_113.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Tatumella Tatumella ptyseos wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__T1D1_A_shotgun__bin.2 71.7 0 1156 7821766 31.92 9556 SRS1208453 SRR3017090 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. SternesPR_2017__Y2D1_A_shotgun__bin.3 SternesPR_2017__Y2D1_A_shotgun__bin.3 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycodaceae;Hanseniaspora Hanseniaspora uvarum wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__T1D1_A_shotgun__bin.1 57.7 0 4037 17355180 68.48 5205 SRS1208453 SRR3017090 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. SternesPR_2017__T1D1_A_shotgun__bin.1 SternesPR_2017__T1D1_A_shotgun__bin.1 Basidiomycota;Microbotryomycetes;Sporidiobolales;Sporidiobolaceae;Rhodotorula Rhodotorula graminis wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__T1D1_A_shotgun__bin.3 75.6 0.1 892 8371510 35.22 13353 SRS1208453 SRR3017090 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. SternesPR_2017__T1D1_A_shotgun__bin.3 SternesPR_2017__T1D1_A_shotgun__bin.3 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycodaceae;Hanseniaspora Hanseniaspora opuntiae wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__T1D1_B_shotgun__bin.5 87.01140873 2.8125 156 1099581 36.44 9249 SRS1208452 SRR3017091 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. GCF_001433825.1_ASM143382v1_genomic GCF_001433825.1_ASM143382v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Apilactobacillus Apilactobacillus kunkeei wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__T1D1_B_shotgun__bin.4 86.3913136 0.235956963 207 2834856 52.05 21510 SRS1208452 SRR3017091 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. EBC_113.1 EBC_113.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Tatumella Tatumella ptyseos wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__T1D1_B_shotgun__bin.1 65.9 0.2 1195 7578471 35.23 8575 SRS1208452 SRR3017091 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. SternesPR_2017__T1D1_A_shotgun__bin.3 SternesPR_2017__T1D1_B_shotgun__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycodaceae;Hanseniaspora Hanseniaspora opuntiae wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__T1D1_B_shotgun__bin.2 69.7 0 955 7431722 32 11622 SRS1208452 SRR3017091 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. SternesPR_2017__Y2D1_A_shotgun__bin.3 SternesPR_2017__Y2D1_A_shotgun__bin.3 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycodaceae;Hanseniaspora Hanseniaspora uvarum wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__T2D1_A_shotgun__bin.2 60.34482759 0 29 2512323 51.6 191813 SRS1208451 SRR3017092 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. EBC_113.1 EBC_113.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Tatumella Tatumella ptyseos wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__T2D1_A_shotgun__bin.4 63.1 0 1696 7258578 31.92 5136 SRS1208451 SRR3017092 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. SternesPR_2017__Y2D1_A_shotgun__bin.3 SternesPR_2017__T2D1_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycodaceae;Hanseniaspora Hanseniaspora uvarum wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__T2D1_A_shotgun__bin.5 51.6 0.2 2243 8046550 46.68 3865 SRS1208451 SRR3017092 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. SternesPR_2017__Y2D1_A_shotgun__bin.5 SternesPR_2017__T2D1_A_shotgun__bin.5 Ascomycota;Saccharomycetes;Saccharomycetales;Metschnikowiaceae;Metschnikowia Metschnikowia pulcherrima wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__T2D1_A_shotgun__bin.9 98.2 1.9 324 11180874 38.23 59655 SRS1208451 SRR3017092 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__T2D1_B_shotgun__bin.8 63.4 0.2 1792 7171711 32 4744 SRS1208450 SRR3017093 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. SternesPR_2017__Y2D1_A_shotgun__bin.3 SternesPR_2017__T2D1_B_shotgun__bin.8 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycodaceae;Hanseniaspora Hanseniaspora uvarum wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__T2D1_B_shotgun__bin.9 98.1 2 304 11138085 38.21 58146 SRS1208450 SRR3017093 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__T2D3_A_shotgun__bin.6 76.8852459 0.131147541 31 2440023 51.7 133710 SRS1208449 SRR3017094 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. EBC_113.1 EBC_113.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Tatumella Tatumella ptyseos wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__T2D3_A_shotgun__bin.3 75.9 0 1059 8472344 31.9 11668 SRS1208449 SRR3017094 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. SternesPR_2017__Y2D1_A_shotgun__bin.3 SternesPR_2017__Y2D1_A_shotgun__bin.3 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycodaceae;Hanseniaspora Hanseniaspora uvarum wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__T2D3_A_shotgun__bin.4 99.1 1.9 262 11192079 38.23 70543 SRS1208449 SRR3017094 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__T2D3_B_shotgun__bin.3 76.2 0 1083 8511571 31.9 11275 SRS1208448 SRR3017095 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. SternesPR_2017__Y2D1_A_shotgun__bin.3 SternesPR_2017__Y2D1_A_shotgun__bin.3 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycodaceae;Hanseniaspora Hanseniaspora uvarum wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__T2D3_B_shotgun__bin.4 99.2 2 251 11205388 38.24 70161 SRS1208448 SRR3017095 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Y1D1_A_shotgun__bin.2 99.1 2 280 11162988 38.24 66175 SRS1208447 SRR3017096 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Y1D1_A_shotgun__bin.7 61.5 0.2 2831 9449467 46.53 3578 SRS1208447 SRR3017096 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. SternesPR_2017__Y2D1_A_shotgun__bin.5 SternesPR_2017__Y1D1_A_shotgun__bin.7 Ascomycota;Saccharomycetes;Saccharomycetales;Metschnikowiaceae;Metschnikowia Metschnikowia pulcherrima wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Y1D1_B_shotgun__bin.5 98.5 2 293 11051738 38.23 62149 SRS1208446 SRR3017097 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Y1D1_B_shotgun__bin.6 71.6 0.3 2896 10592790 46.48 4026 SRS1208446 SRR3017097 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. SternesPR_2017__Y2D1_A_shotgun__bin.5 SternesPR_2017__Y1D1_B_shotgun__bin.6 Ascomycota;Saccharomycetes;Saccharomycetales;Metschnikowiaceae;Metschnikowia Metschnikowia pulcherrima wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Y2D1_A_shotgun__bin.3 79.9 0 389 8641290 31.92 42042 SRS1208445 SRR3017098 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. SternesPR_2017__Y2D1_A_shotgun__bin.3 SternesPR_2017__Y2D1_A_shotgun__bin.3 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycodaceae;Hanseniaspora Hanseniaspora uvarum wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Y2D1_A_shotgun__bin.5 82.3 0.2 3268 13975253 45.81 5009 SRS1208445 SRR3017098 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. SternesPR_2017__Y2D1_A_shotgun__bin.5 SternesPR_2017__Y2D1_A_shotgun__bin.5 Ascomycota;Saccharomycetes;Saccharomycetales;Metschnikowiaceae;Metschnikowia Metschnikowia pulcherrima wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Y2D1_A_shotgun__bin.6 95.7 0.2 792 10889196 37.1 20606 SRS1208445 SRR3017098 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. SternesPR_2017__Y2D1_B_shotgun__bin.4 SternesPR_2017__Y2D1_B_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycodaceae;Hanseniaspora Hanseniaspora osmophila wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Y2D1_A_shotgun__bin.8 99.3 2 269 11191364 38.23 69052 SRS1208445 SRR3017098 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Y2D1_B_shotgun__bin.5 51.34660422 0 52 1681026 52.04 51771 SRS1208444 SRR3017099 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. EBC_113.1 EBC_113.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Tatumella Tatumella ptyseos wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Y2D1_B_shotgun__bin.8 57.8 0 1973 6698148 41.94 3735 SRS1208444 SRR3017099 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. MASTER_WP4_UNINA_1__AS006_71775__bin.7 SternesPR_2017__Y2D1_B_shotgun__bin.8 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Torulaspora Torulaspora delbrueckii wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Y2D1_B_shotgun__bin.9 79.7 0 464 8643490 31.92 32519 SRS1208444 SRR3017099 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. SternesPR_2017__Y2D1_A_shotgun__bin.3 SternesPR_2017__Y2D1_A_shotgun__bin.3 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycodaceae;Hanseniaspora Hanseniaspora uvarum wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Y2D1_B_shotgun__bin.1 76.9 0.4 3061 12789962 46.02 4757 SRS1208444 SRR3017099 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. SternesPR_2017__Y2D1_A_shotgun__bin.5 SternesPR_2017__Y2D1_B_shotgun__bin.1 Ascomycota;Saccharomycetes;Saccharomycetales;Metschnikowiaceae;Metschnikowia Metschnikowia pulcherrima wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Y2D1_B_shotgun__bin.2 98.1 1.9 255 11044742 38.23 70543 SRS1208444 SRR3017099 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Y2D1_B_shotgun__bin.4 96.2 0.1 784 10873761 37.12 21252 SRS1208444 SRR3017099 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. SternesPR_2017__Y2D1_B_shotgun__bin.4 SternesPR_2017__Y2D1_B_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycodaceae;Hanseniaspora Hanseniaspora osmophila wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Y2D3_A_shotgun__bin.1 87.4 0.1 1604 10108148 37.25 8495 SRS1208443 SRR3017100 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. SternesPR_2017__Y2D1_B_shotgun__bin.4 SternesPR_2017__Y2D1_B_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycodaceae;Hanseniaspora Hanseniaspora osmophila wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Y2D3_A_shotgun__bin.2 98.4 2 278 11000101 38.24 66769 SRS1208443 SRR3017100 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Y2D3_B_shotgun__bin.2 77.94223263 0.158469945 50 2594435 51.67 80622 SRS1208442 SRR3017101 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. EBC_113.1 EBC_113.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Tatumella Tatumella ptyseos wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Y2D3_B_shotgun__bin.1 99.2 2.1 283 11171065 38.23 68291 SRS1208442 SRR3017101 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Y2D3_B_shotgun__bin.3 89.9 0.1 1479 10404863 37.21 9846 SRS1208442 SRR3017101 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. SternesPR_2017__Y2D1_B_shotgun__bin.4 SternesPR_2017__Y2D1_B_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycodaceae;Hanseniaspora Hanseniaspora osmophila wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Y3D1_A_shotgun__bin.2 89.07754359 0.935088591 391 2806537 52.47 10747 SRS1208441 SRR3017102 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. EBC_113.1 EBC_113.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Tatumella Tatumella ptyseos wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Y3D1_A_shotgun__bin.6 90 0.3 3611 26056098 50.79 10601 SRS1208441 SRR3017102 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. SternesPR_2017__Y3D1_B_shotgun__bin.2 SternesPR_2017__Y3D1_A_shotgun__bin.6 Ascomycota;Dothideomycetes;Dothideales;Saccotheciaceae;Aureobasidium Aureobasidium pullulans wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Y3D1_A_shotgun__bin.1 99.3 2 290 11229123 38.22 66449 SRS1208441 SRR3017102 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Y3D1_B_shotgun__bin.2 90.3 0.3 3405 26440326 50.74 11809 SRS1208440 SRR3017103 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. SternesPR_2017__Y3D1_B_shotgun__bin.2 SternesPR_2017__Y3D1_B_shotgun__bin.2 Ascomycota;Dothideomycetes;Dothideales;Saccotheciaceae;Aureobasidium Aureobasidium pullulans wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Y3D1_B_shotgun__bin.1 98.6 2 277 11117185 38.24 67209 SRS1208440 SRR3017103 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Y3D3_A_shotgun__bin.3 68.68684503 2.035519126 556 2118497 52.45 4288 SRS1208439 SRR3017104 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. EBC_113.1 EBC_113.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Tatumella Tatumella ptyseos wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Y3D3_A_shotgun__bin.1 99.1 2.1 263 11180420 38.22 70395 SRS1208439 SRR3017104 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Y3D3_B_shotgun__bin.2 94.92349727 0.540983607 204 3262280 51.95 27009 SRS1208438 SRR3017105 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. EBC_113.1 EBC_113.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Tatumella Tatumella ptyseos wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Y3D3_B_shotgun__bin.5 59.1 0.2 5011 16516134 51.25 3577 SRS1208438 SRR3017105 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. SternesPR_2017__Y3D1_B_shotgun__bin.2 SternesPR_2017__Y3D3_B_shotgun__bin.5 Ascomycota;Dothideomycetes;Dothideales;Saccotheciaceae;Aureobasidium Aureobasidium pullulans wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months SternesPR_2017__Y3D3_B_shotgun__bin.1 98.3 2 260 11064877 38.22 70550 SRS1208438 SRR3017105 Australia PRJNA305659 SRP067433 NCBI Sternes, P.R., Lee, D., Kutyna, D.R., and Borneman, A.R. (2017). A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience 6, 1–10. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 SternesPR_2017__T2D3_A_shotgun__bin.4 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae wine wine Plant Fruit grape beverage liquid high mixed mesophilic 1-3 months Peaso_bin.1 78.84 5.43 1072 3824810 55.56 4025 SAMN33725225 SRR23816543 Denmark PRJNA943417 SRP426743 NCBI Kothe CI, Carøe C, Mazel F, Zilber D, Cruz-Morales P, Mohellibi N, Evans JD. Novel misos shape distinct microbial ecologies: opportunities for flavourful sustainable food innovation. Food Res Int. 2024 Aug;189:114490. doi: 10.1016/j.foodres.2024.114490. XieM_2019__SAMC044639__bin.32 Peaso_bin.1 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Pantoea Pantoea agglomerans miso yellow pea yellow_pea_miso Plant Legumes yellow pea other bean paste semi-solid none lactic mesophilic 1-3 months PasolliE_2019__Y001__bin.6 99.62 0 45 2280707 34.92 108416 SAMN14677884 SRR11605269 Italy PRJNA603575 SRP258112 NCBI Pasolli E, De Filippis F, Mauriello IE, Cumbo F, Walsh AM, Leech J, Cotter PD, Segata N, Ercolini D. Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat Commun. 2020 May 25;11(1):2610. doi: 10.1038/s41467-020-16438-8. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours ODFM-BA-A-0180-001_Enterococcus_faecalis_XJ76305 99.63 0 121 2892049 37.38 55590 ODFM-BA-A-0180-001 ODFM-BA-A-0180-001 NA NA NA ODFM Whon TW, Ahn SW, Yang S, Kim JY, Kim YB, Kim Y, Hong JM, Jung H, Choi YE, Lee SH, Roh SW. ODFM, an omics data resource from microorganisms associated with fermented foods. Sci Data. 2021 Apr 20;8(1):113. doi: 10.1038/s41597-021-00895-x. MASTER_WP4_CSIC_1__P2235_73323__bin.9 MASTER_WP4_CSIC_1__P2235_73323__bin.9 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus Enterococcus faecalis yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours MAG_36 84.02 7.14 54 1905255 34.49 88220 ['SAMN14677892', 'SAMN14677891', 'SAMN14677890', 'SAMN14677889', 'SAMN14677888', 'SAMN14677887', 'SAMN14677886', 'SAMN14677885', 'SAMN14677884', 'SAMN14677895', 'SAMN14677894', 'SAMN14677893', 'SAMEA5147698', 'SAMEA5147699', 'SAMEA5147700', 'SAMEA5147701', 'SAMEA5147702'] ['SRR11605259', 'SRR11605260', 'SRR11605261', 'SRR11605264', 'SRR11605265', 'SRR11605266', 'SRR11605267', 'SRR11605268', 'SRR11605269', 'SRR11605272', 'SRR11605273', 'SRR11605274', 'ERR2982980', 'ERR2982981', 'ERR2982982', 'ERR2982983', 'ERR2982984'] ['Italy', 'Ireland'] ['PRJNA603575', 'PRJEB30083'] ['SRP258112', 'ERP112494'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. PatroJN_2016__SRS1044738__bin.12 MAG_36 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus acidophilus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours MAG_55 55.57 0.06 325 929550 50.26 2946 ['SAMN14677892', 'SAMN14677891', 'SAMN14677890', 'SAMN14677889', 'SAMN14677888', 'SAMN14677887', 'SAMN14677886', 'SAMN14677885', 'SAMN14677884', 'SAMN14677895', 'SAMN14677894', 'SAMN14677893', 'SAMEA5147698', 'SAMEA5147699', 'SAMEA5147700', 'SAMEA5147701', 'SAMEA5147702'] ['SRR11605259', 'SRR11605260', 'SRR11605261', 'SRR11605264', 'SRR11605265', 'SRR11605266', 'SRR11605267', 'SRR11605268', 'SRR11605269', 'SRR11605272', 'SRR11605273', 'SRR11605274', 'ERR2982980', 'ERR2982981', 'ERR2982982', 'ERR2982983', 'ERR2982984'] ['Italy', 'Ireland'] ['PRJNA603575', 'PRJEB30083'] ['SRP258112', 'ERP112494'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_006740305.1_ASM674030v1_genomic MAG_55 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours MAG_67 96.19 4.52 486 3469796 44.12 10139 ['SAMN14677892', 'SAMN14677891', 'SAMN14677890', 'SAMN14677889', 'SAMN14677888', 'SAMN14677887', 'SAMN14677886', 'SAMN14677885', 'SAMN14677884', 'SAMN14677895', 'SAMN14677894', 'SAMN14677893', 'SAMEA5147698', 'SAMEA5147699', 'SAMEA5147700', 'SAMEA5147701', 'SAMEA5147702'] ['SRR11605259', 'SRR11605260', 'SRR11605261', 'SRR11605264', 'SRR11605265', 'SRR11605266', 'SRR11605267', 'SRR11605268', 'SRR11605269', 'SRR11605272', 'SRR11605273', 'SRR11605274', 'ERR2982980', 'ERR2982981', 'ERR2982982', 'ERR2982983', 'ERR2982984'] ['Italy', 'Ireland'] ['PRJNA603575', 'PRJEB30083'] ['SRP258112', 'ERP112494'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FalardeauJ_2023__SRR20811279__bin.3 FalardeauJ_2023__SRR20811279__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactiplantibacillus Lactiplantibacillus plantarum yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours MAG_77 82 0 64 2697753 46.18 67104 ['SAMN14677892', 'SAMN14677891', 'SAMN14677890', 'SAMN14677889', 'SAMN14677888', 'SAMN14677887', 'SAMN14677886', 'SAMN14677885', 'SAMN14677884', 'SAMN14677895', 'SAMN14677894', 'SAMN14677893', 'SAMEA5147698', 'SAMEA5147699', 'SAMEA5147700', 'SAMEA5147701', 'SAMEA5147702'] ['SRR11605259', 'SRR11605260', 'SRR11605261', 'SRR11605264', 'SRR11605265', 'SRR11605266', 'SRR11605267', 'SRR11605268', 'SRR11605269', 'SRR11605272', 'SRR11605273', 'SRR11605274', 'ERR2982980', 'ERR2982981', 'ERR2982982', 'ERR2982983', 'ERR2982984'] ['Italy', 'Ireland'] ['PRJNA603575', 'PRJEB30083'] ['SRP258112', 'ERP112494'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746951__bin.4 PatroJN_2016__SRS1044739__bin.7 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours MAG_92 87.98 3.37 340 1664794 38.55 6181 ['SAMN14677892', 'SAMN14677891', 'SAMN14677890', 'SAMN14677889', 'SAMN14677888', 'SAMN14677887', 'SAMN14677886', 'SAMN14677885', 'SAMN14677884', 'SAMN14677895', 'SAMN14677894', 'SAMN14677893', 'SAMEA5147698', 'SAMEA5147699', 'SAMEA5147700', 'SAMEA5147701', 'SAMEA5147702'] ['SRR11605259', 'SRR11605260', 'SRR11605261', 'SRR11605264', 'SRR11605265', 'SRR11605266', 'SRR11605267', 'SRR11605268', 'SRR11605269', 'SRR11605272', 'SRR11605273', 'SRR11605274', 'ERR2982980', 'ERR2982981', 'ERR2982982', 'ERR2982983', 'ERR2982984'] ['Italy', 'Ireland'] ['PRJNA603575', 'PRJEB30083'] ['SRP258112', 'ERP112494'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. Wy2_bin.circ.1 MAG_92 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours MAG_113 71.16 7.77 293 1956345 35.95 7900 ['SAMN14677892', 'SAMN14677891', 'SAMN14677890', 'SAMN14677889', 'SAMN14677888', 'SAMN14677887', 'SAMN14677886', 'SAMN14677885', 'SAMN14677884', 'SAMN14677895', 'SAMN14677894', 'SAMN14677893', 'SAMEA5147698', 'SAMEA5147699', 'SAMEA5147700', 'SAMEA5147701', 'SAMEA5147702'] ['SRR11605259', 'SRR11605260', 'SRR11605261', 'SRR11605264', 'SRR11605265', 'SRR11605266', 'SRR11605267', 'SRR11605268', 'SRR11605269', 'SRR11605272', 'SRR11605273', 'SRR11605274', 'ERR2982980', 'ERR2982981', 'ERR2982982', 'ERR2982983', 'ERR2982984'] ['Italy', 'Ireland'] ['PRJNA603575', 'PRJEB30083'] ['SRP258112', 'ERP112494'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897 MAG_113 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus cremoris yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours MAG_154 66.08 3.39 437 1519415 37.46 3858 ['SAMN14677892', 'SAMN14677891', 'SAMN14677890', 'SAMN14677889', 'SAMN14677888', 'SAMN14677887', 'SAMN14677886', 'SAMN14677885', 'SAMN14677884', 'SAMN14677895', 'SAMN14677894', 'SAMN14677893', 'SAMEA5147698', 'SAMEA5147699', 'SAMEA5147700', 'SAMEA5147701', 'SAMEA5147702'] ['SRR11605259', 'SRR11605260', 'SRR11605261', 'SRR11605264', 'SRR11605265', 'SRR11605266', 'SRR11605267', 'SRR11605268', 'SRR11605269', 'SRR11605272', 'SRR11605273', 'SRR11605274', 'ERR2982980', 'ERR2982981', 'ERR2982982', 'ERR2982983', 'ERR2982984'] ['Italy', 'Ireland'] ['PRJNA603575', 'PRJEB30083'] ['SRP258112', 'ERP112494'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. Wy2_bin.circ.1 MAG_154 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours MAG_162 98.42 0.32 54 1999502 34.67 101854 ['SAMN14677892', 'SAMN14677891', 'SAMN14677890', 'SAMN14677889', 'SAMN14677888', 'SAMN14677887', 'SAMN14677886', 'SAMN14677885', 'SAMN14677884', 'SAMN14677895', 'SAMN14677894', 'SAMN14677893', 'SAMEA5147698', 'SAMEA5147699', 'SAMEA5147700', 'SAMEA5147701', 'SAMEA5147702'] ['SRR11605259', 'SRR11605260', 'SRR11605261', 'SRR11605264', 'SRR11605265', 'SRR11605266', 'SRR11605267', 'SRR11605268', 'SRR11605269', 'SRR11605272', 'SRR11605273', 'SRR11605274', 'ERR2982980', 'ERR2982981', 'ERR2982982', 'ERR2982983', 'ERR2982984'] ['Italy', 'Ireland'] ['PRJNA603575', 'PRJEB30083'] ['SRP258112', 'ERP112494'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. PatroJN_2016__SRS1044738__bin.12 PatroJN_2016__SRS1044738__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus acidophilus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours MAG_197 55.89 0.57 753 2142533 53.51 2952 ['SAMN14677892', 'SAMN14677891', 'SAMN14677890', 'SAMN14677889', 'SAMN14677888', 'SAMN14677887', 'SAMN14677886', 'SAMN14677885', 'SAMN14677884', 'SAMN14677895', 'SAMN14677894', 'SAMN14677893', 'SAMEA5147698', 'SAMEA5147699', 'SAMEA5147700', 'SAMEA5147701', 'SAMEA5147702'] ['SRR11605259', 'SRR11605260', 'SRR11605261', 'SRR11605264', 'SRR11605265', 'SRR11605266', 'SRR11605267', 'SRR11605268', 'SRR11605269', 'SRR11605272', 'SRR11605273', 'SRR11605274', 'ERR2982980', 'ERR2982981', 'ERR2982982', 'ERR2982983', 'ERR2982984'] ['Italy', 'Ireland'] ['PRJNA603575', 'PRJEB30083'] ['SRP258112', 'ERP112494'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_197 MAG_197 Pseudomonadota;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Ewingella Ewingella sp040419245 yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours MAG_369 99.89 0.69 30 1747616 38.94 121707 ['SAMN14677892', 'SAMN14677891', 'SAMN14677890', 'SAMN14677889', 'SAMN14677888', 'SAMN14677887', 'SAMN14677886', 'SAMN14677885', 'SAMN14677884', 'SAMN14677895', 'SAMN14677894', 'SAMN14677893', 'SAMEA5147698', 'SAMEA5147699', 'SAMEA5147700', 'SAMEA5147701', 'SAMEA5147702'] ['SRR11605259', 'SRR11605260', 'SRR11605261', 'SRR11605264', 'SRR11605265', 'SRR11605266', 'SRR11605267', 'SRR11605268', 'SRR11605269', 'SRR11605272', 'SRR11605273', 'SRR11605274', 'ERR2982980', 'ERR2982981', 'ERR2982982', 'ERR2982983', 'ERR2982984'] ['Italy', 'Ireland'] ['PRJNA603575', 'PRJEB30083'] ['SRP258112', 'ERP112494'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. Wy2_bin.circ.1 MAG_392 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours MAG_370 97.27 0.29 37 1683300 39.09 77439 ['SAMN14677892', 'SAMN14677891', 'SAMN14677890', 'SAMN14677889', 'SAMN14677888', 'SAMN14677887', 'SAMN14677886', 'SAMN14677885', 'SAMN14677884', 'SAMN14677895', 'SAMN14677894', 'SAMN14677893', 'SAMEA5147698', 'SAMEA5147699', 'SAMEA5147700', 'SAMEA5147701', 'SAMEA5147702'] ['SRR11605259', 'SRR11605260', 'SRR11605261', 'SRR11605264', 'SRR11605265', 'SRR11605266', 'SRR11605267', 'SRR11605268', 'SRR11605269', 'SRR11605272', 'SRR11605273', 'SRR11605274', 'ERR2982980', 'ERR2982981', 'ERR2982982', 'ERR2982983', 'ERR2982984'] ['Italy', 'Ireland'] ['PRJNA603575', 'PRJEB30083'] ['SRP258112', 'ERP112494'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours MAG_495 73.82 9.48 93 1504775 36.43 35629 ['SAMN14677892', 'SAMN14677891', 'SAMN14677890', 'SAMN14677889', 'SAMN14677888', 'SAMN14677887', 'SAMN14677886', 'SAMN14677885', 'SAMN14677884', 'SAMN14677895', 'SAMN14677894', 'SAMN14677893', 'SAMEA5147698', 'SAMEA5147699', 'SAMEA5147700', 'SAMEA5147701', 'SAMEA5147702'] ['SRR11605259', 'SRR11605260', 'SRR11605261', 'SRR11605264', 'SRR11605265', 'SRR11605266', 'SRR11605267', 'SRR11605268', 'SRR11605269', 'SRR11605272', 'SRR11605273', 'SRR11605274', 'ERR2982980', 'ERR2982981', 'ERR2982982', 'ERR2982983', 'ERR2982984'] ['Italy', 'Ireland'] ['PRJNA603575', 'PRJEB30083'] ['SRP258112', 'ERP112494'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746979__bin.3 MAG_499 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours MAG_496 51.74 9.49 612 1430200 44.42 2315 ['SAMN14677892', 'SAMN14677891', 'SAMN14677890', 'SAMN14677889', 'SAMN14677888', 'SAMN14677887', 'SAMN14677886', 'SAMN14677885', 'SAMN14677884', 'SAMN14677895', 'SAMN14677894', 'SAMN14677893', 'SAMEA5147698', 'SAMEA5147699', 'SAMEA5147700', 'SAMEA5147701', 'SAMEA5147702'] ['SRR11605259', 'SRR11605260', 'SRR11605261', 'SRR11605264', 'SRR11605265', 'SRR11605266', 'SRR11605267', 'SRR11605268', 'SRR11605269', 'SRR11605272', 'SRR11605273', 'SRR11605274', 'ERR2982980', 'ERR2982981', 'ERR2982982', 'ERR2982983', 'ERR2982984'] ['Italy', 'Ireland'] ['PRJNA603575', 'PRJEB30083'] ['SRP258112', 'ERP112494'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_496 MAG_496 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus NA yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours MAG_497 59.91 9.97 345 1958495 57.61 8369 ['SAMN14677892', 'SAMN14677891', 'SAMN14677890', 'SAMN14677889', 'SAMN14677888', 'SAMN14677887', 'SAMN14677886', 'SAMN14677885', 'SAMN14677884', 'SAMN14677895', 'SAMN14677894', 'SAMN14677893', 'SAMEA5147698', 'SAMEA5147699', 'SAMEA5147700', 'SAMEA5147701', 'SAMEA5147702'] ['SRR11605259', 'SRR11605260', 'SRR11605261', 'SRR11605264', 'SRR11605265', 'SRR11605266', 'SRR11605267', 'SRR11605268', 'SRR11605269', 'SRR11605272', 'SRR11605273', 'SRR11605274', 'ERR2982980', 'ERR2982981', 'ERR2982982', 'ERR2982983', 'ERR2982984'] ['Italy', 'Ireland'] ['PRJNA603575', 'PRJEB30083'] ['SRP258112', 'ERP112494'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. PasolliE_2020__SRS6525478__bin.8 MAG_497 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium breve yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours MAG_498 96.26 0 20 2676482 46.79 165750 ['SAMN14677892', 'SAMN14677891', 'SAMN14677890', 'SAMN14677889', 'SAMN14677888', 'SAMN14677887', 'SAMN14677886', 'SAMN14677885', 'SAMN14677884', 'SAMN14677895', 'SAMN14677894', 'SAMN14677893', 'SAMEA5147698', 'SAMEA5147699', 'SAMEA5147700', 'SAMEA5147701', 'SAMEA5147702'] ['SRR11605259', 'SRR11605260', 'SRR11605261', 'SRR11605264', 'SRR11605265', 'SRR11605266', 'SRR11605267', 'SRR11605268', 'SRR11605269', 'SRR11605272', 'SRR11605273', 'SRR11605274', 'ERR2982980', 'ERR2982981', 'ERR2982982', 'ERR2982983', 'ERR2982984'] ['Italy', 'Ireland'] ['PRJNA603575', 'PRJEB30083'] ['SRP258112', 'ERP112494'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. CM_UNINA_FFOOD__FFOOD_337__bin.6 CM_UNINA_FFOOD__FFOOD_337__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus rhamnosus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours MAG_499 85.18 2.74 73 1451796 36 35629 ['SAMN14677892', 'SAMN14677891', 'SAMN14677890', 'SAMN14677889', 'SAMN14677888', 'SAMN14677887', 'SAMN14677886', 'SAMN14677885', 'SAMN14677884', 'SAMN14677895', 'SAMN14677894', 'SAMN14677893', 'SAMEA5147698', 'SAMEA5147699', 'SAMEA5147700', 'SAMEA5147701', 'SAMEA5147702'] ['SRR11605259', 'SRR11605260', 'SRR11605261', 'SRR11605264', 'SRR11605265', 'SRR11605266', 'SRR11605267', 'SRR11605268', 'SRR11605269', 'SRR11605272', 'SRR11605273', 'SRR11605274', 'ERR2982980', 'ERR2982981', 'ERR2982982', 'ERR2982983', 'ERR2982984'] ['Italy', 'Ireland'] ['PRJNA603575', 'PRJEB30083'] ['SRP258112', 'ERP112494'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. FontanaF_2023__SRR20746979__bin.3 MAG_499 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours MAG_500 99.18 0.14 119 3296849 46.7 47297 ['SAMN14677892', 'SAMN14677891', 'SAMN14677890', 'SAMN14677889', 'SAMN14677888', 'SAMN14677887', 'SAMN14677886', 'SAMN14677885', 'SAMN14677884', 'SAMN14677895', 'SAMN14677894', 'SAMN14677893', 'SAMEA5147698', 'SAMEA5147699', 'SAMEA5147700', 'SAMEA5147701', 'SAMEA5147702'] ['SRR11605259', 'SRR11605260', 'SRR11605261', 'SRR11605264', 'SRR11605265', 'SRR11605266', 'SRR11605267', 'SRR11605268', 'SRR11605269', 'SRR11605272', 'SRR11605273', 'SRR11605274', 'ERR2982980', 'ERR2982981', 'ERR2982982', 'ERR2982983', 'ERR2982984'] ['Italy', 'Ireland'] ['PRJNA603575', 'PRJEB30083'] ['SRP258112', 'ERP112494'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_500 MAG_500 Bacillota;Bacilli;Bacillales_B;Bacillaceae_C;Weizmannia Weizmannia faecalis yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours MAG_501 100 0 46 2288455 34.95 108756 ['SAMN14677892', 'SAMN14677891', 'SAMN14677890', 'SAMN14677889', 'SAMN14677888', 'SAMN14677887', 'SAMN14677886', 'SAMN14677885', 'SAMN14677884', 'SAMN14677895', 'SAMN14677894', 'SAMN14677893', 'SAMEA5147698', 'SAMEA5147699', 'SAMEA5147700', 'SAMEA5147701', 'SAMEA5147702'] ['SRR11605259', 'SRR11605260', 'SRR11605261', 'SRR11605264', 'SRR11605265', 'SRR11605266', 'SRR11605267', 'SRR11605268', 'SRR11605269', 'SRR11605272', 'SRR11605273', 'SRR11605274', 'ERR2982980', 'ERR2982981', 'ERR2982982', 'ERR2982983', 'ERR2982984'] ['Italy', 'Ireland'] ['PRJNA603575', 'PRJEB30083'] ['SRP258112', 'ERP112494'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours MAG_502 100 0 19 1924349 60.41 291706 ['SAMN14677892', 'SAMN14677891', 'SAMN14677890', 'SAMN14677889', 'SAMN14677888', 'SAMN14677887', 'SAMN14677886', 'SAMN14677885', 'SAMN14677884', 'SAMN14677895', 'SAMN14677894', 'SAMN14677893', 'SAMEA5147698', 'SAMEA5147699', 'SAMEA5147700', 'SAMEA5147701', 'SAMEA5147702'] ['SRR11605259', 'SRR11605260', 'SRR11605261', 'SRR11605264', 'SRR11605265', 'SRR11605266', 'SRR11605267', 'SRR11605268', 'SRR11605269', 'SRR11605272', 'SRR11605273', 'SRR11605274', 'ERR2982980', 'ERR2982981', 'ERR2982982', 'ERR2982983', 'ERR2982984'] ['Italy', 'Ireland'] ['PRJNA603575', 'PRJEB30083'] ['SRP258112', 'ERP112494'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. MAG_502 MAG_502 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium animalis yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours MAG_503 99.03 0 48 1814841 49.75 104841 ['SAMN14677892', 'SAMN14677891', 'SAMN14677890', 'SAMN14677889', 'SAMN14677888', 'SAMN14677887', 'SAMN14677886', 'SAMN14677885', 'SAMN14677884', 'SAMN14677895', 'SAMN14677894', 'SAMN14677893', 'SAMEA5147698', 'SAMEA5147699', 'SAMEA5147700', 'SAMEA5147701', 'SAMEA5147702'] ['SRR11605259', 'SRR11605260', 'SRR11605261', 'SRR11605264', 'SRR11605265', 'SRR11605266', 'SRR11605267', 'SRR11605268', 'SRR11605269', 'SRR11605272', 'SRR11605273', 'SRR11605274', 'ERR2982980', 'ERR2982981', 'ERR2982982', 'ERR2982983', 'ERR2982984'] ['Italy', 'Ireland'] ['PRJNA603575', 'PRJEB30083'] ['SRP258112', 'ERP112494'] NCBI Du R, Xiong W, Xu L, Xu Y, Wu Q. Metagenomics reveals the habitat specificity of biosynthetic potential of secondary metabolites in global food fermentations. Microbiome. 2023 May 20;11(1):115. doi: 10.1186/s40168-023-01536-8. GCF_006740305.1_ASM674030v1_genomic MAG_503 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours LeechJ_2020__ERS3967743__bin.2 97.87117904 0.363901019 49 1636923 39.07 67033 ERS3967743 ERR4757858 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. Wy2_bin.circ.1 MAG_392 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours LeechJ_2020__ERS3967743__bin.1 60.34482759 0 16 1033204 46.74 111022 ERS3967743 ERR4757858 Ireland PRJEB35321 ERP118359 NCBI Leech, J., Cabrera-Rubio, R., Walsh, A.M., Macori, G., Walsh, C.J., Barton, W., Finnegan, L., Crispie, F., O’Sullivan, O., Claesson, M.J., et al. (2020). Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5. 10.1128/mSystems.00522-20. FontanaF_2023__SRR20746951__bin.4 MAG_353 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lacticaseibacillus Lacticaseibacillus paracasei yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours LordanR_2019__ERS2955443__bin.6 58.62068966 0 28 1167459 38.84 61117 ERS2955443 ERR2982980 Ireland PRJEB30083 ERP112494 NCBI Lordan, R., Walsh, A.M., Crispie, F., Finnegan, L., Cotter, P.D., and Zabetakis, I. (2019). The effect of ovine milk fermentation on the antithrombotic properties of polar lipids. J. Funct. Foods 54, 289–300. Wy2_bin.circ.1 MAG_392 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours LordanR_2019__ERS2955443__bin.2 55.17241379 0 13 518724 51.15 124681 ERS2955443 ERR2982980 Ireland PRJEB30083 ERP112494 NCBI Lordan, R., Walsh, A.M., Crispie, F., Finnegan, L., Cotter, P.D., and Zabetakis, I. (2019). The effect of ovine milk fermentation on the antithrombotic properties of polar lipids. J. Funct. Foods 54, 289–300. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours LordanR_2019__ERS2955444__bin.2 95.78446663 0.717404866 182 1580655 39.22 12316 ERS2955444 ERR2982981 Ireland PRJEB30083 ERP112494 NCBI Lordan, R., Walsh, A.M., Crispie, F., Finnegan, L., Cotter, P.D., and Zabetakis, I. (2019). The effect of ovine milk fermentation on the antithrombotic properties of polar lipids. J. Funct. Foods 54, 289–300. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours LordanR_2019__ERS2955444__bin.3 93.25244931 0 125 1507268 50.8 17411 ERS2955444 ERR2982981 Ireland PRJEB30083 ERP112494 NCBI Lordan, R., Walsh, A.M., Crispie, F., Finnegan, L., Cotter, P.D., and Zabetakis, I. (2019). The effect of ovine milk fermentation on the antithrombotic properties of polar lipids. J. Funct. Foods 54, 289–300. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours LordanR_2019__ERS2955444__bin.1 64.72761375 1.028138528 358 1200825 35.46 3654 ERS2955444 ERR2982981 Ireland PRJEB30083 ERP112494 NCBI Lordan, R., Walsh, A.M., Crispie, F., Finnegan, L., Cotter, P.D., and Zabetakis, I. (2019). The effect of ovine milk fermentation on the antithrombotic properties of polar lipids. J. Funct. Foods 54, 289–300. PatroJN_2016__SRS1044738__bin.12 LordanR_2019__ERS2955444__bin.1 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus acidophilus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours LordanR_2019__ERS2955445__bin.4 99.45414847 0.291120815 79 1741838 38.96 37874 ERS2955445 ERR2982982 Ireland PRJEB30083 ERP112494 NCBI Lordan, R., Walsh, A.M., Crispie, F., Finnegan, L., Cotter, P.D., and Zabetakis, I. (2019). The effect of ovine milk fermentation on the antithrombotic properties of polar lipids. J. Funct. Foods 54, 289–300. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours LordanR_2019__ERS2955445__bin.1 85.60246914 0.819047619 207 1552205 60.82 10365 ERS2955445 ERR2982982 Ireland PRJEB30083 ERP112494 NCBI Lordan, R., Walsh, A.M., Crispie, F., Finnegan, L., Cotter, P.D., and Zabetakis, I. (2019). The effect of ovine milk fermentation on the antithrombotic properties of polar lipids. J. Funct. Foods 54, 289–300. MAG_502 MAG_502 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium animalis yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours LordanR_2019__ERS2955445__bin.2 53.44827586 0.862068966 316 1361576 34.92 5099 ERS2955445 ERR2982982 Ireland PRJEB30083 ERP112494 NCBI Lordan, R., Walsh, A.M., Crispie, F., Finnegan, L., Cotter, P.D., and Zabetakis, I. (2019). The effect of ovine milk fermentation on the antithrombotic properties of polar lipids. J. Funct. Foods 54, 289–300. PatroJN_2016__SRS1044738__bin.12 PatroJN_2016__SRS1044738__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus acidophilus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours LordanR_2019__ERS2955446__bin.3 58.10043668 0.145560408 29 946912 39.95 41238 ERS2955446 ERR2982983 Ireland PRJEB30083 ERP112494 NCBI Lordan, R., Walsh, A.M., Crispie, F., Finnegan, L., Cotter, P.D., and Zabetakis, I. (2019). The effect of ovine milk fermentation on the antithrombotic properties of polar lipids. J. Funct. Foods 54, 289–300. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours LordanR_2019__ERS2955446__bin.1 63.86075874 0.86038961 352 1166737 35.42 3580 ERS2955446 ERR2982983 Ireland PRJEB30083 ERP112494 NCBI Lordan, R., Walsh, A.M., Crispie, F., Finnegan, L., Cotter, P.D., and Zabetakis, I. (2019). The effect of ovine milk fermentation on the antithrombotic properties of polar lipids. J. Funct. Foods 54, 289–300. PatroJN_2016__SRS1044738__bin.12 PatroJN_2016__SRS1044738__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus acidophilus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours LordanR_2019__ERS2955447__bin.2 65.94406321 0 51 1107901 39.55 35674 ERS2955447 ERR2982984 Ireland PRJEB30083 ERP112494 NCBI Lordan, R., Walsh, A.M., Crispie, F., Finnegan, L., Cotter, P.D., and Zabetakis, I. (2019). The effect of ovine milk fermentation on the antithrombotic properties of polar lipids. J. Funct. Foods 54, 289–300. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours PasolliE_2020__SRS6525472__bin.1 65.356623 0.851058835 152 1049316 39.66 9178 SRS6525472 SRR11605261 Italy PRJNA603575 SRP258112 NCBI Pasolli, E., De Filippis, F., Mauriello, I.E., Cumbo, F., Walsh, A.M., Leech, J., Cotter, P.D., Segata, N., and Ercolini, D. (2020). Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat. Commun. 11, 2610. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours PasolliE_2020__SRS6525474__bin.2 58.15580162 0.688292784 133 888647 39.9 8594 SRS6525474 SRR11605259 Italy PRJNA603575 SRP258112 NCBI Pasolli, E., De Filippis, F., Mauriello, I.E., Cumbo, F., Walsh, A.M., Leech, J., Cotter, P.D., Segata, N., and Ercolini, D. (2020). Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat. Commun. 11, 2610. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours PasolliE_2020__SRS6525474__bin.1 80.51948052 0 23 1092602 50.6 112296 SRS6525474 SRR11605259 Italy PRJNA603575 SRP258112 NCBI Pasolli, E., De Filippis, F., Mauriello, I.E., Cumbo, F., Walsh, A.M., Leech, J., Cotter, P.D., Segata, N., and Ercolini, D. (2020). Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat. Commun. 11, 2610. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours PasolliE_2020__SRS6525475__bin.2 96.2154294 1.028020378 167 1617841 39.13 17301 SRS6525475 SRR11605274 Italy PRJNA603575 SRP258112 NCBI Pasolli, E., De Filippis, F., Mauriello, I.E., Cumbo, F., Walsh, A.M., Leech, J., Cotter, P.D., Segata, N., and Ercolini, D. (2020). Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat. Commun. 11, 2610. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours PasolliE_2020__SRS6525476__bin.1 96.87045124 0.873362445 134 1607348 39.14 18593 SRS6525476 SRR11605273 Italy PRJNA603575 SRP258112 NCBI Pasolli, E., De Filippis, F., Mauriello, I.E., Cumbo, F., Walsh, A.M., Leech, J., Cotter, P.D., Segata, N., and Ercolini, D. (2020). Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat. Commun. 11, 2610. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours PasolliE_2020__SRS6525480__bin.2 100 0.378787879 52 2263265 34.93 98338 SRS6525480 SRR11605269 Italy PRJNA603575 SRP258112 NCBI Pasolli, E., De Filippis, F., Mauriello, I.E., Cumbo, F., Walsh, A.M., Leech, J., Cotter, P.D., Segata, N., and Ercolini, D. (2020). Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat. Commun. 11, 2610. MAG_501 MAG_501 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours PasolliE_2020__SRS6525480__bin.4 98.95508422 0.145560408 35 1714735 38.88 90485 SRS6525480 SRR11605269 Italy PRJNA603575 SRP258112 NCBI Pasolli, E., De Filippis, F., Mauriello, I.E., Cumbo, F., Walsh, A.M., Leech, J., Cotter, P.D., Segata, N., and Ercolini, D. (2020). Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat. Commun. 11, 2610. Wy2_bin.circ.1 CM_UNINA_FFOOD__FFOOD_392__bin.3 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours PasolliE_2020__SRS6525480__bin.1 97.07398662 0.358851675 131 1644322 50.35 25074 SRS6525480 SRR11605269 Italy PRJNA603575 SRP258112 NCBI Pasolli, E., De Filippis, F., Mauriello, I.E., Cumbo, F., Walsh, A.M., Leech, J., Cotter, P.D., Segata, N., and Ercolini, D. (2020). Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat. Commun. 11, 2610. GCF_006740305.1_ASM674030v1_genomic MAG_503 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours PasolliE_2020__SRS6525480__bin.5 63.91111111 0 16 1168488 59.79 100942 SRS6525480 SRR11605269 Italy PRJNA603575 SRP258112 NCBI Pasolli, E., De Filippis, F., Mauriello, I.E., Cumbo, F., Walsh, A.M., Leech, J., Cotter, P.D., Segata, N., and Ercolini, D. (2020). Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat. Commun. 11, 2610. MAG_502 MAG_502 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium animalis yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours PasolliE_2020__SRS6525481__bin.1 78.79609413 0.9814567 271 1189500 39.49 5404 SRS6525481 SRR11605268 Italy PRJNA603575 SRP258112 NCBI Pasolli, E., De Filippis, F., Mauriello, I.E., Cumbo, F., Walsh, A.M., Leech, J., Cotter, P.D., Segata, N., and Ercolini, D. (2020). Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat. Commun. 11, 2610. Wy2_bin.circ.1 MAG_392 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours PasolliE_2020__SRS6525482__bin.1 67.18843141 0.618631732 146 1026216 39.73 9054 SRS6525482 SRR11605267 Italy PRJNA603575 SRP258112 NCBI Pasolli, E., De Filippis, F., Mauriello, I.E., Cumbo, F., Walsh, A.M., Leech, J., Cotter, P.D., Segata, N., and Ercolini, D. (2020). Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat. Commun. 11, 2610. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours PasolliE_2020__SRS6525483__bin.3 91.45872323 1.717612809 206 1493039 39.45 11025 SRS6525483 SRR11605266 Italy PRJNA603575 SRP258112 NCBI Pasolli, E., De Filippis, F., Mauriello, I.E., Cumbo, F., Walsh, A.M., Leech, J., Cotter, P.D., Segata, N., and Ercolini, D. (2020). Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat. Commun. 11, 2610. Wy2_bin.circ.1 MAG_392 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours PasolliE_2020__SRS6525484__bin.1 62.58066473 0.309315866 146 950224 39.31 8595 SRS6525484 SRR11605265 Italy PRJNA603575 SRP258112 NCBI Pasolli, E., De Filippis, F., Mauriello, I.E., Cumbo, F., Walsh, A.M., Leech, J., Cotter, P.D., Segata, N., and Ercolini, D. (2020). Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat. Commun. 11, 2610. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours PasolliE_2020__SRS6525485__bin.1 88.28238719 0.318413392 168 1395151 39.63 11190 SRS6525485 SRR11605264 Italy PRJNA603575 SRP258112 NCBI Pasolli, E., De Filippis, F., Mauriello, I.E., Cumbo, F., Walsh, A.M., Leech, J., Cotter, P.D., Segata, N., and Ercolini, D. (2020). Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nat. Commun. 11, 2610. Wy2_bin.circ.1 Wy2_bin.circ.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours ShangpliangH_2023_a__SRR22851167__bin.1 84.61 0.65 128 1532886 50.7 16646 SAMN32352139 SRR22851167 India PRJNA914731 SRP414323 NCBI Shangpliang HNJ, Tamang JP. Metagenome-assembled genomes for biomarkers of bio-functionalities in Laal dahi, an Indian ethnic fermented milk product. Int J Food Microbiol. 2023 Oct 2;402:110300. doi: 10.1016/j.ijfoodmicro.2023.110300. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours ShangpliangH_2023_a__SRR22851167__bin.3 90.91 0.51 209 1728653 36.3 13386 SAMN32352139 SRR22851167 India PRJNA914731 SRP414323 NCBI Shangpliang HNJ, Tamang JP. Metagenome-assembled genomes for biomarkers of bio-functionalities in Laal dahi, an Indian ethnic fermented milk product. Int J Food Microbiol. 2023 Oct 2;402:110300. doi: 10.1016/j.ijfoodmicro.2023.110300. FontanaF_2023__SRR20746979__bin.3 ShangpliangH_2023_a__SRR22851167__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours ShangpliangH_2023_a__SRR22851167__bin.5 97.72 3.44 110 1705568 38.98 30177 SAMN32352139 SRR22851167 India PRJNA914731 SRP414323 NCBI Shangpliang HNJ, Tamang JP. Metagenome-assembled genomes for biomarkers of bio-functionalities in Laal dahi, an Indian ethnic fermented milk product. Int J Food Microbiol. 2023 Oct 2;402:110300. doi: 10.1016/j.ijfoodmicro.2023.110300. Wy2_bin.circ.1 MAG_392 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours ShangpliangH_2023_a__SRR22851167__bin.6 94.89 3.24 65 1910041 37.7 60303 SAMN32352139 SRR22851167 India PRJNA914731 SRP414323 NCBI Shangpliang HNJ, Tamang JP. Metagenome-assembled genomes for biomarkers of bio-functionalities in Laal dahi, an Indian ethnic fermented milk product. Int J Food Microbiol. 2023 Oct 2;402:110300. doi: 10.1016/j.ijfoodmicro.2023.110300. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours ShangpliangH_2023_a__SRR22851167__bin.7 95.77 2.89 108 2002348 39 29319 SAMN32352139 SRR22851167 India PRJNA914731 SRP414323 NCBI Shangpliang HNJ, Tamang JP. Metagenome-assembled genomes for biomarkers of bio-functionalities in Laal dahi, an Indian ethnic fermented milk product. Int J Food Microbiol. 2023 Oct 2;402:110300. doi: 10.1016/j.ijfoodmicro.2023.110300. ShangpliangH_2023_a__SRR22851168__bin.15 ShangpliangH_2023_a__SRR22851168__bin.15 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A chungangensis yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours ShangpliangH_2023_a__SRR22851167__bin.8 100 1.31 60 2368222 35.02 91727 SAMN32352139 SRR22851167 India PRJNA914731 SRP414323 NCBI Shangpliang HNJ, Tamang JP. Metagenome-assembled genomes for biomarkers of bio-functionalities in Laal dahi, an Indian ethnic fermented milk product. Int J Food Microbiol. 2023 Oct 2;402:110300. doi: 10.1016/j.ijfoodmicro.2023.110300. MAG_501 ShangpliangH_2023_a__SRR22851167__bin.8 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours ShangpliangH_2023_a__SRR22851168__bin.10 59.99 0.3 37 1365041 34.87 168074 SAMN32352138 SRR22851168 India PRJNA914731 SRP414323 NCBI Shangpliang HNJ, Tamang JP. Metagenome-assembled genomes for biomarkers of bio-functionalities in Laal dahi, an Indian ethnic fermented milk product. Int J Food Microbiol. 2023 Oct 2;402:110300. doi: 10.1016/j.ijfoodmicro.2023.110300. MAG_501 ShangpliangH_2023_a__SRR22851167__bin.8 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus Lactococcus lactis yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours ShangpliangH_2023_a__SRR22851168__bin.11 92.4 1.89 128 1778906 38.73 22553 SAMN32352138 SRR22851168 India PRJNA914731 SRP414323 NCBI Shangpliang HNJ, Tamang JP. Metagenome-assembled genomes for biomarkers of bio-functionalities in Laal dahi, an Indian ethnic fermented milk product. Int J Food Microbiol. 2023 Oct 2;402:110300. doi: 10.1016/j.ijfoodmicro.2023.110300. Wy2_bin.circ.1 MAG_392 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus thermophilus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours ShangpliangH_2023_a__SRR22851168__bin.12 86.9 1.56 201 1750936 36.35 12628 SAMN32352138 SRR22851168 India PRJNA914731 SRP414323 NCBI Shangpliang HNJ, Tamang JP. Metagenome-assembled genomes for biomarkers of bio-functionalities in Laal dahi, an Indian ethnic fermented milk product. Int J Food Microbiol. 2023 Oct 2;402:110300. doi: 10.1016/j.ijfoodmicro.2023.110300. FontanaF_2023__SRR20746979__bin.3 ShangpliangH_2023_a__SRR22851167__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus helveticus yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours ShangpliangH_2023_a__SRR22851168__bin.15 95.6 2.11 126 2142807 38.7 25763 SAMN32352138 SRR22851168 India PRJNA914731 SRP414323 NCBI Shangpliang HNJ, Tamang JP. Metagenome-assembled genomes for biomarkers of bio-functionalities in Laal dahi, an Indian ethnic fermented milk product. Int J Food Microbiol. 2023 Oct 2;402:110300. doi: 10.1016/j.ijfoodmicro.2023.110300. ShangpliangH_2023_a__SRR22851168__bin.15 ShangpliangH_2023_a__SRR22851168__bin.15 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Lactococcus_A Lactococcus A chungangensis yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours ShangpliangH_2023_a__SRR22851168__bin.16 76.24 1.79 382 1538477 38.83 4738 SAMN32352138 SRR22851168 India PRJNA914731 SRP414323 NCBI Shangpliang HNJ, Tamang JP. Metagenome-assembled genomes for biomarkers of bio-functionalities in Laal dahi, an Indian ethnic fermented milk product. Int J Food Microbiol. 2023 Oct 2;402:110300. doi: 10.1016/j.ijfoodmicro.2023.110300. MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc citreum yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours ShangpliangH_2023_a__SRR22851168__bin.17 70.25 0.54 400 1451827 64.15 4132 SAMN32352138 SRR22851168 India PRJNA914731 SRP414323 NCBI Shangpliang HNJ, Tamang JP. Metagenome-assembled genomes for biomarkers of bio-functionalities in Laal dahi, an Indian ethnic fermented milk product. Int J Food Microbiol. 2023 Oct 2;402:110300. doi: 10.1016/j.ijfoodmicro.2023.110300. CM_UNINA_FFOOD__FFOOD_296__bin.3 ShangpliangH_2023_a__SRR22851168__bin.17 Actinomycetota;Actinomycetes;Actinomycetales;Bifidobacteriaceae;Bifidobacterium Bifidobacterium mongoliense yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours ShangpliangH_2023_a__SRR22851168__bin.2 77.73 1.01 76 1219921 50.51 28555 SAMN32352138 SRR22851168 India PRJNA914731 SRP414323 NCBI Shangpliang HNJ, Tamang JP. Metagenome-assembled genomes for biomarkers of bio-functionalities in Laal dahi, an Indian ethnic fermented milk product. Int J Food Microbiol. 2023 Oct 2;402:110300. doi: 10.1016/j.ijfoodmicro.2023.110300. GCF_006740305.1_ASM674030v1_genomic MAG_151 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours ShangpliangH_2023_a__SRR22851168__bin.8 99.97 1.98 60 1962805 37.71 59844 SAMN32352138 SRR22851168 India PRJNA914731 SRP414323 NCBI Shangpliang HNJ, Tamang JP. Metagenome-assembled genomes for biomarkers of bio-functionalities in Laal dahi, an Indian ethnic fermented milk product. Int J Food Microbiol. 2023 Oct 2;402:110300. doi: 10.1016/j.ijfoodmicro.2023.110300. GCF_009913915.1_ASM991391v1_genomic GCF_009913915.1_ASM991391v1_genomic Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Leuconostoc Leuconostoc mesenteroides yogurt yogurt Animal Dairy milk yogurt semi-solid none lactic thermophilic 4-8 hours LeechJ_xxxx__AF26__bin.8 56.89655172 0 128 875337 53.85 9432 SAMN39472445 SRR27593224 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF26__bin.8 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum zonkom zonkom Plant Grain millet beverage liquid low mixed mesophilic 1-3 days LeechJ_xxxx__AF26__bin.3 66.37931034 0.862068966 376 1444023 42.19 4369 SAMN39472445 SRR27593224 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. CM_UNINA_FFOOD__FFOOD_425__bin.9 LeechJ_xxxx__AF26__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici zonkom zonkom Plant Grain millet beverage liquid low mixed mesophilic 1-3 days LeechJ_xxxx__AF26__bin.6 59.48275862 0 361 1403020 42.29 4483 SAMN39472445 SRR27593224 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF49__bin.4 LeechJ_xxxx__AF26__bin.6 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Pediococcus Pediococcus acidilactici A zonkom zonkom Plant Grain millet beverage liquid low mixed mesophilic 1-3 days LeechJ_xxxx__AF26__bin.15 93.05811015 2.059694691 248 1509271 51.16 7678 SAMN39472445 SRR27593224 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic LeechJ_xxxx__AF26__bin.15 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii zonkom zonkom Plant Grain millet beverage liquid low mixed mesophilic 1-3 days LeechJ_xxxx__AF26__bin.2 76.55403087 0.578616352 564 2156283 38.52 4449 SAMN39472445 SRR27593224 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0139-001_Enterococcus_lactis_CICC_24101 LeechJ_xxxx__AF26__bin.2 Bacillota;Bacilli;Lactobacillales;Enterococcaceae;Enterococcus_B Enterococcus B lactis zonkom zonkom Plant Grain millet beverage liquid low mixed mesophilic 1-3 days LeechJ_xxxx__AF26__bin.12 78.84901199 1.661907028 584 2173436 33.82 4500 SAMN39472445 SRR27593224 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. PatroJN_2016__SRS1044731__bin.7 LeechJ_xxxx__AF26__bin.12 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus Ligilactobacillus salivarius zonkom zonkom Plant Grain millet beverage liquid low mixed mesophilic 1-3 days LeechJ_xxxx__AF26__bin.11 67.98298082 1.657940663 347 1402492 42.27 5018 SAMN39472445 SRR27593224 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YulandiA_2020__SRS6115052__bin.11 LeechJ_xxxx__AF26__bin.11 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus Ligilactobacillus agilis zonkom zonkom Plant Grain millet beverage liquid low mixed mesophilic 1-3 days LeechJ_xxxx__AF26__bin.5 80 0.1 170 9113064 35.61 120493 SAMN39472445 SRR27593224 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF26__bin.5 LeechJ_xxxx__AF26__bin.5 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycodaceae;Hanseniaspora unknown zonkom zonkom Plant Grain millet beverage liquid low mixed mesophilic 1-3 days LeechJ_xxxx__AF26__bin.14 70.9 0.1 2372 9170349 47.15 4457 SAMN39472445 SRR27593224 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF26__bin.14 LeechJ_xxxx__AF26__bin.14 Ascomycota;Saccharomycetes;Saccharomycetales;unknown;unknown unknown zonkom zonkom Plant Grain millet beverage liquid low mixed mesophilic 1-3 days LeechJ_xxxx__AF29__bin.4 58.528997 0 136 895078 53.16 9169 SAMN39472448 SRR27593221 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. FontanaF_2023__SRR20746839__bin.4 LeechJ_xxxx__AF66__bin.9 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus fermentum zonkom zonkom Plant Grain millet beverage liquid low mixed mesophilic 1-3 days LeechJ_xxxx__AF29__bin.9 98.26628005 1.061173533 169 1677959 37.78 15685 SAMN39472448 SRR27593221 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. WalshAM_2017__ERS1739834__bin.1 WalshAM_2017__ERS1739834__bin.1 Bacillota;Bacilli;Lactobacillales;Streptococcaceae;Streptococcus Streptococcus infantarius zonkom zonkom Plant Grain millet beverage liquid low mixed mesophilic 1-3 days LeechJ_xxxx__AF29__bin.12 97.14673913 0.815217391 94 1748710 38.82 28215 SAMN39472448 SRR27593221 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF78__bin.4 LeechJ_xxxx__AF78__bin.4 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus reuteri zonkom zonkom Plant Grain millet beverage liquid low mixed mesophilic 1-3 days LeechJ_xxxx__AF29__bin.3 89.42345533 1.64973014 224 1410811 51.25 8234 SAMN39472448 SRR27593221 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. GCF_006740305.1_ASM674030v1_genomic LeechJ_xxxx__AF29__bin.3 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Lactobacillus Lactobacillus delbrueckii zonkom zonkom Plant Grain millet beverage liquid low mixed mesophilic 1-3 days LeechJ_xxxx__AF29__bin.13 78.18499127 0.785340314 85 1034348 32.14 35785 SAMN39472448 SRR27593221 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. PatroJN_2016__SRS1044731__bin.7 LeechJ_xxxx__AF29__bin.13 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus Ligilactobacillus salivarius zonkom zonkom Plant Grain millet beverage liquid low mixed mesophilic 1-3 days LeechJ_xxxx__AF29__bin.5 68.23427108 1.162835926 330 1301445 42.28 4376 SAMN39472448 SRR27593221 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. YulandiA_2020__SRS6115052__bin.11 LeechJ_xxxx__AF29__bin.5 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Ligilactobacillus Ligilactobacillus agilis zonkom zonkom Plant Grain millet beverage liquid low mixed mesophilic 1-3 days LeechJ_xxxx__AF29__bin.2 81.6576087 0.724637681 61 950685 52.5 18916 SAMN39472448 SRR27593221 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF18__bin.2 LeechJ_xxxx__AF18__bin.2 Bacillota;Bacilli;Lactobacillales;Lactobacillaceae;Limosilactobacillus Limosilactobacillus galli zonkom zonkom Plant Grain millet beverage liquid low mixed mesophilic 1-3 days LeechJ_xxxx__AF29__bin.7 56.8 0.9 2490 7377135 38.24 3167 SAMN39472448 SRR27593221 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44 LeechJ_xxxx__AF29__bin.7 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces Saccharomyces cerevisiae zonkom zonkom Plant Grain millet beverage liquid low mixed mesophilic 1-3 days LeechJ_xxxx__AF29__bin.14 97.3 1.1 882 11930956 38.41 21501 SAMN39472448 SRR27593221 Ghana PRJNA1052643 SRP484221 NCBI Carlino N, Blanco-Míguez A, Punčochář M, Mengoni C, Pinto F, Tatti A, Manghi P, Armanini F, Avagliano M, Barcenilla C, Breselge S, Cabrera-Rubio R, Calvete-Torre I, Coakley M, Cobo-Díaz JF, De Filippis F, Dey H, Leech J, Klaassens ES, Knobloch S, O'Neil D, Quijada NM, Sabater C, Skírnisdóttir S, Valentino V, Walsh L; MASTER EU Consortium; Alvarez-Ordóñez A, Asnicar F, Fackelmann G, Heidrich V, Margolles A, Marteinsson VT, Rota Stabelli O, Wagner M, Ercolini D, Cotter PD, Segata N, Pasolli E. Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. Cell. 2024 Oct 3;187(20):5775-5795.e15. doi: 10.1016/j.cell.2024.07.039. LeechJ_xxxx__AF29__bin.14 LeechJ_xxxx__AF29__bin.14 Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Nakaseomyces Candida glabrata zonkom zonkom Plant Grain millet beverage liquid low mixed mesophilic 1-3 days